APMIS

Article	Citations
The environmental occurrence of Pseudomonas aeruginosa	129
Gut microbiota in atherosclerosis: focus on trimethylamine N‐oxide	73
Bacillus Calmette–Guérin immunotherapy for bladder cancer: a review of immunological aspects, clinical effects and BCG infections	56
Epidemiology and role of Helicobacter pylori virulence factors in gastric cancer carcinogenesis	49
Electronic reporting of diagnostic laboratory test results from all healthcare sectors is a cornerstone of national preparedness and control of COVID‐19 in Denmark	46
Studies on viral pneumonia related to novel coronavirus SARS‐CoV‐2, SARS‐CoV, and MERS‐CoV: a literature review	32
Could SARS‐CoV‐2 infection affect male fertility and sexuality?	28
The human microbiome in disease and pathology	26
Merkel cell polyomavirus and non‐Merkel cell carcinomas: guilty or circumstantial evidence?	26
Bacterial signatures and their inflammatory potentials associated with prostate cancer	23
Pandemics: past, present, future	22
The inflammatory response to bone infection – a review based on animal models and human patients	21
Intraductal carcinomas of the salivary glands: systematic review and classification of 93 published cases	21
The Swedish public health response to COVID‐19	20
Endemic Burkitt lymphoma – an aggressive childhood cancer linked to Plasmodium falciparum exposure, but not to exposure to other malaria parasites	19
Human papillomavirus and urinary bladder cancer revisited	18
Prevention of nosocomial Acinetobacter baumannii infections with a conserved immunogenic fimbrial protein	14
Current and novel diagnostics for orthopedic implant biofilm infections: a review	14
Interleukin‐9‐secreting CD4+ T cells regulate CD8+ T cells cytotoxicity in patients with acute coronary syndromes	13
Prognostic role of TSPAN1, KIAA1324 and ESRP1 in prostate cancer	13
Quercetin inhibits carbapenemase and efflux pump activities among carbapenem‐resistant Gram‐negative bacteria	13
The impact of the gut microbiota on prognosis after surgery for colorectal cancer – a systematic review and meta‐analysis	12
Overview of rearing and testing conditions and a guide for optimizing Galleria mellonella breeding and use in the laboratory for scientific purposes	12
Cancer during HIV infection	12
Neuroinvasive potential of SARS‐CoV2 with neuroradiological and neuropathological findings: is the brain a target or a victim?	11

Can vancomycin lock therapy extend the retention time of infected long‐term catheters?	11
Human skin microbiota in health and disease	11
Genomic epidemiology and antimicrobial resistance determinants of Neisseria gonorrhoeae isolates from Ukraine, 2013–2018	11
The impact of mental models on the treatment and research of chronic infections due to biofilms	11
The gut microbiota can orchestrate the signaling pathways in colorectal cancer	10
Evaluation of Pseudomonas aeruginosa pathogenesis and therapeutics in military‐relevant animal infection models	10
USP7, negatively regulated by miR‐409‐5p, aggravates hypoxia‐induced cardiomyocyte injury	10
The first wide‐scale drug repurposing screen using the Prestwick Chemical Library (1200 bioactive molecules) against Neisseria gonorrhoeae identifies high in vitro activity of auranofin	10
Pathogen‐associated molecular patterns and extracellular Hsp70 interplay in NLRP3 inflammasome activation in monocytic and bronchial epithelial cellular models of COPD exacerbations	10
The COVID‐19 pandemic: key considerations for the epidemic and its control	10
The effect of calcitriol and all‐trans retinoic acid on T‐bet, IFN‐γ, GATA3 and IL‐4 genes expression in experimental autoimmune encephalomyelitis	10
Frequency and coexistence of KRAS, NRAS, BRAF and PIK3CA mutations and occurrence of MMR deficiency in Danish colorectal cancer patients	10
Accuracy of anterior nasal swab rapid antigen tests compared with RT‐PCR for massive SARS‐CoV‐2 screening in low prevalence population	9
Thyroid cancer metastasis is associated with an overabundance of defective follicular helper T cells	9
Immunotyping in tubo‐ovarian high‐grade serous carcinoma by PD‐L1 and CD8+ T‐lymphocytes predicts disease‐free survival	9
Tumour angiogenesis and c‐Met pathway activation – implications in breast cancer	9
The contribution of HERV‐E clone 4‐1 and other HERV‐E members to the pathogenesis of rheumatic autoimmune diseases	9
VGLL4 with low YAP expression is associated with favorable prognosis in colorectal cancer	9
Aquaporin‐1 in breast cancer	9
The discovery of bacterial biofilm in patients with muscle invasive bladder cancer	9
Genetic diversity and antimicrobial resistance of Staphylococcus aureus from recurrent tonsillitis in children	9
SARS‐CoV‐2 superspreading in cities vs the countryside	8
Salivary gland tumours in Iceland 1986–2015: a nationwide epidemiological analysis over a 30‐year time period	8
Comparative evaluation of CLIA and EIA for Quantiferon‐TB Gold Plus	8
Novel human in vitro vegetation simulation model for infective endocarditis	8
SARS‐CoV‐2 spike mRNA vaccine sequences circulate in blood up to 28 days after COVID‐19 vaccination	8
Biopsy quality is essential for preoperative prognostication in oral tongue cancer	8
Clinicopathologic features and prognostic factors in patients with renal cell carcinoma with sarcomatoid differentiation	7
Our current clinical understanding of Candida biofilms: where are we two decades on?	7
Transcriptomic fingerprint of bacterial infection in lower extremity ulcers	7
Aquaporin‐5 in breast cancer	7
Analyses of ABO blood groups with susceptibility and symptomatic variations of COVID‐19 infection, a questionnaire‐based survey	7
Zoonotic and reverse zoonotic transmission of viruses between humans and pigs	7
EZH2 expression is dependent on MYC and TP53 regulation in diffuse large B‐cell lymphoma	7
Prevalence of paediatric hyperinflammatory conditions in paediatric and adolescent hospitalized COVID‐19 patients: a systematic review and meta‐analysis	7
Aquaporins in pancreatic ductal adenocarcinoma	7
Regulation of the expression of human endogenous retroviruses: elements in fetal development and a possible role in the development of cancer and neurological diseases	7
Dual role of B7‐H6 as a novel prognostic marker in hepatocellular carcinoma	7
Serum metabolomic profiling reveals important difference between infants with and without subsequent recurrent wheezing in later childhood after RSV bronchiolitis	7
Canola oilseed‐ and Escherichia coli‐ derived hepatitis C virus (HCV) core proteins adjuvanted with oil bodies, induced robust Th1‐oriented immune responses in immunized mice	7
Human rhinovirus 16 induces antiviral and inflammatory response in the human vascular endothelium	6
Association of toll‐like receptor 10 polymorphisms with pediatric pneumococcal meningitis	6
The panel of syntaxin 1 and insulinoma‐associated protein 1 outperforms classic neuroendocrine markers in pulmonary neuroendocrine neoplasms	6
Automated assessment of Ki‐67 proliferation index in neuroendocrine tumors by deep learning	6
Role of IL‐22 in homeostasis and diseases of the skin	6
Toll‐like receptor 5 and 8 in hepatocellular carcinoma	6
Evaluation of analytical accuracy of HER2 status in patients with breast cancer	6
The Hammer vs Mitigation—A comparative retrospective register study of the Swedish and Danish national responses to the COVID‐19 pandemic in 2020	6
Pertussis seroprevalence among adults of reproductive age (20–39 years) in fourteen European countries	6
Reduced frequency of T helper 17 and T helper 1 cells and their association with critical coronavirus disease 2019	6

Altered gut microbiota in hepatocellular carcinoma: Insights into the pathogenic mechanism and preclinical to clinical findings	6
BUB1 predicts poor prognosis and immune status in liver hepatocellular carcinoma	5
Do mast cells contribute to the continued survival of vertebrates?	5
Diagnostics with clinical microbiome‐based identification of microorganisms in patients with brain abscesses—a prospective cohort study	5
Implant‐associated osteomyelitis: Development, characterisation, and application of a porcine model	5
Meta‐analysis of caries microbiome studies can improve upon disease prediction outcomes	5
Putative anoikis‐resistant subpopulations in colorectal carcinoma: a marker of adverse prognosis	5
Evaluation of a semi‐automated Seegene PCR workflow with MTB, MDR, and NTM detection for rapid screening of tuberculosis in a low‐prevalence setting	5
PD‐L1 immunohistochemistry: Clones, cutoffs, and controversies	5
Nuclear overexpression levels of MAGE‐A3 predict poor prognosis in patients with prostate cancer	5
The Inequality of Females in Bladder Cancer	5
Host‐microbe metatranscriptome reveals differences between acute and chronic infections in diabetes‐related foot ulcers	5
Expression and prognostic utility of SSX2IP in patients with nasopharyngeal carcinoma	5
Serum ACE as a prognostic biomarker in COVID‐19: a case series	5
IgG4‐positive plasma cells in Hashimoto thyroiditis: IgG4‐related disease or inflammation‐related IgG4‐positivity?	5
Composition and plasticity of triple‐negative breast carcinoma‐infiltrating regulatory T cells	5
Molecular characterization of human adenoviruses associated with respiratory infection in Turkey	4
Prognostic implications of the tumor immune microenvironment and immune checkpoint pathway in primary central nervous system diffuse large B‐cell lymphoma in the North Indian population	4
A possible interplay between HR‐HPV and stemness in tumor development: an in vivo investigation of CD133 as a putative marker of cancer stem cell in HPV18‐infected KB cell line	4
Dynamics of a Staphylococcus aureus infective endocarditis simulation model	4
A metatranscriptomic approach to explore longitudinal tissue specimens from non‐healing diabetes related foot ulcers	4
spoT‐mediated stringent response influences environmental and nutritional stress tolerance, biofilm formation and antimicrobial resistance in Klebsiella pneumoniae	4
Malignant peripheral nerve sheath tumors arising from schwannomas: case series and literature review	4
Two cases of tick‐borne transmitted tularemia on Southern Zealand, Denmark	4
Performance of PCR‐based syndromic testing compared to bacterial culture in patients with suspected pneumonia applying microscopy for quality assessment	4
PCSK2 expression in neuroendocrine tumors points to a midgut, pulmonary, or pheochromocytoma–paraganglioma origin	4
Hierarchical clustering of PI3K and MAPK pathway proteins in breast cancer intrinsic subtypes	4
Prognostic significance of atypical mitotic figures in smooth muscle tumors of uncertain malignant potential (STUMP) of the uterus and uterine adnexa	4
High YAP and TEAD4 immunolabelings are associated with poor prognosis in patients with gallbladder cancer	4
Animal models of chronic and recurrent Pseudomonas aeruginosa lung infection: significance of macrolide treatment	4
Acinetobacter baumannii: insights towards a comprehensive approach for the prevention of outbreaks in health‐care facilities	4
Reliability of Ki67 visual scoring app compared to eyeball estimate and digital image analysis and its prognostic significance in hormone receptor‐positive breast cancer	4
Biomarkers for iron metabolism among patients hospitalized with community‐acquired pneumonia caused by infection with SARS‐CoV‐2, bacteria, and influenza	4
Highly sensitive duplex MSI test and BAT40 germline polymorphism	4
Cranberry‐lingonberry juice affects the gut and urinary microbiome in children ‐ a randomized controlled trial	4
A Chlamydia trachomatis 23S rRNA G1523A variant escaping detection in the Aptima Combo 2 assay (Hologic) was widespread across Denmark in July–September 2019	4
Sclerosing epithelioid fibrosarcoma: in‐depth review of a genetically heterogeneous tumor	4
Weight‐based cefuroxime dosing provides comparable orthopedic target tissue concentrations between weight groups – a microdialysis porcine study	4
Potential impact of the COVID‐19 pandemic on the national and regional incidence, epidemiology and diagnostic testing of chlamydia and gonorrhoea in Sweden, 2020	4
Molecular and phenotypical investigation of ciprofloxacin resistance among Campylobacter jejuni strains of human origin: high prevalence of resistance in Turkey	4
High prevalence of pharyngeal bacterial pathogens among healthy adolescents and young adults	4
Identification of microorganisms directly from blood culture bottles with polymicrobial growth: comparison of FilmArray and direct MALDI‐TOF MS	4
Performance analysis of high‐throughput HPV testing on three automated workflows	4
Female reproductive tract microbiome and early miscarriages	3
Emergence of circulating influenza A H3N2 viruses with genetic drift in the matrix gene: be alert of false‐negative test results	3
Aspergilloma complicating previous COVID‐19 pneumonitis – a case report	3
Expression of laminin‐5 gamma 2 chain predicts invasion of extramammary Paget’s disease cell	3
Dynamics of skin microbiota in shoulder surgery infections	3
The role of Pap smear in the diagnostics of endocervical adenocarcinoma	3
Clinicopathological and molecular characteristics of the alpha‐fetoprotein–producing gastric cancer: emphasis on two major subtypes	3
Distinct contribution of hyperbaric oxygen therapy to human neutrophil function and antibiotic efficacy against Staphylococcus aureus	3
Silencing KLF16 inhibits oral squamous cell carcinoma cell proliferation by arresting the cell cycle and inducing apoptosis	3
Effectiveness of fluconazole as antifungal prophylaxis in cancer patients undergoing chemotherapy, radiotherapy, or immunotherapy: systematic review and meta‐analysis	3
Tourniquet‐induced ischemia and reperfusion in subcutaneous tissue, skeletal muscle, and calcaneal cancellous bone	3
Vitamin A deficiency in K14E7HPV expressing transgenic mice facilitates the formation of malignant cervical lesions	3
Formulation of a recombinant HIV‐1 polytope candidate vaccine with naloxone/alum mixture: induction of multi‐cytokine responses with a higher regulatory mechanism	3
Screening the Tocriscreen™ bioactive compound library in search for inhibitors of Candida biofilm formation	3
Stanford parameters stratify the risk of recurrence in gynecologic smooth muscle tumors of uncertain malignant potential	3
Exome sequencing of 22 genes using tissue from patients with biliary tract cancer	3
Human lung vascular endothelium may limit viral replication and recover in time upon the infection with rhinovirus HRV16	3
Infection and the role in cancer development	3
Eradication of biofilms on tympanostomy tubes with acetic acid treatment: an in vitro study	3
A simple, safe and sensitive method for SARS‐CoV‐2 inactivation and RNA extraction for RT‐qPCR	3
Dishevelled family proteins in serous ovarian carcinomas: a clinicopathologic and molecular study	3
Can a gluten‐free diet be partly protective for COVID‐19 infection?	3
Historical and contemporary views on cholera transmission: are we repeating past discussions? Can lessons learned from cholera be applied to COVID‐19?	3
Extensive microbiological respiratory tract specimen characterization in critically ill COVID‐19 patients	3
Early IL‐2 treatment of mice with Pseudomonas aeruginosa pneumonia induced PMN‐dominating response and reduced lung pathology	2
Molecular epidemiology of community‐ and hospital‐associated Clostridioides difficile infections in Jönköping, Sweden, October 2017 – March 2018	2
Analysis of the correlation between P27 expression and Helicobacter pylori infection in gastric cancer	2
Comparison of growth and morphology of Borrelia burgdorferi sensu lato in BSK‐H and BSK‐II media stored for prolonged periods	2
Autopsies in pandemics – a perspective on barriers and benefits. Is it time for a revival?	2
Spindle cell tumors of the pleura and the peritoneum: pathologic diagnosis and updates	2
Expression of TRIM22 mRNA in chronic hepatitis C patients treated with direct‐acting antiviral drugs	2
Vaginal microbiome following orally administered probiotic	2
The expression and prognostic relevance of programmed cell death protein 1 in tongue squamous cell carcinoma	2
A unique case of Fusobacterium nucleatum spondylodiscitis communicating with a pleural empyema through a fistula	2
Louis Pasteur and the birth of microbiology in Denmark	2
A novel fully human recombinant antibody neutralizing α‐hemolysin of Staphylococcus aureus	2
Characterization of a lytic EBP bacteriophage with large size genome against Enterobacter cloacae	2

Minimal residual disease monitoring cannot fully replace bone marrow morphology in assessing disease status in pediatric acute lymphoblastic leukemia	2
Vancomycin‐resistant Enterococcus faecium: should we screen on admission?	2
Subtyping of male breast cancer by PAM50 and immunohistochemistry: a pilot study of a consecutive Danish cohort	2
The role of infectious agents in cancer of the ocular region	2
Location of OprD porin in Pseudomonas aeruginosa clinical isolates	2
Circulating miR‐15b, miR‐34a and miR‐218 as promising novel early low‐invasive biomarkers of cervical carcinogenesis	2
Epidemiology of bacteria and viruses in the respiratory tract of humans and domestic pigs	2
Diagnostic utility of the combined use of HNF4A and GATA3 in distinction between primary and metastatic breast and gastric carcinomas	2
Cytokeratin 13 (CK13) expression in cancer: a tissue microarray study on 10,439 tumors	2
Systematic review on the current knowledge and use of single‐cell RNA sequencing in head and neck cancer	2
Mycoplasma genitalium prevalence and macrolide resistance‐associated mutations and coinfection with Chlamydia trachomatis in Southern Jutland, Denmark	2
PD‐L1 and PD‐1 expression in thyroid follicular epithelial dysplasia: Hashimoto thyroiditis related atypia and potential papillary carcinoma precursor	2
Opportunistic non‐communicable diseases in times of COVID‐19	2
Azole resistance in Candida auris: mechanisms and combinatorial therapy	2
The use of core genome multilocus sequence typing to determine the duration of vancomycin‐resistant Enterococcus faecium outbreaks	2
Pentraxin‐3 detected in human saliva shows limited correlation with biomarkers associated with systemic inflammation	2
The potential importance of autophagy genes expression profile dysregulation and ATG polymorphisms in COVID‐19 pathogenesis	2
Detection methods targeting the positive‐ and negative‐sense RNA transcripts from plus‐stranded RNA viruses	2
HIV‐associated infective native aortic aneurysms	2
Disturbance in the oropharyngeal microbiota in relation to antibiotic and proton pump inhibitor medication and length of hospital stay	2
Tertiary lymphoid structures and gastric cancer prognosis	2
Protein O‐mannosyltransferase Rv1002c contributes to low cell permeability, biofilm formation in vitro, and mycobacterial survival in mice	2
Aneurysmal bone cyst and osteoblastoma after neoadjuvant denosumab: histologic spectrum and potential diagnostic pitfalls	2
Oral symptoms and pathologies in Danish patients with chronic kidney disease‐ a pilot study	2
Study of humoral and cellular immunity in vaccinated with mRNA‐1273	2
PD‐L1 expression and FGFR‐mutations among Danish patients diagnosed with metastatic urothelial carcinoma: A retrospective and descriptive study	2
A porcine model of subcutaneous Staphylococcus aureus infection: a pilot study	1
Endotracheal lactate reflects lower respiratory tract infections and inflammation in intubated patients	1
Evaluation of a polymyxin drop test for polymyxin resistance detection among non‐fermentative gram‐negative rods and enterobacterales resistant to carbapenems	1
Single cells and bacterial biofilm populations in chronic wound infections	1
Reduced phosphatidylcholine level in the intestinal mucus layer of prediabetic NOD mice	1
Microbial risk factors for treatment failure of pivmecillinam in community‐acquired urinary tract infections caused by ESBL‐producing Escherichia coli	1
Mapping bacterial biofilm on explanted orthopedic hardware: An analysis of 14 consecutive cases	1
What the early pathologists got wrong, and right, about the pathology of Crohn’s disease: a historical perspective	1
An increase in use of antifungals for superficial infections in Denmark during 1997–2018	1
Primary skin abscess microbiota a systematic review	1
Inter‐observer agreement of tumor infiltrating lymphocytes in primary HER2‐positive breast cancer and correlation between tissue microarray and full tumor‐sections	1
Pre‐existing, treatment‐specific resistance‐associated substitutions in hepatitis C virus genotype 1 and 3 and viral RNA titers during treatment with direct‐acting antivirals	1
Undifferentiated–dedifferentiated endometrial carcinoma; the reappearance of an old friend with insights into the new data	1
Mucosal microbiotas and their role in stem cell transplantation	1
Bacterial invasion of the submicron osteocyte lacuna–canaliculi network (OLCN): a part of osteomyelitis disease biology	1
Genomic characterization of beta‐haemolytic streptococci isolated from prosthetic joint infections	1
Elevated expression of the AIM2 gene in response to Helicobacter pylori along with the decrease of NLRC4 inflammasome is associated with peptic ulcer development	1
Antisecretory factor AF‐16 improves vascular access to a rat mammary tumour	1
APMIS pandemic editorial	1
Mutation of KRAS in colorectal adenocarcinoma in Greenland	1
The expression and prognostic relevance of CDH3 in tongue squamous cell carcinoma	1
200 years of pasteurizing the world of science	1
Murine burn lesion model for studying acute and chronic wound infections	1
Evaluation of the Xpert MTB/RIF test accuracy for diagnosis of tuberculosis in areas with a moderate tuberculosis burden	1
Invasive pulmonary aspergillosis in the intensive care unit: current challenges and best practices	1
A heptadeca amino acid peptide subunit of cathelicidin LL‐37 has previously unreported antifungal activity	1
Beta‐hemolytic streptococci A, C, and G are susceptible to cloxacillin	1
Immunohistochemical somatostatin receptor expression in insulinomas	1
Preoperative BRAFV600E mutation detection in thyroid carcinoma by immunocytochemistry	1
Injection site microflora in persons with diabetes: why needle reuse is not associated with increased infections?	1
Limitations of using 16S rRNA microbiome sequencing to predict oral squamous cell carcinoma	1
Association of Toll‐like receptor 2 rs111200466 polymorphism with low serum levels of IL‐33 in early childhood	1
SARS‐CoV‐2 infection in an advanced rheumatoid arthritis patient	1
Screening the medicine for malaria venture's Pandemic Response Box to identify novel inhibitors of Candida albicans and Candida auris biofilm formation	1
Toll‐like receptors 3, 7, 8, and 9 in gastric cancer	1
On the history of human coronaviruses	1
Cytohistological findings in HPV‐negative cases from HPV primary screening programme: quality assurance study	1
Association of sickle cell trait with β‐cell dysfunction and physical activity in adults living with and without HIV in Tanzania	1
Whole genome sequencing reveals two genetically distinct MRSA outbreaks among people who inject drugs and homeless people in Copenhagen	1
Nephrotic syndrome and pulmonary hypertension as complications of intravenous drug abuse	1
Blocking coprophagy increases the levels of inflammation and depression in healthy mice as well as mice receiving fecal microbiota transplantation from disease model mice donors	1
A case of false‐positive pneumococcal urinary antigen test in a bacteremic Streptococcus agalactiae infection	1
Characterization of in vitro 3D cultures	1
Comparative evaluation of chemiluminescent immunoassay and enzyme‐linked immunosorbent assays for the diagnosis of West Nile virus infections	1
Programmed cell death protein 1 (PD‐1) in infection	1
Short communication: dog bite and back pain	1
Native aortic valve Staphylococcus warneri endocarditis after COVID‐19 infection: a case report and a review of literature	1
Is increased Staphylococcus aureus colonization during military service caused by specific genotypes? Molecular examination of long‐term carriage in a prospective cohort study	1
Intestinal metaplasia is a precursor lesion for sinonasal intestinal‐type adenocarcinoma: genomic investigation of a case proving this hypothesis	1
Escherichia coli lipopolysaccharide may affect the endothelial barrier and IL‐10 expression of apolipoprotein B100‐pulsed dendritic cells	1
BRAF mutation, TERT promoter mutation, and HER2 amplification in sporadic or neurofibromatosis‐related neurofibromas and malignant peripheral nerve sheath tumors: do these molecules have a signature i	1
Associations between invasive aspergillosis and cytomegalovirus in lung transplant recipients: a nationwide cohort study	1