OOIR: Observatory of International Research

Papers

(The H4-Index of Proteins-Structure Function and Bioinformatics is 28. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)

Article	Citations
	441
Issue Information ‐ Forthcoming	351
	170
iNucRes‐ASSH: Identifying nucleic acid‐binding residues in proteins by using self‐attention‐based structure‐sequence hybrid neural network	167
Functional characterization of a hypothetical protein (TTHA1873) from Thermus thermophilus	106
Unraveling the Structural Basis of Biased Agonism in the β₂‐Adrenergic Receptor Through Molecular Dynamics Simulations	93
Application of AlphaFold models in evaluating ligandable cysteines across E3 ligases	90
Order/Disorder Transitions Upon Protein Binding: A Unifying Perspective	65
rrQNet: Protein contact map quality estimation by deep evolutionary reconciliation	63
Multiscale MD simulations of wild‐type and sickle hemoglobin aggregation	63
New simulation insights on the structural transition mechanism of bovine rhodopsin activation	54
Molecular dynamics studies of CED‐4/CED‐9/EGL‐1 ternary complex reveal CED‐4 release mechanism in the linear apoptotic pathway of Caenorhabditis ele	51
Protein structuromics: A new method for protein structure–function crosstalk in glioma	50
Comparative analysis of permanent and transient domain–domain interactions in multi‐domain proteins	48
Protein‐Ligand Structure and Affinity Prediction in CASP16 Using a Geometric Deep Learning Ensemble and Flow Matching	46
Oxygen‐insensitive nitroreductase E. coliNfsA, but not NfsB, is inhibited by fumarate	40
Development of a Novel Method for Representing 3D Structures of Nucleotides Using the Concept of the TSR Algorithm and Evaluation of the Method Through Studying Specific Interactions Between DNAs and	40
SARS‐CoV‐2 neutralizing antibody epitopes are overlapping and highly mutated which raises the chances of escape variants and requires development of broadly reactive vaccines	38
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment	34
Analyzing the cation‐aromatic interactions in proteins: Cation‐aromatic database V2.0	34
Issue Information ‐ Table of Content	34
Crystal structure of GTP‐dependent dephospho‐coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis	32
Issue Information ‐ Forthcoming	32
Tyrosine 288 in the extracellular domain of the human P2X7 receptor is critical for receptor function revealed by structural modeling and site‐directed mutagenesis	31
Thermodynamic consequences of stapling side‐chains on a peptide ligand using a lactam‐bridge: A theoretical study on anti‐angiogenic peptides targeting VEGF	30

An in silico prediction of interaction models of influenza A virus PA and human C14orf166 protein from yeast‐two‐hybrid screening data	30
Surveying nonvisual arrestins reveals allosteric interactions between functional sites	29
Fusion of two unrelated protein domains in a chimera protein and its 3D prediction: Justification of the x‐ray reference structures as a prediction benchmark	29
An Overview of Property, Design, and Functionality of Linkers for Fusion Protein Construction	28