APMIS

Article	Citations
Electronic reporting of diagnostic laboratory test results from all healthcare sectors is a cornerstone of national preparedness and control of COVID‐19 in Denmark	55
The human microbiome in disease and pathology	48
Could SARS‐CoV‐2 infection affect male fertility and sexuality?	34
Pandemics: past, present, future	28
The Swedish public health response to COVID‐19	25
Current and novel diagnostics for orthopedic implant biofilm infections: a review	19
Human skin microbiota in health and disease	19
Role of IL‐22 in homeostasis and diseases of the skin	19
SARS‐CoV‐2 spike mRNA vaccine sequences circulate in blood up to 28 days after COVID‐19 vaccination	18
The gut microbiota can orchestrate the signaling pathways in colorectal cancer	16
Prognostic role of TSPAN1, KIAA1324 and ESRP1 in prostate cancer	16
Pathogen‐associated molecular patterns and extracellular Hsp70 interplay in NLRP3 inflammasome activation in monocytic and bronchial epithelial cellular models of COPD exacerbations	16
Evaluation of Pseudomonas aeruginosa pathogenesis and therapeutics in military‐relevant animal infection models	15
Interleukin‐9‐secreting CD4+ T cells regulate CD8+ T cells cytotoxicity in patients with acute coronary syndromes	15
USP7, negatively regulated by miR‐409‐5p, aggravates hypoxia‐induced cardiomyocyte injury	15
Salivary gland tumours in Iceland 1986–2015: a nationwide epidemiological analysis over a 30‐year time period	14
Neuroinvasive potential of SARS‐CoV2 with neuroradiological and neuropathological findings: is the brain a target or a victim?	13
Overview of rearing and testing conditions and a guide for optimizing Galleria mellonella breeding and use in the laboratory for scientific purposes	13
Aquaporin‐1 in breast cancer	12
The effect of calcitriol and all‐trans retinoic acid on T‐bet, IFN‐γ, GATA3 and IL‐4 genes expression in experimental autoimmune encephalomyelitis	12
Frequency and coexistence of KRAS, NRAS, BRAF and PIK3CA mutations and occurrence of MMR deficiency in Danish colorectal cancer patients	12
The discovery of bacterial biofilm in patients with muscle invasive bladder cancer	12
Zoonotic and reverse zoonotic transmission of viruses between humans and pigs	11
The COVID‐19 pandemic: key considerations for the epidemic and its control	11
Thyroid cancer metastasis is associated with an overabundance of defective follicular helper T cells	11

Toll‐like receptor 5 and 8 in hepatocellular carcinoma	11
PD‐L1 immunohistochemistry: Clones, cutoffs, and controversies	11
VGLL4 with low YAP expression is associated with favorable prognosis in colorectal cancer	11
Meta‐analysis of caries microbiome studies can improve upon disease prediction outcomes	11
Our current clinical understanding of Candida biofilms: where are we two decades on?	11
The impact of mental models on the treatment and research of chronic infections due to biofilms	11
Immunotyping in tubo‐ovarian high‐grade serous carcinoma by PD‐L1 and CD8+ T‐lymphocytes predicts disease‐free survival	11
SARS‐CoV‐2 superspreading in cities vs the countryside	10
Automated assessment of Ki‐67 proliferation index in neuroendocrine tumors by deep learning	10
Accuracy of anterior nasal swab rapid antigen tests compared with RT‐PCR for massive SARS‐CoV‐2 screening in low prevalence population	9
Prevalence of paediatric hyperinflammatory conditions in paediatric and adolescent hospitalized COVID‐19 patients: a systematic review and meta‐analysis	9
Aquaporin‐5 in breast cancer	9
The Inequality of Females in Bladder Cancer	9
Novel human in vitro vegetation simulation model for infective endocarditis	9
Sclerosing epithelioid fibrosarcoma: in‐depth review of a genetically heterogeneous tumor	9
Pertussis seroprevalence among adults of reproductive age (20–39 years) in fourteen European countries	9
Serum metabolomic profiling reveals important difference between infants with and without subsequent recurrent wheezing in later childhood after RSV bronchiolitis	8
Evaluation of analytical accuracy of HER2 status in patients with breast cancer	8
Analyses of ABO blood groups with susceptibility and symptomatic variations of COVID‐19 infection, a questionnaire‐based survey	8
Regulation of the expression of human endogenous retroviruses: elements in fetal development and a possible role in the development of cancer and neurological diseases	8
Tertiary lymphoid structures and gastric cancer prognosis	8
Biopsy quality is essential for preoperative prognostication in oral tongue cancer	8
Transcriptomic fingerprint of bacterial infection in lower extremity ulcers	8
Diagnostics with clinical microbiome‐based identification of microorganisms in patients with brain abscesses—a prospective cohort study	8
The Hammer vs Mitigation—A comparative retrospective register study of the Swedish and Danish national responses to the COVID‐19 pandemic in 2020	8
Reduced frequency of T helper 17 and T helper 1 cells and their association with critical coronavirus disease 2019	7
Altered gut microbiota in hepatocellular carcinoma: Insights into the pathogenic mechanism and preclinical to clinical findings	7
Canola oilseed‐ and Escherichia coli‐ derived hepatitis C virus (HCV) core proteins adjuvanted with oil bodies, induced robust Th1‐oriented immune responses in immunized mice	7
Azole resistance in Candida auris: mechanisms and combinatorial therapy	7
Host‐microbe metatranscriptome reveals differences between acute and chronic infections in diabetes‐related foot ulcers	7
IgG4‐positive plasma cells in Hashimoto thyroiditis: IgG4‐related disease or inflammation‐related IgG4‐positivity?	7
Identification of microorganisms directly from blood culture bottles with polymicrobial growth: comparison of FilmArray and direct MALDI‐TOF MS	7
Dual role of B7‐H6 as a novel prognostic marker in hepatocellular carcinoma	7
Aquaporins in pancreatic ductal adenocarcinoma	7
Do mast cells contribute to the continued survival of vertebrates?	6
Prognostic implications of the tumor immune microenvironment and immune checkpoint pathway in primary central nervous system diffuse large B‐cell lymphoma in the North Indian population	6
Acinetobacter baumannii: insights towards a comprehensive approach for the prevention of outbreaks in health‐care facilities	6
Potential impact of the COVID‐19 pandemic on the national and regional incidence, epidemiology and diagnostic testing of chlamydia and gonorrhoea in Sweden, 2020	6
Female reproductive tract microbiome and early miscarriages	6
BUB1 predicts poor prognosis and immune status in liver hepatocellular carcinoma	6
Biomarkers for iron metabolism among patients hospitalized with community‐acquired pneumonia caused by infection with SARS‐CoV‐2, bacteria, and influenza	6
The panel of syntaxin 1 and insulinoma‐associated protein 1 outperforms classic neuroendocrine markers in pulmonary neuroendocrine neoplasms	6
Nuclear overexpression levels of MAGE‐A3 predict poor prognosis in patients with prostate cancer	6
Implant‐associated osteomyelitis: Development, characterisation, and application of a porcine model	6
High prevalence of pharyngeal bacterial pathogens among healthy adolescents and young adults	6
Tourniquet‐induced ischemia and reperfusion in subcutaneous tissue, skeletal muscle, and calcaneal cancellous bone	6
Dynamics of skin microbiota in shoulder surgery infections	6
Serum ACE as a prognostic biomarker in COVID‐19: a case series	6
Animal models of chronic and recurrent Pseudomonas aeruginosa lung infection: significance of macrolide treatment	6
Extensive microbiological respiratory tract specimen characterization in critically ill COVID‐19 patients	6

Human rhinovirus 16 induces antiviral and inflammatory response in the human vascular endothelium	6
Performance of PCR‐based syndromic testing compared to bacterial culture in patients with suspected pneumonia applying microscopy for quality assessment	6
Clinicopathological and molecular characteristics of the alpha‐fetoprotein–producing gastric cancer: emphasis on two major subtypes	5
A possible interplay between HR‐HPV and stemness in tumor development: an in vivo investigation of CD133 as a putative marker of cancer stem cell in HPV18‐infected KB cell line	5
Distinct contribution of hyperbaric oxygen therapy to human neutrophil function and antibiotic efficacy against Staphylococcus aureus	5
Opportunistic non‐communicable diseases in times of COVID‐19	5
Highly sensitive duplex MSI test and BAT40 germline polymorphism	5
Detection methods targeting the positive‐ and negative‐sense RNA transcripts from plus‐stranded RNA viruses	5
Prognostic significance of atypical mitotic figures in smooth muscle tumors of uncertain malignant potential (STUMP) of the uterus and uterine adnexa	5
Weight‐based cefuroxime dosing provides comparable orthopedic target tissue concentrations between weight groups – a microdialysis porcine study	5
Silencing KLF16 inhibits oral squamous cell carcinoma cell proliferation by arresting the cell cycle and inducing apoptosis	5
Dynamics of a Staphylococcus aureus infective endocarditis simulation model	5
Reliability of Ki67 visual scoring app compared to eyeball estimate and digital image analysis and its prognostic significance in hormone receptor‐positive breast cancer	5
Autopsies in pandemics – a perspective on barriers and benefits. Is it time for a revival?	5
The role of Pap smear in the diagnostics of endocervical adenocarcinoma	5
Stanford parameters stratify the risk of recurrence in gynecologic smooth muscle tumors of uncertain malignant potential	5
High YAP and TEAD4 immunolabelings are associated with poor prognosis in patients with gallbladder cancer	5
Emergence of circulating influenza A H3N2 viruses with genetic drift in the matrix gene: be alert of false‐negative test results	5
A metatranscriptomic approach to explore longitudinal tissue specimens from non‐healing diabetes related foot ulcers	5
Malignant peripheral nerve sheath tumors arising from schwannomas: case series and literature review	5
The use of core genome multilocus sequence typing to determine the duration of vancomycin‐resistant Enterococcus faecium outbreaks	4
Vancomycin‐resistant Enterococcus faecium: should we screen on admission?	4
Vitamin A deficiency in K14E7HPV expressing transgenic mice facilitates the formation of malignant cervical lesions	4
PCSK2 expression in neuroendocrine tumors points to a midgut, pulmonary, or pheochromocytoma–paraganglioma origin	4
Molecular characterization of human adenoviruses associated with respiratory infection in Turkey	4
Protein O‐mannosyltransferase Rv1002c contributes to low cell permeability, biofilm formation in vitro, and mycobacterial survival in mice	4
A unique case of Fusobacterium nucleatum spondylodiscitis communicating with a pleural empyema through a fistula	4
Good's syndrome: brief overview of an enigmatic immune deficiency	4
Blocking coprophagy increases the levels of inflammation and depression in healthy mice as well as mice receiving fecal microbiota transplantation from disease model mice donors	4
Effectiveness of fluconazole as antifungal prophylaxis in cancer patients undergoing chemotherapy, radiotherapy, or immunotherapy: systematic review and meta‐analysis	4
On the history of human coronaviruses	4
A simple, safe and sensitive method for SARS‐CoV‐2 inactivation and RNA extraction for RT‐qPCR	4
Evaluation of a polymyxin drop test for polymyxin resistance detection among non‐fermentative gram‐negative rods and enterobacterales resistant to carbapenems	4
Comparative evaluation of chemiluminescent immunoassay and enzyme‐linked immunosorbent assays for the diagnosis of West Nile virus infections	4
Historical and contemporary views on cholera transmission: are we repeating past discussions? Can lessons learned from cholera be applied to COVID‐19?	4
Bacterial invasion of the submicron osteocyte lacuna–canaliculi network (OLCN): a part of osteomyelitis disease biology	4
Aspergilloma complicating previous COVID‐19 pneumonitis – a case report	4
Limitations of using 16S rRNA microbiome sequencing to predict oral squamous cell carcinoma	4
Location of OprD porin in Pseudomonas aeruginosa clinical isolates	4
Expression of laminin‐5 gamma 2 chain predicts invasion of extramammary Paget’s disease cell	4
Performance analysis of high‐throughput HPV testing on three automated workflows	4
Cranberry‐lingonberry juice affects the gut and urinary microbiome in children ‐ a randomized controlled trial	4
Clinical aspects of histological and hormonal parameters in boys with cryptorchidism	4
A novel fully human recombinant antibody neutralizing α‐hemolysin of Staphylococcus aureus	4
Molecular epidemiology of community‐ and hospital‐associated Clostridioides difficile infections in Jönköping, Sweden, October 2017 – March 2018	3
STK11 mutation affects the killing effect of NK cells to promote the progression of lung adenocarcinoma	3
Spindle cell tumors of the pleura and the peritoneum: pathologic diagnosis and updates	3
New contributions on chronic low back pain: disc infection or contaminated cultures?	3
Can a gluten‐free diet be partly protective for COVID‐19 infection?	3
Cytokeratin 13 (CK13) expression in cancer: a tissue microarray study on 10,439 tumors	3
Study of humoral and cellular immunity in vaccinated with mRNA‐1273	3
HIV‐associated infective native aortic aneurysms	3
Is clindamycin a potential treatment for prostatitis?	3
Multiplex immunofluorescence staining of coverslip‐mounted paraffin‐embedded tissue sections	3
Screening the Tocriscreen™ bioactive compound library in search for inhibitors of Candida biofilm formation	3
PD‐L1 expression and FGFR‐mutations among Danish patients diagnosed with metastatic urothelial carcinoma: A retrospective and descriptive study	3
Subtyping of male breast cancer by PAM50 and immunohistochemistry: a pilot study of a consecutive Danish cohort	3
Human lung vascular endothelium may limit viral replication and recover in time upon the infection with rhinovirus HRV16	3
Circulating miR‐15b, miR‐34a and miR‐218 as promising novel early low‐invasive biomarkers of cervical carcinogenesis	3
The potential importance of autophagy genes expression profile dysregulation and ATG polymorphisms in COVID‐19 pathogenesis	3
Formulation of a recombinant HIV‐1 polytope candidate vaccine with naloxone/alum mixture: induction of multi‐cytokine responses with a higher regulatory mechanism	3
The microbiome in the pathogenesis of lung cancer	3
Elevated expression of the AIM2 gene in response to Helicobacter pylori along with the decrease of NLRC4 inflammasome is associated with peptic ulcer development	3
Immunohistochemical somatostatin receptor expression in insulinomas	2
Diagnostic utility of the combined use of HNF4A and GATA3 in distinction between primary and metastatic breast and gastric carcinomas	2
Comparison of growth and morphology of Borrelia burgdorferi sensu lato in BSK‐H and BSK‐II media stored for prolonged periods	2
Circ_0006873 suppresses the osteogenic differentiation of human‐derived mesenchymal stem cells through mediating miR‐20a/SMURF2 axis in vitro	2
Invasive pulmonary aspergillosis in the intensive care unit: current challenges and best practices	2
Rifampicin does not reduce moxifloxacin concentrations at the site of infection and may not improve treatment outcome of a one‐stage exchange surgery protocol of implant‐associated osteomyelitis lesio	2
A survey of mechanisms underlying current and potential COVID‐19 vaccines	2
Characterization of a lytic EBP bacteriophage with large size genome against Enterobacter cloacae	2
Single cells and bacterial biofilm populations in chronic wound infections	2
Murine burn lesion model for studying acute and chronic wound infections	2
Disturbance in the oropharyngeal microbiota in relation to antibiotic and proton pump inhibitor medication and length of hospital stay	2
Vaginal microbiome following orally administered probiotic	2
Louis Pasteur and the birth of microbiology in Denmark	2
Systematic review on the current knowledge and use of single‐cell RNA sequencing in head and neck cancer	2
Mucosal microbiotas and their role in stem cell transplantation	2
Antifungal drug resistance in Candida: a special emphasis on amphotericin B	2
Antizyme inhibitor 2 (AZIN2) associates with better prognosis of head and neck minor salivary gland adenoid cystic carcinoma	2

Pentraxin‐3 detected in human saliva shows limited correlation with biomarkers associated with systemic inflammation	2
PD‐L1 and PD‐1 expression in thyroid follicular epithelial dysplasia: Hashimoto thyroiditis related atypia and potential papillary carcinoma precursor	2
Preoperative BRAFV600E mutation detection in thyroid carcinoma by immunocytochemistry	2
Endotracheal lactate reflects lower respiratory tract infections and inflammation in intubated patients	2
Whole genome sequencing reveals two genetically distinct MRSA outbreaks among people who inject drugs and homeless people in Copenhagen	2
Primary skin abscess microbiota a systematic review	2
Nephrotic syndrome and pulmonary hypertension as complications of intravenous drug abuse	2
Evaluation of transcription factors and cytokine expressions of T‐cell subsets in CD19 deficiency and their possible relationship with autoimmune disease	2
The expression and prognostic relevance of programmed cell death protein 1 in tongue squamous cell carcinoma	2
Aneurysmal bone cyst and osteoblastoma after neoadjuvant denosumab: histologic spectrum and potential diagnostic pitfalls	2
Ectopic thyroid in EBUS: experience from a quality assurance programme	2
Mycoplasma genitalium prevalence and macrolide resistance‐associated mutations and coinfection with Chlamydia trachomatis in Southern Jutland, Denmark	2
Gastrointestinal dysbiosis and Escherichia coli pathobionts in inflammatory bowel diseases	2
Intestinal metaplasia is a precursor lesion for sinonasal intestinal‐type adenocarcinoma: genomic investigation of a case proving this hypothesis	2
Characterization of in vitro 3D cultures	2
Early IL‐2 treatment of mice with Pseudomonas aeruginosa pneumonia induced PMN‐dominating response and reduced lung pathology	2
Analysis of the correlation between P27 expression and Helicobacter pylori infection in gastric cancer	2
Dynamic distribution of gut microbiota during Alzheimer's disease progression in a mice model	2
A heptadeca amino acid peptide subunit of cathelicidin LL‐37 has previously unreported antifungal activity	2
Reduced phosphatidylcholine level in the intestinal mucus layer of prediabetic NOD mice	2
Association of Toll‐like receptor 2 rs111200466 polymorphism with low serum levels of IL‐33 in early childhood	2
Genomic characterization of beta‐haemolytic streptococci isolated from prosthetic joint infections	1
Is there a role of epigenetics in gut microbiome and neurological disorders?	1
Mutation of KRAS in colorectal adenocarcinoma in Greenland	1
BRAF mutation, TERT promoter mutation, and HER2 amplification in sporadic or neurofibromatosis‐related neurofibromas and malignant peripheral nerve sheath tumors: do these molecules have a signature i	1
Immunohistochemical detection of double‐stranded RNA in formalin‐fixed paraffin‐embedded tissue	1
Investigating the role of Candida albicans as a universal substrate for oral bacteria using a transcriptomic approach: implications for interkingdom biofilm control?	1
Prevalence, molecular markers, and outcome of bronchial squamous carcinoma in situ in high‐risk subjects	1
Association of sickle cell trait with β‐cell dysfunction and physical activity in adults living with and without HIV in Tanzania	1
Characteristics of de novo cancer in liver transplant recipients	1
Evaluation of the Xpert MTB/RIF test accuracy for diagnosis of tuberculosis in areas with a moderate tuberculosis burden	1
Mapping bacterial biofilm on explanted orthopedic hardware: An analysis of 14 consecutive cases	1
	1
Beta‐hemolytic streptococci A, C, and G are susceptible to cloxacillin	1
Does the route matter? A preclinical review of mesenchymal stromal cell delivery to the kidney	1
Metabolic drives affecting Th17/Treg gene expression changes and differentiation: impact on immune‐microenvironment regulation	1
Short communication: dog bite and back pain	1
Associations between invasive aspergillosis and cytomegalovirus in lung transplant recipients: a nationwide cohort study	1
Is increased Staphylococcus aureus colonization during military service caused by specific genotypes? Molecular examination of long‐term carriage in a prospective cohort study	1
Increased sputum lactate during oral glucose tolerance test in cystic fibrosis	1
SARS‐CoV‐2 infection in an advanced rheumatoid arthritis patient	1
Chondromatous metaplasia within native cardiac valves: clinicopathologic characterization with particular focus upon aortic valves	1
Toll‐like receptors 3, 7, 8, and 9 in gastric cancer	1
Cytohistological findings in HPV‐negative cases from HPV primary screening programme: quality assurance study	1
Diarrhoea‐causing microorganisms are rare in adult patients undergoing diagnostic laparoscopy for suspected appendicitis: a prospective observational cohort study	1
The expression and prognostic relevance of CDH3 in tongue squamous cell carcinoma	1
200 years of pasteurizing the world of science	1
Close monitoring and early intervention: management principles for cystic fibrosis in Denmark	1
Expression of EPHA5 in lung adenocarcinoma is associated with lymph node metastasis and EGFR mutation	1
A case of false‐positive pneumococcal urinary antigen test in a bacteremic Streptococcus agalactiae infection	1
Inter‐observer agreement of tumor infiltrating lymphocytes in primary HER2‐positive breast cancer and correlation between tissue microarray and full tumor‐sections	1
Diagnostic performance of patient self‐collected oral swab (tongue and cheek) in comparison with healthcare worker‐collected nasopharyngeal swab for severe acute respiratory syndrome coronavirus‐2 det	1
Native aortic valve Staphylococcus warneri endocarditis after COVID‐19 infection: a case report and a review of literature	1
Predicting the clinical efficacy of JAK inhibitor treatment for patients with rheumatoid arthritis based on Fas+ T cell subsets	1
Total fecal IgA levels increase and natural IgM antibodies decrease after gastric bypass surgery	1
Pre‐existing, treatment‐specific resistance‐associated substitutions in hepatitis C virus genotype 1 and 3 and viral RNA titers during treatment with direct‐acting antivirals	1
Histopathological Helsinki score of colorectal liver metastases predicts survival after liver resection	1
Fourier‐transform infrared spectroscopy imaging is a useful adjunct to routine histopathology to identify failure of polyethylene inlays in revision total hip arthroplasty	1
Gene polymorphisms of TLR10: effects on bacterial meningitis outcomes in Angolan children	1
Infectious native aortic aneurysm with negative blood cultures: do not forget the pneumococcal urinary antigen test!	1
Nursery outbreak caused by enteroaggregative Escherichia coli serogroup O111:H21	1
A porcine model of subcutaneous Staphylococcus aureus infection: a pilot study	1
Epidemics before microbiology: Stories from the plague in 1711 and cholera in 1853 in Copenhagen	1
APMIS pandemic editorial	1
Inflammatory mediators in bacterial vaginosis: The role of cytokines	1
E‐cadherin and aquaporin‐3 are downregulated in wound edges of human chronic wounds	1
Application of computer‐generated images to train pattern recognition used in semiquantitative immunohistochemistry scoring	1
Shiga toxin‐producing Escherichia coli (STEC) stool multiplex PCR can replace culture for clinical diagnosis and follow‐up	1
What the early pathologists got wrong, and right, about the pathology of Crohn’s disease: a historical perspective	1
An increase in use of antifungals for superficial infections in Denmark during 1997–2018	1
Polyphyllin I, a strong antifungal compound against Candida albicans	1
Undifferentiated–dedifferentiated endometrial carcinoma; the reappearance of an old friend with insights into the new data	1
Patients with tinea pedis and onychomycosis are more likely to use disinfectants when washing textiles than controls	1
Screening the medicine for malaria venture's Pandemic Response Box to identify novel inhibitors of Candida albicans and Candida auris biofilm formation	1
Injection site microflora in persons with diabetes: why needle reuse is not associated with increased infections?	1