OOIR: Observatory of International Research

Papers

(The median citation count of Genome is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
Correction: Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation	40
Genome-wide identification of bZIP transcription factor genes related to starch synthesis in barley (Hordeum vulgare L.)	23
Mitogenome evolution in Trichoderma afroharzianum strains: for a better understanding of distinguishing genus	21
Marsupial satellite DNA as faithful reflections of long-terminal repeat retroelement structure	17
Asp/ASPM phospho-regulation throughout the cell cycle	16
Genome Publication Awards 2021	15
The plastome of ArcticOxytropis arctobia(Fabaceae) is significantly different from that ofO. splendensand other related species	13
Linking the spatial and genomic structure of adaptive potential for conservation management: a review	12
Genetic diversity of Asian and European common wheat lines assessed by fluorescence in situ hybridization	12
Differential DNA methylation analysis reveals key genes in Chinese Qingyu and Landrace pigs	10
Comparative analysis of transposable elements dynamics in fish with different sex chromosome systems	10
Genome assembly, analysis, and mining of Kocuria flava NIO_001: a thiopeptide antibiotic synthesizing bacterium isolated from marine sponge	10
Genomics-based taxonomy to clarify cannabis classification	10
Whole genome sequencing and analysis of benzo(a)pyrene-degrading bacteria Bacillus cereus M72-4	10
Cannabis, the multibillion dollar plant that no genebank wanted	9
Meta-analyses of the global multilocus genotypes of the human pathogen Campylobacter jejuni	9
Identification of adulteration in the market samples of saffron using morphology, HPLC, HPTLC, and DNA barcoding methods	9
Reduced representation bisulfite sequencing (RRBS) analysis reveals variation in distribution and levels of DNA methylation in white birch (Betula papyrifera) exposed to nickel	9
Introgressed DNA within a Zea mays near-isogenic line displays lower levels of 24nt sRNA expression than the homologous region from the recurrent parent	8
Alfalfa transcriptome profiling provides insight into miR156-mediated molecular mechanisms of heat stress tolerance	8
Aeromonas salmonicida isolates from Canada demonstrate wide distribution and clustering among mesophilic strains	8
Karyotype structure and cytogenetic markers of Amoimyrmex bruchi and Amoimyrmex silvestrii: contribution to understanding leaf-cutting ant relationships	8
Chloroplast genome of Ecbolium viride (Forssk.) Alston: plastome evolution and phylogenomics of Justiceae (Acanthaceae, Acanthoideae)	8
Evidence for hexasomic inheritance in Chrysanthemum morifolium Ramat. based on analysis of EST-SSR markers	8
DNA at the whim of the water: environmental DNA as a course-based undergraduate research experience	8

Genes and proteins associated with ribeye area and meat tenderness in a commercial Nellore cattle population	8
Paenibacillus terrae NK3-4 regulates the transcription of growth-related and stress resistance-related genes in rice	7
Lack of variation in nuclear DNA content in avian muscle	7
Transposable element landscapes illuminate past evolutionary events in the endangered fern Vandenboschia speciosa	6
Genome organization of major tandem repeats and their specificity for heterochromatin of macro- and microchromosomes in Japanese quail	6
Genetic insights: integrating DNA barcoding with taxonomy in the study of Baccaurea (Phyllanthaceae)	6
Fine mapping of a major QTL qPA7-1 for low hydrocyanic acid content in sorghum–sudangrass hybrid	6
Heat shock responsive genes in Brassicaceae: genome-wide identification, phylogeny, and evolutionary associations within and between genera	6
Microbiomes of willow-galling sawflies: effects of host plant, gall type, and phylogeny on community structure and function	6
The filamins of Drosophila	6
Using telomeric length measurements and methylation to understand the karyotype diversification of Ctenomys minutus (a small fossorial mammal)	5
Development and application of whole-chromosome painting of chromosomes 7A and 8A of Arachis duranensis based on chromosome-specific single-copy oligonucleotides	5
Analysis of the winter oilseed rape recombination landscape suggests maternal–paternal bias	5
Frequency of cytosine methylation in the adjacent regions of soybean retrotransposon SORE-1 depends on chromosomal location	5
Taxonomic classification of the bacterial endosymbiont Wolbachia based on next-generation sequencing: is there molecular evidence for its presence in tardigrades?	5
Structure and genetic diversity of Canadian Maritimes wild hops	5
Evolutionary speed of proteins in the genus Staphylococcus: a focus on proteins involved in natural competence	5
AVITI as an alternative to Illumina for low-cost genome-wide genotyping	5
Environmental drivers behind the genetic differentiation in mountain chickadees (Poecile gambeli)	5
An endogenous retrovirus presumed to have been endogenized or relocated recently in a marsupial, the red-necked wallaby	5
Whole-genome comparative analysis reveals genetic mechanisms of disease resistance and heat tolerance of tropicalBos indicuscattle breeds	5
Genes influencing deposition of melanin in breast muscle of the Xuefeng black bone chicken based on bioinformatic analysis	5
Adjusting extracellular pH to prevent entry of SARS-CoV-2 into human cells	5
Identification of alternative splicing and RNA-binding proteins involved in myocardial ischemia–reperfusion injury	5
Identification and characterization of heat-responsive microRNAs at the booting stage in two rice varieties, 9311 and Nagina 22	4
Functional analysis of co-expression networks of zebrafish ace2 reveals enrichment of pathways associated with development and disease	4
Specific amino acid changes correlate with pathogenic flavobacteria	4
Development of EST-SSR markers in Bergenia ciliata using de novo transcriptome sequencing	4
Complete genome analysis of Pseudomonas furukawaii ZS1 isolated from grass carp (Ctenopharyngodon idellus) culture water	4
Genetic diversity and positive signatures of selection in indigenous cattle breeds of Iran	4
Identification of lncRNAs in response to infection byPlasmodiophora brassicaeinBrassica napusand development of lncRNA-based SSR markers	4
Transcriptome profiling of differentially expressed genes of male and female inflorescences in spinach (Spinacia oleracea L.)	4
Satellite DNAs, heterochromatin, and sex chromosomes of the wattled jacana (Charadriiformes; Jacanidae): a species with highly rearranged karyotype	4
Comparative genome analysis ofPasteurella multocidastrains of porcine origin	4
Circadian rhythm and immunity: decoding chrono-immunology using the model organism Drosophila melanogaster	3
Gene regulation supporting sociality shared across lineages and variation in complexity	3
High nucleotide similarity of three Copia lineage LTR retrotransposons among plant genomes	3
Chromosome painting reveals the genomic structure of three polyploid species of Ipomoea	3
Analysis of apoptosis levels and MMP7 gene expression in ovaries of postpartum female rabbits after long-term use of LHRH-A3	3
Insights on mauritiana-like elements diversity in Mayetiola destructor and M. hordei (Diptera: Cecidomyiidae)	3
Authentication of garlic (Allium sativum L.) supplements using a trnL^UAA mini-barcode	3
Phylogenomics of transcriptionally active AP2/ERF and bHLH transcription factors and study of their promoter regions in Nothapodytes nimmoniana (J.Graham) Mabb	3
Full-length transcriptome analysis and identification of genes involved in asarinin and aristolochic acid biosynthesis in medicinal plant Asarum sieboldii	3
Plant immune resilience to a changing climate: molecular insights and biotechnological roadmaps	3
Broad histone H4 monomethylation marks expressed genes involved in translation	3
Cytogenetic characterization and karyotype evolution in six Macroptilium species (Leguminosae)	3
Note of appreciation	3
Note of appreciation	3
Differences between predicted outer membrane proteins of Pasteurella multocida, Histophilus somni, and genotype 1 and 2 Mannheimia haemolytica strains isolated from cattle	3
Genomics and bioinformatics capacity in Africa: no continent is left behind	3

Chromosomal and molecular perspectives on Potamotrygon motoro (Müller & Henle, 1841) from central Amazon	3
The complete chloroplast genome of Aristolochia fangchi provided insights into the phylogeny and species identification of Aristolochia	3
DNA barcode analysis of the endangered green turtle (Chelonia mydas) in Mexico¹	2
miR-181a-5p is a potential candidate epigenetic biomarker in multiple sclerosis	2
Association mapping identifies stable loci containing novel genes for developmental and reproductive traits in sorghum	2
The repetitive DNA landscape in the brizantha agamic complex of Urochloa P. Beauv.	2
Fingerprint construction through genotyping by sequencing for applied breeding in Brassica rapa	2
Molecular identification and DNA barcode screening of acaroid mites in ground flour dust	2
Identification of the 12-oxophytoeienoic acid reductase (OPR) gene family in pepper (Capsicum annuum L.) and functional characterization of CaOPR6 in pepper fruit development and	2
Identification of full-length genes involved in the biosynthesis of β-caryophyllene and lupeol from the leaf transcriptome of Ayapana triplinervis	2
Conventional cytogenetics and microsatellite chromosomal distribution in social wasp Mischocyttarus cassununga (Ihering, 1903) (Vespidae, Polistinae, Mischocyttarini)	2
Genomic prediction in Brassica napus: evaluating the benefit of imputed whole-genome sequencing data	2
Diversity and antigenic potentials of Mycoplasmopsis bovis secreted and outer membrane proteins within a core genome of strains isolated from North American bison and cattle	2
Patterns of genome size evolution versus fraction of repetitive elements in statu nascendi species: the case of the willistoni subgroup of Drosophila (Diptera, Drosophilidae)	2
SmFLS negatively regulates peel coloring of eggplant (Solanum melongena) under high temperature	2
Genomic regions associated with coat color in Gir cattle	2
In-vitro anti-fungal assay and association analysis reveal a role for the Pinus monticola PR10 gene (PmPR10-3.1) in quantitative disease resistance to white pine blister rust	2
Identification and expression analysis of C2H2-zinc finger protein genes reveals their role in stress tolerance in Brassica napus	2
A quick guide to the calcium-dependent protein kinase family in Brassica napus	2
Chromosomes in the African frog genus Tomopterna (Pyxicephalidae) and probing the origin of tetraploid Tomopterna tandyi	2
Half-chromatid mutation as a possible cause of mosaic males and females in Hymenoptera and rare fertile male tortoiseshell cats	2
The complete chloroplast genome of Persicaria perfoliata and comparative analysis with four medicinal plants of Polygonaceae	2
Genomic DNA methylation analysis reveals that BLNK is a key potential gene in the regulation of autophagy-related thyroid cancer progression	2
Sequence-based identification of polyamine oxidase genes in Sorghum bicolor L.	2
Genomic regions associated with resistance to Fusarium wilt in castor identified through linkage and association mapping approaches	2
Investigating the expression of fertility-regulating LncRNAs in multiparous and uniparous Shal ewe's ovaries	2
Understanding microchromosomal organization and evolution in four representative woodpeckers (Picidae, Piciformes) through BAC-FISH analysis	2
Satellitome analysis on Microtus thomasi (Arvicolinae) genome, a mammal species with high karyotype and sex chromosome variations	1
Molecular characterization of a novel mutation in the E1 flowering gene induced by gamma irradiation in soybean	1
Peroxisome inter-organelle cooperation in Drosophila	1
Comparative analysis of the diversity of trinucleotide repeats in bacterial genomes	1
Chromosome mapping of retrotransposon AviRTE in a neotropical bird species: Trogon surrucura (Trogoniformes; Trogonidae)	1
Chromosome homologies and polymorphisms in a Neotropical species complex of frogs revealed by the U2 snRNA gene	1
Should I shrink or should I grow: cell size changes in tissue morphogenesis	1
Karyotype conservation and genomic organization of repetitive sequences in the leaf-cutting ant Atta cephalotes (Linnaeus, 1758) (Formicidae: Myrmicinae)	1
Characterization and molecular evolution analysis of Periploca forrestii inferred from its complete chloroplast genome sequence	1
Reducing the regulatory burden of plant biotechnology regulations in Canada	1
Rapid karyotypic evolution with high diploid number variation in a rare genus of bromeligenous frogs	1
The medaka fish Tol2 transposable element is in an early stage of decay: identification of a nonautonomous copy	1
Autophagy in cell fate decisions: knowledge gained fromDrosophila	1
Introgression of Thinopyrum elongatum DNA fragments carrying resistance to fusarium head blight into Triticum aestivum cultivar Chinese Spring is associated with alteration of gene expre	1
Chromosome identification of Medicago polymorpha by oligonucleotide-based FISH	1
Enriched tandem repeats in chromosomal fusion points of Rineloricaria latirostris (Boulenger, 1900) (Siluriformes: Loricariidae)	1
Cytogenetic characterization of solitary wasp Ancistrocerus flavomarginatus (Brèthes, 1906) (Hymenoptera, Vespidae) with insights into the chromosomal evolution in the genus	1
Uncovering the complexity of structural variants in four individuals with autism spectrum disorder	1
Transfer of fusarium head blight resistance from Thinopyrum elongatum to bread wheat cultivar Chinese Spring	1
Abundance of distal repetitive DNA sequences in Capsicum L. (Solanaceae) chromosomes	1
Assessing the accuracy of imputation in the Gyr breed using different SNP panels	1
Expression of defensin genes across house fly (Musca domestica) life history gives insight into immune system subfunctionalization	1
Runs of homozygosity assessment using reduced representation sequencing highlight the evidence of random mating in emu (Dromaius novaehollandiae)	1
Complete chloroplast genome of Gentianopsis barbata and comparative analysis with related species from Gentianaceae	1
Genome-wide identification of C2H2-type zinc finger gene family members and their expression during abiotic stress responses in orchardgrass (Dactylis glomerata)	1