OOIR: Observatory of International Research

Papers

(The median citation count of Research in Microbiology is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Corynebacterium rouxii sp. nov., a novel member of the diphtheriae species complex	42
Quorum sensing: its role in microbial social networking	35
Antioxidative system of Deinococcus radiodurans	32
Fungal infections diagnosis – Past, present and future	29
Volatile organic compounds produced by Aureobasidium pullulans induce electrolyte loss and oxidative stress in Botrytis cinerea and Alternaria alternata	22
Proposal for reunification of the genus Raoultella with the genus Klebsiella and reclassification of Raoultella electrica as Klebsiella electrica comb. nov.	21
Combined antimicrobial use of essential oils and bacteriocin bacLP17 as seafood biopreservative to control Listeria monocytogenes both in planktonic and in sessile forms	20
Amino acids are key substrates to Escherichia coli BW25113 for achieving high specific growth rate	18
Auxin biosynthesis in the phytopathogenic fungus Leptosphaeria maculans is associated with enhanced transcription of indole-3-pyruvate decarboxylase LmIPDC2 and tryptophan aminotransferase LmTAM1	17
Biodiversity and richness shifts of mucosa-associated gut microbiota with progression of colorectal cancer	17
Pentadecanoic acid against Candida albicans-Klebsiella pneumoniae biofilm: towards the development of an anti-biofilm coating to prevent polymicrobial infections	17
Escherichia coli enhances the virulence factors of Candida albicans, the cause of vulvovaginal candidiasis, in a dual bacterial/fungal biofilm	17
Quinones: more than electron shuttles	16
Bacteriophage therapy: recent developments and applications of a renaissant weapon	16
Vancomycin-resistant Enterococcus faecium and the emergence of new sequence types associated with hospital infection	14
Occurrence of filamentous fungi in drinking water: their role on fungal-bacterial biofilm formation	14
Copper limiting threshold in the terrestrial ammonia oxidizing archaeon Nitrososphaera viennensis	12
Involvement of amyloid proteins in the formation of biofilms in the pathogenic yeast Candida albicans	12
Haloarchaea have a high genomic diversity for the biosynthesis of carotenoids of biotechnological interest	12
Type VI secretion system is not required for virulence on rice but for inter-bacterial competition in Xanthomonas oryzae pv. oryzicola	12
Bacterial exopolysaccharides as emerging bioactive macromolecules: from fundamentals to applications	12
First insights to the microbial communities in the plant process water of the multi-metal Kevitsa mine	12
Morpholinium-based ionic liquids show antimicrobial activity against clinical isolates of Pseudomonas aeruginosa	11
Distribution of carbapenem resistant Acinetobacter baumannii with blaADC-30 and induction of ADC-30 in response to beta-lactam antibiotics	11
Bacteriophages that infect Gram-negative bacteria as source of signal-arrest-release motif lysins	11

SwrA as global modulator of the two-component system DegSU in Bacillus subtilis	11
Tightly controlled response to oxidative stress; an important factor in the tolerance of Bacteroides fragilis	10
The histone acetyltransferase FocGCN5 regulates growth, conidiation, and pathogenicity of the banana wilt disease causal agent Fusarium oxysporum f.sp. cubense tropical race 4	9
Isolation, characterization, and efficacy of bacteriophages isolated against Citrobacter spp. an in vivo approach in a zebrafish model (Danio rerio)	9
Dividing subpopulation of Escherichia coli in stationary phase	9
An effective culturomics approach to study the gut microbiota of mammals	9
Antisense peptide nucleic acid inhibits the growth of KPC-producing Klebsiella pneumoniae strain	9
Efficient method for targeted gene disruption by homologous recombination in Mycobacterium avium subspecie paratuberculosis	8
Effect of bile on growth and biofilm formation of non-typhoidal salmonella serovars isolated from seafood and poultry	8
A novel ItrA4 d-galactosyl 1-phosphate transferase is predicted to initiate synthesis of an amino sugar-lacking K92 capsular polysaccharide of Acinetobacter baumannii B8300	8
The extremely halophilic archaeon Halobacterium salinarum ETD5 from the solar saltern of Sfax (Tunisia) produces multiple halocins	8
Escherichia coli O-antigen capsule (group 4) is essential for serum resistance	8
Molecular and physiological analysis of indole-3-acetic acid degradation in Bradyrhizobium japonicum E109	8
The persistence of time: the lifespan of Bacillus anthracis spores in environmental reservoirs	8
Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry	8
N6-methyladenine and epigenetic immunity of Deinococcus radiodurans	8
Type III effectors xopN and avrBS2 contribute to the virulence of Xanthomonas oryzae pv. oryzicola strain GX01	7
Effect of inoculum history, growth substrates and yeast extract addition on inhibition of Sulfobacillus thermosulfidooxidans by NaCl	7
High reduction of staphylococcal biofilm by aqueous extract from marine sponge-isolated Enterobacter sp.	7
Cross-correlating analyses of mineral-associated microorganisms in an unsaturated packed bed flow-through column test; cell number, activity and EPS	7
Secretion systems play a critical role in resistance to predation by Bdellovibrio bacteriovorus	7
Signalling mechanisms involved in stress response to antifungal drugs	7
Biofilm formation by ST17 and ST19 strains of Streptococcus agalactiae	7
Involvement of serine / threonine protein kinases in DNA damage response and cell division in bacteria	7
Improved eradication efficacy of a combination of newly identified antimicrobial agents in C. albicans and S. aureus mixed-species biofilm	7
Novel strains of Klebsiella africana and Klebsiella pneumoniae in Australian fruit bats (Pteropus poliocephalus)	7
Proteomic comparison of biofilm vs. planktonic Staphylococcus epidermidis cells suggests key metabolic differences between these conditions	7
Staphylococcus aureus surface protein G (sasG) allelic variants: correlation between biofilm formation and their prevalence in methicillin-resistant S. aureus (MRSA) clones	6
Doderlin: isolation and characterization of a broad-spectrum antimicrobial peptide from Lactobacillus acidophilus	6
Redox stress response and UV tolerance in the acidophilic iron-oxidizing bacteria Leptospirillum ferriphilum and Acidithiobacillus ferrooxidans	6
Carvacrol modulates the expression and activity of antioxidant enzymes in Candida auris	6
Formation and use of biogenic jarosite carrier for high-rate iron oxidising biofilms	6
Study of the relationship between extracellular superoxide and glutathione production in batch cultures of Escherichia coli	6
Phylogenomics and comparative genomic analyses support the creation of the novel family Ignatzschineriaceae fam. nov. comprising the genera Ignatzschineria and Wohlfahrtiimonas within the order Cardio	6
The protein–protein interaction network of the Escherichia coli EIIANtr regulatory protein reveals a role in cell motility and metabolic control	6
Polyamine depletion has global effects on stress and virulence gene expression and affects HilA translation in Salmonella enterica serovar typhimurium	6
Antimicrobial peptides against drug resistant Mycobacterium abscessus	6
Assessment of the growth inhibition and anti-biofilm activity of aptamer (PmA2G02) against Proteus mirabilis 1429T	6
Cadaverine biosynthesis contributes to decreased Escherichia coli susceptibility to antibiotics	6
New insight into the relationship between Salmonella Typhimurium and the German cockroach suggests active mechanisms of vector-borne transmission	6
Analysis of AcrB in Klebsiella pneumoniae reveals natural variants promoting enhanced multidrug resistance	5
Microbial community composition in iron deposits and manganese crusts formed in riverine environments around the Aso area in Japan	5
Silencing acpP gene via antisense oligonucleotide-niosome complex in clinical Pseudomonas aeruginosa isolates	5
Study of the early response of Escherichia coli lpcA and ompF mutants to ciprofloxacin	5
Biochemical and molecular mechanisms of antibiotic resistance in Salmonella spp.	5
Isoprene production by Rhodobacter sphaeroides and its antimicrobial activity	5
Systematic transcriptome analysis allows the identification of new type I and type II Toxin/Antitoxin systems located in the superintegron of Vibrio cholerae	5
Effect of actinorhizal root exudates on the proteomes of Frankia soli NRRL B-16219, a strain colonizing the root tissues of its actinorhizal host via intercellular pathway	5
Biofilm formation and social interaction of Leptospira in natural and artificial environments	5
Comparative proteomics reveals essential mechanisms for osmotolerance in Gluconacetobacter diazotrophicus	5

Diverse Enterococcus faecalis strains show heterogeneity in biofilm properties	5
Genomic analysis of Chryseobacterium indologenes and conformational dynamics of the selected DD-peptidase	5
Involvement of RNA chaperone hfq in the regulation of antibiotic resistance and virulence in Shigella sonnei	5
Between computational predictions and high-throughput transcriptional profiling: in depth expression analysis of the OppB trans-membrane subunit of Escherichia coli OppABCDF oligopeptide transporter	5
Core genome multilocus sequence typing scheme for Bacillus cereus group bacteria	4
AmpR is a dual regulator in Stenotrophomonas maltophilia with a positive role in β-lactam resistance and a negative role in virulence, biofilm and DSF production	4
Applied of actinobacteria consortia-based bioremediation to restore co-contaminated systems	4
Sulfoacidibacillus ferrooxidans, gen. nov., sp. nov., Sulfoacidibacillus thermotolerans, gen. nov., sp. nov., and Ferroacidibacillus organovorans, gen. nov., sp. nov.: Extremely acidophilic chemolitho	4
Effects of sub-lethal doses of nisin on the virulence of Salmonella enterica in Galleria mellonella larvae	4
Research on DnaA in the early days	4
Beyond membrane components: uncovering the intriguing world of fungal sphingolipid synthesis and regulation	4
Transcription factor mce3R modulates antibiotics and disease persistence in Mycobacterium tuberculosis	4
SopA inactivation or reduced expression is selected in intracellular Salmonella and contributes to systemic Salmonella infection	4
Isolation and characterization of a novel acidophilic zero-valent sulfur- and ferric iron-respiring Firmicute	4
Sporulation efficiency and spore quality in a human intestinal isolate of Bacillus cereus	4
Role of a fasciclin domain protein in photooxidative stress and flocculation in Azospirillum brasilense Sp7	4
Functional analysis and enzyme characterization of mannose-1-phosphate guanylyl transferase (ManB) from Mycobacterium tuberculosis	3
Effect of the combinatorial iron-chelation and oxidative stress on the growth of Aspergillus species	3
Decoding whole genome of Anoxybacillus rupiensis TPH1 isolated from tatapani hot spring, India and giving insight into bioremediation ability of TPH1 via heavy metals and azo dyes	3
Overview of protein phosphorylation in bacteria with a main focus on unusual protein kinases in Bacillus subtilis	3
Symmetric dimethylation on histone H4R3 associates with histone deacetylation to maintain properly polarized cell growth	3
Biofilm formation by selected microbial strains isolated from wastewater and their consortia: mercury resistance and removal potential	3
Bacterial antagonism of Chromobacterium haemolyticum and characterization of its putative type VI secretion system	3
Corynebacterium genitalium sp. nov., nom. rev. and Corynebacterium pseudogenitalium sp. nov., nom. rev., two old species of the genus Corynebacterium described from clinical and environmental samples	3
Acyldepsipeptide activated ClpP1P2 macromolecule of Leptospira, an ideal Achilles’ heel to hamper the cell survival and deregulate ClpP proteolytic activity	3
Comparative characteristics of sequence types, genotypes and virulence of multidrug-resistant Enterococcus faecium isolated from various hosts in eastern Poland. Spread of clonal complex 17 in humans	3
Phylogenomics and molecular marker-based analyses of the order Nevskiales: proposal for the creation of Steroidobacterales ord. nov. and Peristeroidobacter gen. nov	3
Myxobacteria: biology and bioactive secondary metabolites	3
Pal depletion results in hypervesiculation and affects cell morphology and outer-membrane lipid asymmetry in bordetellae	3
Structure and gene cluster of the capsular polysaccharide of multidrug resistant carbapenemase OXA-48-producing Klebsiella pneumoniae strain KPB536 of the genetic line ST147	3
Biochemical limitations of Bacillus thuringiensis based biopesticides production in a wheat bran culture medium	3
Alleviating the virulence of Pseudomonas aeruginosa and Staphylococcus aureus by ascorbic acid nanoemulsion	3
Prediction of nitrofurantoin resistance among Enterobacteriaceae and mutational landscape of in vitro selected resistant Escherichia coli	3
Rates of iron(III) reduction coupled to elemental sulfur or tetrathionate oxidation by acidophilic microorganisms and detection of sulfur intermediates	3
Small RNA-mediated regulation of the tet(M) resistance gene expression in Enterococcus faecium	3
Bioleaching of pyritic coal wastes: bioprospecting and efficiency of selected consortia	2
Regulation of maltocin synthesis in Stenotrophomonas maltophilia by positive and negative regulators	2
Diversity of ethanolamine utilization by human commensal Escherichia coli	2
A phosphopantetheinyl transferase gene restricted to Porphyromonas	2
ABC transporter slr0982 affects response of Synechocystis sp. PCC 6803 to oxidative stress caused by methyl viologen	2
The NF-κB factor Relish is essential for the epithelial defenses protecting against δ-endotoxin dependent effects of Bacillus thuringiensis israelensis infection in the Drosophila model	2
Oxidative damage by 1,10-phenanthroline-5,6-dione and its silver and copper complexes lead to apoptotic-like death in Trichomonas vaginalis	2
Performance of the GenoType MTBDRsl V 2.0 for detecting second-line drugs resistance of Mycobacterium tuberculosis isolates in Tunisia	2
Bivalent copper ions presence triggers removal and homeostatic mechanisms in the metal-resistant microorganism Apiotrichum loubieri M12	2
A transcriptional regulator, IscR, of Burkholderia multivorans acts as both repressor and activator for transcription of iron-sulfur cluster-biosynthetic isc operon	2
Are Bacillus thuringiensis strains like any other Bacillus cereus strains? Phenotypic-based tools to locate Bacillus thuringiensis in the diversity of the Bacillus cereus sensu lato group	2
Modeling gastrointestinal anthrax disease	2
TipB, a novel cell wall hydrolase, is required for efficient conjugative transfer of pXO16 from Bacillus thuringiensis sv. israelensis	2
Development of molecular driven screening for desulfurizing microorganisms targeting the dszB desulfinase gene	2
Polyphosphate accumulation and cell-surface properties by autochthonous bacteria from Argentinian Patagonia	2
The role of Acinetobacter baumannii CarO outer membrane protein in carbapenems influx	2
Quantitative phosphoproteomics reveals the effect of baeSR and acrB genes on protein phosphorylation in Salmonella enterica serovar typhimurium	2
Characterisation of the manganese superoxide dismutase of Enterococcus faecium	2
Quenching and quorum sensing in bacterial bio-films	2
Metabolomics profiling of culture medium reveals association of methionine and vitamin B metabolisms with virulent phenotypes of clinical bloodstream-isolated Candida albicans	2
BarA/UvrY differentially regulates prodigiosin biosynthesis and swarming motility in Serratia marcescens FS14	2
Evaluating the efficacy of endolysins and membrane permeabilizers against Vibrio parahaemolyticus in marine conditions	2
Conditional gene silencing in the Antarctic bacterium Pseudoalteromonas haloplanktis TAC125	2
Transcript profiling reveals the role of PDB1, a subunit of the pyruvate dehydrogenase complex, in Candida albicans biofilm formation	2
Transcriptional regulation of the mannitol phosphotransferase system operon by the ferric uptake regulator (Fur) in Vibrio cholerae El Tor serogroup O1	2
l-tyrosine modulates biofilm formation of Bacillus cereus ATCC 14579	2
Does environmental replication contribute to Bacillus anthracis spore persistence and infectivity in soil?	2
Corrigendum to “Proposal for reunification of the genus Raoultella with the genus Klebsiella and reclassification of Raoultella electrica as Klebsiella electrica comb. nov.” [Res microbiol 172 (2021)	2
The cysS gene (ncgl0127) of Corynebacterium glutamicum is required for sulfur assimilation and affects oxidative stress-responsive cysteine import	2
Thiol-specific oxidant diamide downregulates whiA gene of Corynebacterium glutamicum, thereby suppressing cell division and metabolism	2
Experimental evolution forcing Oenococcus oeni acid tolerance highlights critical role of the citrate locus	2
Archaea: current and potential biotechnological applications	2
Physico-chemical characterization of single bacteria and spores using optical tweezers	2