OOIR: Observatory of International Research

Papers

(The median citation count of Mammalian Genome is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Host genetic control of gut microbiome composition	46
The gut microbiome of laboratory mice: considerations and best practices for translational research	43
Significance of lncRNA abundance to function	35
Metagenomics: a path to understanding the gut microbiome	33
Mouse Genome Informatics (MGI): latest news from MGD and GXD	33
ALKBH5-mediated m6A demethylation of lncRNA RMRP plays an oncogenic role in lung adenocarcinoma	30
The birth of piRNAs: how mammalian piRNAs are produced, originated, and evolved	28
The alliance of genome resources: transforming comparative genomics	23
Genomic and functional conservation of lncRNAs: lessons from flies	23
The Mutant Mouse Resource and Research Center (MMRRC): the NIH-supported National Public Repository and Distribution Archive of Mutant Mouse Models in the USA	21
A review on the role of gut microbiota in immune checkpoint blockade therapy for cancer	20
Circular RNA circNRIP1 plays oncogenic roles in the progression of osteosarcoma	18
Progress towards completing the mutant mouse null resource	18
Mouse models of aneuploidy to understand chromosome disorders	18
The human urobiome	17
The ring finger protein 213 gene (Rnf213) contributes to Rift Valley fever resistance in mice	17
Genetics of murine type 2 diabetes and comorbidities	17
Getting to the bottom of lncRNA mechanism: structure–function relationships	17
LncRNAs in domesticated animals: from dog to livestock species	17
The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research	16
Gabra2 is a genetic modifier of Dravet syndrome in mice	16
SAF-A mutants disrupt chromatin structure through dominant negative effects on RNAs associated with chromatin	13
RETRACTED ARTICLE: miR-217-5p Inhibits Invasion and Metastasis of Prostate Cancer by Targeting Clusterin	13
LncRNAs at the heart of development and disease	13
The microbiome and rodent models of immune mediated diseases	12

TUG1 knockdown suppresses cardiac fibrosis after myocardial infarction	12
Best practices for analyzing imputed genotypes from low-pass sequencing in dogs	12
Knockout mouse models as a resource for the study of rare diseases	11
A novel knockout mouse for the small EDRK-rich factor 2 (Serf2) showing developmental and other deficits	11
Knockdown of lncRNA LUCAT1 attenuates sepsis‑induced myocardial cell injury by sponging miR-642a	10
The Ontology of Biological Attributes (OBA)—computational traits for the life sciences	10
LncRNA NEAT1 sponges miR-214 to promoted tumor growth in hepatocellular carcinoma	10
RETRACTED ARTICLE: CircRNA circ-ATAD1 is downregulated in endometrial cancer and suppresses cell invasion and migration by downregulating miR-10a through methylation	10
What to consider for ECG in mice—with special emphasis on telemetry	9
Taxonomic composition and variation in the gut microbiota of laboratory mice	9
MoG+: a database of genomic variations across three mouse subspecies for biomedical research	9
Methods for vascularization and perfusion of tissue organoids	9
Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data	9
RMRP inhibition prevents NAFLD progression in rats via regulating miR-206/PTPN1 axis	9
Of mice and human-specific long noncoding RNAs	8
Genomic resources for rhesus macaques (Macaca mulatta)	8
Swine models for translational oncological research: an evolving landscape and regulatory considerations	8
Annotated expression and activity data for murine recombinase alleles and transgenes: the CrePortal resource	8
SNPs at 3′UTR of APOL1 and miR-6741-3p target sites associated with kidney diseases more susceptible to SARS-COV-2 infection: in silco and in vitro studies	8
Mouse phenome database: curated data repository with interactive multi-population and multi-trait analyses	7
A comprehensive phenotypic characterization of a whole-body Wdr45 knock-out mouse	7
Bivariate GWAS reveals pleiotropic regions among feed efficiency and beef quality-related traits in Nelore cattle	7
Differential protein input in the maternal diet alters the skeletal muscle transcriptome in fetal sheep	7
LncRNA DRAIR is a novel prognostic and diagnostic biomarker for gastric cancer	7
Regulatory roles of nucleolus organizer region-derived long non-coding RNAs	7
Recent advances in the genomic resources for sheep	6
WTAP mediates FOXP3 mRNA stability to promote SMARCE1 expression and augment glycolysis in colon adenocarcinoma	6
ArcRNAs and the formation of nuclear bodies	6
RETRACTED ARTICLE: CircRNA_0043691 sponges miR-873-3p to promote metastasis of gastric cancer	6
New insights into the microbiota of wild mice	6
Inactivation of testis-specific gene C4orf46 is dispensable for spermatogenesis and fertility in mouse	5
Mouse models of spontaneous atrial fibrillation	5
A deletion containing a CTCF-element in intron 8 of the Bbs7 gene is partially responsible for juvenile obesity in the Berlin Fat Mouse	5
Fine mapping and candidate gene analysis of a dravet syndrome modifier locus on mouse chromosome 11	5
Intestinal cancer development in response to oral infection with high-fat diet-induced Type 2 diabetes (T2D) in collaborative cross mice under different host genetic background effects	5
RETRACTED ARTICLE: Overexpression of ROCK1 promotes cancer cell proliferation and is associated with poor prognosis in human urothelial bladder cancer	5
Novel mutations in the signal transducer and activator of transcription 3 gene are associated with sheep body weight and fatness traits	5
Importing genetically altered animals: ensuring quality	5
Bridging mouse and human anatomies; a knowledge-based approach to comparative anatomy for disease model phenotyping	5
Molecular determination of progesterone receptor’s PROGINS allele (Alu insertion) and its association with the predisposition and susceptibility to polycystic ovary syndrome (PCOS)	5
Mouse resources at the RIKEN BioResource Research Center and the National BioResource Project core facility in Japan	5
Inactive rhomboid proteins RHBDF1 and RHBDF2 (iRhoms): a decade of research in murine models	5
A rationale for considering heart/brain axis control in neuropsychiatric disease	5
An interaction of inorganic arsenic exposure with body weight and composition on type 2 diabetes indicators in Diversity Outbred mice	5
Pleiotropy data resource as a primer for investigating co-morbidities/multi-morbidities and their role in disease	4
INFRAFRONTIER quality principles in systemic phenotyping	4
DLGAP1-AS2 promotes human colorectal cancer progression through trans-activation of Myc	4
Alternative exon splicing and differential expression in pancreatic islets reveals candidate genes and pathways implicated in early diabetes development	4
Comprehensive ECG reference intervals in C57BL/6N substrains provide a generalizable guide for cardiac electrophysiology studies in mice	4
The circular RNA circCRIM1 inhibits osteosarcoma progression through sponging miR-513	4

Approaching precision medicine by tailoring the microbiota	4
Knockdown of UCA1 attenuated the progression of alcoholic fatty disease by sponging miR-214	4
Silencing circ_0074371 inhibits the progression of sepsis-induced acute kidney injury by regulating miR-330-5p/ELK1 axis	4
Systems genetics analysis of oral squamous cell carcinoma susceptibility using the mouse model: current position and new perspective	4
Single-step genome-wide association studies and post-GWAS analyses for the number of oocytes and embryos in Gir cattle	4
The miR-302s/367 Cluster Inhibits the Proliferation and Apoptosis in Sheep Fetal Fibroblasts via the Cell Cycle and PI3K-Akt Pathways	4
Circ_0000442 functions as a tumor repressor in breast cancer by impacting miR-1229-3p and upregulating ZBTB1	4
Circular RNA circMTO1 suppressed the progression of renal cell carcinoma progression by sponging miR-211 and miR-204	4
Multiple genome viewer (MGV): a new tool for visualization and comparison of multiple annotated genomes	4
Alopecia in Harlequin mutant mice is associated with reduced AIF protein levels and expression of retroviral elements	4
Genomic distribution and polymorphism of G-quadruplex motifs occupying ovine promoters and enhancers	3
Sequence and haplotypes of ankyrin 1 gene (ANK1) and their association with carcass and meat quality traits in yak	3
Reversion mutation of cDNA CA8-204 minigene construct produces a truncated functional peptide that regulates calcium release in vitro and produces profound analgesia in vivo	3
The mouse resource at National Resource Center for Mutant Mice	3
Standardisation and future of preclinical echocardiography	3
Mouse genomic and cellular annotations	3
Essential genes: a cross-species perspective	3
RETRACTED ARTICLE: MiR-519d-3p enhances the sensitivity of non-small-cell lung cancer to tyrosine kinase inhibitors	3
Rat Models of Human Diseases and Related Phenotypes: A Novel Inventory of Causative Genes	3
Arginine attenuates chronic mountain sickness in rats via microRNA-144-5p	3
Asian Mouse Mutagenesis Resource Association (AMMRA): mouse genetics and laboratory animal resources in the Asia Pacific	3
Comparative single-cell analysis of the adult heart and coronary vasculature	3
Missing heritability of Wilson disease: a search for the uncharacterized mutations	3
Genetic variation in the Y chromosome and sex-biased DNA methylation in somatic cells in the mouse	3
Nucleotide spacing distribution analysis for human genome	3
Promises and challenges of cardiac organoids	3
Three-dimensional microCT imaging of mouse heart development from early post-implantation to late fetal stages	3
Mutational analyses of novel rat models with targeted modifications in inflammatory bowel disease susceptibility genes	3
Association of gene polymorphisms in MYH11 and TGF-β signaling with the susceptibility and clinical outcomes of DeBakey type III aortic dissection	3
The calcimedin annexin A3 displays tumor-promoting effect in esophageal squamous cell carcinoma by activating NF-κB signaling	3
Designing libraries for pooled CRISPR functional screens of long noncoding RNAs	3
INFRAFRONTIER: mouse model resources for modelling human diseases	3
Identification of genetic variants affecting reproduction traits in Vrindavani cattle	3
Ratpost: a searchable database of protein-inactivating sequence variations in 40 sequenced rat-inbred strains	2
Intramuscular injection of tetracycline decreased gut microbial diversity in mouse	2
Genome-wide screening for genetic variants in polyadenylation signal (PAS) sites in mouse selection lines for fatness and leanness	2
A nonsense mutation in mouse Adamtsl2 causes uterine hypoplasia and an irregular estrous cycle	2
The regulation mechanisms and the Lamarckian inheritance property of DNA methylation in animals	2
A map of canine sequence variation relative to a Greenland wolf outgroup	2
LncRNAs PSMG3-AS1 and MEG3 negatively regulate each other to participate in endometrial carcinoma cell proliferation	2
Knockout of the Complex III subunit Uqcrh causes bioenergetic impairment and cardiac contractile dysfunction	2
Transcriptome studies of inherited dilated cardiomyopathies	2
Echo2Pheno: a deep-learning application to uncover echocardiographic phenotypes in conscious mice	2
Runs of homozygosity and signatures of selection for number of oocytes and embryos in the Gir Indicine cattle	2
Adipose tissue depot specific expression and regulation of fibrosis-related genes and proteins in experimental obesity	2
RETRACTED ARTICLE: Circ_0069718 promotes the progression of breast cancer by up-regulating NFIB through sequestering miR-590-5p	2
Murine allele and transgene symbols: ensuring unique, concise, and informative nomenclature	2
Learning noncoding RNA biology from viruses	2
Genetic controls of Tas1r3-independent sucrose consumption in mice	2
34th International mammalian genome conference: meeting overview	2
EGFR and MMP-9 are associated with neointimal hyperplasia in systemic-to-pulmonary shunts in children with complex cyanotic heart disease	2
AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes	2
Introduction to mammalian genome special issue: the microbiome in human health and disease	2
Mechanism of CREB1 in cardiac function of rats with heart failure via regulating the microRNA-376a-3p/TRAF6 axis	2