Mammalian Genome

Article	Citations
EEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle	61
Primary biliary cirrhosis and rheumatoid arthritis: a comprehensive study combining genetics and transcriptomics	24
Comprehensive analysis reveals the prognostic and immunological role of PSMD13 in hepatocellular carcinoma	23
An interaction of inorganic arsenic exposure with body weight and composition on type 2 diabetes indicators in Diversity Outbred mice	20
Evaluation of genotype imputation using Glimpse tools on low coverage ancient DNA	20
Climate resilience in goats: a comprehensive review of the genetic basis for adaptation to varied climatic conditions	17
Standardisation and future of preclinical echocardiography	16
Unraveling the maternal heritage: identifying the complex origins of indigenous Indian horse and pony breeds through mitochondrial genome analysis	16
Glycosylated protein-related microenvironmental features in breast cancer are associated with patient prognosis	15
Cancer-associated TRF1 mutations alter PARP1 interaction dynamics: an in silico study	15
Comparative single-cell analysis of the adult heart and coronary vasculature	14
Genetic and immune landscape of keratoconus: insights from Mendelian randomization analysis	14
Polymorphisms in IRF3 exon 1 influence the immune response to Brucella infection in small ruminants	14
Genome-wide in-silico identification and characterization of LTR retrotransposons in domestic goat (Capra hircus)	13
Introduction to Mammalian Genome special issue: cardiovascular disease in the Mammalian Genome.	12
Fine mapping and candidate gene analysis of a dravet syndrome modifier locus on mouse chromosome 11	12
Evaluation of genomic breeding values and accuracy for carcass traits in Korean Hanwoo cows using whole-genome SNP chip panels	12
AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes	11
Integrative immunogenomic and experimental characterization reveals CXCL9, CXCL13, CCL5 and CD74 as key oncogenic drivers in breast cancer	11
IMPC impact on preclinical mouse models	10
Review on camel genetic diversity: ecological and economic perspectives	10
Alpha-synuclein pathology and Parkinson’s disease-related olfactory dysfunctions: an update on preclinical models and therapeutic approaches	9
Impaired immune metabolism in COPD driven by dysfunction of CXCL16 + alveolar macrophages: multivariate causal evidence	9
EEF1A2 identified as a hub gene associated with the severity of metabolic dysfunction-associated steatotic liver disease	9
E2F2 inhibits hippocampal neurogenesis in poststroke depression rats via the miR-1290/CBR1 axis	9

Generation of a humanized mAce2 and a conditional hACE2 mouse models permissive to SARS-COV-2 infection	8
Commentary: towards a national research infrastructure strategy for preclinical biological models in Australia	8
TCR CDR3 chemical complementarity to HPV epitopes is associated with a better outcome for cervical cancer	8
Are we fully exploiting genetic discoveries to understand and treat Alzheimer’s disease?	8
Exploring the molecular function of LYPD3 from pan-cancer to lung cancer: based on bioinformatics and cellular experiments	8
Multi-omics dissection of RAD21-PON1 axis reveals metabolic-immune crosstalk and prognostic significance in hepatocellular carcinoma	8
Neonatal lethality of mouse A/J-7SM consomic strain is caused by an insertion mutation in the Dchs1 gene	8
The mouse resource at National Resource Center for Mutant Mice of China	8
Genome-wide SNP evidence for the genetic uniqueness of indigenous cattle population	8
A consensus score to combine inferences from multiple centres	7
Cell-type-specific causal effects of CEBPD in CD8 + S100B + Tcells and ZFP36 in monocytes modulate the protective and risk phenotypes in psoriasis	7
Knockdown of SOX4 attenuates sepsis myocardial injury by inhibiting the EZH2/H3K27me3/SOCS3 axis	7
Long-read whole-genome sequencing of SHR rat substrains with distinct substance use phenotypes	7
Transforming beef quality through healthy breeding: a strategy to reduce carcinogenic compounds and enhance human health: a review	7
Elucidation of genetic determinants of dyslipidaemia using a global screening array for the early detection of coronary artery disease	7
Exploration of shared diagnostic genes and mechanisms between crohn’s disease and ischemic stroke by integrated comprehensive bioinformatics analysis and machine learning	7
Predicting the potential deterioration of Barrett’s esophagus based on gut microbiota: a Mendelian randomization analysis	7
Comprehensive overview of disease models for Wolfram syndrome: toward effective treatments	7
Harmonizing mouse anatomy terminology: a common language?	7
Insights from homozygous signatures of cervus nippon revealed genetic architecture for components of fitness	6
Maternal genetic diversity and phylogenetic analysis of Indian riverine and swamp buffaloes: insights from complete mitochondrial genomes	6
Tachol1 QTL on mouse chromosome 1 is responsible for hypercholesterolemia and diet-induced obesity	6
A fascination with tailless mice: a scientific historical review of studies of the T/t complex	6
Genetic insights into crossbred dairy cattle of Pakistan: exploring allele frequency, linkage disequilibrium, and effective population size at a genome-wide scale	6
The mutant mouse resource and research center (MMRRC) consortium: the US-based public mouse repository system	6
Purebred dogs show higher levels of genomic damage compared to mixed breed dogs	6
Comparative genomic studies on the TGF-β superfamily in blue whale	6
Comprehensive analysis of chromosomal breakpoints and candidate genes associated with male infertility: insights from cytogenetic studies and expression analyses	6
Alantolactone curbs the malignant progression of bladder cancer partly via the HSP90AB1/LRP5/β-catenin axis	5
Three-dimensional microCT imaging of mouse heart development from early post-implantation to late fetal stages	5
Challenges of modelling TDP-43 pathology in mice	5
Enhanced computational strategies for categorizing HER2 kinase domain variants of uncertain significance through structural and functional analysis	5
Identification of EXO1 as a potential biomarker associated with prognosis and tumor immune microenvironment for specific human cancers	5
Dynamics and regulatory role of 5-methylcytosine modification in mRNA colocalized with RNA G-quadruplex structure in mouse development	5
Elucidation of population stratifying markers and selective sweeps in crossbred Landlly pig population using genome-wide SNP data	5
Genome-wide study for signatures of selection identifies genomic regions and candidate genes associated with milk traits in sheep	5
MicroRNA dysregulation in male infertility: Insights into mechanisms, biomarkers, and therapeutic strategies- review	5
AHDSN: an attention-enabled hybrid deep sequential network for cancer survivability prediction from multi-omics data	5
E3 ubiquitin ligase COP1-mediated CEBPB ubiquitination regulates the inflammatory response of macrophages in sepsis-induced myocardial injury	5
Arginine attenuates chronic mountain sickness in rats via microRNA-144-5p	5
Swine global genomic resources: insights into wild and domesticated populations	5
Genome engineering with Cas9 and AAV repair templates, successes and pitfalls	5
Genetic factors underlying Mandibular prognathism: insights from recent human and animal studies	4
Identification of prostate cancer associated genes for diagnosis and prognosis: a modernized in silico approach	4
Complementarity and integration of animal and in vitro non-animal pre-clinical model systems– an Australian perspective	4
Genome assembly of the Neotropical marsh rat Holochilus nanus (Cricetidae: Sigmodontinae) brings insights on B and sex chromosome evolution	4
Mapping copy number variable regions correlated with reproduction and production traits in Karan Fries cattle mammalian genomics	4
Echo2Pheno: a deep-learning application to uncover echocardiographic phenotypes in conscious mice	4
Identification and validation of PANX1 as an inflammasome-related biomarker in gestational diabetes mellitus: insights from machine learning and experimental approaches	4
The interplay of hydrogen sulfide and microRNAs in cardiovascular diseases: insights and future perspectives	4

Mammalian genome research resources available from the National BioResource Project in Japan	4
Comprehensive analysis of breast cancer oxidative stress related gene signature: a combination of bulk and single-cell RNA sequencing analysis	4
A comprehensive review of livestock development: insights into domestication, phylogenetics, diversity, and genomic advances	4
Inflammatory cytokines are associated with stroke and risk factors of cerebrovascular diseases: a Mendelian randomization study	4
Genome-wide screening for genetic variants in polyadenylation signal (PAS) sites in mouse selection lines for fatness and leanness	4
Identification of important gene signatures in schizophrenia through feature fusion and genetic algorithm	4
Oncogenic role of LncRNA DLEU2 in thyroid cancer through a NAT10/USP39 regulatory axis	3
Online Mendelian Inheritance in Animals (OMIA): a genetic resource for vertebrate animals	3
Genetic variation in the Y chromosome and sex-biased DNA methylation in somatic cells in the mouse	3
Intestinal cancer development in response to oral infection with high-fat diet-induced Type 2 diabetes (T2D) in collaborative cross mice under different host genetic background effects	3
Recent advances in the genomic resources for sheep	3
Retraction Note: Circ_0069718 promotes the progression of breast cancer by up-regulating NFIB through sequestering miR-590-5p	3
Genome-wide insights into selection signatures for transcription factor binding sites in cattle ROH regions	3
Preclinical research (on rare diseases): we need to talk about health equity	3
Fine-scale recombination rates inferred using the canFam4 assembly are strongly correlated with previous maps of dog recombination	3
A rationale for considering heart/brain axis control in neuropsychiatric disease	3
Telemedical monitoring in patients with inborn cardiac disease – experience of a tertiary care centre	3
AFAP1-AS1 regulates oral squamous cell carcinoma development through the miR-93-3p/CCND1 signaling pathway	3
Integrated multi-omics and machine learning prioritize key immune genes for multiple sclerosis risk prediction	3
Impact of IL-6 rs1800795 and rs1800796 polymorphisms on clinical outcomes of COVID-19: a study on severity of disease in Turkish population	3
Large-scale mouse mutagenesis identifies novel genes affecting vertebral anatomy	3
Mouse phenome database: curated data repository with interactive multi-population and multi-trait analyses	3
Genetic factors underlying host resistance to Rhipicephalus microplus tick infestation in Braford cattle: a systems biology perspective	3
CDC167 exhibits potential as a biomarker for airway inflammation in asthma	3
The COL6A5-p.Glu2272* mutation induces chronic itch in mice	3
Comprehensive ECG reference intervals in C57BL/6N substrains provide a generalizable guide for cardiac electrophysiology studies in mice	3
The alliance of genome resources: transforming comparative genomics	3
GWAS reveals genomic associations with swine inflammation and necrosis syndrome	3
Vascular contribution to cognitive impairment and dementia (VCID): proceedings of 2025 workshop of the Jackson Laboratory	3
Genome-wide detection of copy number variations in indigenous Red Sindhi cattle using ddRAD sequencing	3
Retraction Note: MiR-519d-3p enhances the sensitivity of non-small-cell lung cancer to tyrosine kinase inhibitors	3
Genomic advancements in goat breeding: enhancing productivity, disease resistance, and sustainability in India’s rural economy	3
Assessment of genome-wide genetic variability and population divergence of four native Turkish sheep breeds	3
Assessing the causal relationship between immune cells and prostatitis: evidence from bidirectional mendelian randomization analysis	3
Canine models of inherited retinal diseases: from neglect to well-recognized translational value	3
Transcriptome studies of inherited dilated cardiomyopathies	2
Causal relationship between imaging-derived phenotypes and neurodegenerative diseases: a Mendelian randomization study	2
Promises and challenges of cardiac organoids	2
Detection of selection signatures in indigenous African cattle reveals genomic footprints of adaptation, production and temperament traits	2
Retraction Note: CircRNA circ-ATAD1 is downregulated in endometrial cancer and suppresses cell invasion and migration by downregulating miR-10a through methylation	2
Mutation of the Thap4 gene causes dwarfism and testicular anomalies in rats and mice	2
Genomic insights into the recent evolution and biodiversity of Italian sheep breeds	2
Whole-genome sequencing and genomic analysis of Norduz goat (Capra hircus)	2
Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data	2
Identification of novel biomarkers for atherosclerosis using single-cell RNA sequencing and machine learning	2
The RSPO2 gene is associated with bilateral anterior amelia in Chihuahuas	2
In search of epigenetic hallmarks of different tissues: an integrative omics study of horse liver, lung, and heart	2
What to consider for ECG in mice—with special emphasis on telemetry	2
A quality framework for cryopreserved rodent disease models: INFRAFRONTIER quality principles in EMMA archiving and distribution	2
Rare and common variants in ERAP1 and ERAP2 selected for in response to Yersinia pestis infection contribute to autoimmune disease including inflammatory bowel disease	2
Pyroptosis is involved in the immune microenvironment regulation of unexplained recurrent miscarriage	2
Prune homolog 2 with BCH domain (PRUNE2) gene expression is associated with feed efficiency-related traits in Nelore steers	2
The effect of different approaches to determining the regularization parameter of bayesian LASSO on the accuracy of genomic prediction	2
Unraveling the genetic and physiological potential of donkeys: insights from genomics, proteomics, and metabolomics approaches	2
Genome-wide selective sweep analysis in high-altitude Changthangi goats reveals candidate genes for pashmina fiber production	2
The spontaneous mouse mutant low set ears (Lse) is caused by tandem duplication of Fgf3 and Fgf4	2
The use of genistein and ambroxol may be an effective approach in correcting cellular dysfunctions of mucopolysaccharidosis-plus syndrome	1
Retraction Note to: miR-217-5p inhibits invasion and metastasis of prostate cancer by targeting clusterin	1
Runs of homozygosity and signatures of selection for number of oocytes and embryos in the Gir Indicine cattle	1
Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue	1
Commentary: The International Mouse Phenotyping Consortium: high-throughput in vivo functional annotation of the mammalian genome	1
Exploring the mediating role of potential therapeutic genes in the pathogenesis of hypopituitarism through the metabolites from a genomic perspective	1
Prdm9 deficiency of rat oocytes causes synapsis among non-homologous chromosomes and aneuploidy	1
Gut metabolites and functional recovery after ischemic stroke: a genetic perspective	1
Cataloging copy number variation regions and allied diversity in goat breeds spanning pan India	1
Understanding PACS2 syndrome’s pathomechanism by studying E209K and E211K mutations	1
Low-coverage whole-genome sequencing facilitates accurate and cost-effective haplotype reconstruction in complex mouse crosses	1
Generation and characterization of a knock-in mouse model for spastic tetraplegia, thin corpus callosum, and progressive microcephaly (SPATCCM)	1
ZDHHC5 and ZDHHC14 promote depression via the mediation of double-negative T cells	1
Identification of cis-sQTL demonstrates genetic associations and functional implications of inflammatory processes in Nelore cattle muscle tissue	1
Revealing the key role of cuproptosis in osteoporosis via the bioinformatic analysis and experimental validation of cuproptosis-related genes	1
Comprehensive identification of crucial biomarkers and therapeutic targets in cholestasis via integrated single-cell RNA and transcriptome sequencing analysis	1
MicroRNA expression profiling of ovine epithelial cells stimulated with the Staphylococcus aureus in vitro	1
Genetic diversity of North African populations in the 17q21 genomic region	1
m5c-modified LINC01094 participates in epithelial-mesenchymal transition and metastasis of cervical cancer cells via the ZNF582-SIRT1/p53 axis	1
Genomic architecture of insertion-deletion (indel) variants in beetal goats of India	1
Identification of biomarkers associated with phagocytosis regulatory factors in coronary artery disease using machine learning and network analysis	1
Retraction Note: LncRNA TLR8-AS1 suppresses miR-34a maturation in hepatocellular carcinoma to suppress cell proliferation and migration	1
Beyond black and white: dissecting the genetic basis of skin depigmentation in Nellore cattle	1
Age-associated changes in gene expression in the anterior pituitary glands of female Japanese black cattle	1

Retraction Note: Overexpression of ROCK1 promotes cancer cell proliferation and is associated with poor prognosis in human urothelial bladder cancer	1
A graph theoretical approach to experimental prioritization in genome-scale investigations	1
Exploring the therapeutic effect of melatonin targeting common biomarkers in testicular germ cell tumor, prostate adenocarcinoma, and male infertility: an integrated biology approach	1
MiR-324-5p mitigates experimental acute pancreatitis by suppressing Rock2 expression	1
Diverse wild-derived inbred strains provide a new community resource	1
Regulation of humeral fracture healing by miR-21 through SMAD7-mediated activation of Wnt/β-catenin signaling	1
Exploring the mediating role of immune cells in the pathogenesis of IgA nephropathy through the inflammatory axis of gut microbiota from a genomic perspective	1
Genomic-microbial coevolution in human development: chromosome 2 fusion, and human accelerated regions	1
Correction: Canine models of inherited retinal diseases: from neglect to well-recognized translational value	1
Identification of genetic biomarkers of blood cholesterol levels using whole gene pathogenicity modelling	1
Cross-tissue enrichment patterns reveal functional clustering in normal human tissues from GTEx	1
The mouse metabolic phenotyping center (MMPC) live consortium: an NIH resource for in vivo characterization of mouse models of diabetes and obesity	1
Mapping genomic adaptation to environmental heterogeneity in Indian native goat populations through landscape genomics	1
Mapping novel QTL and fine mapping of previously identified QTL associated with glucose tolerance using the collaborative cross mice	1