OOIR: Observatory of International Research

Papers

(The TQCC of Genome is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
Correction: Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation	40
Genome-wide identification of bZIP transcription factor genes related to starch synthesis in barley (Hordeum vulgare L.)	23
Mitogenome evolution in Trichoderma afroharzianum strains: for a better understanding of distinguishing genus	21
Marsupial satellite DNA as faithful reflections of long-terminal repeat retroelement structure	17
Asp/ASPM phospho-regulation throughout the cell cycle	16
Genome Publication Awards 2021	15
The plastome of ArcticOxytropis arctobia(Fabaceae) is significantly different from that ofO. splendensand other related species	13
Genetic diversity of Asian and European common wheat lines assessed by fluorescence in situ hybridization	12
Linking the spatial and genomic structure of adaptive potential for conservation management: a review	12
Whole genome sequencing and analysis of benzo(a)pyrene-degrading bacteria Bacillus cereus M72-4	10
Differential DNA methylation analysis reveals key genes in Chinese Qingyu and Landrace pigs	10
Comparative analysis of transposable elements dynamics in fish with different sex chromosome systems	10
Genome assembly, analysis, and mining of Kocuria flava NIO_001: a thiopeptide antibiotic synthesizing bacterium isolated from marine sponge	10
Genomics-based taxonomy to clarify cannabis classification	10
Reduced representation bisulfite sequencing (RRBS) analysis reveals variation in distribution and levels of DNA methylation in white birch (Betula papyrifera) exposed to nickel	9
Cannabis, the multibillion dollar plant that no genebank wanted	9
Meta-analyses of the global multilocus genotypes of the human pathogen Campylobacter jejuni	9
Identification of adulteration in the market samples of saffron using morphology, HPLC, HPTLC, and DNA barcoding methods	9
Introgressed DNA within a Zea mays near-isogenic line displays lower levels of 24nt sRNA expression than the homologous region from the recurrent parent	8
Alfalfa transcriptome profiling provides insight into miR156-mediated molecular mechanisms of heat stress tolerance	8
Aeromonas salmonicida isolates from Canada demonstrate wide distribution and clustering among mesophilic strains	8
Karyotype structure and cytogenetic markers of Amoimyrmex bruchi and Amoimyrmex silvestrii: contribution to understanding leaf-cutting ant relationships	8
Chloroplast genome of Ecbolium viride (Forssk.) Alston: plastome evolution and phylogenomics of Justiceae (Acanthaceae, Acanthoideae)	8
Evidence for hexasomic inheritance in Chrysanthemum morifolium Ramat. based on analysis of EST-SSR markers	8
DNA at the whim of the water: environmental DNA as a course-based undergraduate research experience	8

Genes and proteins associated with ribeye area and meat tenderness in a commercial Nellore cattle population	8
Paenibacillus terrae NK3-4 regulates the transcription of growth-related and stress resistance-related genes in rice	7
Lack of variation in nuclear DNA content in avian muscle	7
Microbiomes of willow-galling sawflies: effects of host plant, gall type, and phylogeny on community structure and function	6
The filamins of Drosophila	6
Transposable element landscapes illuminate past evolutionary events in the endangered fern Vandenboschia speciosa	6
Genome organization of major tandem repeats and their specificity for heterochromatin of macro- and microchromosomes in Japanese quail	6
Genetic insights: integrating DNA barcoding with taxonomy in the study of Baccaurea (Phyllanthaceae)	6
Fine mapping of a major QTL qPA7-1 for low hydrocyanic acid content in sorghum–sudangrass hybrid	6
Heat shock responsive genes in Brassicaceae: genome-wide identification, phylogeny, and evolutionary associations within and between genera	6
Whole-genome comparative analysis reveals genetic mechanisms of disease resistance and heat tolerance of tropicalBos indicuscattle breeds	5
Genes influencing deposition of melanin in breast muscle of the Xuefeng black bone chicken based on bioinformatic analysis	5
Adjusting extracellular pH to prevent entry of SARS-CoV-2 into human cells	5
Identification of alternative splicing and RNA-binding proteins involved in myocardial ischemia–reperfusion injury	5
Using telomeric length measurements and methylation to understand the karyotype diversification of Ctenomys minutus (a small fossorial mammal)	5
Development and application of whole-chromosome painting of chromosomes 7A and 8A of Arachis duranensis based on chromosome-specific single-copy oligonucleotides	5
Analysis of the winter oilseed rape recombination landscape suggests maternal–paternal bias	5
Frequency of cytosine methylation in the adjacent regions of soybean retrotransposon SORE-1 depends on chromosomal location	5
Taxonomic classification of the bacterial endosymbiont Wolbachia based on next-generation sequencing: is there molecular evidence for its presence in tardigrades?	5
Structure and genetic diversity of Canadian Maritimes wild hops	5
Evolutionary speed of proteins in the genus Staphylococcus: a focus on proteins involved in natural competence	5
AVITI as an alternative to Illumina for low-cost genome-wide genotyping	5
Environmental drivers behind the genetic differentiation in mountain chickadees (Poecile gambeli)	5
An endogenous retrovirus presumed to have been endogenized or relocated recently in a marsupial, the red-necked wallaby	5
Identification and characterization of heat-responsive microRNAs at the booting stage in two rice varieties, 9311 and Nagina 22	4
Functional analysis of co-expression networks of zebrafish ace2 reveals enrichment of pathways associated with development and disease	4
Specific amino acid changes correlate with pathogenic flavobacteria	4
Development of EST-SSR markers in Bergenia ciliata using de novo transcriptome sequencing	4
Complete genome analysis of Pseudomonas furukawaii ZS1 isolated from grass carp (Ctenopharyngodon idellus) culture water	4
Genetic diversity and positive signatures of selection in indigenous cattle breeds of Iran	4
Identification of lncRNAs in response to infection byPlasmodiophora brassicaeinBrassica napusand development of lncRNA-based SSR markers	4
Transcriptome profiling of differentially expressed genes of male and female inflorescences in spinach (Spinacia oleracea L.)	4
Satellite DNAs, heterochromatin, and sex chromosomes of the wattled jacana (Charadriiformes; Jacanidae): a species with highly rearranged karyotype	4
Comparative genome analysis ofPasteurella multocidastrains of porcine origin	4