Mammalian Genome

Article	Citations
EEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle	54
Genetic and immune landscape of keratoconus: insights from Mendelian randomization analysis	33
Glycosylated protein-related microenvironmental features in breast cancer are associated with patient prognosis	23
Comprehensive analysis reveals the prognostic and immunological role of PSMD13 in hepatocellular carcinoma	21
Genetics of murine type 2 diabetes and comorbidities	21
Climate resilience in goats: a comprehensive review of the genetic basis for adaptation to varied climatic conditions	19
Standardisation and future of preclinical echocardiography	19
Genomic resources for rhesus macaques (Macaca mulatta)	19
Unraveling the maternal heritage: identifying the complex origins of indigenous Indian horse and pony breeds through mitochondrial genome analysis	19
Evaluation of genotype imputation using Glimpse tools on low coverage ancient DNA	18
An interaction of inorganic arsenic exposure with body weight and composition on type 2 diabetes indicators in Diversity Outbred mice	15
Comparative single-cell analysis of the adult heart and coronary vasculature	14
Fine mapping and candidate gene analysis of a dravet syndrome modifier locus on mouse chromosome 11	14
Review on camel genetic diversity: ecological and economic perspectives	13
AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes	12
E2F2 inhibits hippocampal neurogenesis in poststroke depression rats via the miR-1290/CBR1 axis	12
Introduction to Mammalian Genome special issue: cardiovascular disease in the Mammalian Genome.	12
Genomic and functional conservation of lncRNAs: lessons from flies	12
Evaluation of genomic breeding values and accuracy for carcass traits in Korean Hanwoo cows using whole-genome SNP chip panels	12
IMPC impact on preclinical mouse models	11
Of mice and human-specific long noncoding RNAs	11
Generation of a humanized mAce2 and a conditional hACE2 mouse models permissive to SARS-COV-2 infection	11
Alpha-synuclein pathology and Parkinson’s disease-related olfactory dysfunctions: an update on preclinical models and therapeutic approaches	10
EEF1A2 identified as a hub gene associated with the severity of metabolic dysfunction-associated steatotic liver disease	10
Introduction to Mammalian Genome Special Issue: Mammalian Genetic Resources	10

Impaired immune metabolism in COPD driven by dysfunction of CXCL16 + alveolar macrophages: multivariate causal evidence	10
The mouse resource at National Resource Center for Mutant Mice of China	9
Commentary: towards a national research infrastructure strategy for preclinical biological models in Australia	9
Neonatal lethality of mouse A/J-7SM consomic strain is caused by an insertion mutation in the Dchs1 gene	9
TCR CDR3 chemical complementarity to HPV epitopes is associated with a better outcome for cervical cancer	8
Comprehensive overview of disease models for Wolfram syndrome: toward effective treatments	8
Multi-omics dissection of RAD21-PON1 axis reveals metabolic-immune crosstalk and prognostic significance in hepatocellular carcinoma	8
Elucidation of genetic determinants of dyslipidaemia using a global screening array for the early detection of coronary artery disease	7
Exploration of shared diagnostic genes and mechanisms between crohn’s disease and ischemic stroke by integrated comprehensive bioinformatics analysis and machine learning	7
Harmonizing mouse anatomy terminology: a common language?	7
Genome-wide SNP evidence for the genetic uniqueness of indigenous cattle population	7
Maternal genetic diversity and phylogenetic analysis of Indian riverine and swamp buffaloes: insights from complete mitochondrial genomes	7
A consensus score to combine inferences from multiple centres	7
A fascination with tailless mice: a scientific historical review of studies of the T/t complex	7
Transforming beef quality through healthy breeding: a strategy to reduce carcinogenic compounds and enhance human health: a review	7
Predicting the potential deterioration of Barrett’s esophagus based on gut microbiota: a Mendelian randomization analysis	7
Genetic insights into crossbred dairy cattle of Pakistan: exploring allele frequency, linkage disequilibrium, and effective population size at a genome-wide scale	6
Long-read whole-genome sequencing of SHR rat substrains with distinct substance use phenotypes	6
Identification of EXO1 as a potential biomarker associated with prognosis and tumor immune microenvironment for specific human cancers	6
Arginine attenuates chronic mountain sickness in rats via microRNA-144-5p	6
Comprehensive analysis of chromosomal breakpoints and candidate genes associated with male infertility: insights from cytogenetic studies and expression analyses	6
Insights from homozygous signatures of cervus nippon revealed genetic architecture for components of fitness	6
Comparative genomic studies on the TGF-β superfamily in blue whale	6
E3 ubiquitin ligase COP1-mediated CEBPB ubiquitination regulates the inflammatory response of macrophages in sepsis-induced myocardial injury	6
Three-dimensional microCT imaging of mouse heart development from early post-implantation to late fetal stages	6
Purebred dogs show higher levels of genomic damage compared to mixed breed dogs	6
Tachol1 QTL on mouse chromosome 1 is responsible for hypercholesterolemia and diet-induced obesity	6
The mutant mouse resource and research center (MMRRC) consortium: the US-based public mouse repository system	6
AHDSN: an attention-enabled hybrid deep sequential network for cancer survivability prediction from multi-omics data	6
Genome-wide screening for genetic variants in polyadenylation signal (PAS) sites in mouse selection lines for fatness and leanness	5
Alantolactone curbs the malignant progression of bladder cancer partly via the HSP90AB1/LRP5/β-catenin axis	5
Genome engineering with Cas9 and AAV repair templates, successes and pitfalls	5
MicroRNA dysregulation in male infertility: Insights into mechanisms, biomarkers, and therapeutic strategies- review	5
Identification of prostate cancer associated genes for diagnosis and prognosis: a modernized in silico approach	5
Elucidation of population stratifying markers and selective sweeps in crossbred Landlly pig population using genome-wide SNP data	5
Knockdown of lncRNA MIAT attenuated lipopolysaccharide-induced microglial cells injury by sponging miR-613	5
Swine global genomic resources: insights into wild and domesticated populations	5
Enhanced computational strategies for categorizing HER2 kinase domain variants of uncertain significance through structural and functional analysis	5
Challenges of modelling TDP-43 pathology in mice	5
Genome-wide study for signatures of selection identifies genomic regions and candidate genes associated with milk traits in sheep	5
Dynamics and regulatory role of 5-methylcytosine modification in mRNA colocalized with RNA G-quadruplex structure in mouse development	5
Echo2Pheno: a deep-learning application to uncover echocardiographic phenotypes in conscious mice	4
Circular RNA circMTO1 suppressed the progression of renal cell carcinoma progression by sponging miR-211 and miR-204	4
Identification of important gene signatures in schizophrenia through feature fusion and genetic algorithm	4
Genomic advancements in goat breeding: enhancing productivity, disease resistance, and sustainability in India’s rural economy	4
Complementarity and integration of animal and in vitro non-animal pre-clinical model systems– an Australian perspective	4
A comprehensive review of livestock development: insights into domestication, phylogenetics, diversity, and genomic advances	4
Comprehensive analysis of breast cancer oxidative stress related gene signature: a combination of bulk and single-cell RNA sequencing analysis	4
The interplay of hydrogen sulfide and microRNAs in cardiovascular diseases: insights and future perspectives	4
Inflammatory cytokines are associated with stroke and risk factors of cerebrovascular diseases: a Mendelian randomization study	4

Mammalian genome research resources available from the National BioResource Project in Japan	4
Mapping copy number variable regions correlated with reproduction and production traits in Karan Fries cattle mammalian genomics	4
Mechanism of CREB1 in cardiac function of rats with heart failure via regulating the microRNA-376a-3p/TRAF6 axis	3
Canine models of inherited retinal diseases: from neglect to well-recognized translational value	3
A rationale for considering heart/brain axis control in neuropsychiatric disease	3
Retraction Note: MiR-519d-3p enhances the sensitivity of non-small-cell lung cancer to tyrosine kinase inhibitors	3
Online Mendelian Inheritance in Animals (OMIA): a genetic resource for vertebrate animals	3
Genetic variation in the Y chromosome and sex-biased DNA methylation in somatic cells in the mouse	3
Mouse phenome database: curated data repository with interactive multi-population and multi-trait analyses	3
GWAS reveals genomic associations with swine inflammation and necrosis syndrome	3
Intestinal cancer development in response to oral infection with high-fat diet-induced Type 2 diabetes (T2D) in collaborative cross mice under different host genetic background effects	3
Comprehensive ECG reference intervals in C57BL/6N substrains provide a generalizable guide for cardiac electrophysiology studies in mice	3
Fine-scale recombination rates inferred using the canFam4 assembly are strongly correlated with previous maps of dog recombination	3
Retraction Note: CircRNA circ-ATAD1 is downregulated in endometrial cancer and suppresses cell invasion and migration by downregulating miR-10a through methylation	3
Retraction Note: Circ_0069718 promotes the progression of breast cancer by up-regulating NFIB through sequestering miR-590-5p	3
Genome-wide detection of copy number variations in indigenous Red Sindhi cattle using ddRAD sequencing	3
Recent advances in the genomic resources for sheep	3
CDC167 exhibits potential as a biomarker for airway inflammation in asthma	3
The COL6A5-p.Glu2272* mutation induces chronic itch in mice	3
The alliance of genome resources: transforming comparative genomics	3
Preclinical research (on rare diseases): we need to talk about health equity	3
Genome-wide insights into selection signatures for transcription factor binding sites in cattle ROH regions	3
Genetic factors underlying host resistance to Rhipicephalus microplus tick infestation in Braford cattle: a systems biology perspective	3
Impact of IL-6 rs1800795 and rs1800796 polymorphisms on clinical outcomes of COVID-19: a study on severity of disease in Turkish population	3
Genetic factors underlying Mandibular prognathism: insights from recent human and animal studies	3
Telemedical monitoring in patients with inborn cardiac disease – experience of a tertiary care centre	3
Assessing the causal relationship between immune cells and prostatitis: evidence from bidirectional mendelian randomization analysis	2
Mutation of the Thap4 gene causes dwarfism and testicular anomalies in rats and mice	2
The spontaneous mouse mutant low set ears (Lse) is caused by tandem duplication of Fgf3 and Fgf4	2
A quality framework for cryopreserved rodent disease models: INFRAFRONTIER quality principles in EMMA archiving and distribution	2
The effect of different approaches to determining the regularization parameter of bayesian LASSO on the accuracy of genomic prediction	2
In search of epigenetic hallmarks of different tissues: an integrative omics study of horse liver, lung, and heart	2
Genome-wide selective sweep analysis in high-altitude Changthangi goats reveals candidate genes for pashmina fiber production	2
Prune homolog 2 with BCH domain (PRUNE2) gene expression is associated with feed efficiency-related traits in Nelore steers	2
Whole-genome sequencing and genomic analysis of Norduz goat (Capra hircus)	2
Unraveling the genetic and physiological potential of donkeys: insights from genomics, proteomics, and metabolomics approaches	2
Genomic insights into the recent evolution and biodiversity of Italian sheep breeds	2
What to consider for ECG in mice—with special emphasis on telemetry	2
Pyroptosis is involved in the immune microenvironment regulation of unexplained recurrent miscarriage	2
Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data	2
Retraction Note: Overexpression of ROCK1 promotes cancer cell proliferation and is associated with poor prognosis in human urothelial bladder cancer	2
The RSPO2 gene is associated with bilateral anterior amelia in Chihuahuas	2
Mapping novel QTL and fine mapping of previously identified QTL associated with glucose tolerance using the collaborative cross mice	1
Rare and common variants in ERAP1 and ERAP2 selected for in response to Yersinia pestis infection contribute to autoimmune disease including inflammatory bowel disease	1
Polygenic control of the wavy coat of the NCT mouse: involvement of an intracisternal A particle insertional mutation of the protease, serine 53 (Prss53) gene, and a modifier gene	1
Revealing the key role of cuproptosis in osteoporosis via the bioinformatic analysis and experimental validation of cuproptosis-related genes	1
Diverse wild-derived inbred strains provide a new community resource	1
Exploring the mediating role of potential therapeutic genes in the pathogenesis of hypopituitarism through the metabolites from a genomic perspective	1
LncRNA NEAT1 sponges miR-214 to promoted tumor growth in hepatocellular carcinoma	1
A graph theoretical approach to experimental prioritization in genome-scale investigations	1
Identification of genetic biomarkers of blood cholesterol levels using whole gene pathogenicity modelling	1
Retraction Note: LncRNA TLR8-AS1 suppresses miR-34a maturation in hepatocellular carcinoma to suppress cell proliferation and migration	1
The use of genistein and ambroxol may be an effective approach in correcting cellular dysfunctions of mucopolysaccharidosis-plus syndrome	1
Age-associated changes in gene expression in the anterior pituitary glands of female Japanese black cattle	1
Identification of biomarkers associated with phagocytosis regulatory factors in coronary artery disease using machine learning and network analysis	1
Promises and challenges of cardiac organoids	1
Generation and characterization of a knock-in mouse model for spastic tetraplegia, thin corpus callosum, and progressive microcephaly (SPATCCM)	1
Mouse genomic and cellular annotations	1
The mouse metabolic phenotyping center (MMPC) live consortium: an NIH resource for in vivo characterization of mouse models of diabetes and obesity	1
Comprehensive identification of crucial biomarkers and therapeutic targets in cholestasis via integrated single-cell RNA and transcriptome sequencing analysis	1
Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue	1
RMRP inhibition prevents NAFLD progression in rats via regulating miR-206/PTPN1 axis	1
MicroRNA expression profiling of ovine epithelial cells stimulated with the Staphylococcus aureus in vitro	1
Low-coverage whole-genome sequencing facilitates accurate and cost-effective haplotype reconstruction in complex mouse crosses	1
Beyond black and white: dissecting the genetic basis of skin depigmentation in Nellore cattle	1
The mouse resource at National Resource Center for Mutant Mice	1
Cataloging copy number variation regions and allied diversity in goat breeds spanning pan India	1
Gut metabolites and functional recovery after ischemic stroke: a genetic perspective	1
Identification of novel biomarkers for atherosclerosis using single-cell RNA sequencing and machine learning	1
Transcriptome studies of inherited dilated cardiomyopathies	1
Causal relationship between imaging-derived phenotypes and neurodegenerative diseases: a Mendelian randomization study	1
Identification of cis-sQTL demonstrates genetic associations and functional implications of inflammatory processes in Nelore cattle muscle tissue	1
ZDHHC5 and ZDHHC14 promote depression via the mediation of double-negative T cells	1
Retraction Note to: miR-217-5p inhibits invasion and metastasis of prostate cancer by targeting clusterin	1
Commentary: The International Mouse Phenotyping Consortium: high-throughput in vivo functional annotation of the mammalian genome	1
Exploring the mediating role of immune cells in the pathogenesis of IgA nephropathy through the inflammatory axis of gut microbiota from a genomic perspective	1
Cross-tissue enrichment patterns reveal functional clustering in normal human tissues from GTEx	1
Genetic diversity of North African populations in the 17q21 genomic region	1
Understanding PACS2 syndrome’s pathomechanism by studying E209K and E211K mutations	1
Exploring the therapeutic effect of melatonin targeting common biomarkers in testicular germ cell tumor, prostate adenocarcinoma, and male infertility: an integrated biology approach	1

Prdm9 deficiency of rat oocytes causes synapsis among non-homologous chromosomes and aneuploidy	1
Correction: Canine models of inherited retinal diseases: from neglect to well-recognized translational value	1
LncRNAs at the heart of development and disease	1