OOIR: Observatory of International Research

Papers

(The median citation count of Mammalian Genome is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
Evaluation of genotype imputation using Glimpse tools on low coverage ancient DNA	65
Climate resilience in goats: a comprehensive review of the genetic basis for adaptation to varied climatic conditions	53
Designing libraries for pooled CRISPR functional screens of long noncoding RNAs	44
EEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle	43
Unraveling the maternal heritage: identifying the complex origins of indigenous Indian horse and pony breeds through mitochondrial genome analysis	42
Genomic resources for rhesus macaques (Macaca mulatta)	35
Comprehensive analysis reveals the prognostic and immunological role of PSMD13 in hepatocellular carcinoma	30
An interaction of inorganic arsenic exposure with body weight and composition on type 2 diabetes indicators in Diversity Outbred mice	25
Fine mapping and candidate gene analysis of a dravet syndrome modifier locus on mouse chromosome 11	22
Standardisation and future of preclinical echocardiography	22
Genetics of murine type 2 diabetes and comorbidities	22
Comparative single-cell analysis of the adult heart and coronary vasculature	21
RETRACTED ARTICLE: CircRNA_0043691 sponges miR-873-3p to promote metastasis of gastric cancer	21
Review on camel genetic diversity: ecological and economic perspectives	20
A deletion containing a CTCF-element in intron 8 of the Bbs7 gene is partially responsible for juvenile obesity in the Berlin Fat Mouse	19
Introduction to Mammalian Genome special issue: cardiovascular disease in the Mammalian Genome.	18
Genomic and functional conservation of lncRNAs: lessons from flies	17
AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes	17
IMPC impact on preclinical mouse models	16
RETRACTED ARTICLE: LncRNA TLR8-AS1 suppresses miR-34a maturation in hepatocellular carcinoma to suppress cell proliferation and migration	15
Generation of a humanized mAce2 and a conditional hACE2 mouse models permissive to SARS-COV-2 infection	15
EEF1A2 identified as a hub gene associated with the severity of metabolic dysfunction-associated steatotic liver disease	14
Of mice and human-specific long noncoding RNAs	14
New insights into the microbiota of wild mice	13
Introduction to Mammalian Genome Special Issue: Mammalian Genetic Resources	13

Annotated expression and activity data for murine recombinase alleles and transgenes: the CrePortal resource	13
Alpha-synuclein pathology and Parkinson’s disease-related olfactory dysfunctions: an update on preclinical models and therapeutic approaches	13
Circular RNA circNRIP1 plays oncogenic roles in the progression of osteosarcoma	13
Commentary: towards a national research infrastructure strategy for preclinical biological models in Australia	12
Neonatal lethality of mouse A/J-7SM consomic strain is caused by an insertion mutation in the Dchs1 gene	12
The mouse resource at National Resource Center for Mutant Mice of China	11
Comprehensive overview of disease models for Wolfram syndrome: toward effective treatments	11
TCR CDR3 chemical complementarity to HPV epitopes is associated with a better outcome for cervical cancer	11
A fascination with tailless mice: a scientific historical review of studies of the T/t complex	11
Elucidation of genetic determinants of dyslipidaemia using a global screening array for the early detection of coronary artery disease	10
The circular RNA circCRIM1 inhibits osteosarcoma progression through sponging miR-513	10
A consensus score to combine inferences from multiple centres	10
Comparative genomic studies on the TGF-β superfamily in blue whale	9
Genetic insights into crossbred dairy cattle of Pakistan: exploring allele frequency, linkage disequilibrium, and effective population size at a genome-wide scale	9
Maternal genetic diversity and phylogenetic analysis of Indian riverine and swamp buffaloes: insights from complete mitochondrial genomes	9
Predicting the potential deterioration of Barrett’s esophagus based on gut microbiota: a Mendelian randomization analysis	9
Purebred dogs show higher levels of genomic damage compared to mixed breed dogs	8
Insights from homozygous signatures of cervus nippon revealed genetic architecture for components of fitness	8
Genome-wide study for signatures of selection identifies genomic regions and candidate genes associated with milk traits in sheep	7
Three-dimensional microCT imaging of mouse heart development from early post-implantation to late fetal stages	7
The mutant mouse resource and research center (MMRRC) consortium: the US-based public mouse repository system	7
Elucidation of population stratifying markers and selective sweeps in crossbred Landlly pig population using genome-wide SNP data	7
Tachol1 QTL on mouse chromosome 1 is responsible for hypercholesterolemia and diet-induced obesity	7
Systems genetics analysis of oral squamous cell carcinoma susceptibility using the mouse model: current position and new perspective	7
Identification of EXO1 as a potential biomarker associated with prognosis and tumor immune microenvironment for specific human cancers	7
Comprehensive analysis of chromosomal breakpoints and candidate genes associated with male infertility: insights from cytogenetic studies and expression analyses	7
Arginine attenuates chronic mountain sickness in rats via microRNA-144-5p	6
Mouse Genome Informatics (MGI): latest news from MGD and GXD	6
Swine global genomic resources: insights into wild and domesticated populations	6
E3 ubiquitin ligase COP1-mediated CEBPB ubiquitination regulates the inflammatory response of macrophages in sepsis-induced myocardial injury	6
Genome engineering with Cas9 and AAV repair templates, successes and pitfalls	6
Asian Mouse Mutagenesis Resource Association (AMMRA): mouse genetics and laboratory animal resources in the Asia Pacific	6
Challenges of modelling TDP-43 pathology in mice	6
Association of gene polymorphisms in MYH11 and TGF-β signaling with the susceptibility and clinical outcomes of DeBakey type III aortic dissection	6
Knockdown of lncRNA MIAT attenuated lipopolysaccharide-induced microglial cells injury by sponging miR-613	6
Genome-wide screening for genetic variants in polyadenylation signal (PAS) sites in mouse selection lines for fatness and leanness	5
Identification of prostate cancer associated genes for diagnosis and prognosis: a modernized in silico approach	5
Circular RNA circMTO1 suppressed the progression of renal cell carcinoma progression by sponging miR-211 and miR-204	5
Mouse resources at the RIKEN BioResource Research Center and the National BioResource Project core facility in Japan	5
Mammalian genome research resources available from the National BioResource Project in Japan	5
The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research	5
Sequencing and comparative genome analysis of three Indians	5
Genetic factors underlying Mandibular prognathism: insights from recent human and animal studies	5
Mouse phenome database: curated data repository with interactive multi-population and multi-trait analyses	5
Importing genetically altered animals: ensuring quality	5
Echo2Pheno: a deep-learning application to uncover echocardiographic phenotypes in conscious mice	5
The interplay of hydrogen sulfide and microRNAs in cardiovascular diseases: insights and future perspectives	5
Identification of important gene signatures in schizophrenia through feature fusion and genetic algorithm	5
A comprehensive review of livestock development: insights into domestication, phylogenetics, diversity, and genomic advances	5
The miR-302s/367 Cluster Inhibits the Proliferation and Apoptosis in Sheep Fetal Fibroblasts via the Cell Cycle and PI3K-Akt Pathways	4

Comprehensive analysis of breast cancer oxidative stress related gene signature: a combination of bulk and single-cell RNA sequencing analysis	4
Inactivation of testis-specific gene C4orf46 is dispensable for spermatogenesis and fertility in mouse	4
Genetic factors underlying host resistance to Rhipicephalus microplus tick infestation in Braford cattle: a systems biology perspective	4
Intestinal cancer development in response to oral infection with high-fat diet-induced Type 2 diabetes (T2D) in collaborative cross mice under different host genetic background effects	4
Recent advances in the genomic resources for sheep	4
Impact of IL-6 rs1800795 and rs1800796 polymorphisms on clinical outcomes of COVID-19: a study on severity of disease in Turkish population	4
CDC167 exhibits potential as a biomarker for airway inflammation in asthma	4
LncRNAs PSMG3-AS1 and MEG3 negatively regulate each other to participate in endometrial carcinoma cell proliferation	4
Mechanism of CREB1 in cardiac function of rats with heart failure via regulating the microRNA-376a-3p/TRAF6 axis	4
INFRAFRONTIER quality principles in systemic phenotyping	4
Online Mendelian Inheritance in Animals (OMIA): a genetic resource for vertebrate animals	4
Genetic variation in the Y chromosome and sex-biased DNA methylation in somatic cells in the mouse	4
The COL6A5-p.Glu2272* mutation induces chronic itch in mice	4
Comprehensive ECG reference intervals in C57BL/6N substrains provide a generalizable guide for cardiac electrophysiology studies in mice	3
Retraction Note: MiR-519d-3p enhances the sensitivity of non-small-cell lung cancer to tyrosine kinase inhibitors	3
RETRACTED ARTICLE: miR-217-5p Inhibits Invasion and Metastasis of Prostate Cancer by Targeting Clusterin	3
The RSPO2 gene is associated with bilateral anterior amelia in Chihuahuas	3
Retraction Note: CircRNA circ-ATAD1 is downregulated in endometrial cancer and suppresses cell invasion and migration by downregulating miR-10a through methylation	3
Assessing the causal relationship between immune cells and prostatitis: evidence from bidirectional mendelian randomization analysis	3
The alliance of genome resources: transforming comparative genomics	3
GWAS reveals genomic associations with swine inflammation and necrosis syndrome	3
Retraction Note: Circ_0069718 promotes the progression of breast cancer by up-regulating NFIB through sequestering miR-590-5p	3
A rationale for considering heart/brain axis control in neuropsychiatric disease	3
Unraveling the genetic and physiological potential of donkeys: insights from genomics, proteomics, and metabolomics approaches	3
What to consider for ECG in mice—with special emphasis on telemetry	3
Telemedical monitoring in patients with inborn cardiac disease – experience of a tertiary care centre	3
Genome-wide insights into selection signatures for transcription factor binding sites in cattle ROH regions	3
Preclinical research (on rare diseases): we need to talk about health equity	3
In search of epigenetic hallmarks of different tissues: an integrative omics study of horse liver, lung, and heart	3
The effect of different approaches to determining the regularization parameter of bayesian LASSO on the accuracy of genomic prediction	3
Canine models of inherited retinal diseases: from neglect to well-recognized translational value	3
The spontaneous mouse mutant low set ears (Lse) is caused by tandem duplication of Fgf3 and Fgf4	2
Prune homolog 2 with BCH domain (PRUNE2) gene expression is associated with feed efficiency-related traits in Nelore steers	2
The mouse metabolic phenotyping center (MMPC) live consortium: an NIH resource for in vivo characterization of mouse models of diabetes and obesity	2
The birth of piRNAs: how mammalian piRNAs are produced, originated, and evolved	2
LncRNAs at the heart of development and disease	2
Mutation of the Thap4 gene causes dwarfism and testicular anomalies in rats and mice	2
Identification of novel biomarkers for atherosclerosis using single-cell RNA sequencing and machine learning	2
Transcriptome studies of inherited dilated cardiomyopathies	2
Identification of cis-sQTL demonstrates genetic associations and functional implications of inflammatory processes in Nelore cattle muscle tissue	2
Pyroptosis is involved in the immune microenvironment regulation of unexplained recurrent miscarriage	2
Retraction Note: Overexpression of ROCK1 promotes cancer cell proliferation and is associated with poor prognosis in human urothelial bladder cancer	2
Mapping novel QTL and fine mapping of previously identified QTL associated with glucose tolerance using the collaborative cross mice	2
Promises and challenges of cardiac organoids	2
Generation and characterization of a knock-in mouse model for spastic tetraplegia, thin corpus callosum, and progressive microcephaly (SPATCCM)	2
Causal relationship between imaging-derived phenotypes and neurodegenerative diseases: a Mendelian randomization study	2
Whole-genome sequencing and genomic analysis of Norduz goat (Capra hircus)	2
Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data	2
Swine models for translational oncological research: an evolving landscape and regulatory considerations	2
Prdm9 deficiency of rat oocytes causes synapsis among non-homologous chromosomes and aneuploidy	1
Age-associated changes in gene expression in the anterior pituitary glands of female Japanese black cattle	1
Gut metabolites and functional recovery after ischemic stroke: a genetic perspective	1
Integrative approaches to m6A and m5C RNA modifications in autism spectrum disorder revealing potential causal variants	1
Diverse wild-derived inbred strains provide a new community resource	1
Mitral valve transcriptome analysis in thirty-four age-matched Cavalier King Charles Spaniels with or without congestive heart failure caused by myxomatous mitral valve disease	1
Commentary: The International Mouse Phenotyping Consortium: high-throughput in vivo functional annotation of the mammalian genome	1
Genetic diversity of North African populations in the 17q21 genomic region	1
Mouse genomic and cellular annotations	1
Polygenic control of the wavy coat of the NCT mouse: involvement of an intracisternal A particle insertional mutation of the protease, serine 53 (Prss53) gene, and a modifier gene	1
RMRP inhibition prevents NAFLD progression in rats via regulating miR-206/PTPN1 axis	1
Retraction Note: LncRNA TLR8-AS1 suppresses miR-34a maturation in hepatocellular carcinoma to suppress cell proliferation and migration	1
Exploring the therapeutic effect of melatonin targeting common biomarkers in testicular germ cell tumor, prostate adenocarcinoma, and male infertility: an integrated biology approach	1
Understanding PACS2 syndrome’s pathomechanism by studying E209K and E211K mutations	1
Genomic patterns of selection in morphometric traits across diverse Indian cattle breeds	1
Runs of homozygosity and signatures of selection for number of oocytes and embryos in the Gir Indicine cattle	1
Correction: Canine models of inherited retinal diseases: from neglect to well-recognized translational value	1
LncRNA NEAT1 sponges miR-214 to promoted tumor growth in hepatocellular carcinoma	1
Retraction Note to: miR-217-5p inhibits invasion and metastasis of prostate cancer by targeting clusterin	1
Exploring the mediating role of immune cells in the pathogenesis of IgA nephropathy through the inflammatory axis of gut microbiota from a genomic perspective	1
Murine allele and transgene symbols: ensuring unique, concise, and informative nomenclature	1
RETRACTED ARTICLE: Overexpression of ROCK1 promotes cancer cell proliferation and is associated with poor prognosis in human urothelial bladder cancer	1
A graph theoretical approach to experimental prioritization in genome-scale investigations	1
Cataloging copy number variation regions and allied diversity in goat breeds spanning pan India	1
The mouse resource at National Resource Center for Mutant Mice	1
Significance of lncRNA abundance to function	1
Revealing the key role of cuproptosis in osteoporosis via the bioinformatic analysis and experimental validation of cuproptosis-related genes	1
Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue	1
MicroRNA expression profiling of ovine epithelial cells stimulated with the Staphylococcus aureus in vitro	1
LncRNAs in domesticated animals: from dog to livestock species	1
Identification of biomarkers associated with phagocytosis regulatory factors in coronary artery disease using machine learning and network analysis	1