Virus Genes

Article	Citations
Molecular characterization and genetic analysis of highly pathogenic H5N1 clade 2.3.4.4b in seagulls from Dukan Lake, Iraq	57
The H5N1-NS1 protein affects the host cell cycle and apoptosis through interaction with the host lncRNA PIK3CD-AS2	43
Design and validation of a laboratory-developed diagnostic assay for monkeypox virus	25
Structure and function of the parvoviral NS1 protein: a review	24
First complete genome sequence of lumpy skin disease virus directly from a clinical sample in South India	23
Whole-genome characterization of avian picornaviruses from diarrheic broiler chickens co-infected with multiple picornaviruses in Iran	20
Immune response induced by recombinant pres2/S-protein and a pres2-S-protein fused with a core 18-27 antigen fragment of hepatitis B virus compared to conventional HBV vaccine	19
Diversity of viroids infecting grapevines in the South African Vitis germplasm collection	17
Genomic characterization of three bacteriophages infecting donkey-derived Escherichia coli	15
Study of Hsp90α and Hsp90β role in virus replication using cell lines with Hsp90 gene knockouts	14
Expression and localization of Bombyx mori nucleopolyhedrovirus GP37	13
Phylogenetic analyses of the spread of Clade I MPOX in African and non-African nations	13
Do HBsAg subdeterminants matter for vaccination against hepatitis B?	12
Molecular detection of monkeypox and related viruses: challenges and opportunities	12
Characterization of a reassortant H11N9 subtype avian influenza virus isolated from spot-billed duck in China	12
Attenuated African swine fever virus through serial passaging of viruses in cell culture: a brief review on the knowledge gathered during 60 years of research	11
The potential emerging role of piRNA/PIWI complex in virus infection	10
Characterization of the functional domains of nuclear shuttle protein (NSP) of Indian cassava mosaic virus using green fluorescent protein as reporter	9
Approaches to identify canine distemper virus with neurological symptoms on the basis of molecular characterization of hemagglutinin and fusion genes	9
Small RNA sequencing analysis reveals regulation of microRNA expression in Madin–Darby canine kidney epithelial cells infected with Canid alphaherpesvirus 1	9
The emergence of novel Iranian variants in sheeppox and goatpox viral envelope proteins with remarkably altered putative binding affinities with the host receptor	9
Variations in the NSP4 gene of the type 2 porcine reproductive and respiratory syndrome virus isolated in China from 1996 to 2021	9
Characterization of Phietavirus Henu 2 in the virome of individuals with acute gastroenteritis	8
Tackling hepatitis B Virus with CRISPR/Cas9: advances, challenges, and delivery strategies	8
CHIKV strains Brazil (wt) and Ross (lab-adapted) differ with regard to cell host range and antiviral sensitivity and show CPE in human glioblastoma cell lines U138 and U251	8

Leucoma salicis nucleopolyhedrovirus (LesaNPV) genome sequence shed new light on the origin of the Alphabaculovirus orpseudotsugatae species	8
Characteristics and whole-genome analysis of a novel Pseudomonas syringae pv. tomato bacteriophage D6 isolated from a karst cave	8
Exploring the role of YBX3 in PEDV infection through the utilization of YBX3 knockout and overexpression cell lines	8
Detection of mink astrovirus in Poland and further phylogenetic comparison with other European and Canadian astroviruses	8
Correction: First reports of several viruses and a viroid including a novel vitivirus in Japan, found through virome analysis of bulk grape genetic resources	8
Genetic variability and mutation of Epstein‒Barr virus (EBV)-encoded LMP-1 and BHRF-1 genes in EBV-infected patients: identification of precise targets for development of personalized EBV vaccines	8
AMP-activated kinase regulates porcine reproductive and respiratory syndrome virus infection in vitro	8
Investigation of canine chaphamaparvovirus, canine bufavirus, and canine adenovirus in dogs with diarrhea: First report of novel canine bufavirus in Turkey	7
Stearoyl-CoA desaturase 1 is targeted by EBV-encoded miR-BART20-5p and regulates cell autophagy, proliferation, and migration in EBV-associated gastric cancer	7
Complete genome sequence of malva-associated soymovirus 1: a novel virus infecting common mallow	7
Quantitative analysis of Epstein–Barr virus DNA in plasma and stomach biopsies of patients with gastric cancer	7
The genetic and biological characterization of the first avian paramyxovirus serotype 14 isolated from chicken in China	7
Whole genome sequencing and genomic characterization of a DS-1-like G2P[4] group A rotavirus in Japan	7
Full genome-based characterization of G4P[6] rotavirus strains from diarrheic patients in Thailand: Evidence for independent porcine-to-human interspecies transmission events	7
Three new mycoviruses identified in the apple replant disease (ARD)-associated fungus Rugonectria rugulosa	6
Principles and practice of virus induced gene silencing for functional genomics in plants	6
First reports of several viruses and a viroid including a novel vitivirus in Japan, found through virome analysis of bulk grape genetic resources	6
Duck sewage source coliphage P762 can lyse STEC and APEC	6
A novel ampelovirus associated with mealybug wilt of pineapple (Ananas comosus)	6
Subregional origins of emerging SARS-CoV-2 variants during the second pandemic wave in Côte d’Ivoire	6
Construction of SARS-CoV-2 spike-pseudotyped retroviral vector inducing syncytia formation	6
Identification and complete genome sequencing of a divergent olive virus T isolate and an olive leaf yellowing-associated virus isolate naturally infecting olive trees in Greece	6
Complete genome organization and characterization of Hippeastrum latent virus	6
Virulence evaluation of Israeli Marek’s disease virus isolates from commercial poultry using their meq gene sequence	5
Reverse transcription recombinase-aided amplification assay for avian influenza virus	5
Identification and characterization of the genome of a papillomavirus from skin lesions of four-toed hedgehogs (Atelerix albiventris)	5
Molecular phylodynamics of fowl adenovirus serotype 11 and 8b from inclusion body hepatitis outbreaks	5
MiR-339-5p inhibits replication of porcine reproductive and respiratory syndrome virus by targeting viral gene regions	5
The complete genomic sequence of Magnaporthe oryzae polymycovirus 1	5
Genetic characterization of dengue virus 4 complete genomes from East Java, Indonesia	5
Genome sequence of a Sobemovirus from the feces of Northern Pintail (Anas acuta)	5
Whole genome sequencing and annotation of a lysogenic phage vB_EcoP_DE5 isolated from donkey-derived Escherichia coli	5
ALR inhibits HBV replication and autophagosome formation by ameliorating HBV-induced ROS production in hepatic cells	5
The global asymptotical stability of pseudorabies model with age-structure	5
First report of the whole‑genome sequence analysis of Fig badnavirus 2 from China	5
Correction to: Molecular identification of Betacoronavirus in bats from Sardinia (Italy): first detection and phylogeny	5
Characterization of two novel reassortant bluetongue virus serotype 1 strains isolated from farmed white-tailed deer (Odocoileus virginianus) in Florida, USA	5
Long non-coding RNA C1RL-AS1 aggravates influenza A virus pneumonia through miR-16-5p/LAMP3	5
SCD1 inhibits HBV replication by regulating autophagy under high lipid conditions	5
Development of a dual-labeled, hydrolysis probe-based, real-time quantitative PCR assay for detection of both genotypes of duck circovirus-1 (DuCV-1) and DuCV-2	4
First complete genome sequence of Asia-4 lineage of canine distemper virus in China	4
Porcine epidemic diarrhea virus E protein induces unfolded protein response through activating both PERK and ATF6 rather than IRE1 signaling pathway	4
Domestic cat hepadnavirus genotype B is present in Southern Brazil	4
Genomic and epidemiological surveillance of SARS-CoV-2 variants during the pre-mass vaccination period in Botucatu, Brazil	4
Identification and whole-genome characterization of a novel Porcine Circovirus 3 subtype b strain from swine populations in Vietnam	4
Molecular characteristics and pathogenicity of an equid alphaherpesvirus 1 strain isolated in China	4
A highly virulent canine distemper virus strain isolated from vaccinated mink in China	4
Interaction of influenza A virus NS1 and cytoskeleton scaffolding protein α-actinin 4	4
Robust antiviral innate immune response and miRNA regulatory network were identified in ZIKV-infected cells: implications in the pathogenesis of ZIKV infection	4
Bioinformatic identification of monkeypox virus phylogenetic gene trees that are representative of its whole-genome phylogenetic tree	4

Molecular analysis of the env, LTR, and pX regions of bovine leukemia virus in dairy cattle of Türkiye	4
SARS coronavirus outbreaks past and present—a comparative analysis of SARS-CoV-2 and its predecessors	4
Isolation and characterization of a novel Escherichia coli phage Kayfunavirus ZH4	4
Genome sequence analysis of H7N3 subtype avian influenza virus originated from wild birds and its potential infectivity in mice	4
Aborted infection of human sodium taurocholate cotransporting polypeptide (hNTCP) expressing woodchuck hepatocytes with hepatitis B virus (HBV)	4
A review on structural genomics approach applied for drug discovery against three vector-borne viral diseases: Dengue, Chikungunya and Zika	4
Novel genomic targets for proper subtyping of bovine viral diarrhea virus 1 (BVDV-1) and BVDV-2	4
Correction: Whole genome sequencing and annotation of a lysogenic phage vB_EcoP_DE5 isolated from donkey-derived Escherichia coli	3
Detection of four isomers of the human cytomegalovirus genome using nanopore long-read sequencing	3
The discovery of novel papillomaviruses in cats in Southwest China	3
Ovine adenoviruses infecting sheep and goats in Türkiye: detection and molecular characterization of three different types	3
Drug-resistant and immune-escape hepatitis B virus mutants, occult hepatitis B infection and coinfections in public hospital patients from Argentina	3
Identification of monoclonal antibody targeting epitope on p72 trimeric spike of African swine fever virus	3
Jojan: a novel virus that lyses Stenotrophomonas maltophilia from dog	3
Pooled screening for endogenous HHV-6 in subjects with coronary artery disease	3
Potentials as biomarker and therapeutic target of upregulated long non-coding RNA HLA-F antisense RNA 1 in hepatitis B virus-associated hepatocellular carcinoma	3
Molecular characterization of a novel variant of infectious bronchitis virus from field outbreaks in backyard chicken population of North East India	3
Is COVID-19 severity associated with telomere length? A systematic review and meta-analysis	3
Hantavirus Brno loanvirus is highly specific to the common noctule bat (Nyctalus noctula) and widespread in Central Europe	3
Full-genome characterization of a novel Felis catus papillomavirus 4 subtype identified in a cutaneous squamous cell carcinoma of a domestic cat	3
Construction and efficacy of a recombinant QX-like infectious bronchitis virus vaccine strain	3
Nucleotide at position 66 of NS2A in Japanese encephalitis virus is associated with the virulence and proliferation of virus	3
Isolation and characterization of a novel lytic bacteriophage vB_Efm_LG62 infecting Enterococcus faecium	3
A novel bluetongue virus serotype 2 strain isolated from a farmed Florida white-tailed deer (Odocoileus virginianus) arose from reassortment of gene segments derived from co-circulating serotypes in t	3
Biological characteristics and genomic analysis of a novel Escherichia phage Kayfunavirus CY1	3
Donkey-like kirkovirus is associated with diarrhea in piglets	3
Characterization of two novel fusariviruses co-infecting a single isolate of phytopathogenic fungus Botrytis cinerea	3
MicroRNAs miR-18a and miR-452 regulate the replication of enterovirus 71 by targeting the gene encoding VP3	3
Identification and genomic characterization of emerging CRESS DNA viruses in thoroughbred horses in China	3
Complete genome and molecular characterization of a putative novel citrivirus from Rudbeckia sp.	3
Complete genome sequence analysis and biological characteristics of Newcastle disease viruses from different hosts in China	3
Epstein–Barr virus infection controls the concentration of the intracellular antioxidant glutathione by upregulation of the glutamate transporter EAAT3 in tumor cells	2
RHDV 3C protein antagonizes type I interferon signaling by cleaving interferon promoter stimulated 1 protein	2
A virus from Aspergillus cibarius with features of alpha- and betachrysoviruses	2
A SARS-CoV-2 mutant from B.1.258 lineage with ∆H69/∆V70 deletion in the Spike protein circulating in Central Europe in the fall 2020	2
Intra-host mutation rate of acute SARS-CoV-2 infection during the initial pandemic wave	2
Genetic characterisation of the influenza viruses circulating in Bulgaria during the 2019–2020 winter season	2
First detection and complete genome analysis of the Lyon IARC polyomavirus in China from samples of diarrheic cats	2
Trichodysplasia spinulosa polyomavirus small T antigen synergistically modulates S6 protein translation and DNA damage response pathways to shape host cell environment	2
The complete genome of equid herpesvirus-1 (EHV-1) field isolates from Argentina reveals an interspecific recombinant strain	2
Immunization of recombinant NS3 protein (protease region) of dengue virus induces high levels of CTLA-4 and apoptosis in splenocytes of BALB/c mice	2
Detection and typing of dengue virus by one-step RT-PCR-based high-resolution melting assay	2
Transcriptome sequencing of LMP2A-transfected gastric cancer cells identifies potential biomarkers in EBV-associated gastric cancer	2
Two novel phages, Klebsiella phage GADU21 and Escherichia phage GADU22, from the urine samples of patients with urinary tract infection	2
Screening of candidate genes associated with high titer production of oncolytic measles virus based on systems biology approach	2
Identification and characterization of mycoviruses in transcriptomes from the fungal family ceratocystidaceae	2
P4 protein of an Indian isolate of rice tungro bacilliform virus modulates gene silencing	2
A novel subgenotype I3 of hepatitis B virus in Guangxi, China: a 15-year follow-up study	2
Alternative antiviral approaches to combat influenza A virus	2
The complete genome sequence of an alphabaculovirus from the brown tussock moth, Olene mendosa Hübner, expands our knowledge of lymantriine baculovirus diversity and evolution	2
Comparative genomics and evolutionary analysis of dengue virus strains circulating in Pakistan	2
Hyperactivation of p53 using CRISPRa kills human papillomavirus-driven cervical cancer cells	2
Isolation of the novel phage SAP71 and its potential use against Staphylococcus aureus in an atopic dermatitis mouse model	2
Extensive ITR expansion of the 2022 Mpox virus genome through gene duplication and gene loss	2
Genome characterization of parsley severe stunt-associated virus in Iran	2
Co-circulation of two Mumps virus genotypes in Assam, India	2
Guinea pig herpes like virus is a gamma herpesvirus	2
DsRNA sequencing revealed a previously missed terminal sequence of a +ssRNA virus that infects dinoflagellate Heterocapsa circularisquama	2
Muramidase, nuclease, or hypothetical protein genes intervene between paired genes encoding DNA packaging terminase and portal proteins in Wolbachia phages and prophages	2
Complete genome sequence analysis, morphology and structural protein identification of two Bacillus subtilis phages, BSTP4 and BSTP6, which may form a new species in the genus Salasvirus	2
Molecular epidemiology of respiratory syncytial virus among children and adults in India 2016 to 2018	2
A new isolate of mungbean yellow mosaic India virus in Vigna mungo L. reported from a Dayalbagh field, Agra	2
Identification and validation of ferroptosis-related genes in patients infected with dengue virus: implication in the pathogenesis of DENV	2
Analysis of SARS-CoV-2 omicron mutations that emerged during long-term replication in a lung cancer xenograft mouse model	1
Diversity of mycoviruses in edible fungi	1
Preparation of monoclonal antibodies against Epstein-Barr virus glycoprotein 350	1
The Rep and C1 of Beet curly top Iran virus represent pathogenicity factors and induce hypersensitive response in Nicotiana benthamiana plants	1
Lumpy skin disease: a systematic review of mode of transmission, risk of emergence, and risk entry pathways	1
Complete genome sequencing and characterization of single-stranded DNA Vibrio parahaemolyticus phage from inland saline aquaculture environment	1
The arrival of highly pathogenic avian influenza viruses H5N8 in Iran through two windows, 2016	1
Amsacta moorei entomopoxvirus encodes a protein kinase with dual activity and a broad substrate spectrum including two putative cellular substrates	1
A novel one-step amplification refractory mutation system PCR (ARMS-PCR) for differentiation of canine parvovirus-2 variants	1
Establishment of reverse genetics for genotype VII Newcastle disease virus and altering the cell tropism by inserting TMPRSS2 into the viral genome	1
Genetic characterization of influenza B virus and oseltamivir resistance in pediatric patients with acute respiratory infections: a cross-sectional study	1
Molecular functions of HAX1 during disease progress	1
Genetic analysis of human parainfluenza type 2 virus in Riyadh, Saudi Arabia	1
Peptide YY inhibits transcription and replication of hepatitis B virus by suppressing promoter/enhancer activity	1
Correction to: Complete genome sequence of a recombinant isolate of yambean mosaic virus from Canavalia ensiformis	1
MiR-BART1-3p and BART18-5p inhibit cell migration, proliferation and activate autophagy in Epstein-Barr virus-associated gastric cancer by targeting erythropoietin-producing human hepatocellular 2	1
Metagenomic sequencing determines complete infectious bronchitis virus (avian Gammacoronavirus) vaccine strain genomes and associated viromes in chicken clinical samples	1

The Citrus yellow mosaic badnavirus ORFI functions as a RNA-silencing suppressor	1
Characterization and genome analysis of Klebsiella phages with lytic activity against Klebsiella pneumoniae	1
Characterization and genomic analysis of a novel bacteriophage BUCT_49532 lysing Klebsiella pneumoniae	1
Lineage and sublineage analysis of human papillomavirus types 51 and 59 in Iranian women	1
Antibacterial effects of single phage and phage cocktail against multidrug-resistant Klebsiella pneumoniae isolated from diabetic foot ulcer	1
Identification and epidemiological analysis of a putative novel hantavirus in Australian flying foxes	1
Norovirus GI.5 [P4]: first report of the rare norovirus recombinant variant in Northeastern Mexico and its global epidemiological context	1
Comparative trachea transcriptome analysis in SPF broiler chickens infected with avian infectious bronchitis and avian influenza viruses	1
Whole genome sequencing and evolution analyses of Human metapneumovirus	1
Complete genomic sequences and comparative analysis of two Orf virus isolates from Guizhou Province and Jilin Province, China	1
First detection and diversity of astroviruses in wild migratory birds of Sakhalin Island, North Pacific	1
A genetically novel avian Hepatitis E virus in China	1
Effect of thymidine kinase-deficiency (∆ORF38) on neuropathogenicity of equine herpesvirus-1 in the mouse model and expression of neighboring genes	1
Aedes aegypti Totivirus identified in mosquitoes in the Brazilian Amazon region	1
Screening and identification of specific cluster miRNAs in N2a cells infected by H7N9 virus	1
Identification and genomic characterization of a novel HIV-1 unique recombinant form (CRF01_AE/CRF07_BC) in Zhejiang Province, China	1
The isolation and serotyping of foot-and-mouth disease virus in Iran during 2019–2022	1
Complete genome and molecular characterization of spiranthes mosaic virus 3 from Phlox paniculata	1
Shrimp classification for white spot syndrome detection through enhanced gated recurrent unit-based wild geese migration optimization algorithm	1
A virus like particle approach to study the Chikungunya virus envelope protein mutations	1
Molecular phylodynamics of infectious bursal disease viruses	1
Sequence analysis of the Spike, RNA-dependent RNA polymerase, and protease genes reveals a distinct evolutionary pattern of SARS-CoV-2 variants circulating in Yogyakarta and Central Java provinces, In	1
Genome characterization of fig umbra-like virus	1
Rapid detection of human adenovirus subgroup B using recombinase polymerase amplification assay	1
Nuclear respiratory factor 1 promotes the progression of EBV-associated gastric cancer and maintains EBV latent infection	1
Characterization of a breakthrough vaccine escape strain associated with overt hepatitis B virus infection	1
An increase in prevalence of recombinant GII.3[P12] norovirus in sporadic acute diarrhea in children in Nizhny Novgorod, Russia, 2018–2021	1