OOIR: Observatory of International Research

Papers

(The H4-Index of Proteins-Structure Function and Bioinformatics is 30. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
	407
Issue Information ‐ Forthcoming	322
	275
New simulation insights on the structural transition mechanism of bovine rhodopsin activation	154
iNucRes‐ASSH: Identifying nucleic acid‐binding residues in proteins by using self‐attention‐based structure‐sequence hybrid neural network	139
Protein structuromics: A new method for protein structure–function crosstalk in glioma	97
Characterization of the multidrug efflux transporter styMdtM from Salmonella enterica serovar Typhi	69
Functional characterization of a hypothetical protein (TTHA1873) from Thermus thermophilus	62
Molecular dynamics studies of CED‐4/CED‐9/EGL‐1 ternary complex reveal CED‐4 release mechanism in the linear apoptotic pathway of Caenorhabditis ele	56
rrQNet: Protein contact map quality estimation by deep evolutionary reconciliation	55
Evolutionary models of amino acid substitutions based on the tertiary structure of their neighborhoods	55
Comparative analysis of permanent and transient domain–domain interactions in multi‐domain proteins	52
Unraveling the Structural Basis of Biased Agonism in the β₂‐Adrenergic Receptor Through Molecular Dynamics Simulations	51
Order/Disorder Transitions Upon Protein Binding: A Unifying Perspective	49
Application of AlphaFold models in evaluating ligandable cysteines across E3 ligases	46
Conserved features of the MlaD domain aid the trafficking of hydrophobic molecules	45
Entropy‐based distance cutoff for protein internal contact networks	44
Molecular dynamics analysis of a flexible loop at the binding interface of the SARS‐CoV‐2 spike protein receptor‐binding domain	43
Protein‐Ligand Structure and Affinity Prediction in CASP16 Using a Geometric Deep Learning Ensemble and Flow Matching	42
Design and characterization of a novel dimeric blood–brain barrier penetrating TNFα inhibitor	42
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment	40
SARS‐CoV‐2 neutralizing antibody epitopes are overlapping and highly mutated which raises the chances of escape variants and requires development of broadly reactive vaccines	38
Oxygen‐insensitive nitroreductase E. coliNfsA, but not NfsB, is inhibited by fumarate	38
Analyzing the cation‐aromatic interactions in proteins: Cation‐aromatic database V2.0	36
Multiscale MD simulations of wild‐type and sickle hemoglobin aggregation	36

Surveying nonvisual arrestins reveals allosteric interactions between functional sites	35
Fusion of two unrelated protein domains in a chimera protein and its 3D prediction: Justification of the x‐ray reference structures as a prediction benchmark	35
Structure memes: Intuitive visualization of sequence logo and subfamily logo information in a 3D protein‐structural context	33
Issue Information ‐ Forthcoming	32
Issue Information ‐ Table of Content	32
Identification of key stabilizing interactions of amyloid‐β oligomers based on fragment molecular orbital calculations on macrocyclic β‐hairpin peptides	30
Location of S‐nitrosylated cysteines in protein three‐dimensional structures	30