APMIS

Article	Citations
The human microbiome in disease and pathology	64
Electronic reporting of diagnostic laboratory test results from all healthcare sectors is a cornerstone of national preparedness and control of COVID‐19 in Denmark	58
Could SARS‐CoV‐2 infection affect male fertility and sexuality?	34
Pandemics: past, present, future	31
The Swedish public health response to COVID‐19	25
SARS‐CoV‐2 spike mRNA vaccine sequences circulate in blood up to 28 days after COVID‐19 vaccination	24
Human skin microbiota in health and disease	22
Role of IL‐22 in homeostasis and diseases of the skin	21
Current and novel diagnostics for orthopedic implant biofilm infections: a review	20
The gut microbiota can orchestrate the signaling pathways in colorectal cancer	18
USP7, negatively regulated by miR‐409‐5p, aggravates hypoxia‐induced cardiomyocyte injury	17
Prognostic role of TSPAN1, KIAA1324 and ESRP1 in prostate cancer	16
Interleukin‐9‐secreting CD4+ T cells regulate CD8+ T cells cytotoxicity in patients with acute coronary syndromes	15
Zoonotic and reverse zoonotic transmission of viruses between humans and pigs	15
Evaluation of Pseudomonas aeruginosa pathogenesis and therapeutics in military‐relevant animal infection models	15
Meta‐analysis of caries microbiome studies can improve upon disease prediction outcomes	14
PD‐L1 immunohistochemistry: Clones, cutoffs, and controversies	14
Salivary gland tumours in Iceland 1986–2015: a nationwide epidemiological analysis over a 30‐year time period	14
Our current clinical understanding of Candida biofilms: where are we two decades on?	13
Frequency and coexistence of KRAS, NRAS, BRAF and PIK3CA mutations and occurrence of MMR deficiency in Danish colorectal cancer patients	13
Aquaporin‐1 in breast cancer	13
The discovery of bacterial biofilm in patients with muscle invasive bladder cancer	13
Neuroinvasive potential of SARS‐CoV2 with neuroradiological and neuropathological findings: is the brain a target or a victim?	12
Azole resistance in Candida auris: mechanisms and combinatorial therapy	12
Toll‐like receptor 5 and 8 in hepatocellular carcinoma	11

The impact of mental models on the treatment and research of chronic infections due to biofilms	11
The COVID‐19 pandemic: key considerations for the epidemic and its control	11
Immunotyping in tubo‐ovarian high‐grade serous carcinoma by PD‐L1 and CD8+ T‐lymphocytes predicts disease‐free survival	11
SARS‐CoV‐2 superspreading in cities vs the countryside	11
Aquaporin‐5 in breast cancer	11
Pertussis seroprevalence among adults of reproductive age (20–39 years) in fourteen European countries	10
Automated assessment of Ki‐67 proliferation index in neuroendocrine tumors by deep learning	10
Accuracy of anterior nasal swab rapid antigen tests compared with RT‐PCR for massive SARS‐CoV‐2 screening in low prevalence population	10
Sclerosing epithelioid fibrosarcoma: in‐depth review of a genetically heterogeneous tumor	10
BUB1 predicts poor prognosis and immune status in liver hepatocellular carcinoma	10
Tertiary lymphoid structures and gastric cancer prognosis	10
Novel human in vitro vegetation simulation model for infective endocarditis	9
Altered gut microbiota in hepatocellular carcinoma: Insights into the pathogenic mechanism and preclinical to clinical findings	9
The Hammer vs Mitigation—A comparative retrospective register study of the Swedish and Danish national responses to the COVID‐19 pandemic in 2020	9
Prevalence of paediatric hyperinflammatory conditions in paediatric and adolescent hospitalized COVID‐19 patients: a systematic review and meta‐analysis	9
Serum metabolomic profiling reveals important difference between infants with and without subsequent recurrent wheezing in later childhood after RSV bronchiolitis	9
Biopsy quality is essential for preoperative prognostication in oral tongue cancer	9
The Inequality of Females in Bladder Cancer	9
Diagnostics with clinical microbiome‐based identification of microorganisms in patients with brain abscesses—a prospective cohort study	9
Aquaporins in pancreatic ductal adenocarcinoma	9
Regulation of the expression of human endogenous retroviruses: elements in fetal development and a possible role in the development of cancer and neurological diseases	8
Analyses of ABO blood groups with susceptibility and symptomatic variations of COVID‐19 infection, a questionnaire‐based survey	8
Identification of microorganisms directly from blood culture bottles with polymicrobial growth: comparison of FilmArray and direct MALDI‐TOF MS	8
Animal models of chronic and recurrent Pseudomonas aeruginosa lung infection: significance of macrolide treatment	8
Effectiveness of fluconazole as antifungal prophylaxis in cancer patients undergoing chemotherapy, radiotherapy, or immunotherapy: systematic review and meta‐analysis	8
Transcriptomic fingerprint of bacterial infection in lower extremity ulcers	8
Implant‐associated osteomyelitis: Development, characterisation, and application of a porcine model	7
Female reproductive tract microbiome and early miscarriages	7
Detection methods targeting the positive‐ and negative‐sense RNA transcripts from plus‐stranded RNA viruses	7
Dual role of B7‐H6 as a novel prognostic marker in hepatocellular carcinoma	7
Acinetobacter baumannii: insights towards a comprehensive approach for the prevention of outbreaks in health‐care facilities	7
Host‐microbe metatranscriptome reveals differences between acute and chronic infections in diabetes‐related foot ulcers	7
Biomarkers for iron metabolism among patients hospitalized with community‐acquired pneumonia caused by infection with SARS‐CoV‐2, bacteria, and influenza	7
Extensive microbiological respiratory tract specimen characterization in critically ill COVID‐19 patients	7
High prevalence of pharyngeal bacterial pathogens among healthy adolescents and young adults	7
Reduced frequency of T helper 17 and T helper 1 cells and their association with critical coronavirus disease 2019	7
Dynamics of skin microbiota in shoulder surgery infections	7
Silencing KLF16 inhibits oral squamous cell carcinoma cell proliferation by arresting the cell cycle and inducing apoptosis	6
Tourniquet‐induced ischemia and reperfusion in subcutaneous tissue, skeletal muscle, and calcaneal cancellous bone	6
A simple, safe and sensitive method for SARS‐CoV‐2 inactivation and RNA extraction for RT‐qPCR	6
Prognostic significance of atypical mitotic figures in smooth muscle tumors of uncertain malignant potential (STUMP) of the uterus and uterine adnexa	6
Prognostic implications of the tumor immune microenvironment and immune checkpoint pathway in primary central nervous system diffuse large B‐cell lymphoma in the North Indian population	6
Potential impact of the COVID‐19 pandemic on the national and regional incidence, epidemiology and diagnostic testing of chlamydia and gonorrhoea in Sweden, 2020	6
Human rhinovirus 16 induces antiviral and inflammatory response in the human vascular endothelium	6
Opportunistic non‐communicable diseases in times of COVID‐19	6
Do mast cells contribute to the continued survival of vertebrates?	6
Clinicopathological and molecular characteristics of the alpha‐fetoprotein–producing gastric cancer: emphasis on two major subtypes	6
Weight‐based cefuroxime dosing provides comparable orthopedic target tissue concentrations between weight groups – a microdialysis porcine study	6
Bacterial invasion of the submicron osteocyte lacuna–canaliculi network (OLCN): a part of osteomyelitis disease biology	6
Limitations of using 16S rRNA microbiome sequencing to predict oral squamous cell carcinoma	6

Performance of PCR‐based syndromic testing compared to bacterial culture in patients with suspected pneumonia applying microscopy for quality assessment	6
Serum ACE as a prognostic biomarker in COVID‐19: a case series	6
The panel of syntaxin 1 and insulinoma‐associated protein 1 outperforms classic neuroendocrine markers in pulmonary neuroendocrine neoplasms	6
Nuclear overexpression levels of MAGE‐A3 predict poor prognosis in patients with prostate cancer	6
A unique case of Fusobacterium nucleatum spondylodiscitis communicating with a pleural empyema through a fistula	5
The role of Pap smear in the diagnostics of endocervical adenocarcinoma	5
Good's syndrome: brief overview of an enigmatic immune deficiency	5
Antifungal drug resistance in Candida: a special emphasis on amphotericin B	5
Malignant peripheral nerve sheath tumors arising from schwannomas: case series and literature review	5
Vitamin A deficiency in K14E7HPV expressing transgenic mice facilitates the formation of malignant cervical lesions	5
Clinical aspects of histological and hormonal parameters in boys with cryptorchidism	5
New contributions on chronic low back pain: disc infection or contaminated cultures?	5
Dynamics of a Staphylococcus aureus infective endocarditis simulation model	5
Distinct contribution of hyperbaric oxygen therapy to human neutrophil function and antibiotic efficacy against Staphylococcus aureus	5
Blocking coprophagy increases the levels of inflammation and depression in healthy mice as well as mice receiving fecal microbiota transplantation from disease model mice donors	5
Reliability of Ki67 visual scoring app compared to eyeball estimate and digital image analysis and its prognostic significance in hormone receptor‐positive breast cancer	5
Highly sensitive duplex MSI test and BAT40 germline polymorphism	5
Stanford parameters stratify the risk of recurrence in gynecologic smooth muscle tumors of uncertain malignant potential	5
Autopsies in pandemics – a perspective on barriers and benefits. Is it time for a revival?	5
High YAP and TEAD4 immunolabelings are associated with poor prognosis in patients with gallbladder cancer	5
A metatranscriptomic approach to explore longitudinal tissue specimens from non‐healing diabetes related foot ulcers	5
Emergence of circulating influenza A H3N2 viruses with genetic drift in the matrix gene: be alert of false‐negative test results	5
The use of core genome multilocus sequence typing to determine the duration of vancomycin‐resistant Enterococcus faecium outbreaks	5
Historical and contemporary views on cholera transmission: are we repeating past discussions? Can lessons learned from cholera be applied to COVID‐19?	5
Location of OprD porin in Pseudomonas aeruginosa clinical isolates	5
Vancomycin‐resistant Enterococcus faecium: should we screen on admission?	4
Spindle cell tumors of the pleura and the peritoneum: pathologic diagnosis and updates	4
Cranberry‐lingonberry juice affects the gut and urinary microbiome in children ‐ a randomized controlled trial	4
Comparative evaluation of chemiluminescent immunoassay and enzyme‐linked immunosorbent assays for the diagnosis of West Nile virus infections	4
Aspergilloma complicating previous COVID‐19 pneumonitis – a case report	4
Evaluation of a polymyxin drop test for polymyxin resistance detection among non‐fermentative gram‐negative rods and enterobacterales resistant to carbapenems	4
Vaginal microbiome following orally administered probiotic	4
Protein O‐mannosyltransferase Rv1002c contributes to low cell permeability, biofilm formation in vitro, and mycobacterial survival in mice	4
Endotracheal lactate reflects lower respiratory tract infections and inflammation in intubated patients	4
On the history of human coronaviruses	4
Dynamic distribution of gut microbiota during Alzheimer's disease progression in a mice model	4
Multiplex immunofluorescence staining of coverslip‐mounted paraffin‐embedded tissue sections	4
A novel fully human recombinant antibody neutralizing α‐hemolysin of Staphylococcus aureus	4
Systematic review on the current knowledge and use of single‐cell RNA sequencing in head and neck cancer	3
Cytokeratin 13 (CK13) expression in cancer: a tissue microarray study on 10,439 tumors	3
PD‐L1 expression and FGFR‐mutations among Danish patients diagnosed with metastatic urothelial carcinoma: A retrospective and descriptive study	3
Native aortic valve Staphylococcus warneri endocarditis after COVID‐19 infection: a case report and a review of literature	3
Gastrointestinal dysbiosis and Escherichia coli pathobionts in inflammatory bowel diseases	3
STK11 mutation affects the killing effect of NK cells to promote the progression of lung adenocarcinoma	3
Circulating miR‐15b, miR‐34a and miR‐218 as promising novel early low‐invasive biomarkers of cervical carcinogenesis	3
Formulation of a recombinant HIV‐1 polytope candidate vaccine with naloxone/alum mixture: induction of multi‐cytokine responses with a higher regulatory mechanism	3
Immunohistochemical somatostatin receptor expression in insulinomas	3
Circ_0006873 suppresses the osteogenic differentiation of human‐derived mesenchymal stem cells through mediating miR‐20a/SMURF2 axis in vitro	3
Elevated expression of the AIM2 gene in response to Helicobacter pylori along with the decrease of NLRC4 inflammasome is associated with peptic ulcer development	3
Study of humoral and cellular immunity in vaccinated with mRNA‐1273	3
Human lung vascular endothelium may limit viral replication and recover in time upon the infection with rhinovirus HRV16	3
Inflammatory mediators in bacterial vaginosis: The role of cytokines	3
HIV‐associated infective native aortic aneurysms	3
Screening the Tocriscreen™ bioactive compound library in search for inhibitors of Candida biofilm formation	3
The microbiome in the pathogenesis of lung cancer	3
Antizyme inhibitor 2 (AZIN2) associates with better prognosis of head and neck minor salivary gland adenoid cystic carcinoma	3
Molecular epidemiology of community‐ and hospital‐associated Clostridioides difficile infections in Jönköping, Sweden, October 2017 – March 2018	3
Analysis of the correlation between P27 expression and Helicobacter pylori infection in gastric cancer	3
The potential importance of autophagy genes expression profile dysregulation and ATG polymorphisms in COVID‐19 pathogenesis	3
Is clindamycin a potential treatment for prostatitis?	3
A heptadeca amino acid peptide subunit of cathelicidin LL‐37 has previously unreported antifungal activity	2
Does the route matter? A preclinical review of mesenchymal stromal cell delivery to the kidney	2
Association of Toll‐like receptor 2 rs111200466 polymorphism with low serum levels of IL‐33 in early childhood	2
Louis Pasteur and the birth of microbiology in Denmark	2
Investigating the role of Candida albicans as a universal substrate for oral bacteria using a transcriptomic approach: implications for interkingdom biofilm control?	2
Invasive pulmonary aspergillosis in the intensive care unit: current challenges and best practices	2
PD‐L1 and PD‐1 expression in thyroid follicular epithelial dysplasia: Hashimoto thyroiditis related atypia and potential papillary carcinoma precursor	2
A survey of mechanisms underlying current and potential COVID‐19 vaccines	2
Associations between invasive aspergillosis and cytomegalovirus in lung transplant recipients: a nationwide cohort study	2
Metabolic drives affecting Th17/Treg gene expression changes and differentiation: impact on immune‐microenvironment regulation	2
Prognostic histological markers in oral tongue squamous cell carcinoma patients treated with (chemo)radiotherapy	2
Murine burn lesion model for studying acute and chronic wound infections	2
Reduced phosphatidylcholine level in the intestinal mucus layer of prediabetic NOD mice	2
An insight on the eye bacterial microbiota and its role on dry eye disease	2
Evaluation of transcription factors and cytokine expressions of T‐cell subsets in CD19 deficiency and their possible relationship with autoimmune disease	2
Mucosal microbiotas and their role in stem cell transplantation	2
Intestinal metaplasia is a precursor lesion for sinonasal intestinal‐type adenocarcinoma: genomic investigation of a case proving this hypothesis	2
Expression of EPHA5 in lung adenocarcinoma is associated with lymph node metastasis and EGFR mutation	2
Pentraxin‐3 detected in human saliva shows limited correlation with biomarkers associated with systemic inflammation	2
Toll‐like receptors 3, 7, 8, and 9 in gastric cancer	2

Ectopic thyroid in EBUS: experience from a quality assurance programme	2
Increased sputum lactate during oral glucose tolerance test in cystic fibrosis	2
Immunohistochemical detection of double‐stranded RNA in formalin‐fixed paraffin‐embedded tissue	2
Whole genome sequencing reveals two genetically distinct MRSA outbreaks among people who inject drugs and homeless people in Copenhagen	2
E‐cadherin and aquaporin‐3 are downregulated in wound edges of human chronic wounds	2
Aneurysmal bone cyst and osteoblastoma after neoadjuvant denosumab: histologic spectrum and potential diagnostic pitfalls	2
Predicting the clinical efficacy of JAK inhibitor treatment for patients with rheumatoid arthritis based on Fas+ T cell subsets	2
Diagnostic utility of the combined use of HNF4A and GATA3 in distinction between primary and metastatic breast and gastric carcinomas	2
Mycoplasma genitalium prevalence and macrolide resistance‐associated mutations and coinfection with Chlamydia trachomatis in Southern Jutland, Denmark	2
A porcine model of subcutaneous Staphylococcus aureus infection: a pilot study	2
Pathophysiological microenvironments in oral candidiasis	2
Characterization of in vitro 3D cultures	2
Rifampicin does not reduce moxifloxacin concentrations at the site of infection and may not improve treatment outcome of a one‐stage exchange surgery protocol of implant‐associated osteomyelitis lesio	2
Preoperative BRAFV600E mutation detection in thyroid carcinoma by immunocytochemistry	2
Characterization of a lytic EBP bacteriophage with large size genome against Enterobacter cloacae	2
Single cells and bacterial biofilm populations in chronic wound infections	2
Primary skin abscess microbiota a systematic review	2
Nursery outbreak caused by enteroaggregative Escherichia coli serogroup O111:H21	1
200 years of pasteurizing the world of science	1
Epidemics before microbiology: Stories from the plague in 1711 and cholera in 1853 in Copenhagen	1
Antibiotic resistance and biofilm‐forming ability of α‐toxin‐positiveClostridium septicumisolates worsen patient prognosis	1
Antimicrobial resistance of Pseudomonas aeruginosa in a cystic fibrosis population after introduction of a novel cephalosporin/β‐lactamase inhibitor combination	1
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Is there a role of epigenetics in gut microbiome and neurological disorders?	1
Vaginal microecology and its role in human papillomavirus infection and human papillomavirus associated cervical lesions	1
Diagnostic performance of patient self‐collected oral swab (tongue and cheek) in comparison with healthcare worker‐collected nasopharyngeal swab for severe acute respiratory syndrome coronavirus‐2 det	1
Mapping bacterial biofilm on explanted orthopedic hardware: An analysis of 14 consecutive cases	1
Shiga toxin‐producing Escherichia coli (STEC) stool multiplex PCR can replace culture for clinical diagnosis and follow‐up	1
Injection site microflora in persons with diabetes: why needle reuse is not associated with increased infections?	1
Screening the medicine for malaria venture's Pandemic Response Box to identify novel inhibitors of Candida albicans and Candida auris biofilm formation	1
Exploring the role of mesenchymal stem cells in modulating immune responses via Treg and Th2 cell activation: insights from mouse model of multiple sclerosis	1
Genomic characterization of beta‐haemolytic streptococci isolated from prosthetic joint infections	1
Aetiological profile of acute encephalitis syndrome in Assam, India, during a 4‐year period from 2019 to 2022	1
Should a fourth category be added to the international tumor budding consensus conference tumor budding scoring system in colorectal adenocarcinomas?	1
The expression and prognostic relevance of CDH3 in tongue squamous cell carcinoma	1
Association of sickle cell trait with β‐cell dysfunction and physical activity in adults living with and without HIV in Tanzania	1
Development of a reverse transcription loop‐mediated isothermal amplification assay with novel quantitative pH biosensor readout method for SARS‐CoV‐2 detec	1
Infectious native aortic aneurysm with negative blood cultures: do not forget the pneumococcal urinary antigen test!	1
Characteristics of de novo cancer in liver transplant recipients	1
Fourier‐transform infrared spectroscopy imaging is a useful adjunct to routine histopathology to identify failure of polyethylene inlays in revision total hip arthroplasty	1
Short communication: dog bite and back pain	1
Inter‐observer agreement of tumor infiltrating lymphocytes in primary HER2‐positive breast cancer and correlation between tissue microarray and full tumor‐sections	1
Undifferentiated–dedifferentiated endometrial carcinoma; the reappearance of an old friend with insights into the new data	1
Is increased Staphylococcus aureus colonization during military service caused by specific genotypes? Molecular examination of long‐term carriage in a prospective cohort study	1
Short communication: first case of bacteraemia caused by Dielma fastidiosa in a patient hospitalized with diverticulitis	1
Diarrhoea‐causing microorganisms are rare in adult patients undergoing diagnostic laparoscopy for suspected appendicitis: a prospective observational cohort study	1
Gene polymorphisms of TLR10: effects on bacterial meningitis outcomes in Angolan children	1
Chondromatous metaplasia within native cardiac valves: clinicopathologic characterization with particular focus upon aortic valves	1
Cytohistological findings in HPV‐negative cases from HPV primary screening programme: quality assurance study	1
Prevalence, molecular markers, and outcome of bronchial squamous carcinoma in situ in high‐risk subjects	1
Inhibiting pathogenicity of vaginal Candida albicans by lactic acid bacteria and MS analysis of their extracellular compounds	1
Close monitoring and early intervention: management principles for cystic fibrosis in Denmark	1
Immune responses to mRNA‐based vaccines given as a third COVID‐19 vaccine dose in people living with HIV—a literature review	1
Application of computer‐generated images to train pattern recognition used in semiquantitative immunohistochemistry scoring	1
Polyphyllin I, a strong antifungal compound against Candida albicans	1
Beta‐hemolytic streptococci A, C, and G are susceptible to cloxacillin	1
Pre‐existing, treatment‐specific resistance‐associated substitutions in hepatitis C virus genotype 1 and 3 and viral RNA titers during treatment with direct‐acting antivirals	1
Total fecal IgA levels increase and natural IgM antibodies decrease after gastric bypass surgery	1
Patients with tinea pedis and onychomycosis are more likely to use disinfectants when washing textiles than controls	1
Histopathological Helsinki score of colorectal liver metastases predicts survival after liver resection	1
APMIS pandemic editorial	1
Mutation of KRAS in colorectal adenocarcinoma in Greenland	1
Misleading mental models: Ceci n’est pas un biofilm	0
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Emergence and fixation of SARS‐CoV‐2 minority variants in a chronically infected patient receiving therapy in Denmark	0
The infectious capacity of Enterococcus faecalis, Staphylococcus aureus, and Staphylococcus saprophyticus in a porcine model of urinary tract infection	0
Celebrating a century of APMIS: a legacy of pathology, microbiology, and immunology	0
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Routine use of MSI testing in colorectal cancer using a proposed algorithm	0
The effect of gamma and microwave radiation sterilization on periodontological grafts for microbiological evaluation	0
Activity of propyl‐propane‐thiosulfinate and propyl‐propane‐thiosulfonate against carbapenem‐resistant Gram‐negative bacteria	0
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Differences in gene expression despite identical histomorphology in sinonasal intestinal‐type adenocarcinoma and metastases from colorectal adenocarcinoma	0
APMIS 2022 focus issue on human microbiome in disease and pathology	0
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HERC5: a comprehensive in silico analysis of its diagnostic, prognostic, and therapeutic potential in cancer	0
In vitro determination of the susceptibility of Malassezia furfur biofilm to different commercially used antimicrobials	0
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Cefepime distribution by microdialysis in peritoneal fluid of rats with or without experimental peritonitis	0
Metabolic syndrome, soluble CD40L, and biomarkers of endothelial dysfunction in people living with HIV	0
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Centennial celebrations of the Danish Pasteur Society	0
Real‐world data confirm elexacftor/tezacaftor/ivacaftor modulators halves sweat chloride concentration in eligible people with cystic fibrosis	0
Peritumoral histopathologic findings in patients with chronic viral hepatitis‐associated hepatocellular carcinoma	0
Reply to “Comment on micro‐ and nanorobots for biofilm eradication”	0
Performance of automated antimicrobial susceptibility testing for the detection of antimicrobial resistance in gram‐negative bacteria: a NordicAST study	0
FilmArray (BCID2) provides essential and timely results in bloodstream infections in small acute care hospitals without conventional microbiology services	0
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