OOIR: Observatory of International Research

Papers

(The median citation count of Mammalian Genome is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Epigenetic contribution to obesity	39
Nutrition and its role in epigenetic inheritance of obesity and diabetes across generations	37
Host genetic control of gut microbiome composition	33
The gut microbiome of laboratory mice: considerations and best practices for translational research	31
ALKBH5-mediated m6A demethylation of lncRNA RMRP plays an oncogenic role in lung adenocarcinoma	28
Mouse Genome Informatics (MGI): latest news from MGD and GXD	27
Metagenomics: a path to understanding the gut microbiome	26
The birth of piRNAs: how mammalian piRNAs are produced, originated, and evolved	20
Significance of lncRNA abundance to function	20
Genomic and functional conservation of lncRNAs: lessons from flies	17
A review on the role of gut microbiota in immune checkpoint blockade therapy for cancer	17
Epigenetics and genome stability	17
Circular RNA circNRIP1 plays oncogenic roles in the progression of osteosarcoma	16
A scan for genes associated with cancer mortality and longevity in pedigree dog breeds	15
Progress towards completing the mutant mouse null resource	15
Genetics of murine type 2 diabetes and comorbidities	14
Getting to the bottom of lncRNA mechanism: structure–function relationships	14
Mouse models of aneuploidy to understand chromosome disorders	14
The ring finger protein 213 gene (Rnf213) contributes to Rift Valley fever resistance in mice	14
RETRACTED ARTICLE: miR-217-5p Inhibits Invasion and Metastasis of Prostate Cancer by Targeting Clusterin	12
The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research	12
The human urobiome	12
TUG1 knockdown suppresses cardiac fibrosis after myocardial infarction	11
Gabra2 is a genetic modifier of Dravet syndrome in mice	11
RETRACTED ARTICLE: CircRNA circ-ATAD1 is downregulated in endometrial cancer and suppresses cell invasion and migration by downregulating miR-10a through methylation	10

The Mutant Mouse Resource and Research Center (MMRRC): the NIH-supported National Public Repository and Distribution Archive of Mutant Mouse Models in the USA	10
Advances of single-cell genomics and epigenomics in human disease: where are we now?	9
LncRNAs at the heart of development and disease	9
Taxonomic composition and variation in the gut microbiota of laboratory mice	9
A novel knockout mouse for the small EDRK-rich factor 2 (Serf2) showing developmental and other deficits	9
Nuclear factor NF-κB1 functional promoter polymorphism and its expression conferring the risk of Type 2 diabetes-associated dyslipidemia	9
The microbiome and rodent models of immune mediated diseases	9
PKM2 ablation enhanced retinal function and survival in a preclinical model of retinitis pigmentosa	9
Best practices for analyzing imputed genotypes from low-pass sequencing in dogs	9
LncRNA NEAT1 sponges miR-214 to promoted tumor growth in hepatocellular carcinoma	9
The Ontology of Biological Attributes (OBA)—computational traits for the life sciences	8
LncRNAs in domesticated animals: from dog to livestock species	8
Tissue-specific epigenetic inheritance after paternal heat exposure in male wild guinea pigs	8
RMRP inhibition prevents NAFLD progression in rats via regulating miR-206/PTPN1 axis	8
Knockdown of lncRNA LUCAT1 attenuates sepsis‑induced myocardial cell injury by sponging miR-642a	8
LncRNA DRAIR is a novel prognostic and diagnostic biomarker for gastric cancer	7
Regulatory roles of nucleolus organizer region-derived long non-coding RNAs	7
SNPs at 3′UTR of APOL1 and miR-6741-3p target sites associated with kidney diseases more susceptible to SARS-COV-2 infection: in silco and in vitro studies	7
Bivariate GWAS reveals pleiotropic regions among feed efficiency and beef quality-related traits in Nelore cattle	6
RETRACTED ARTICLE: CircRNA_0043691 sponges miR-873-3p to promote metastasis of gastric cancer	6
Swine models for translational oncological research: an evolving landscape and regulatory considerations	6
Genomic resources for rhesus macaques (Macaca mulatta)	6
WTAP mediates FOXP3 mRNA stability to promote SMARCE1 expression and augment glycolysis in colon adenocarcinoma	5
Of mice and human-specific long noncoding RNAs	5
Differential protein input in the maternal diet alters the skeletal muscle transcriptome in fetal sheep	5
Annotated expression and activity data for murine recombinase alleles and transgenes: the CrePortal resource	5
SAF-A mutants disrupt chromatin structure through dominant negative effects on RNAs associated with chromatin	5
The alliance of genome resources: transforming comparative genomics	5
Novel mutations in the signal transducer and activator of transcription 3 gene are associated with sheep body weight and fatness traits	5
Methods for vascularization and perfusion of tissue organoids	5
The miR-302s/367 Cluster Inhibits the Proliferation and Apoptosis in Sheep Fetal Fibroblasts via the Cell Cycle and PI3K-Akt Pathways	4
ArcRNAs and the formation of nuclear bodies	4
DLGAP1-AS2 promotes human colorectal cancer progression through trans-activation of Myc	4
Genetic control of non-genetic inheritance in mammals: state-of-the-art and perspectives	4
The circular RNA circCRIM1 inhibits osteosarcoma progression through sponging miR-513	4
RETRACTED ARTICLE: Overexpression of ROCK1 promotes cancer cell proliferation and is associated with poor prognosis in human urothelial bladder cancer	4
MoG+: a database of genomic variations across three mouse subspecies for biomedical research	4
Circular RNA circMTO1 suppressed the progression of renal cell carcinoma progression by sponging miR-211 and miR-204	4
Eukaryotic translation initiation factor 3 subunit b is a novel oncogenic factor in prostate cancer	4
Inactivation of testis-specific gene C4orf46 is dispensable for spermatogenesis and fertility in mouse	4
Diversification of CpG-Island Promoters Revealed by Comparative Analysis Between Human and Rhesus Monkey Genomes	4
New insights into the microbiota of wild mice	4
A comprehensive phenotypic characterization of a whole-body Wdr45 knock-out mouse	4
Circ_0000442 functions as a tumor repressor in breast cancer by impacting miR-1229-3p and upregulating ZBTB1	3
Comprehensive selection signature analyses in dairy cattle exploiting purebred and crossbred genomic data	3
A deletion containing a CTCF-element in intron 8 of the Bbs7 gene is partially responsible for juvenile obesity in the Berlin Fat Mouse	3
Association of gene polymorphisms in MYH11 and TGF-β signaling with the susceptibility and clinical outcomes of DeBakey type III aortic dissection	3
Sequence and haplotypes of ankyrin 1 gene (ANK1) and their association with carcass and meat quality traits in yak	3
INFRAFRONTIER quality principles in systemic phenotyping	3
Knockdown of UCA1 attenuated the progression of alcoholic fatty disease by sponging miR-214	3

What to consider for ECG in mice—with special emphasis on telemetry	3
An interaction of inorganic arsenic exposure with body weight and composition on type 2 diabetes indicators in Diversity Outbred mice	3
Nucleotide spacing distribution analysis for human genome	3
Mouse models of spontaneous atrial fibrillation	3
Inactive rhomboid proteins RHBDF1 and RHBDF2 (iRhoms): a decade of research in murine models	3
The calcimedin annexin A3 displays tumor-promoting effect in esophageal squamous cell carcinoma by activating NF-κB signaling	3
Systems genetics analysis of oral squamous cell carcinoma susceptibility using the mouse model: current position and new perspective	3
Designing libraries for pooled CRISPR functional screens of long noncoding RNAs	2
Pleiotropy data resource as a primer for investigating co-morbidities/multi-morbidities and their role in disease	2
Three-dimensional microCT imaging of mouse heart development from early post-implantation to late fetal stages	2
Ratpost: a searchable database of protein-inactivating sequence variations in 40 sequenced rat-inbred strains	2
Knockout mouse models as a resource for the study of rare diseases	2
34th International mammalian genome conference: meeting overview	2
Silencing circ_0074371 inhibits the progression of sepsis-induced acute kidney injury by regulating miR-330-5p/ELK1 axis	2
Importing genetically altered animals: ensuring quality	2
A rationale for considering heart/brain axis control in neuropsychiatric disease	2
Creation and characterization of an immortalized canine myoblast cell line: Myok9	2
Mouse genomic and cellular annotations	2
Essential genes: a cross-species perspective	2
Bridging mouse and human anatomies; a knowledge-based approach to comparative anatomy for disease model phenotyping	2
Approaching precision medicine by tailoring the microbiota	2
Mechanism of CREB1 in cardiac function of rats with heart failure via regulating the microRNA-376a-3p/TRAF6 axis	2
Mouse resources at the RIKEN BioResource Research Center and the National BioResource Project core facility in Japan	2
Intramuscular injection of tetracycline decreased gut microbial diversity in mouse	2
Genetic controls of Tas1r3-independent sucrose consumption in mice	2
The regulation mechanisms and the Lamarckian inheritance property of DNA methylation in animals	2
Multiple genome viewer (MGV): a new tool for visualization and comparison of multiple annotated genomes	2
RETRACTED ARTICLE: Circ_0069718 promotes the progression of breast cancer by up-regulating NFIB through sequestering miR-590-5p	2
The mouse resource at National Resource Center for Mutant Mice	2
Molecular determination of progesterone receptor’s PROGINS allele (Alu insertion) and its association with the predisposition and susceptibility to polycystic ovary syndrome (PCOS)	2
Alopecia in Harlequin mutant mice is associated with reduced AIF protein levels and expression of retroviral elements	2
Learning noncoding RNA biology from viruses	2
Missing heritability of Wilson disease: a search for the uncharacterized mutations	2
33rd international mammalian genome conference: meeting highlights	2
RETRACTED ARTICLE: MiR-519d-3p enhances the sensitivity of non-small-cell lung cancer to tyrosine kinase inhibitors	2
Mutational analyses of novel rat models with targeted modifications in inflammatory bowel disease susceptibility genes	2
Runs of homozygosity and signatures of selection for number of oocytes and embryos in the Gir Indicine cattle	2
Alternative exon splicing and differential expression in pancreatic islets reveals candidate genes and pathways implicated in early diabetes development	2
Fine mapping and candidate gene analysis of a dravet syndrome modifier locus on mouse chromosome 11	2
Introduction to mammalian genome special issue: the microbiome in human health and disease	2
Intestinal cancer development in response to oral infection with high-fat diet-induced Type 2 diabetes (T2D) in collaborative cross mice under different host genetic background effects	2