OOIR: Observatory of International Research

Papers

(The H4-Index of Proteins-Structure Function and Bioinformatics is 30. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-08-01 to 2025-08-01.)

Article	Citations
	430
Issue Information ‐ Forthcoming	346
	167
iNucRes‐ASSH: Identifying nucleic acid‐binding residues in proteins by using self‐attention‐based structure‐sequence hybrid neural network	158
Functional characterization of a hypothetical protein (TTHA1873) from Thermus thermophilus	104
Unraveling the Structural Basis of Biased Agonism in the β₂‐Adrenergic Receptor Through Molecular Dynamics Simulations	87
Application of AlphaFold models in evaluating ligandable cysteines across E3 ligases	85
Protein structuromics: A new method for protein structure–function crosstalk in glioma	62
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment	60
Order/Disorder Transitions Upon Protein Binding: A Unifying Perspective	57
Multiscale MD simulations of wild‐type and sickle hemoglobin aggregation	56
SARS‐CoV‐2 neutralizing antibody epitopes are overlapping and highly mutated which raises the chances of escape variants and requires development of broadly reactive vaccines	56
New simulation insights on the structural transition mechanism of bovine rhodopsin activation	55
rrQNet: Protein contact map quality estimation by deep evolutionary reconciliation	55
Molecular dynamics studies of CED‐4/CED‐9/EGL‐1 ternary complex reveal CED‐4 release mechanism in the linear apoptotic pathway of Caenorhabditis ele	54
Comparative analysis of permanent and transient domain–domain interactions in multi‐domain proteins	49
Protein‐Ligand Structure and Affinity Prediction in CASP16 Using a Geometric Deep Learning Ensemble and Flow Matching	45
Oxygen‐insensitive nitroreductase E. coliNfsA, but not NfsB, is inhibited by fumarate	45
Development of a Novel Method for Representing 3D Structures of Nucleotides Using the Concept of the TSR Algorithm and Evaluation of the Method Through Studying Specific Interactions Between DNAs and	45
Molecular dynamics analysis of a flexible loop at the binding interface of the SARS‐CoV‐2 spike protein receptor‐binding domain	45
Analyzing the cation‐aromatic interactions in proteins: Cation‐aromatic database V2.0	42
Issue Information ‐ Table of Content	40
Crystal structure of GTP‐dependent dephospho‐coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis	38
Issue Information ‐ Forthcoming	38
Tyrosine 288 in the extracellular domain of the human P2X7 receptor is critical for receptor function revealed by structural modeling and site‐directed mutagenesis	37

Thermodynamic consequences of stapling side‐chains on a peptide ligand using a lactam‐bridge: A theoretical study on anti‐angiogenic peptides targeting VEGF	36
Identification of key stabilizing interactions of amyloid‐β oligomers based on fragment molecular orbital calculations on macrocyclic β‐hairpin peptides	34
DynaBiS: A hierarchical sampling algorithm to identify flexible binding sites for large ligands and peptides	34
An in silico prediction of interaction models of influenza A virus PA and human C14orf166 protein from yeast‐two‐hybrid screening data	32
Molecular dynamics study reveals key disruptors of MEIG1–PACRG interaction	31
Location of S‐nitrosylated cysteines in protein three‐dimensional structures	30