OOIR: Observatory of International Research

Papers

(The TQCC of Genome is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Machine learning for precision medicine	227
Epigenetic regulation of ACE2, the receptor of the SARS-CoV-2 virus¹	57
Epigenetic mechanisms influencing COVID-19	41
Gut microbiome-mediated epigenetic regulation of brain disorder and application of machine learning for multi-omics data analysis	32
BIOSCAN: DNA barcoding to accelerate taxonomy and biogeography for conservation and sustainability	30
Clubroot in Brassica: recent advances in genomics, breeding, and disease management	29
Fast-GBS v2.0: an analysis toolkit for genotyping-by-sequencing data	24
Plant DNA barcoding necessitates marker-specific efforts to establish more comprehensive reference databases	21
The chicken model organism for epigenomic research	19
Genome-wide identification and characterization of WOX genes in Cucumis sativus	18
Identification of lncRNAs in response to infection byPlasmodiophora brassicaeinBrassica napusand development of lncRNA-based SSR markers	17
Nematode biodiversity assessments need vouchered databases: A BOLD reference library for plant-parasitic nematodes in the superfamily Criconematoidea	16
Taxonomic classification of the bacterial endosymbiont Wolbachia based on next-generation sequencing: is there molecular evidence for its presence in tardigrades?	16
Cannabis, the multibillion dollar plant that no genebank wanted	15
A study on non-synonymous mutational patterns in structural proteins of SARS-CoV-2	15
Multi-marker DNA metabarcoding reflects tardigrade diversity in different habitats	14
Barcoding a can of worms: testing cox1 performance as a DNA barcode of Nematoda	14
Primate-specific histone variants	14
Transcriptional enhancers: from prediction to functional assessment on a genome-wide scale	13
DMSO and betaine significantly enhance the PCR amplification of ITS2 DNA barcodes from plants	13
Genomics and bioinformatics capacity in Africa: no continent is left behind	12
Analysis of the core genome and pangenome of Clostridium butyricum	12
The genetics ofCannabis—genomic variations of key synthases and their effect on cannabinoid content	12
Karyotype structure and cytogenetic markers of Amoimyrmex bruchi and Amoimyrmex silvestrii: contribution to understanding leaf-cutting ant relationships	11
Reflections on the organization and the physical state of chromatin in eukaryotic cells	11

Genomics-based taxonomy to clarify cannabis classification	11
Revisiting the evolution of the North American tetraploid treefrog (Hyla versicolor)	11
Genomic regions associated with resistance to Fusarium wilt in castor identified through linkage and association mapping approaches	10
Drug discovery and chemical probing inDrosophila	10
In-vitro anti-fungal assay and association analysis reveal a role for the Pinus monticola PR10 gene (PmPR10-3.1) in quantitative disease resistance to white pine blister rust	10
Distribution of FISH oligo-5S rDNA and oligo-(AGGGTTT)₃ in Hibiscus mutabilis L.	10
Origins and chromosome differentiation of Thinopyrum elongatum revealed by PepC and Pgk1 genes and ND-FISH	9
Enriched tandem repeats in chromosomal fusion points of Rineloricaria latirostris (Boulenger, 1900) (Siluriformes: Loricariidae)	9
Transfer of fusarium head blight resistance from Thinopyrum elongatum to bread wheat cultivar Chinese Spring	9
Full-length transcriptome analysis and identification of genes involved in asarinin and aristolochic acid biosynthesis in medicinal plant Asarum sieboldii	8
Microbiomes of willow-galling sawflies: effects of host plant, gall type, and phylogeny on community structure and function	8
Genotyping by sequencing for SNP marker development in onion	8
Versatile method to measure locomotion in adult Drosophila	8
Introgression of Thinopyrum elongatum DNA fragments carrying resistance to fusarium head blight into Triticum aestivum cultivar Chinese Spring is associated with alteration of gene expre	8
Alfalfa transcriptome profiling provides insight into miR156-mediated molecular mechanisms of heat stress tolerance	8
Genome-wide identification of bZIP transcription factor genes related to starch synthesis in barley (Hordeum vulgare L.)	8
Environmental DNA bioassays corroborate field data for detection of overwintering species at risk Blanding’s turtles (Emydoidea blandingii)	8
First records raise questions: DNA barcoding of Odonata in the middle of the Mediterranean	8
Molecular diversity and species delimitation in the family Gasteruptiidae (Hymenoptera: Evanioidea)	8
Adjusting extracellular pH to prevent entry of SARS-CoV-2 into human cells	7
Genetic diversity and ancestry of cacao (Theobroma cacaoL.) in Dominica revealed by single nucleotide polymorphism markers	7
The neonicotinoid insecticide thiamethoxam enhances expression of stress-response genes in Zea mays in an environmentally specific pattern	6
An endogenous retrovirus presumed to have been endogenized or relocated recently in a marsupial, the red-necked wallaby	6
Extreme genetic diversity among springtails (Collembola) in subterranean calcretes of arid Australia	6
Molecular identification and DNA barcode screening of acaroid mites in ground flour dust	6
Genome-wide identification of C2H2-type zinc finger gene family members and their expression during abiotic stress responses in orchardgrass (Dactylis glomerata)	6
SmFLS negatively regulates peel coloring of eggplant (Solanum melongena) under high temperature	6
Complete chloroplast genome sequencing and comparative analysis reveals changes to the chloroplast genome after allopolyploidization in Cucumis	6
Comparative root transcriptome analysis of two soybean cultivars with different cadmium sensitivities reveals the underlying tolerance mechanisms	6
Characterization and expression of the Pirin gene family in Triticum aestivum	6
Genome organization of major tandem repeats and their specificity for heterochromatin of macro- and microchromosomes in Japanese quail	6
Genome-wide characterization of the PDI gene family in Medicago truncatula and their roles in response to endoplasmic reticulum stress	5
The role of chromatin organizer Satb1 in shaping TCR repertoire in adult thymus	5
Evidence for hexasomic inheritance in Chrysanthemum morifolium Ramat. based on analysis of EST-SSR markers	5
Karyotype conservation and genomic organization of repetitive sequences in the leaf-cutting ant Atta cephalotes (Linnaeus, 1758) (Formicidae: Myrmicinae)	5
Transcriptome profiling of differentially expressed genes of male and female inflorescences in spinach (Spinacia oleracea L.)	5
Molecular confirmation of varietal status in bottle gourd (Lagenaria siceraria) using genotyping-by-sequencing	5
Environmental DNA detection of endangered and invasive species in Kejimkujik National Park and Historic Site	5
Identification of the 12-oxophytoeienoic acid reductase (OPR) gene family in pepper (Capsicum annuum L.) and functional characterization of CaOPR6 in pepper fruit development and	5
Comparative genomics of the Pasteurella multocida toxin	5
Karyotyping Dasypyrum breviaristatum chromosomes with multiple oligonucleotide probes reveals the genomic divergence in Dasypyrum	5
miR-181a-5p is a potential candidate epigenetic biomarker in multiple sclerosis	5
Marsupial satellite DNA as faithful reflections of long-terminal repeat retroelement structure	5
An 82 bp tandem repeat family typical of 3′ non-coding end of Gypsy/TAT LTR retrotransposons is conserved in Coffea spp. pericentromeres	5
Analysis and evaluation of different sequencing depths from 5 to 20 million reads in shotgun metagenomic sequencing, with optimal minimum depth being recommended	5
Aeromonas salmonicida isolates from Canada demonstrate wide distribution and clustering among mesophilic strains	5
Identification and expression analysis of chloroplast ribonucleoproteins (cpRNPs) in Arabidopsis and rice	5
Differentiation of Lingxiaohua and Yangjinhua by chloroplast genome sequencing and DNA barcoding markers	5
Genes influencing deposition of melanin in breast muscle of the Xuefeng black bone chicken based on bioinformatic analysis	5