APMIS

Papers
(The median citation count of APMIS is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-06-01 to 2024-06-01.)
ArticleCitations
Electronic reporting of diagnostic laboratory test results from all healthcare sectors is a cornerstone of national preparedness and control of COVID‐19 in Denmark55
The human microbiome in disease and pathology47
Studies on viral pneumonia related to novel coronavirus SARS‐CoV‐2, SARS‐CoV, and MERS‐CoV: a literature review33
Could SARS‐CoV‐2 infection affect male fertility and sexuality?32
The Swedish public health response to COVID‐1925
Pandemics: past, present, future25
Current and novel diagnostics for orthopedic implant biofilm infections: a review18
Human skin microbiota in health and disease17
SARS‐CoV‐2 spike mRNA vaccine sequences circulate in blood up to 28 days after COVID‐19 vaccination17
Role of IL‐22 in homeostasis and diseases of the skin16
Prognostic role of TSPAN1, KIAA1324 and ESRP1 in prostate cancer16
Pathogen‐associated molecular patterns and extracellular Hsp70 interplay in NLRP3 inflammasome activation in monocytic and bronchial epithelial cellular models of COPD exacerbations16
USP7, negatively regulated by miR‐409‐5p, aggravates hypoxia‐induced cardiomyocyte injury15
The gut microbiota can orchestrate the signaling pathways in colorectal cancer15
Prevention of nosocomial Acinetobacter baumannii infections with a conserved immunogenic fimbrial protein15
Evaluation of Pseudomonas aeruginosa pathogenesis and therapeutics in military‐relevant animal infection models15
Interleukin‐9‐secreting CD4+ T cells regulate CD8+ T cells cytotoxicity in patients with acute coronary syndromes14
Salivary gland tumours in Iceland 1986–2015: a nationwide epidemiological analysis over a 30‐year time period14
Genomic epidemiology and antimicrobial resistance determinants of Neisseria gonorrhoeae isolates from Ukraine, 2013–201813
Neuroinvasive potential of SARS‐CoV2 with neuroradiological and neuropathological findings: is the brain a target or a victim?13
Overview of rearing and testing conditions and a guide for optimizing Galleria mellonella breeding and use in the laboratory for scientific purposes13
Aquaporin‐1 in breast cancer12
The discovery of bacterial biofilm in patients with muscle invasive bladder cancer12
The effect of calcitriol and all‐trans retinoic acid on T‐bet, IFN‐γ, GATA3 and IL‐4 genes expression in experimental autoimmune encephalomyelitis12
The COVID‐19 pandemic: key considerations for the epidemic and its control11
Thyroid cancer metastasis is associated with an overabundance of defective follicular helper T cells11
PD‐L1 immunohistochemistry: Clones, cutoffs, and controversies11
VGLL4 with low YAP expression is associated with favorable prognosis in colorectal cancer11
Toll‐like receptor 5 and 8 in hepatocellular carcinoma11
The impact of mental models on the treatment and research of chronic infections due to biofilms11
Immunotyping in tubo‐ovarian high‐grade serous carcinoma by PD‐L1 and CD8+ T‐lymphocytes predicts disease‐free survival11
SARS‐CoV‐2 superspreading in cities vs the countryside10
Frequency and coexistence of KRAS, NRAS, BRAF and PIK3CA mutations and occurrence of MMR deficiency in Danish colorectal cancer patients10
Meta‐analysis of caries microbiome studies can improve upon disease prediction outcomes10
Prevalence of paediatric hyperinflammatory conditions in paediatric and adolescent hospitalized COVID‐19 patients: a systematic review and meta‐analysis9
Aquaporin‐5 in breast cancer9
Pertussis seroprevalence among adults of reproductive age (20–39 years) in fourteen European countries9
Novel human in vitro vegetation simulation model for infective endocarditis9
Our current clinical understanding of Candida biofilms: where are we two decades on?9
Accuracy of anterior nasal swab rapid antigen tests compared with RT‐PCR for massive SARS‐CoV‐2 screening in low prevalence population9
The Inequality of Females in Bladder Cancer8
Transcriptomic fingerprint of bacterial infection in lower extremity ulcers8
Biopsy quality is essential for preoperative prognostication in oral tongue cancer8
Automated assessment of Ki‐67 proliferation index in neuroendocrine tumors by deep learning8
Zoonotic and reverse zoonotic transmission of viruses between humans and pigs8
Serum metabolomic profiling reveals important difference between infants with and without subsequent recurrent wheezing in later childhood after RSV bronchiolitis8
The Hammer vs Mitigation—A comparative retrospective register study of the Swedish and Danish national responses to the COVID‐19 pandemic in 20208
Regulation of the expression of human endogenous retroviruses: elements in fetal development and a possible role in the development of cancer and neurological diseases8
Evaluation of analytical accuracy of HER2 status in patients with breast cancer8
Analyses of ABO blood groups with susceptibility and symptomatic variations of COVID‐19 infection, a questionnaire‐based survey8
Host‐microbe metatranscriptome reveals differences between acute and chronic infections in diabetes‐related foot ulcers7
Diagnostics with clinical microbiome‐based identification of microorganisms in patients with brain abscesses—a prospective cohort study7
Canola oilseed‐ and Escherichia coli‐ derived hepatitis C virus (HCV) core proteins adjuvanted with oil bodies, induced robust Th1‐oriented immune responses in immunized mice7
Reduced frequency of T helper 17 and T helper 1 cells and their association with critical coronavirus disease 20197
Tertiary lymphoid structures and gastric cancer prognosis7
IgG4‐positive plasma cells in Hashimoto thyroiditis: IgG4‐related disease or inflammation‐related IgG4‐positivity?7
Identification of microorganisms directly from blood culture bottles with polymicrobial growth: comparison of FilmArray and direct MALDI‐TOF MS7
Dual role of B7‐H6 as a novel prognostic marker in hepatocellular carcinoma7
Aquaporins in pancreatic ductal adenocarcinoma7
Sclerosing epithelioid fibrosarcoma: in‐depth review of a genetically heterogeneous tumor7
Animal models of chronic and recurrent Pseudomonas aeruginosa lung infection: significance of macrolide treatment6
Acinetobacter baumannii: insights towards a comprehensive approach for the prevention of outbreaks in health‐care facilities6
Human rhinovirus 16 induces antiviral and inflammatory response in the human vascular endothelium6
BUB1 predicts poor prognosis and immune status in liver hepatocellular carcinoma6
Prognostic implications of the tumor immune microenvironment and immune checkpoint pathway in primary central nervous system diffuse large B‐cell lymphoma in the North Indian population6
Altered gut microbiota in hepatocellular carcinoma: Insights into the pathogenic mechanism and preclinical to clinical findings6
Extensive microbiological respiratory tract specimen characterization in critically ill COVID‐19 patients6
Implant‐associated osteomyelitis: Development, characterisation, and application of a porcine model6
Azole resistance in Candida auris: mechanisms and combinatorial therapy6
Performance of PCR‐based syndromic testing compared to bacterial culture in patients with suspected pneumonia applying microscopy for quality assessment6
The panel of syntaxin 1 and insulinoma‐associated protein 1 outperforms classic neuroendocrine markers in pulmonary neuroendocrine neoplasms6
Nuclear overexpression levels of MAGE‐A3 predict poor prognosis in patients with prostate cancer6
Potential impact of the COVID‐19 pandemic on the national and regional incidence, epidemiology and diagnostic testing of chlamydia and gonorrhoea in Sweden, 20206
High prevalence of pharyngeal bacterial pathogens among healthy adolescents and young adults6
Tourniquet‐induced ischemia and reperfusion in subcutaneous tissue, skeletal muscle, and calcaneal cancellous bone6
Do mast cells contribute to the continued survival of vertebrates?6
Serum ACE as a prognostic biomarker in COVID‐19: a case series6
Detection methods targeting the positive‐ and negative‐sense RNA transcripts from plus‐stranded RNA viruses5
A possible interplay between HR‐HPV and stemness in tumor development: an in vivo investigation of CD133 as a putative marker of cancer stem cell in HPV18‐infected KB cell line5
Weight‐based cefuroxime dosing provides comparable orthopedic target tissue concentrations between weight groups – a microdialysis porcine study5
Dynamics of a Staphylococcus aureus infective endocarditis simulation model5
Silencing KLF16 inhibits oral squamous cell carcinoma cell proliferation by arresting the cell cycle and inducing apoptosis5
Malignant peripheral nerve sheath tumors arising from schwannomas: case series and literature review5
Highly sensitive duplex MSI test and BAT40 germline polymorphism5
Autopsies in pandemics – a perspective on barriers and benefits. Is it time for a revival?5
Prognostic significance of atypical mitotic figures in smooth muscle tumors of uncertain malignant potential (STUMP) of the uterus and uterine adnexa5
High YAP and TEAD4 immunolabelings are associated with poor prognosis in patients with gallbladder cancer5
A metatranscriptomic approach to explore longitudinal tissue specimens from non‐healing diabetes related foot ulcers5
Emergence of circulating influenza A H3N2 viruses with genetic drift in the matrix gene: be alert of false‐negative test results5
Reliability of Ki67 visual scoring app compared to eyeball estimate and digital image analysis and its prognostic significance in hormone receptor‐positive breast cancer5
Clinicopathological and molecular characteristics of the alpha‐fetoprotein–producing gastric cancer: emphasis on two major subtypes5
Stanford parameters stratify the risk of recurrence in gynecologic smooth muscle tumors of uncertain malignant potential5
Distinct contribution of hyperbaric oxygen therapy to human neutrophil function and antibiotic efficacy against Staphylococcus aureus5
Female reproductive tract microbiome and early miscarriages5
Biomarkers for iron metabolism among patients hospitalized with community‐acquired pneumonia caused by infection with SARS‐CoV‐2, bacteria, and influenza5
Limitations of using 16S rRNA microbiome sequencing to predict oral squamous cell carcinoma4
Aspergilloma complicating previous COVID‐19 pneumonitis – a case report4
Location of OprD porin in Pseudomonas aeruginosa clinical isolates4
PCSK2 expression in neuroendocrine tumors points to a midgut, pulmonary, or pheochromocytoma–paraganglioma origin4
Performance analysis of high‐throughput HPV testing on three automated workflows4
Comparative evaluation of chemiluminescent immunoassay and enzyme‐linked immunosorbent assays for the diagnosis of West Nile virus infections4
Clinical aspects of histological and hormonal parameters in boys with cryptorchidism4
Vancomycin‐resistant Enterococcus faecium: should we screen on admission?4
Opportunistic non‐communicable diseases in times of COVID‐194
Evaluation of a polymyxin drop test for polymyxin resistance detection among non‐fermentative gram‐negative rods and enterobacterales resistant to carbapenems4
Vitamin A deficiency in K14E7HPV expressing transgenic mice facilitates the formation of malignant cervical lesions4
Molecular characterization of human adenoviruses associated with respiratory infection in Turkey4
Cranberry‐lingonberry juice affects the gut and urinary microbiome in children ‐ a randomized controlled trial4
A unique case of Fusobacterium nucleatum spondylodiscitis communicating with a pleural empyema through a fistula4
Effectiveness of fluconazole as antifungal prophylaxis in cancer patients undergoing chemotherapy, radiotherapy, or immunotherapy: systematic review and meta‐analysis4
The use of core genome multilocus sequence typing to determine the duration of vancomycin‐resistant Enterococcus faecium outbreaks4
A simple, safe and sensitive method for SARS‐CoV‐2 inactivation and RNA extraction for RT‐qPCR4
Expression of laminin‐5 gamma 2 chain predicts invasion of extramammary Paget’s disease cell4
Dynamics of skin microbiota in shoulder surgery infections4
The role of Pap smear in the diagnostics of endocervical adenocarcinoma4
Historical and contemporary views on cholera transmission: are we repeating past discussions? Can lessons learned from cholera be applied to COVID‐19?4
Bacterial invasion of the submicron osteocyte lacuna–canaliculi network (OLCN): a part of osteomyelitis disease biology3
Molecular epidemiology of community‐ and hospital‐associated Clostridioides difficile infections in Jönköping, Sweden, October 2017 – March 20183
Spindle cell tumors of the pleura and the peritoneum: pathologic diagnosis and updates3
Circulating miR‐15b, miR‐34a and miR‐218 as promising novel early low‐invasive biomarkers of cervical carcinogenesis3
Can a gluten‐free diet be partly protective for COVID‐19 infection?3
PD‐L1 expression and FGFR‐mutations among Danish patients diagnosed with metastatic urothelial carcinoma: A retrospective and descriptive study3
A novel fully human recombinant antibody neutralizing α‐hemolysin of Staphylococcus aureus3
Human lung vascular endothelium may limit viral replication and recover in time upon the infection with rhinovirus HRV163
Study of humoral and cellular immunity in vaccinated with mRNA‐12733
The potential importance of autophagy genes expression profile dysregulation and ATG polymorphisms in COVID‐19 pathogenesis3
Multiplex immunofluorescence staining of coverslip‐mounted paraffin‐embedded tissue sections3
Screening the Tocriscreen™ bioactive compound library in search for inhibitors of Candida biofilm formation3
Good's syndrome: brief overview of an enigmatic immune deficiency3
Elevated expression of the AIM2 gene in response to Helicobacter pylori along with the decrease of NLRC4 inflammasome is associated with peptic ulcer development3
Blocking coprophagy increases the levels of inflammation and depression in healthy mice as well as mice receiving fecal microbiota transplantation from disease model mice donors3
Subtyping of male breast cancer by PAM50 and immunohistochemistry: a pilot study of a consecutive Danish cohort3
Is clindamycin a potential treatment for prostatitis?3
Formulation of a recombinant HIV‐1 polytope candidate vaccine with naloxone/alum mixture: induction of multi‐cytokine responses with a higher regulatory mechanism3
Cytokeratin 13 (CK13) expression in cancer: a tissue microarray study on 10,439 tumors3
Vaginal microbiome following orally administered probiotic2
Mucosal microbiotas and their role in stem cell transplantation2
Aneurysmal bone cyst and osteoblastoma after neoadjuvant denosumab: histologic spectrum and potential diagnostic pitfalls2
Louis Pasteur and the birth of microbiology in Denmark2
Preoperative BRAFV600E mutation detection in thyroid carcinoma by immunocytochemistry2
Antizyme inhibitor 2 (AZIN2) associates with better prognosis of head and neck minor salivary gland adenoid cystic carcinoma2
Gastrointestinal dysbiosis and Escherichia coli pathobionts in inflammatory bowel diseases2
PD‐L1 and PD‐1 expression in thyroid follicular epithelial dysplasia: Hashimoto thyroiditis related atypia and potential papillary carcinoma precursor2
STK11 mutation affects the killing effect of NK cells to promote the progression of lung adenocarcinoma2
Early IL‐2 treatment of mice with Pseudomonas aeruginosa pneumonia induced PMN‐dominating response and reduced lung pathology2
Single cells and bacterial biofilm populations in chronic wound infections2
A heptadeca amino acid peptide subunit of cathelicidin LL‐37 has previously unreported antifungal activity2
Nephrotic syndrome and pulmonary hypertension as complications of intravenous drug abuse2
The microbiome in the pathogenesis of lung cancer2
The expression and prognostic relevance of programmed cell death protein 1 in tongue squamous cell carcinoma2
Protein O‐mannosyltransferase Rv1002c contributes to low cell permeability, biofilm formation in vitro, and mycobacterial survival in mice2
Diagnostic utility of the combined use of HNF4A and GATA3 in distinction between primary and metastatic breast and gastric carcinomas2
Characterization of in vitro 3D cultures2
Rifampicin does not reduce moxifloxacin concentrations at the site of infection and may not improve treatment outcome of a one‐stage exchange surgery protocol of implant‐associated osteomyelitis lesio2
Invasive pulmonary aspergillosis in the intensive care unit: current challenges and best practices2
Characterization of a lytic EBP bacteriophage with large size genome against Enterobacter cloacae2
Analysis of the correlation between P27 expression and Helicobacter pylori infection in gastric cancer2
HIV‐associated infective native aortic aneurysms2
Epidemiology of bacteria and viruses in the respiratory tract of humans and domestic pigs2
Reduced phosphatidylcholine level in the intestinal mucus layer of prediabetic NOD mice2
Association of Toll‐like receptor 2 rs111200466 polymorphism with low serum levels of IL‐33 in early childhood2
Immunohistochemical somatostatin receptor expression in insulinomas2
Systematic review on the current knowledge and use of single‐cell RNA sequencing in head and neck cancer2
Ectopic thyroid in EBUS: experience from a quality assurance programme2
Mycoplasma genitalium prevalence and macrolide resistance‐associated mutations and coinfection with Chlamydia trachomatis in Southern Jutland, Denmark2
Pentraxin‐3 detected in human saliva shows limited correlation with biomarkers associated with systemic inflammation2
Intestinal metaplasia is a precursor lesion for sinonasal intestinal‐type adenocarcinoma: genomic investigation of a case proving this hypothesis2
Comparison of growth and morphology of Borrelia burgdorferi sensu lato in BSK‐H and BSK‐II media stored for prolonged periods2
On the history of human coronaviruses2
New contributions on chronic low back pain: disc infection or contaminated cultures?2
Primary skin abscess microbiota a systematic review2
Disturbance in the oropharyngeal microbiota in relation to antibiotic and proton pump inhibitor medication and length of hospital stay2
Cytohistological findings in HPV‐negative cases from HPV primary screening programme: quality assurance study1
Close monitoring and early intervention: management principles for cystic fibrosis in Denmark1
Evaluation of the Xpert MTB/RIF test accuracy for diagnosis of tuberculosis in areas with a moderate tuberculosis burden1
Diarrhoea‐causing microorganisms are rare in adult patients undergoing diagnostic laparoscopy for suspected appendicitis: a prospective observational cohort study1
A survey of mechanisms underlying current and potential COVID‐19 vaccines1
1
Native aortic valve Staphylococcus warneri endocarditis after COVID‐19 infection: a case report and a review of literature1
Polyphyllin I, a strong antifungal compound against Candida albicans1
Histopathological Helsinki score of colorectal liver metastases predicts survival after liver resection1
Pre‐existing, treatment‐specific resistance‐associated substitutions in hepatitis C virus genotype 1 and 3 and viral RNA titers during treatment with direct‐acting antivirals1
Associations between invasive aspergillosis and cytomegalovirus in lung transplant recipients: a nationwide cohort study1
Is increased Staphylococcus aureus colonization during military service caused by specific genotypes? Molecular examination of long‐term carriage in a prospective cohort study1
Genomic characterization of beta‐haemolytic streptococci isolated from prosthetic joint infections1
SARS‐CoV‐2 infection in an advanced rheumatoid arthritis patient1
Toll‐like receptors 3, 7, 8, and 9 in gastric cancer1
Mutation of KRAS in colorectal adenocarcinoma in Greenland1
200 years of pasteurizing the world of science1
Epidemics before microbiology: Stories from the plague in 1711 and cholera in 1853 in Copenhagen1
Characteristics of de novo cancer in liver transplant recipients1
Whole genome sequencing reveals two genetically distinct MRSA outbreaks among people who inject drugs and homeless people in Copenhagen1
A porcine model of subcutaneous Staphylococcus aureus infection: a pilot study1
Shiga toxin‐producing Escherichia coli (STEC) stool multiplex PCR can replace culture for clinical diagnosis and follow‐up1
A case of false‐positive pneumococcal urinary antigen test in a bacteremic Streptococcus agalactiae infection1
APMIS pandemic editorial1
Mapping bacterial biofilm on explanted orthopedic hardware: An analysis of 14 consecutive cases1
Fourier‐transform infrared spectroscopy imaging is a useful adjunct to routine histopathology to identify failure of polyethylene inlays in revision total hip arthroplasty1
Inter‐observer agreement of tumor infiltrating lymphocytes in primary HER2‐positive breast cancer and correlation between tissue microarray and full tumor‐sections1
Patients with tinea pedis and onychomycosis are more likely to use disinfectants when washing textiles than controls1
Total fecal IgA levels increase and natural IgM antibodies decrease after gastric bypass surgery1
Injection site microflora in persons with diabetes: why needle reuse is not associated with increased infections?1
Undifferentiated–dedifferentiated endometrial carcinoma; the reappearance of an old friend with insights into the new data1
Is there a role of epigenetics in gut microbiome and neurological disorders?1
Chondromatous metaplasia within native cardiac valves: clinicopathologic characterization with particular focus upon aortic valves1
Infectious native aortic aneurysm with negative blood cultures: do not forget the pneumococcal urinary antigen test!1
Gene polymorphisms of TLR10: effects on bacterial meningitis outcomes in Angolan children1
The expression and prognostic relevance of CDH3 in tongue squamous cell carcinoma1
Immunohistochemical detection of double‐stranded RNA in formalin‐fixed paraffin‐embedded tissue1
E‐cadherin and aquaporin‐3 are downregulated in wound edges of human chronic wounds1
Murine burn lesion model for studying acute and chronic wound infections1
Investigating the role of Candida albicans as a universal substrate for oral bacteria using a transcriptomic approach: implications for interkingdom biofilm control?1
Antifungal drug resistance in Candida: a special emphasis on amphotericin B1
What the early pathologists got wrong, and right, about the pathology of Crohn’s disease: a historical perspective1
Beta‐hemolytic streptococci A, C, and G are susceptible to cloxacillin1
Evaluation of transcription factors and cytokine expressions of T‐cell subsets in CD19 deficiency and their possible relationship with autoimmune disease1
An increase in use of antifungals for superficial infections in Denmark during 1997–20181
Short communication: dog bite and back pain1
Screening the medicine for malaria venture's Pandemic Response Box to identify novel inhibitors of Candida albicans and Candida auris biofilm formation1
Predicting the clinical efficacy of JAK inhibitor treatment for patients with rheumatoid arthritis based on Fas+ T cell subsets1
Increased sputum lactate during oral glucose tolerance test in cystic fibrosis1
Circ_0006873 suppresses the osteogenic differentiation of human‐derived mesenchymal stem cells through mediating miR‐20a/SMURF2 axis in vitro1
BRAF mutation, TERT promoter mutation, and HER2 amplification in sporadic or neurofibromatosis‐related neurofibromas and malignant peripheral nerve sheath tumors: do these molecules have a signature i1
Endotracheal lactate reflects lower respiratory tract infections and inflammation in intubated patients1
Prevalence, molecular markers, and outcome of bronchial squamous carcinoma in situ in high‐risk subjects1
Association of sickle cell trait with β‐cell dysfunction and physical activity in adults living with and without HIV in Tanzania1
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