OOIR: Observatory of International Research

Papers

(The median citation count of Mammalian Genome is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-11-01 to 2025-11-01.)

Article	Citations
Unraveling the maternal heritage: identifying the complex origins of indigenous Indian horse and pony breeds through mitochondrial genome analysis	46
EEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle	44
Genetic and immune landscape of keratoconus: insights from Mendelian randomization analysis	32
Glycosylated protein-related microenvironmental features in breast cancer are associated with patient prognosis	23
Standardisation and future of preclinical echocardiography	22
An interaction of inorganic arsenic exposure with body weight and composition on type 2 diabetes indicators in Diversity Outbred mice	21
Evaluation of genotype imputation using Glimpse tools on low coverage ancient DNA	20
Genetics of murine type 2 diabetes and comorbidities	19
Climate resilience in goats: a comprehensive review of the genetic basis for adaptation to varied climatic conditions	18
Comprehensive analysis reveals the prognostic and immunological role of PSMD13 in hepatocellular carcinoma	18
Genomic resources for rhesus macaques (Macaca mulatta)	18
Fine mapping and candidate gene analysis of a dravet syndrome modifier locus on mouse chromosome 11	17
AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes	17
Comparative single-cell analysis of the adult heart and coronary vasculature	17
A deletion containing a CTCF-element in intron 8 of the Bbs7 gene is partially responsible for juvenile obesity in the Berlin Fat Mouse	16
Review on camel genetic diversity: ecological and economic perspectives	15
Introduction to Mammalian Genome special issue: cardiovascular disease in the Mammalian Genome.	14
Evaluation of genomic breeding values and accuracy for carcass traits in Korean Hanwoo cows using whole-genome SNP chip panels	13
Genomic and functional conservation of lncRNAs: lessons from flies	13
Generation of a humanized mAce2 and a conditional hACE2 mouse models permissive to SARS-COV-2 infection	12
EEF1A2 identified as a hub gene associated with the severity of metabolic dysfunction-associated steatotic liver disease	12
Of mice and human-specific long noncoding RNAs	11
Alpha-synuclein pathology and Parkinson’s disease-related olfactory dysfunctions: an update on preclinical models and therapeutic approaches	11
Introduction to Mammalian Genome Special Issue: Mammalian Genetic Resources	10
Commentary: towards a national research infrastructure strategy for preclinical biological models in Australia	10

Impaired immune metabolism in COPD driven by dysfunction of CXCL16 + alveolar macrophages: multivariate causal evidence	10
Neonatal lethality of mouse A/J-7SM consomic strain is caused by an insertion mutation in the Dchs1 gene	10
IMPC impact on preclinical mouse models	10
Comprehensive overview of disease models for Wolfram syndrome: toward effective treatments	9
The mouse resource at National Resource Center for Mutant Mice of China	9
TCR CDR3 chemical complementarity to HPV epitopes is associated with a better outcome for cervical cancer	9
Elucidation of genetic determinants of dyslipidaemia using a global screening array for the early detection of coronary artery disease	8
Multi-omics dissection of RAD21-PON1 axis reveals metabolic-immune crosstalk and prognostic significance in hepatocellular carcinoma	8
A consensus score to combine inferences from multiple centres	8
A fascination with tailless mice: a scientific historical review of studies of the T/t complex	8
Transforming beef quality through healthy breeding: a strategy to reduce carcinogenic compounds and enhance human health: a review	7
Exploration of shared diagnostic genes and mechanisms between crohn’s disease and ischemic stroke by integrated comprehensive bioinformatics analysis and machine learning	7
Maternal genetic diversity and phylogenetic analysis of Indian riverine and swamp buffaloes: insights from complete mitochondrial genomes	7
Genetic insights into crossbred dairy cattle of Pakistan: exploring allele frequency, linkage disequilibrium, and effective population size at a genome-wide scale	7
Insights from homozygous signatures of cervus nippon revealed genetic architecture for components of fitness	7
Purebred dogs show higher levels of genomic damage compared to mixed breed dogs	7
Harmonizing mouse anatomy terminology: a common language?	7
Predicting the potential deterioration of Barrett’s esophagus based on gut microbiota: a Mendelian randomization analysis	6
Arginine attenuates chronic mountain sickness in rats via microRNA-144-5p	6
Three-dimensional microCT imaging of mouse heart development from early post-implantation to late fetal stages	6
Genome-wide study for signatures of selection identifies genomic regions and candidate genes associated with milk traits in sheep	6
Identification of EXO1 as a potential biomarker associated with prognosis and tumor immune microenvironment for specific human cancers	6
Challenges of modelling TDP-43 pathology in mice	6
Comprehensive analysis of chromosomal breakpoints and candidate genes associated with male infertility: insights from cytogenetic studies and expression analyses	6
E3 ubiquitin ligase COP1-mediated CEBPB ubiquitination regulates the inflammatory response of macrophages in sepsis-induced myocardial injury	6
Comparative genomic studies on the TGF-β superfamily in blue whale	6
Tachol1 QTL on mouse chromosome 1 is responsible for hypercholesterolemia and diet-induced obesity	6
Elucidation of population stratifying markers and selective sweeps in crossbred Landlly pig population using genome-wide SNP data	6
The mutant mouse resource and research center (MMRRC) consortium: the US-based public mouse repository system	6
Swine global genomic resources: insights into wild and domesticated populations	5
Genome-wide screening for genetic variants in polyadenylation signal (PAS) sites in mouse selection lines for fatness and leanness	5
Enhanced computational strategies for categorizing HER2 kinase domain variants of uncertain significance through structural and functional analysis	5
Association of gene polymorphisms in MYH11 and TGF-β signaling with the susceptibility and clinical outcomes of DeBakey type III aortic dissection	5
MicroRNA dysregulation in male infertility: Insights into mechanisms, biomarkers, and therapeutic strategies- review	5
Identification of prostate cancer associated genes for diagnosis and prognosis: a modernized in silico approach	5
Knockdown of lncRNA MIAT attenuated lipopolysaccharide-induced microglial cells injury by sponging miR-613	5
Genome engineering with Cas9 and AAV repair templates, successes and pitfalls	5
The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research	5
Echo2Pheno: a deep-learning application to uncover echocardiographic phenotypes in conscious mice	4
The interplay of hydrogen sulfide and microRNAs in cardiovascular diseases: insights and future perspectives	4
Identification of important gene signatures in schizophrenia through feature fusion and genetic algorithm	4
Mapping copy number variable regions correlated with reproduction and production traits in Karan Fries cattle mammalian genomics	4
Genetic factors underlying Mandibular prognathism: insights from recent human and animal studies	4
A comprehensive review of livestock development: insights into domestication, phylogenetics, diversity, and genomic advances	4
Inflammatory cytokines are associated with stroke and risk factors of cerebrovascular diseases: a Mendelian randomization study	4
Impact of IL-6 rs1800795 and rs1800796 polymorphisms on clinical outcomes of COVID-19: a study on severity of disease in Turkish population	4
Recent advances in the genomic resources for sheep	4
Genomic advancements in goat breeding: enhancing productivity, disease resistance, and sustainability in India’s rural economy	4
Complementarity and integration of animal and in vitro non-animal pre-clinical model systems– an Australian perspective	4
Circular RNA circMTO1 suppressed the progression of renal cell carcinoma progression by sponging miR-211 and miR-204	4

Mammalian genome research resources available from the National BioResource Project in Japan	4
Comprehensive analysis of breast cancer oxidative stress related gene signature: a combination of bulk and single-cell RNA sequencing analysis	4
Mouse phenome database: curated data repository with interactive multi-population and multi-trait analyses	4
Genome-wide insights into selection signatures for transcription factor binding sites in cattle ROH regions	3
Preclinical research (on rare diseases): we need to talk about health equity	3
Comprehensive ECG reference intervals in C57BL/6N substrains provide a generalizable guide for cardiac electrophysiology studies in mice	3
Genetic variation in the Y chromosome and sex-biased DNA methylation in somatic cells in the mouse	3
The COL6A5-p.Glu2272* mutation induces chronic itch in mice	3
Retraction Note: MiR-519d-3p enhances the sensitivity of non-small-cell lung cancer to tyrosine kinase inhibitors	3
CDC167 exhibits potential as a biomarker for airway inflammation in asthma	3
Mechanism of CREB1 in cardiac function of rats with heart failure via regulating the microRNA-376a-3p/TRAF6 axis	3
A rationale for considering heart/brain axis control in neuropsychiatric disease	3
The effect of different approaches to determining the regularization parameter of bayesian LASSO on the accuracy of genomic prediction	3
LncRNAs PSMG3-AS1 and MEG3 negatively regulate each other to participate in endometrial carcinoma cell proliferation	3
Intestinal cancer development in response to oral infection with high-fat diet-induced Type 2 diabetes (T2D) in collaborative cross mice under different host genetic background effects	3
Telemedical monitoring in patients with inborn cardiac disease – experience of a tertiary care centre	3
The alliance of genome resources: transforming comparative genomics	3
Canine models of inherited retinal diseases: from neglect to well-recognized translational value	3
Retraction Note: CircRNA circ-ATAD1 is downregulated in endometrial cancer and suppresses cell invasion and migration by downregulating miR-10a through methylation	3
Genetic factors underlying host resistance to Rhipicephalus microplus tick infestation in Braford cattle: a systems biology perspective	3
Retraction Note: Circ_0069718 promotes the progression of breast cancer by up-regulating NFIB through sequestering miR-590-5p	3
Online Mendelian Inheritance in Animals (OMIA): a genetic resource for vertebrate animals	3
GWAS reveals genomic associations with swine inflammation and necrosis syndrome	3
Retraction Note: Overexpression of ROCK1 promotes cancer cell proliferation and is associated with poor prognosis in human urothelial bladder cancer	2
Whole-genome sequencing and genomic analysis of Norduz goat (Capra hircus)	2
Mapping novel QTL and fine mapping of previously identified QTL associated with glucose tolerance using the collaborative cross mice	2
Assessing the causal relationship between immune cells and prostatitis: evidence from bidirectional mendelian randomization analysis	2
The birth of piRNAs: how mammalian piRNAs are produced, originated, and evolved	2
The RSPO2 gene is associated with bilateral anterior amelia in Chihuahuas	2
Generation and characterization of a knock-in mouse model for spastic tetraplegia, thin corpus callosum, and progressive microcephaly (SPATCCM)	2
The spontaneous mouse mutant low set ears (Lse) is caused by tandem duplication of Fgf3 and Fgf4	2
Mutation of the Thap4 gene causes dwarfism and testicular anomalies in rats and mice	2
In search of epigenetic hallmarks of different tissues: an integrative omics study of horse liver, lung, and heart	2
Genome-wide selective sweep analysis in high-altitude Changthangi goats reveals candidate genes for pashmina fiber production	2
Pyroptosis is involved in the immune microenvironment regulation of unexplained recurrent miscarriage	2
Prune homolog 2 with BCH domain (PRUNE2) gene expression is associated with feed efficiency-related traits in Nelore steers	2
Identification of novel biomarkers for atherosclerosis using single-cell RNA sequencing and machine learning	2
Unraveling the genetic and physiological potential of donkeys: insights from genomics, proteomics, and metabolomics approaches	2
What to consider for ECG in mice—with special emphasis on telemetry	2
LncRNAs at the heart of development and disease	1
Identification of genetic biomarkers of blood cholesterol levels using whole gene pathogenicity modelling	1
Identification of cis-sQTL demonstrates genetic associations and functional implications of inflammatory processes in Nelore cattle muscle tissue	1
Revealing the key role of cuproptosis in osteoporosis via the bioinformatic analysis and experimental validation of cuproptosis-related genes	1
Retraction Note to: miR-217-5p inhibits invasion and metastasis of prostate cancer by targeting clusterin	1
Lessons from the functional characterization of lncRNAs: introduction to mammalian genome special issue	1
Genetic diversity of North African populations in the 17q21 genomic region	1
Mouse genomic and cellular annotations	1
Gut metabolites and functional recovery after ischemic stroke: a genetic perspective	1
LncRNAs in domesticated animals: from dog to livestock species	1
Commentary: The International Mouse Phenotyping Consortium: high-throughput in vivo functional annotation of the mammalian genome	1
Prdm9 deficiency of rat oocytes causes synapsis among non-homologous chromosomes and aneuploidy	1
The mouse metabolic phenotyping center (MMPC) live consortium: an NIH resource for in vivo characterization of mouse models of diabetes and obesity	1
Causal relationship between imaging-derived phenotypes and neurodegenerative diseases: a Mendelian randomization study	1
Low-coverage whole-genome sequencing facilitates accurate and cost-effective haplotype reconstruction in complex mouse crosses	1
MicroRNA expression profiling of ovine epithelial cells stimulated with the Staphylococcus aureus in vitro	1
Mitral valve transcriptome analysis in thirty-four age-matched Cavalier King Charles Spaniels with or without congestive heart failure caused by myxomatous mitral valve disease	1
The mouse resource at National Resource Center for Mutant Mice	1
Runs of homozygosity and signatures of selection for number of oocytes and embryos in the Gir Indicine cattle	1
Retraction Note: LncRNA TLR8-AS1 suppresses miR-34a maturation in hepatocellular carcinoma to suppress cell proliferation and migration	1
Correction: Canine models of inherited retinal diseases: from neglect to well-recognized translational value	1
Beyond black and white: dissecting the genetic basis of skin depigmentation in Nellore cattle	1
Identification of biomarkers associated with phagocytosis regulatory factors in coronary artery disease using machine learning and network analysis	1
Cataloging copy number variation regions and allied diversity in goat breeds spanning pan India	1
Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data	1
Transcriptome studies of inherited dilated cardiomyopathies	1
Promises and challenges of cardiac organoids	1
RMRP inhibition prevents NAFLD progression in rats via regulating miR-206/PTPN1 axis	1
Genomic patterns of selection in morphometric traits across diverse Indian cattle breeds	1
Comprehensive identification of crucial biomarkers and therapeutic targets in cholestasis via integrated single-cell RNA and transcriptome sequencing analysis	1
Diverse wild-derived inbred strains provide a new community resource	1
LncRNA NEAT1 sponges miR-214 to promoted tumor growth in hepatocellular carcinoma	1
Polygenic control of the wavy coat of the NCT mouse: involvement of an intracisternal A particle insertional mutation of the protease, serine 53 (Prss53) gene, and a modifier gene	1
Exploring the mediating role of immune cells in the pathogenesis of IgA nephropathy through the inflammatory axis of gut microbiota from a genomic perspective	1
A graph theoretical approach to experimental prioritization in genome-scale investigations	1
Exploring the therapeutic effect of melatonin targeting common biomarkers in testicular germ cell tumor, prostate adenocarcinoma, and male infertility: an integrated biology approach	1
Understanding PACS2 syndrome’s pathomechanism by studying E209K and E211K mutations	1
Age-associated changes in gene expression in the anterior pituitary glands of female Japanese black cattle	1