Virus Genes

Article	Citations
A systematic review of genotypes and serogroups of African swine fever virus	52
An overview of influenza A virus genes, protein functions, and replication cycle highlighting important updates	34
A SARS-CoV-2 mutant from B.1.258 lineage with ∆H69/∆V70 deletion in the Spike protein circulating in Central Europe in the fall 2020	25
Biological characteristics and genomic analysis of a Stenotrophomonas maltophilia phage vB_SmaS_BUCT548	24
Exploration of plant transcriptomes reveals five putative novel poleroviruses and an enamovirus	19
Non-structural proteins of bovine viral diarrhea virus	19
Identification of a phage-derived depolymerase specific for KL64 capsule of Klebsiella pneumoniae and its anti-biofilm effect	18
Full genome-based characterization of G4P[6] rotavirus strains from diarrheic patients in Thailand: Evidence for independent porcine-to-human interspecies transmission events	18
Molecular interactions of plant viral satellites	17
Analysis of public domain plant transcriptomes expands the phylogenetic diversity of the family Secoviridae	17
SARS coronavirus outbreaks past and present—a comparative analysis of SARS-CoV-2 and its predecessors	14
Genome characterization of fig umbra-like virus	13
Deciphering transmission dynamics and spillover of avian influenza viruses from avian species to swine populations globally	12
Development and application of reverse genetic technology for the influenza virus	11
Host proviral and antiviral factors for SARS-CoV-2	11
Peste des petits ruminants virus non-structural C protein inhibits the induction of interferon-β by potentially interacting with MAVS and RIG-I	11
Overexpression of m6A-factors METTL3, ALKBH5, and YTHDC1 alters HPV16 mRNA splicing	10
Diversity of mycoviruses in edible fungi	10
Distinct interferon response in bat and other mammalian cell lines infected with Pteropine orthoreovirus	10
Identification of a reptile lyssavirus in Anolis allogus provided novel insights into lyssavirus evolution	10
Characterization of yam mosaic viruses from Brazil reveals a new phylogenetic group and possible incursion from the African continent	9
Genetic characterisation of the influenza viruses circulating in Bulgaria during the 2019–2020 winter season	9
Occurrence of a substitution or deletion of SARS-CoV-2 spike amino acid 677 in various lineages in Marseille, France	9
A novel ampelovirus associated with mealybug wilt of pineapple (Ananas comosus)	9
Molecular characteristics and pathogenicity of an equid alphaherpesvirus 1 strain isolated in China	8

Principles and practice of virus induced gene silencing for functional genomics in plants	8
Full-length genome characterization of a novel alphapartitivirus detected in the ectomycorrhizal fungus Hygrophorus penarioides	8
Identification and whole-genome characterization of a novel Porcine Circovirus 3 subtype b strain from swine populations in Vietnam	8
CHIKV strains Brazil (wt) and Ross (lab-adapted) differ with regard to cell host range and antiviral sensitivity and show CPE in human glioblastoma cell lines U138 and U251	8
Alternative antiviral approaches to combat influenza A virus	8
Detection of mink astrovirus in Poland and further phylogenetic comparison with other European and Canadian astroviruses	8
Genome characterization of parsley severe stunt-associated virus in Iran	7
Duck sewage source coliphage P762 can lyse STEC and APEC	7
Temporal landscape of mutational frequencies in SARS-CoV-2 genomes of Bangladesh: possible implications from the ongoing outbreak in Bangladesh	7
Phylogenetic and diversity analyses revealed that leek yellow stripe virus population consists of three types: S, L, and N	7
Variations in the NSP4 gene of the type 2 porcine reproductive and respiratory syndrome virus isolated in China from 1996 to 2021	7
Prophylactic strategies to control chikungunya virus infection	7
Metagenomic sequencing determines complete infectious bronchitis virus (avian Gammacoronavirus) vaccine strain genomes and associated viromes in chicken clinical samples	7
Attenuated African swine fever virus through serial passaging of viruses in cell culture: a brief review on the knowledge gathered during 60 years of research	7
Characterization of a ToMV isolate overcoming Tm-22 resistance gene in tomato	7
Comparison of two Turnip mosaic virus P1 proteins in their ability to co-localize with the Arabidopsis thaliana G3BP-2 protein	6
A novel one-step amplification refractory mutation system PCR (ARMS-PCR) for differentiation of canine parvovirus-2 variants	6
Development of a dual-labeled, hydrolysis probe-based, real-time quantitative PCR assay for detection of both genotypes of duck circovirus-1 (DuCV-1) and DuCV-2	6
Activating transcription factor 3 mediates apoptotic functions through a p53-independent pathway in human papillomavirus 18 infected HeLa cells	6
Profiling of alternative polyadenylation and gene expression in PEDV-infected IPEC-J2 cells	6
Is COVID-19 severity associated with telomere length? A systematic review and meta-analysis	6
Full-genome characterization of a novel Felis catus papillomavirus 4 subtype identified in a cutaneous squamous cell carcinoma of a domestic cat	6
The N-terminal cysteine protease domain of rice stripe tenuivirus Pc1 possesses deubiquitinating enzyme activity	6
Muramidase, nuclease, or hypothetical protein genes intervene between paired genes encoding DNA packaging terminase and portal proteins in Wolbachia phages and prophages	6
Molecular epidemiology of respiratory syncytial virus among children and adults in India 2016 to 2018	6
Molecular detection of monkeypox and related viruses: challenges and opportunities	6
Complete genome sequences of infectious spleen and kidney necrosis virus isolated from farmed albino rainbow sharks Epalzeorhynchos frenatum in the United States	5
Identification and validation of ferroptosis-related genes in patients infected with dengue virus: implication in the pathogenesis of DENV	5
Complete genomic sequences and comparative analysis of two Orf virus isolates from Guizhou Province and Jilin Province, China	5
Structure and function of the parvoviral NS1 protein: a review	5
Isolation and genetic characterization of SARS-CoV-2 from Indian patients in a single family without H/O travel abroad	5
Isolation and characterization of the novel bacteriophage vB_SmaS_BUCT626 against Stenotrophomonas maltophilia	5
Extensive ITR expansion of the 2022 Mpox virus genome through gene duplication and gene loss	5
Isolation and characterization of a novel lytic bacteriophage vB_Efm_LG62 infecting Enterococcus faecium	5
A genetically novel avian Hepatitis E virus in China	5
The Rep and C1 of Beet curly top Iran virus represent pathogenicity factors and induce hypersensitive response in Nicotiana benthamiana plants	5
Enzootic nasal tumor virus type 2 envelope of goats acts as a retroviral oncogene in cell transformation	5
First complete genome sequence of Asia-4 lineage of canine distemper virus in China	5
Construction of SARS-CoV-2 spike-pseudotyped retroviral vector inducing syncytia formation	4
Diversity of viroids infecting grapevines in the South African Vitis germplasm collection	4
Genetic characterization of dengue virus from patients presenting multi-serotypic infections in the Northern West Bengal, India	4
Epstein–Barr virus miR-BART4-3p regulates cell proliferation, apoptosis, and migration by targeting AXL in gastric carcinoma	4
The effect of single amino acid substitution at position 220 in the hemagglutinin glycoprotein on avian influenza H7N9 candidate vaccine virus	4
Natural intertypic and intratypic recombinants of enterovirus 71 from mainland China during 2009–2018: a complete genome analysis	4
Identification and complete genome sequencing of a novel betapartitivirus naturally infecting the mycorrhizal desert truffle Terfezia claveryi	4
First detection and complete genome analysis of the Lyon IARC polyomavirus in China from samples of diarrheic cats	4
Hantavirus Brno loanvirus is highly specific to the common noctule bat (Nyctalus noctula) and widespread in Central Europe	4
Three new mycoviruses identified in the apple replant disease (ARD)-associated fungus Rugonectria rugulosa	4
Whole genome sequence analysis of bacteriophage P1 that infects the Lactobacillus plantarum	4
The lytic phase of Epstein–Barr virus plays an important role in tumorigenesis	4

Phylogenetic and evolutionary analysis of foot-and-mouth disease virus A/ASIA/Sea-97 lineage	4
Tomato yellow vein streak virus and Tomato golden vein virus: a reappraisal of the classification status of two South American Begomovirus species based upon genome–wide pairwise identity of multiple	4
An increase in prevalence of recombinant GII.3[P12] norovirus in sporadic acute diarrhea in children in Nizhny Novgorod, Russia, 2018–2021	4
Detection and typing of dengue virus by one-step RT-PCR-based high-resolution melting assay	4
Isolation and characterization of a novel Escherichia coli phage Kayfunavirus ZH4	4
Whole genome sequencing and annotation of a lysogenic phage vB_EcoP_DE5 isolated from donkey-derived Escherichia coli	4
Investigation of canine chaphamaparvovirus, canine bufavirus, and canine adenovirus in dogs with diarrhea: First report of novel canine bufavirus in Turkey	4
The interplay of plant hormonal pathways and geminiviral proteins: partners in disease development	4
Phylogenetic analysis of porcine reproductive and respiratory syndrome virus in Vietnam, 2021	4
Isolation, characterization, and genomic analysis of vB_PaeS_TUMS_P81, a lytic bacteriophage against Pseudomonas aeruginosa	4
Importation of a novel Indian Ocean lineage carrying E1-K211E and E2-V264A of Chikungunya Virus in Zhejiang Province, China, in 2019	4
Impact of genetic polymorphisms related to innate immune response on respiratory syncytial virus infection in children	4
Shrimp classification for white spot syndrome detection through enhanced gated recurrent unit-based wild geese migration optimization algorithm	4
Comparative trachea transcriptome analysis in SPF broiler chickens infected with avian infectious bronchitis and avian influenza viruses	4
A highly virulent canine distemper virus strain isolated from vaccinated mink in China	4
The complete genome sequence of an alphabaculovirus from the brown tussock moth, Olene mendosa Hübner, expands our knowledge of lymantriine baculovirus diversity and evolution	3
Diversity of tomato-infecting begomoviruses and spatiotemporal dynamics of an endemic viral species of the Brazilian Atlantic rain forest biome	3
Identification of monoclonal antibody targeting epitope on p72 trimeric spike of African swine fever virus	3
Drug-resistant and immune-escape hepatitis B virus mutants, occult hepatitis B infection and coinfections in public hospital patients from Argentina	3
Molecular characterization of poleroviruses isolated from oilseed rape in Greece	3
H3K4me3 histone modification in baculovirus-infected silkworm cells	3
First detection of the occurrence and study of the genetic diversity of novel putative kirkoviruses in donkey in China	3
Co-infection of a novel fusagravirus and a partitivirus in a Korean isolate of Rosellinia necatrix KACC40168	3
Whole genome sequencing and evolution analyses of Human metapneumovirus	3
The Citrus yellow mosaic badnavirus ORFI functions as a RNA-silencing suppressor	3
The discovery of novel papillomaviruses in cats in Southwest China	3
Effects of β-HPV on DNA damage response pathways to drive carcinogenesis: a review	3
Identification and genomic characterization of emerging CRESS DNA viruses in thoroughbred horses in China	3
The emergence of novel Iranian variants in sheeppox and goatpox viral envelope proteins with remarkably altered putative binding affinities with the host receptor	3
SOX9 negatively regulates the RLR antiviral signaling by targeting MAVS	3
Development and application of a multiplex qPCR assay for the detection of duck circovirus, duck Tembusu virus, Muscovy duck reovirus, and new duck reovirus	3
One-step SYBR green-based real-time RT-PCR assay for detection of foot-and-mouth disease virus circulating in India	3
Giant virus-related sequences in the 5300-year-old Ötzi mummy metagenome	3
Phylogenetics of tobacco rattle virus isolates from potato (Solanum tuberosum L.) in the USA: a multi-gene approach to evolutionary lineage	3
Hyperactivation of p53 using CRISPRa kills human papillomavirus-driven cervical cancer cells	3
Mass spectrometry-based proteomic analysis of potential infectious bursal disease virus VP3-interacting proteins in chicken embryo fibroblasts cells	3
Interaction of influenza A virus NS1 and cytoskeleton scaffolding protein α-actinin 4	3
A review on structural genomics approach applied for drug discovery against three vector-borne viral diseases: Dengue, Chikungunya and Zika	3
Whole-genome characterization of avian picornaviruses from diarrheic broiler chickens co-infected with multiple picornaviruses in Iran	3
Eukaryotic initiating factor eIF4E is targeted by EBV-encoded miR-BART11-3p and regulates cell cycle and apoptosis in EBV-associated gastric carcinoma	3
Detection and characterization of H5N1 HPAIV in environmental samples from a dairy farm	3
Sensitivity of two SARS-CoV-2 variants with spike protein mutations to neutralising antibodies	3
Characterization of the first Rubus yellow net virus genome from blackberry	3
Mutations in the S gene of hepatitis B virus in three generations of patients with chronic hepatitis B	3
A virus from Aspergillus cibarius with features of alpha- and betachrysoviruses	2
Nuclear respiratory factor 1 promotes the progression of EBV-associated gastric cancer and maintains EBV latent infection	2
The host cellular protein Ndufaf4 interacts with the vesicular stomatitis virus M protein and affects viral propagation	2
Epstein–Barr virus infection controls the concentration of the intracellular antioxidant glutathione by upregulation of the glutamate transporter EAAT3 in tumor cells	2
Complete genome sequence of malva-associated soymovirus 1: a novel virus infecting common mallow	2
Characteristics and whole-genome analysis of a novel Pseudomonas syringae pv. tomato bacteriophage D6 isolated from a karst cave	2
RNA sequencing of avian paramyxovirus (Paramyxoviridae, Avulavirinae) isolates from wild mallards in Belgium, 2021: complete genomes and coinfections	2
Construction and characterisation of glycoprotein E and glycoprotein I deficient mutants of Australian strains of infectious laryngotracheitis virus using traditional and CRISPR/Cas9-assisted homologo	2
Reintroduction of highly pathogenic avian influenza A H7N9 virus in southwestern China	2
Label-free proteomics analysis on the envelope of budded viruses of Bombyx mori nucleopolyhedrovirus harboring differential localized GP64	2
The arrival of highly pathogenic avian influenza viruses H5N8 in Iran through two windows, 2016	2
Co-circulation of two Mumps virus genotypes in Assam, India	2
A novel subgenotype I3 of hepatitis B virus in Guangxi, China: a 15-year follow-up study	2
RHDV 3C protein antagonizes type I interferon signaling by cleaving interferon promoter stimulated 1 protein	2
Molecular phylodynamics of fowl adenovirus serotype 11 and 8b from inclusion body hepatitis outbreaks	2
Quantitative analysis of Epstein–Barr virus DNA in plasma and stomach biopsies of patients with gastric cancer	2
In vitro inhibitory effect of maraviroc on the association of the simian immunodeficiency virus envelope glycoprotein with CCR5	2
Genotypes of rhinovirus detected among children in two communities of South-West Nigeria	2
Genetic and phylogenetic characterization of polycistronic dsRNA segment-10 of bluetongue virus isolates from India between 1985 and 2011	2
The virome of the white-winged vampire bat Diaemus youngi is rich in circular DNA viruses	2
Genotypic characterization of Japanese encephalitis virus circulating in swine population of India: Genotype-III still in dominance	2
Characterization and phylogenetic analysis of bovine gammaherpesvirus 4 isolated in China, 2022	2
Complete genome sequencing and characterization of single-stranded DNA Vibrio parahaemolyticus phage from inland saline aquaculture environment	2
Removal of 3C protease from the 3ABC improves expression, solubility, and purification of the recombinant 3AB of foot-and-mouth disease virus	2
Transcriptome sequencing of LMP2A-transfected gastric cancer cells identifies potential biomarkers in EBV-associated gastric cancer	2
Novel genomic targets for proper subtyping of bovine viral diarrhea virus 1 (BVDV-1) and BVDV-2	2
First complete genome sequence of lumpy skin disease virus directly from a clinical sample in South India	2
A dominant internal gene cassette of high pathogenicity avian influenza H7N9 virus raised since 2018	2
Zika virus infection induces expression of NRF2 and antioxidant systems in trophoblast cells	2
Complete genome sequences of novel Berlinvirus and novel Certrevirus lytic for Pectobacterium sp. causing soft rot and black leg disease of potato	2
Characterization and genome analysis of a novel phage Kayfunavirus TM1	2
Antibacterial effects of single phage and phage cocktail against multidrug-resistant Klebsiella pneumoniae isolated from diabetic foot ulcer	2
Identification and characterization of Phaseolus vulgaris endornavirus 1, 2 and 3 in common bean cultivars of East Africa	1
SCD1 inhibits HBV replication by regulating autophagy under high lipid conditions	1
Full-length genome characterization of a novel mitovirus isolated from the root rot fungus Armillaria mellea	1
Genome sequence analysis of H7N3 subtype avian influenza virus originated from wild birds and its potential infectivity in mice	1

Kama virus (KAMV) is an atypical representative of the seabird tick-borne flaviviruses	1
First complete genome sequence of an isolate of cowpea severe mosaic virus from South America	1
Do HBsAg subdeterminants matter for vaccination against hepatitis B?	1
Characterization of the functional domains of nuclear shuttle protein (NSP) of Indian cassava mosaic virus using green fluorescent protein as reporter	1
Complete genome organization and characterization of Hippeastrum latent virus	1
Genetic characteristics of a novel HIV-1 recombinant lineage (CRF103_01B) and its prevalence in northern China	1
Two novel phages, Klebsiella phage GADU21 and Escherichia phage GADU22, from the urine samples of patients with urinary tract infection	1
Determination of molecular epidemiologic pattern of human T-lymphotropic virus type 1 (HTLV-1) in Alborz province, Iran	1
Complete genome sequence analysis, morphology and structural protein identification of two Bacillus subtilis phages, BSTP4 and BSTP6, which may form a new species in the genus Salasvirus	1
Association of TREX1 polymorphism with disease progression in human immunodeficiency virus type-1 (HIV-1) infected patients	1
Molecular analysis of the env, LTR, and pX regions of bovine leukemia virus in dairy cattle of Türkiye	1
Molecular characterization of picobirnaviruses in small ruminants with diarrhea in Turkey	1
Reverse transcription recombinase-aided amplification assay for avian influenza virus	1
Characterization and complete genome analysis of Klebsiella phage Kp109 with lytic activity against Klebsiella pneumoniae	1
Identification and characterization of the genome of a papillomavirus from skin lesions of four-toed hedgehogs (Atelerix albiventris)	1
Characterization of a reassortant H11N9 subtype avian influenza virus isolated from spot-billed duck in China	1
PK15 cell line stably overexpressing IL2 enhances PCV2 replication	1
Foreign gene expression attenuates a virulent Newcastle disease virus in chickens	1
Intra-host mutation rate of acute SARS-CoV-2 infection during the initial pandemic wave	1
Transcriptional activation of Mink enteritis virus VP2 by the C-terminal of its NS1 protein	1
Complete genome and molecular characterization of a putative novel citrivirus from Rudbeckia sp.	1
Increased virulence of a novel reassortant H1N3 avian influenza virus in mice as a result of adaptive amino acid substitutions	1
MiR-339-5p inhibits replication of porcine reproductive and respiratory syndrome virus by targeting viral gene regions	1
Basic research on herpes simplex viruses: are mutants still needed?	1
MicroRNAs miR-18a and miR-452 regulate the replication of enterovirus 71 by targeting the gene encoding VP3	1
Molecular characterization of Brazilian FeLV strains in São Luis, Maranhão Brazil	1
Virulence evaluation of Israeli Marek’s disease virus isolates from commercial poultry using their meq gene sequence	1
Expression and localization of Bombyx mori nucleopolyhedrovirus GP37	1
Design and validation of a laboratory-developed diagnostic assay for monkeypox virus	1
Identification and genomic characterization of a novel HIV-1 unique recombinant form (CRF01_AE/CRF07_BC) in Zhejiang Province, China	1
Nucleotide at position 66 of NS2A in Japanese encephalitis virus is associated with the virulence and proliferation of virus	1
Guinea pig herpes like virus is a gamma herpesvirus	1