APMIS

Article	Citations
Gut microbiota in atherosclerosis: focus on trimethylamine N‐oxide	85
Electronic reporting of diagnostic laboratory test results from all healthcare sectors is a cornerstone of national preparedness and control of COVID‐19 in Denmark	51
The human microbiome in disease and pathology	35
Studies on viral pneumonia related to novel coronavirus SARS‐CoV‐2, SARS‐CoV, and MERS‐CoV: a literature review	32
Could SARS‐CoV‐2 infection affect male fertility and sexuality?	31
Pandemics: past, present, future	22
The Swedish public health response to COVID‐19	21
Current and novel diagnostics for orthopedic implant biofilm infections: a review	17
Prevention of nosocomial Acinetobacter baumannii infections with a conserved immunogenic fimbrial protein	15
Prognostic role of TSPAN1, KIAA1324 and ESRP1 in prostate cancer	15
SARS‐CoV‐2 spike mRNA vaccine sequences circulate in blood up to 28 days after COVID‐19 vaccination	14
Human skin microbiota in health and disease	14
Interleukin‐9‐secreting CD4+ T cells regulate CD8+ T cells cytotoxicity in patients with acute coronary syndromes	14
Evaluation of Pseudomonas aeruginosa pathogenesis and therapeutics in military‐relevant animal infection models	14
Pathogen‐associated molecular patterns and extracellular Hsp70 interplay in NLRP3 inflammasome activation in monocytic and bronchial epithelial cellular models of COPD exacerbations	12
Overview of rearing and testing conditions and a guide for optimizing Galleria mellonella breeding and use in the laboratory for scientific purposes	12
Neuroinvasive potential of SARS‐CoV2 with neuroradiological and neuropathological findings: is the brain a target or a victim?	12
The gut microbiota can orchestrate the signaling pathways in colorectal cancer	12
Genomic epidemiology and antimicrobial resistance determinants of Neisseria gonorrhoeae isolates from Ukraine, 2013–2018	12
USP7, negatively regulated by miR‐409‐5p, aggravates hypoxia‐induced cardiomyocyte injury	12
Thyroid cancer metastasis is associated with an overabundance of defective follicular helper T cells	11
Can vancomycin lock therapy extend the retention time of infected long‐term catheters?	11
The effect of calcitriol and all‐trans retinoic acid on T‐bet, IFN‐γ, GATA3 and IL‐4 genes expression in experimental autoimmune encephalomyelitis	11
The impact of mental models on the treatment and research of chronic infections due to biofilms	11
Frequency and coexistence of KRAS, NRAS, BRAF and PIK3CA mutations and occurrence of MMR deficiency in Danish colorectal cancer patients	10

Immunotyping in tubo‐ovarian high‐grade serous carcinoma by PD‐L1 and CD8+ T‐lymphocytes predicts disease‐free survival	10
The COVID‐19 pandemic: key considerations for the epidemic and its control	10
Aquaporin‐1 in breast cancer	10
The discovery of bacterial biofilm in patients with muscle invasive bladder cancer	10
The contribution of HERV‐E clone 4‐1 and other HERV‐E members to the pathogenesis of rheumatic autoimmune diseases	9
SARS‐CoV‐2 superspreading in cities vs the countryside	9
VGLL4 with low YAP expression is associated with favorable prognosis in colorectal cancer	9
Role of IL‐22 in homeostasis and diseases of the skin	9
Accuracy of anterior nasal swab rapid antigen tests compared with RT‐PCR for massive SARS‐CoV‐2 screening in low prevalence population	9
Our current clinical understanding of Candida biofilms: where are we two decades on?	9
Comparative evaluation of CLIA and EIA for Quantiferon‐TB Gold Plus	8
Automated assessment of Ki‐67 proliferation index in neuroendocrine tumors by deep learning	8
Biopsy quality is essential for preoperative prognostication in oral tongue cancer	8
Novel human in vitro vegetation simulation model for infective endocarditis	8
Analyses of ABO blood groups with susceptibility and symptomatic variations of COVID‐19 infection, a questionnaire‐based survey	8
Regulation of the expression of human endogenous retroviruses: elements in fetal development and a possible role in the development of cancer and neurological diseases	8
Evaluation of analytical accuracy of HER2 status in patients with breast cancer	8
Salivary gland tumours in Iceland 1986–2015: a nationwide epidemiological analysis over a 30‐year time period	8
Clinicopathologic features and prognostic factors in patients with renal cell carcinoma with sarcomatoid differentiation	7
Transcriptomic fingerprint of bacterial infection in lower extremity ulcers	7
PD‐L1 immunohistochemistry: Clones, cutoffs, and controversies	7
IgG4‐positive plasma cells in Hashimoto thyroiditis: IgG4‐related disease or inflammation‐related IgG4‐positivity?	7
The Hammer vs Mitigation—A comparative retrospective register study of the Swedish and Danish national responses to the COVID‐19 pandemic in 2020	7
Zoonotic and reverse zoonotic transmission of viruses between humans and pigs	7
Dual role of B7‐H6 as a novel prognostic marker in hepatocellular carcinoma	7
Serum metabolomic profiling reveals important difference between infants with and without subsequent recurrent wheezing in later childhood after RSV bronchiolitis	7
Aquaporins in pancreatic ductal adenocarcinoma	7
Canola oilseed‐ and Escherichia coli‐ derived hepatitis C virus (HCV) core proteins adjuvanted with oil bodies, induced robust Th1‐oriented immune responses in immunized mice	7
The Inequality of Females in Bladder Cancer	7
Toll‐like receptor 5 and 8 in hepatocellular carcinoma	7
Prevalence of paediatric hyperinflammatory conditions in paediatric and adolescent hospitalized COVID‐19 patients: a systematic review and meta‐analysis	7
Aquaporin‐5 in breast cancer	7
Sclerosing epithelioid fibrosarcoma: in‐depth review of a genetically heterogeneous tumor	7
Diagnostics with clinical microbiome‐based identification of microorganisms in patients with brain abscesses—a prospective cohort study	6
Nuclear overexpression levels of MAGE‐A3 predict poor prognosis in patients with prostate cancer	6
Human rhinovirus 16 induces antiviral and inflammatory response in the human vascular endothelium	6
Pertussis seroprevalence among adults of reproductive age (20–39 years) in fourteen European countries	6
Evaluation of a semi‐automated Seegene PCR workflow with MTB, MDR, and NTM detection for rapid screening of tuberculosis in a low‐prevalence setting	6
The panel of syntaxin 1 and insulinoma‐associated protein 1 outperforms classic neuroendocrine markers in pulmonary neuroendocrine neoplasms	6
Potential impact of the COVID‐19 pandemic on the national and regional incidence, epidemiology and diagnostic testing of chlamydia and gonorrhoea in Sweden, 2020	6
Meta‐analysis of caries microbiome studies can improve upon disease prediction outcomes	6
Host‐microbe metatranscriptome reveals differences between acute and chronic infections in diabetes‐related foot ulcers	6
Tertiary lymphoid structures and gastric cancer prognosis	6
Altered gut microbiota in hepatocellular carcinoma: Insights into the pathogenic mechanism and preclinical to clinical findings	6
BUB1 predicts poor prognosis and immune status in liver hepatocellular carcinoma	6
Reduced frequency of T helper 17 and T helper 1 cells and their association with critical coronavirus disease 2019	6
Female reproductive tract microbiome and early miscarriages	5
Reliability of Ki67 visual scoring app compared to eyeball estimate and digital image analysis and its prognostic significance in hormone receptor‐positive breast cancer	5
Do mast cells contribute to the continued survival of vertebrates?	5
Prognostic significance of atypical mitotic figures in smooth muscle tumors of uncertain malignant potential (STUMP) of the uterus and uterine adnexa	5

Implant‐associated osteomyelitis: Development, characterisation, and application of a porcine model	5
High prevalence of pharyngeal bacterial pathogens among healthy adolescents and young adults	5
Putative anoikis‐resistant subpopulations in colorectal carcinoma: a marker of adverse prognosis	5
A possible interplay between HR‐HPV and stemness in tumor development: an in vivo investigation of CD133 as a putative marker of cancer stem cell in HPV18‐infected KB cell line	5
Prognostic implications of the tumor immune microenvironment and immune checkpoint pathway in primary central nervous system diffuse large B‐cell lymphoma in the North Indian population	5
Acinetobacter baumannii: insights towards a comprehensive approach for the prevention of outbreaks in health‐care facilities	5
Identification of microorganisms directly from blood culture bottles with polymicrobial growth: comparison of FilmArray and direct MALDI‐TOF MS	5
Detection methods targeting the positive‐ and negative‐sense RNA transcripts from plus‐stranded RNA viruses	5
A Chlamydia trachomatis 23S rRNA G1523A variant escaping detection in the Aptima Combo 2 assay (Hologic) was widespread across Denmark in July–September 2019	5
Serum ACE as a prognostic biomarker in COVID‐19: a case series	5
Weight‐based cefuroxime dosing provides comparable orthopedic target tissue concentrations between weight groups – a microdialysis porcine study	5
Malignant peripheral nerve sheath tumors arising from schwannomas: case series and literature review	4
Performance of PCR‐based syndromic testing compared to bacterial culture in patients with suspected pneumonia applying microscopy for quality assessment	4
Biomarkers for iron metabolism among patients hospitalized with community‐acquired pneumonia caused by infection with SARS‐CoV‐2, bacteria, and influenza	4
Highly sensitive duplex MSI test and BAT40 germline polymorphism	4
Cranberry‐lingonberry juice affects the gut and urinary microbiome in children ‐ a randomized controlled trial	4
Dynamics of a Staphylococcus aureus infective endocarditis simulation model	4
Animal models of chronic and recurrent Pseudomonas aeruginosa lung infection: significance of macrolide treatment	4
Limitations of using 16S rRNA microbiome sequencing to predict oral squamous cell carcinoma	4
A metatranscriptomic approach to explore longitudinal tissue specimens from non‐healing diabetes related foot ulcers	4
Expression of laminin‐5 gamma 2 chain predicts invasion of extramammary Paget’s disease cell	4
Performance analysis of high‐throughput HPV testing on three automated workflows	4
Molecular characterization of human adenoviruses associated with respiratory infection in Turkey	4
Historical and contemporary views on cholera transmission: are we repeating past discussions? Can lessons learned from cholera be applied to COVID‐19?	4
Extensive microbiological respiratory tract specimen characterization in critically ill COVID‐19 patients	4
The use of core genome multilocus sequence typing to determine the duration of vancomycin‐resistant Enterococcus faecium outbreaks	4
Tourniquet‐induced ischemia and reperfusion in subcutaneous tissue, skeletal muscle, and calcaneal cancellous bone	4
Distinct contribution of hyperbaric oxygen therapy to human neutrophil function and antibiotic efficacy against Staphylococcus aureus	4
PCSK2 expression in neuroendocrine tumors points to a midgut, pulmonary, or pheochromocytoma–paraganglioma origin	4
Autopsies in pandemics – a perspective on barriers and benefits. Is it time for a revival?	4
The role of Pap smear in the diagnostics of endocervical adenocarcinoma	4
Clinicopathological and molecular characteristics of the alpha‐fetoprotein–producing gastric cancer: emphasis on two major subtypes	4
High YAP and TEAD4 immunolabelings are associated with poor prognosis in patients with gallbladder cancer	4
Screening the Tocriscreen™ bioactive compound library in search for inhibitors of Candida biofilm formation	3
Stanford parameters stratify the risk of recurrence in gynecologic smooth muscle tumors of uncertain malignant potential	3
Silencing KLF16 inhibits oral squamous cell carcinoma cell proliferation by arresting the cell cycle and inducing apoptosis	3
Subtyping of male breast cancer by PAM50 and immunohistochemistry: a pilot study of a consecutive Danish cohort	3
Effectiveness of fluconazole as antifungal prophylaxis in cancer patients undergoing chemotherapy, radiotherapy, or immunotherapy: systematic review and meta‐analysis	3
Vitamin A deficiency in K14E7HPV expressing transgenic mice facilitates the formation of malignant cervical lesions	3
Formulation of a recombinant HIV‐1 polytope candidate vaccine with naloxone/alum mixture: induction of multi‐cytokine responses with a higher regulatory mechanism	3
A unique case of Fusobacterium nucleatum spondylodiscitis communicating with a pleural empyema through a fistula	3
A novel fully human recombinant antibody neutralizing α‐hemolysin of Staphylococcus aureus	3
Azole resistance in Candida auris: mechanisms and combinatorial therapy	3
Human lung vascular endothelium may limit viral replication and recover in time upon the infection with rhinovirus HRV16	3
Aspergilloma complicating previous COVID‐19 pneumonitis – a case report	3
Eradication of biofilms on tympanostomy tubes with acetic acid treatment: an in vitro study	3
A simple, safe and sensitive method for SARS‐CoV‐2 inactivation and RNA extraction for RT‐qPCR	3
Can a gluten‐free diet be partly protective for COVID‐19 infection?	3
Cytokeratin 13 (CK13) expression in cancer: a tissue microarray study on 10,439 tumors	3
Molecular epidemiology of community‐ and hospital‐associated Clostridioides difficile infections in Jönköping, Sweden, October 2017 – March 2018	3
Emergence of circulating influenza A H3N2 viruses with genetic drift in the matrix gene: be alert of false‐negative test results	3
Vancomycin‐resistant Enterococcus faecium: should we screen on admission?	3
Opportunistic non‐communicable diseases in times of COVID‐19	3
Dynamics of skin microbiota in shoulder surgery infections	3
Clinical aspects of histological and hormonal parameters in boys with cryptorchidism	2
Immunohistochemical somatostatin receptor expression in insulinomas	2
Aneurysmal bone cyst and osteoblastoma after neoadjuvant denosumab: histologic spectrum and potential diagnostic pitfalls	2
Gastrointestinal dysbiosis and Escherichia coli pathobionts in inflammatory bowel diseases	2
Bacterial invasion of the submicron osteocyte lacuna–canaliculi network (OLCN): a part of osteomyelitis disease biology	2
Study of humoral and cellular immunity in vaccinated with mRNA‐1273	2
Elevated expression of the AIM2 gene in response to Helicobacter pylori along with the decrease of NLRC4 inflammasome is associated with peptic ulcer development	2
Characterization of a lytic EBP bacteriophage with large size genome against Enterobacter cloacae	2
Oral symptoms and pathologies in Danish patients with chronic kidney disease‐ a pilot study	2
Evaluation of a polymyxin drop test for polymyxin resistance detection among non‐fermentative gram‐negative rods and enterobacterales resistant to carbapenems	2
Spindle cell tumors of the pleura and the peritoneum: pathologic diagnosis and updates	2
Nephrotic syndrome and pulmonary hypertension as complications of intravenous drug abuse	2
Comparative evaluation of chemiluminescent immunoassay and enzyme‐linked immunosorbent assays for the diagnosis of West Nile virus infections	2
Reduced phosphatidylcholine level in the intestinal mucus layer of prediabetic NOD mice	2
Louis Pasteur and the birth of microbiology in Denmark	2
Protein O‐mannosyltransferase Rv1002c contributes to low cell permeability, biofilm formation in vitro, and mycobacterial survival in mice	2
Characterization of in vitro 3D cultures	2
Diagnostic utility of the combined use of HNF4A and GATA3 in distinction between primary and metastatic breast and gastric carcinomas	2
Invasive pulmonary aspergillosis in the intensive care unit: current challenges and best practices	2
Intestinal metaplasia is a precursor lesion for sinonasal intestinal‐type adenocarcinoma: genomic investigation of a case proving this hypothesis	2
Comparison of growth and morphology of Borrelia burgdorferi sensu lato in BSK‐H and BSK‐II media stored for prolonged periods	2
PD‐L1 and PD‐1 expression in thyroid follicular epithelial dysplasia: Hashimoto thyroiditis related atypia and potential papillary carcinoma precursor	2
Early IL‐2 treatment of mice with Pseudomonas aeruginosa pneumonia induced PMN‐dominating response and reduced lung pathology	2
HIV‐associated infective native aortic aneurysms	2
Circulating miR‐15b, miR‐34a and miR‐218 as promising novel early low‐invasive biomarkers of cervical carcinogenesis	2
Multiplex immunofluorescence staining of coverslip‐mounted paraffin‐embedded tissue sections	2

Epidemiology of bacteria and viruses in the respiratory tract of humans and domestic pigs	2
Vaginal microbiome following orally administered probiotic	2
The expression and prognostic relevance of programmed cell death protein 1 in tongue squamous cell carcinoma	2
Systematic review on the current knowledge and use of single‐cell RNA sequencing in head and neck cancer	2
Preoperative BRAFV600E mutation detection in thyroid carcinoma by immunocytochemistry	2
Mycoplasma genitalium prevalence and macrolide resistance‐associated mutations and coinfection with Chlamydia trachomatis in Southern Jutland, Denmark	2
Pentraxin‐3 detected in human saliva shows limited correlation with biomarkers associated with systemic inflammation	2
PD‐L1 expression and FGFR‐mutations among Danish patients diagnosed with metastatic urothelial carcinoma: A retrospective and descriptive study	2
On the history of human coronaviruses	2
Minimal residual disease monitoring cannot fully replace bone marrow morphology in assessing disease status in pediatric acute lymphoblastic leukemia	2
Analysis of the correlation between P27 expression and Helicobacter pylori infection in gastric cancer	2
Location of OprD porin in Pseudomonas aeruginosa clinical isolates	2
The potential importance of autophagy genes expression profile dysregulation and ATG polymorphisms in COVID‐19 pathogenesis	2
Primary skin abscess microbiota a systematic review	2
Disturbance in the oropharyngeal microbiota in relation to antibiotic and proton pump inhibitor medication and length of hospital stay	2
Inter‐observer agreement of tumor infiltrating lymphocytes in primary HER2‐positive breast cancer and correlation between tissue microarray and full tumor‐sections	1
Antizyme inhibitor 2 (AZIN2) associates with better prognosis of head and neck minor salivary gland adenoid cystic carcinoma	1
SARS‐CoV‐2 infection in an advanced rheumatoid arthritis patient	1
Screening the medicine for malaria venture's Pandemic Response Box to identify novel inhibitors of Candida albicans and Candida auris biofilm formation	1
BRAF mutation, TERT promoter mutation, and HER2 amplification in sporadic or neurofibromatosis‐related neurofibromas and malignant peripheral nerve sheath tumors: do these molecules have a signature i	1
Undifferentiated–dedifferentiated endometrial carcinoma; the reappearance of an old friend with insights into the new data	1
Endotracheal lactate reflects lower respiratory tract infections and inflammation in intubated patients	1
Immunohistochemical detection of double‐stranded RNA in formalin‐fixed paraffin‐embedded tissue	1
The expression and prognostic relevance of CDH3 in tongue squamous cell carcinoma	1
Single cells and bacterial biofilm populations in chronic wound infections	1
Murine burn lesion model for studying acute and chronic wound infections	1
A case of false‐positive pneumococcal urinary antigen test in a bacteremic Streptococcus agalactiae infection	1
Ectopic thyroid in EBUS: experience from a quality assurance programme	1
Pre‐existing, treatment‐specific resistance‐associated substitutions in hepatitis C virus genotype 1 and 3 and viral RNA titers during treatment with direct‐acting antivirals	1
An increase in use of antifungals for superficial infections in Denmark during 1997–2018	1
Mucosal microbiotas and their role in stem cell transplantation	1
Native aortic valve Staphylococcus warneri endocarditis after COVID‐19 infection: a case report and a review of literature	1
Toll‐like receptors 3, 7, 8, and 9 in gastric cancer	1
Infectious native aortic aneurysm with negative blood cultures: do not forget the pneumococcal urinary antigen test!	1
Associations between invasive aspergillosis and cytomegalovirus in lung transplant recipients: a nationwide cohort study	1
Genomic characterization of beta‐haemolytic streptococci isolated from prosthetic joint infections	1
Mutation of KRAS in colorectal adenocarcinoma in Greenland	1
Cytohistological findings in HPV‐negative cases from HPV primary screening programme: quality assurance study	1
Association of sickle cell trait with β‐cell dysfunction and physical activity in adults living with and without HIV in Tanzania	1
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A heptadeca amino acid peptide subunit of cathelicidin LL‐37 has previously unreported antifungal activity	1
What the early pathologists got wrong, and right, about the pathology of Crohn’s disease: a historical perspective	1
Blocking coprophagy increases the levels of inflammation and depression in healthy mice as well as mice receiving fecal microbiota transplantation from disease model mice donors	1
Injection site microflora in persons with diabetes: why needle reuse is not associated with increased infections?	1
Beta‐hemolytic streptococci A, C, and G are susceptible to cloxacillin	1
Association of Toll‐like receptor 2 rs111200466 polymorphism with low serum levels of IL‐33 in early childhood	1
APMIS pandemic editorial	1
Total fecal IgA levels increase and natural IgM antibodies decrease after gastric bypass surgery	1
A porcine model of subcutaneous Staphylococcus aureus infection: a pilot study	1
Antisecretory factor AF‐16 improves vascular access to a rat mammary tumour	1
Gene polymorphisms of TLR10: effects on bacterial meningitis outcomes in Angolan children	1
Chondromatous metaplasia within native cardiac valves: clinicopathologic characterization with particular focus upon aortic valves	1
New contributions on chronic low back pain: disc infection or contaminated cultures?	1
200 years of pasteurizing the world of science	1
Whole genome sequencing reveals two genetically distinct MRSA outbreaks among people who inject drugs and homeless people in Copenhagen	1
Evaluation of the Xpert MTB/RIF test accuracy for diagnosis of tuberculosis in areas with a moderate tuberculosis burden	1
Short communication: dog bite and back pain	1
Mapping bacterial biofilm on explanted orthopedic hardware: An analysis of 14 consecutive cases	1
Is increased Staphylococcus aureus colonization during military service caused by specific genotypes? Molecular examination of long‐term carriage in a prospective cohort study	1