OOIR: Observatory of International Research

Papers

(The H4-Index of Proteins-Structure Function and Bioinformatics is 25. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-11-01 to 2025-11-01.)

Article	Citations
Functional characterization of a hypothetical protein (TTHA1873) from Thermus thermophilus	366
	187
Issue Information ‐ Forthcoming	176
SARS‐CoV‐2 neutralizing antibody epitopes are overlapping and highly mutated which raises the chances of escape variants and requires development of broadly reactive vaccines	109
Application of AlphaFold models in evaluating ligandable cysteines across E3 ligases	107
iNucRes‐ASSH: Identifying nucleic acid‐binding residues in proteins by using self‐attention‐based structure‐sequence hybrid neural network	76
Development of a Novel Method for Representing 3D Structures of Nucleotides Using the Concept of the TSR Algorithm and Evaluation of the Method Through Studying Specific Interactions Between DNAs and	69
Protein‐Ligand Structure and Affinity Prediction in CASP16 Using a Geometric Deep Learning Ensemble and Flow Matching	68
Oxygen‐insensitive nitroreductase E. coliNfsA, but not NfsB, is inhibited by fumarate	58
Comparative analysis of permanent and transient domain–domain interactions in multi‐domain proteins	57
Issue Information ‐ Table of Content	55
Multiscale MD simulations of wild‐type and sickle hemoglobin aggregation	53
rrQNet: Protein contact map quality estimation by deep evolutionary reconciliation	43
New simulation insights on the structural transition mechanism of bovine rhodopsin activation	41
Molecular dynamics studies of CED‐4/CED‐9/EGL‐1 ternary complex reveal CED‐4 release mechanism in the linear apoptotic pathway of Caenorhabditis ele	39
Protein structuromics: A new method for protein structure–function crosstalk in glioma	35
Unraveling the Structural Basis of Biased Agonism in the β₂‐Adrenergic Receptor Through Molecular Dynamics Simulations	34
Analyzing the cation‐aromatic interactions in proteins: Cation‐aromatic database V2.0	34
Order/Disorder Transitions Upon Protein Binding: A Unifying Perspective	33
Issue Information ‐ Forthcoming	33
Issue Information ‐ Table of Content	32
Crystal structure of GTP‐dependent dephospho‐coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis	31
In Silico Characterization of Bromo‐DragonFLY Binding to the 5‐HT_2A Receptor: Molecular Insights Into a Potent Designer Psychedelic	30
Location of S‐nitrosylated cysteines in protein three‐dimensional structures	27
Thermodynamic consequences of stapling side‐chains on a peptide ligand using a lactam‐bridge: A theoretical study on anti‐angiogenic peptides targeting VEGF	26

Surveying nonvisual arrestins reveals allosteric interactions between functional sites	25
An Overview of Property, Design, and Functionality of Linkers for Fusion Protein Construction	25
An in silico prediction of interaction models of influenza A virus PA and human C14orf166 protein from yeast‐two‐hybrid screening data	25