OOIR: Observatory of International Research

Papers

(The TQCC of Virus Genes is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)

Article	Citations
A systematic review of genotypes and serogroups of African swine fever virus	40
A SARS-CoV-2 mutant from B.1.258 lineage with ∆H69/∆V70 deletion in the Spike protein circulating in Central Europe in the fall 2020	23
An overview of influenza A virus genes, protein functions, and replication cycle highlighting important updates	22
Biological characteristics and genomic analysis of a Stenotrophomonas maltophilia phage vB_SmaS_BUCT548	20
Identification of a phage-derived depolymerase specific for KL64 capsule of Klebsiella pneumoniae and its anti-biofilm effect	17
Exploration of plant transcriptomes reveals five putative novel poleroviruses and an enamovirus	15
Molecular interactions of plant viral satellites	14
Analysis of public domain plant transcriptomes expands the phylogenetic diversity of the family Secoviridae	14
Full genome-based characterization of G4P[6] rotavirus strains from diarrheic patients in Thailand: Evidence for independent porcine-to-human interspecies transmission events	14
SARS coronavirus outbreaks past and present—a comparative analysis of SARS-CoV-2 and its predecessors	13
Phylodynamics of G4P[8] and G2P[4] strains of rotavirus A isolated in Russia in 2017 based on full-genome analyses	12
A potent enzybiotic against methicillin-resistant Staphylococcus aureus	12
Isolation and characterization of new Puumala orthohantavirus strains from Germany	12
Host proviral and antiviral factors for SARS-CoV-2	11
Deciphering transmission dynamics and spillover of avian influenza viruses from avian species to swine populations globally	11
Identification of a reptile lyssavirus in Anolis allogus provided novel insights into lyssavirus evolution	10
Peste des petits ruminants virus non-structural C protein inhibits the induction of interferon-β by potentially interacting with MAVS and RIG-I	10
Whole genome sequencing and phylogenetic classification of Tunisian SARS-CoV-2 strains from patients of the Military Hospital in Tunis	10
Genome characterization of fig umbra-like virus	10
Distinct interferon response in bat and other mammalian cell lines infected with Pteropine orthoreovirus	10
Evidence for zoonotic transmission of species A rotavirus from goat and cattle in nomadic herds in Morocco, 2012–2014	10
Genomic characterization of a novel bovine papillomavirus type 28	10
Occurrence of a substitution or deletion of SARS-CoV-2 spike amino acid 677 in various lineages in Marseille, France	9
First molecular characterization of avian paramyxovirus-1 (Newcastle disease virus) in Botswana	9
Overexpression of m6A-factors METTL3, ALKBH5, and YTHDC1 alters HPV16 mRNA splicing	9

Rapid decline of Zika virus NS1 antigen-specific antibody responses, northeastern Brazil	9
Analysis of viruses present in urine from patients with interstitial cystitis	8
Development and application of reverse genetic technology for the influenza virus	8
Characterization of yam mosaic viruses from Brazil reveals a new phylogenetic group and possible incursion from the African continent	8
Identification and whole-genome characterization of a novel Porcine Circovirus 3 subtype b strain from swine populations in Vietnam	8
Non-structural proteins of bovine viral diarrhea virus	7
Genome characterization of parsley severe stunt-associated virus in Iran	7
Geographically distant isolates of the persistent southern tomato virus (STV) show very low genetic diversity in the putative coat protein gene	7
Alternative antiviral approaches to combat influenza A virus	7
Phylogenetic and diversity analyses revealed that leek yellow stripe virus population consists of three types: S, L, and N	7
Full-length genome characterization of a novel alphapartitivirus detected in the ectomycorrhizal fungus Hygrophorus penarioides	7
Prophylactic strategies to control chikungunya virus infection	6
Comparison of two Turnip mosaic virus P1 proteins in their ability to co-localize with the Arabidopsis thaliana G3BP-2 protein	6
Genetic characterisation of the influenza viruses circulating in Bulgaria during the 2019–2020 winter season	6
Detection of mink astrovirus in Poland and further phylogenetic comparison with other European and Canadian astroviruses	6
A novel ampelovirus associated with mealybug wilt of pineapple (Ananas comosus)	6
Viruses of endophytic and pathogenic forest fungi	6
Diversity of mycoviruses in edible fungi	6
Analysis of HBsAg mutations in the 25 years after the implementation of the hepatitis B vaccination plan in China	6
The characteristics and genome analysis of vB_ApiP_XC38, a novel phage infecting Acinetobacter pittii	6
Principles and practice of virus induced gene silencing for functional genomics in plants	6
Temporal landscape of mutational frequencies in SARS-CoV-2 genomes of Bangladesh: possible implications from the ongoing outbreak in Bangladesh	6
Date palm virus A: first plant virus found in date palm trees	6
The N-terminal cysteine protease domain of rice stripe tenuivirus Pc1 possesses deubiquitinating enzyme activity	6
Attenuated African swine fever virus through serial passaging of viruses in cell culture: a brief review on the knowledge gathered during 60 years of research	6
Duck sewage source coliphage P762 can lyse STEC and APEC	6
Molecular detection of monkeypox and related viruses: challenges and opportunities	5
Genomic diversity and recombination of Seneca Valley viruses emerged in pig herds in Guangdong Province during 2019	5
Characterization of a ToMV isolate overcoming Tm-22 resistance gene in tomato	5
Metagenomic sequencing determines complete infectious bronchitis virus (avian Gammacoronavirus) vaccine strain genomes and associated viromes in chicken clinical samples	5
Muramidase, nuclease, or hypothetical protein genes intervene between paired genes encoding DNA packaging terminase and portal proteins in Wolbachia phages and prophages	5
Full-genome characterization of a novel Felis catus papillomavirus 4 subtype identified in a cutaneous squamous cell carcinoma of a domestic cat	5
Variations in the NSP4 gene of the type 2 porcine reproductive and respiratory syndrome virus isolated in China from 1996 to 2021	5
Isolation and genetic characterization of SARS-CoV-2 from Indian patients in a single family without H/O travel abroad	5
Unusual mono-reassortant of a Wa-like G1P[8] species A rotavirus containing a DS-1-like (genotype 2) NSP4 gene	5
First molecular identification of porcine circovirus-like agents in dogs and cats in China	5
Development of a dual-labeled, hydrolysis probe-based, real-time quantitative PCR assay for detection of both genotypes of duck circovirus-1 (DuCV-1) and DuCV-2	5
A review on structural genomics approach applied for drug discovery against three vector-borne viral diseases: Dengue, Chikungunya and Zika	5
Variability of E2 protein-coding sequences of bovine viral diarrhea virus in Polish cattle	5
The Rep and C1 of Beet curly top Iran virus represent pathogenicity factors and induce hypersensitive response in Nicotiana benthamiana plants	5
A novel one-step amplification refractory mutation system PCR (ARMS-PCR) for differentiation of canine parvovirus-2 variants	5
Molecular characteristics and pathogenicity of an equid alphaherpesvirus 1 strain isolated in China	5
An increase in prevalence of recombinant GII.3[P12] norovirus in sporadic acute diarrhea in children in Nizhny Novgorod, Russia, 2018–2021	4
Extensive ITR expansion of the 2022 Mpox virus genome through gene duplication and gene loss	4
Complete genomic sequences and comparative analysis of two Orf virus isolates from Guizhou Province and Jilin Province, China	4
First detection and complete genome analysis of the Lyon IARC polyomavirus in China from samples of diarrheic cats	4
Subcellular localization of the porcine deltacoronavirus nucleocapsid protein	4
First complete genome sequence of Asia-4 lineage of canine distemper virus in China	4
Phylogenetic and evolutionary analysis of foot-and-mouth disease virus A/ASIA/Sea-97 lineage	4
CHIKV strains Brazil (wt) and Ross (lab-adapted) differ with regard to cell host range and antiviral sensitivity and show CPE in human glioblastoma cell lines U138 and U251	4

Complete genome sequences of infectious spleen and kidney necrosis virus isolated from farmed albino rainbow sharks Epalzeorhynchos frenatum in the United States	4
Identification of recombination in novel goose parvovirus isolated from domesticated Jing-Xi partridge ducks in South China	4
Geographical distribution, genetic studies and vector transmission of alfalfa enamovirus-1 infecting alfalfa crop in Argentina	4
Effect of viral DNA methylation on expression of hepatitis B virus proteins depends on the virus genotype	4
Phylogenetic analysis of porcine reproductive and respiratory syndrome virus in Vietnam, 2021	4
Isolation and characterization of a novel Escherichia coli phage Kayfunavirus ZH4	4
Epstein–Barr virus miR-BART4-3p regulates cell proliferation, apoptosis, and migration by targeting AXL in gastric carcinoma	4
Increased viral read counts and metagenomic full genome characterization of porcine astrovirus 4 and Posavirus 1 in sows in a swine farm with unexplained neonatal piglet diarrhea	4
Construction of SARS-CoV-2 spike-pseudotyped retroviral vector inducing syncytia formation	4
Genetic and antigenic characterization of influenza A/H5N1 viruses isolated from patients in Indonesia, 2008–2015	4
Profiling of alternative polyadenylation and gene expression in PEDV-infected IPEC-J2 cells	4
Isolation and characterization of the novel bacteriophage vB_SmaS_BUCT626 against Stenotrophomonas maltophilia	4
Isolation and characterization of a novel lytic bacteriophage vB_Efm_LG62 infecting Enterococcus faecium	4
Identification and validation of ferroptosis-related genes in patients infected with dengue virus: implication in the pathogenesis of DENV	4
Dissection of two drug-targeted regions of Hepatitis C virus subtype 4a infecting Egyptian patients	4
A highly virulent canine distemper virus strain isolated from vaccinated mink in China	4
Genetic and antigenic characterization of H5 and H7 avian influenza viruses isolated from migratory waterfowl in Mongolia from 2017 to 2019	4
Structure and function of the parvoviral NS1 protein: a review	4
Three new mycoviruses identified in the apple replant disease (ARD)-associated fungus Rugonectria rugulosa	4
Natural intertypic and intratypic recombinants of enterovirus 71 from mainland China during 2009–2018: a complete genome analysis	4