OOIR: Observatory of International Research

Papers

(The median citation count of Genome is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Machine learning for precision medicine	168
Epigenetic regulation of ACE2, the receptor of the SARS-CoV-2 virus¹	52
Fungal species concepts in the genomics era	44
Epigenetic mechanisms influencing COVID-19	38
BIOSCAN: DNA barcoding to accelerate taxonomy and biogeography for conservation and sustainability	29
Insertions of mitochondrial DNA into the nucleus—effects and role in cell evolution	27
Gut microbiome-mediated epigenetic regulation of brain disorder and application of machine learning for multi-omics data analysis	25
Clubroot in Brassica: recent advances in genomics, breeding, and disease management	22
Plant DNA barcoding necessitates marker-specific efforts to establish more comprehensive reference databases	19
Fast-GBS v2.0: an analysis toolkit for genotyping-by-sequencing data	18
coil: an R package for cytochrome c oxidase I (COI) DNA barcode data cleaning, translation, and error evaluation	18
Genome-wide identification and characterization of WOX genes in Cucumis sativus	18
The chicken model organism for epigenomic research	17
Selection constraints determine preference for A/U-ending codons inTaxus contorta	17
Using DNA-barcoded Malaise trap samples to measure impact of a geothermal energy project on the biodiversity of a Costa Rican old-growth rain forest	17
Genome-wide association study provides insights into the genetic architecture of bone size and mass in chickens	17
Nematode biodiversity assessments need vouchered databases: A BOLD reference library for plant-parasitic nematodes in the superfamily Criconematoidea	14
Identification of lncRNAs in response to infection by Plasmodiophora brassicae in Brassica napus and development of lncRNA-based SSR markers	14
A study on non-synonymous mutational patterns in structural proteins of SARS-CoV-2	14
Taxonomic classification of the bacterial endosymbiont Wolbachia based on next-generation sequencing: is there molecular evidence for its presence in tardigrades?	13
Transcriptomic comparison of liver tissue between Anqing six-end-white pigs and Yorkshire pigs based on RNA sequencing	13
Time for a paradigm shift in the use of plant genetic resources	13
Cannabis, the multibillion dollar plant that no genebank wanted	13
Barcoding a can of worms: testing cox1 performance as a DNA barcode of Nematoda	12
Polymorphism of thePLIN1gene and its association with body measures and ultrasound carcass traits in Qinchuan beef cattle	12

Chloroplast genomes of seven species of Coryloideae (Betulaceae): structures and comparative analysis	11
Primate-specific histone variants	11
Drug discovery and chemical probing inDrosophila	11
Revisiting the evolution of the North American tetraploid treefrog (Hyla versicolor)	11
The mitogenome of a Malagasy butterfly Malaza fastuosus (Mabille, 1884) recovered from the holotype collected over 140 years ago adds support for a new subfamily of Hesperiidae (Lepidoptera)	11
Transcriptional enhancers: from prediction to functional assessment on a genome-wide scale	11
Genome-wide analysis of a putative lipid transfer protein LTP_2 gene family reveals CsLTP_2 genes involved in response of cucumber against root-knot nematode (Meloidogyne incognita)	10
DMSO and betaine significantly enhance the PCR amplification of ITS2 DNA barcodes from plants	10
Understanding the genetic relationships between Indonesian bambara groundnut landraces and investigating their origins	10
Analysis of the core genome and pangenome of Clostridium butyricum	10
Reflections on the organization and the physical state of chromatin in eukaryotic cells	10
The genetics ofCannabis—genomic variations of key synthases and their effect on cannabinoid content	9
Genomic regions associated with resistance to Fusarium wilt in castor identified through linkage and association mapping approaches	9
Signatures of selection analysis using whole-genome sequence data reveals novel candidate genes for pony and light horse types	9
Whole-genome sequencing association analysis reveals the genetic architecture of meat quality traits in Chinese Qingyu pigs	8
Multi-marker DNA metabarcoding reflects tardigrade diversity in different habitats	8
Transfer of fusarium head blight resistance from Thinopyrum elongatum to bread wheat cultivar Chinese Spring	8
Integration of mandarin (Citrus reticulata) cytogenetic map with its genome sequence	8
Baboon bearing resemblance in pigmentation pattern to Siamese cat carries a missense mutation in the tyrosinase gene	8
First records raise questions: DNA barcoding of Odonata in the middle of the Mediterranean	8
Distribution of FISH oligo-5S rDNA and oligo-(AGGGTTT)₃ in Hibiscus mutabilis L.	8
Full-length transcriptome analysis and identification of genes involved in asarinin and aristolochic acid biosynthesis in medicinal plant Asarum sieboldii	7
Adjusting extracellular pH to prevent entry of SARS-CoV-2 into human cells	7
DNA sequence-based mapping and comparative genomics of theStgenome ofPseudoroegneria spicata(Pursh) Á. Löve versus wheat (Triticum aestivumL.) and barley (Hordeum vulgareL.	7
Microbiomes of willow-galling sawflies: effects of host plant, gall type, and phylogeny on community structure and function	7
Versatile method to measure locomotion in adult Drosophila	7
In-vitro anti-fungal assay and association analysis reveal a role for the Pinus monticola PR10 gene (PmPR10-3.1) in quantitative disease resistance to white pine blister rust	7
Environmental DNA bioassays corroborate field data for detection of overwintering species at risk Blanding’s turtles (Emydoidea blandingii)	7
Alfalfa transcriptome profiling provides insight into miR156-mediated molecular mechanisms of heat stress tolerance	7
Genomics and bioinformatics capacity in Africa: no continent is left behind	7
Complex intragene deletion leads to oculocutaneous albinism in tanuki (Japanese raccoon dog)	7
Enriched tandem repeats in chromosomal fusion points of Rineloricaria latirostris (Boulenger, 1900) (Siluriformes: Loricariidae)	6
Development and characterization of Triticum turgidum – Aegilops comosa and T. turgidum – Ae. markgrafii amphidiploids	6
Extreme genetic diversity among springtails (Collembola) in subterranean calcretes of arid Australia	6
Genome-wide identification of bZIP transcription factor genes related to starch synthesis in barley (Hordeum vulgare L.)	6
Does variable epigenetic inheritance fuel plant evolution?	6
Origins and chromosome differentiation of Thinopyrum elongatum revealed by PepC and Pgk1 genes and ND-FISH	6
Molecular identification and DNA barcode screening of acaroid mites in ground flour dust	6
Molecular diversity and species delimitation in the family Gasteruptiidae (Hymenoptera: Evanioidea)	6
Karyotype structure and cytogenetic markers of Amoimyrmex bruchi and Amoimyrmex silvestrii: contribution to understanding leaf-cutting ant relationships	6
An endogenous retrovirus presumed to have been endogenized or relocated recently in a marsupial, the red-necked wallaby	6
Genotyping by sequencing for SNP marker development in onion	6
Complete chloroplast genome sequencing and comparative analysis reveals changes to the chloroplast genome after allopolyploidization in Cucumis	6
Characterization and expression of the Pirin gene family in Triticum aestivum	5
Sequence of Trypanosoma cruzi reference strain SC43 nuclear genome and kinetoplast maxicircle confirms a strong genetic structure among closely related parasite discrete typing units	5
The neonicotinoid insecticide thiamethoxam enhances expression of stress-response genes in Zea mays in an environmentally specific pattern	5
Comparative root transcriptome analysis of two soybean cultivars with different cadmium sensitivities reveals the underlying tolerance mechanisms	5
Karyotype mosaicism in early generation synthetic hexaploid wheats	5
Genetic diversity and ancestry of cacao (Theobroma cacaoL.) in Dominica revealed by single nucleotide polymorphism markers	5
Transcriptome-wide identification, characterization, and phylogenomic analysis of cytochrome P450s from Nothapodytes nimmoniana reveal candidate genes involved in the camptothecin biosynthetic	5

Introgression of Thinopyrum elongatum DNA fragments carrying resistance to fusarium head blight into Triticum aestivum cultivar Chinese Spring is associated with alteration of gene expre	5
The role of chromatin organizer Satb1 in shaping TCR repertoire in adult thymus	5
Advances in the cytogenetics of Annonaceae, the case of Annona cherimola L.	5
Genomics-based taxonomy to clarify cannabis classification	5
Characterization of HTATIP2 and its role during hair follicle cycles in Angora rabbit	5
Analysis and evaluation of different sequencing depths from 5 to 20 million reads in shotgun metagenomic sequencing, with optimal minimum depth being recommended	5
Genetic and biochemical variability among Moringa oleifera Lam. accessions collected from different agro-ecological zones	5
Karyotyping Dasypyrum breviaristatum chromosomes with multiple oligonucleotide probes reveals the genomic divergence in Dasypyrum	5
Advances in visualizing transcription factor – DNA interactions	4
Marsupial satellite DNA as faithful reflections of long-terminal repeat retroelement structure	4
Homologous chromosome pairing in meiosis of higher eukaryotes—still an enigma?	4
Environmental DNA detection of endangered and invasive species in Kejimkujik National Park and Historic Site	4
Genome sequence of Aspergillus flavus A7, a marine-derived fungus with antibacterial activity	4
Identification and expression analysis of chloroplast ribonucleoproteins (cpRNPs) in Arabidopsis and rice	4
Genome organization of major tandem repeats and their specificity for heterochromatin of macro- and microchromosomes in Japanese quail	4
Origin and evolution of highly polymorphic rDNA sites in Alstroemeria longistaminea (Alstroemeriaceae) and related species	4
Identification of a novel differentially methylated region adjacent to ATG16L2 in lung cancer cells using methyl-CpG binding domain protein-enriched genome sequencing	4
First DNA sequence reference library for mammals and plants of the Eastern Mediterranean Region	4
Speciation and changes in male gene expression inDrosophila	4
An 82 bp tandem repeat family typical of 3′ non-coding end of Gypsy/TAT LTR retrotransposons is conserved in Coffea spp. pericentromeres	4
Transcriptome analysis reveals genes potentially related to high fiber strength in a Gossypium hirsutum line IL9 with Gossypium mustelinum introgression	3
Transcriptome profiling of differentially expressed genes of male and female inflorescences in spinach (Spinacia oleracea L.)	3
The importance of DNA barcode choice in biogeographic analyses — a case study on marine midges of the genus Clunio	3
SmFLS negatively regulates peel coloring of eggplant (Solanum melongena) under high temperature	3
Proteomic and lipidomics analyses of high fatty acid AhDGAT3 transgenic soybean reveals the key lipase gene associated with the lipid internal mechanism	3
Genome-wide characterization of the PDI gene family in Medicago truncatula and their roles in response to endoplasmic reticulum stress	3
Aeromonas salmonicida isolates from Canada demonstrate wide distribution and clustering among mesophilic strains	3
Genome-wide identification of C2H2-type zinc finger gene family members and their expression during abiotic stress responses in orchardgrass (Dactylis glomerata)	3
Identification of novel candidate of brown planthopper resistance gene Bph44 in rice (Oryza sativa L.)	3
Genetic diversity and phylogenetic relationships of threadfin breams (Nemipterus spp.) from the Red Sea and eastern Mediterranean Sea	3
Genetic diversity of Asian and European common wheat lines assessed by fluorescence in situ hybridization	3
Identification of potential proteases for abdominal aortic aneurysm by weighted gene coexpression network analysis	3
Transposable element landscapes illuminate past evolutionary events in the endangered fern Vandenboschia speciosa	3
Comparative genomics of the Pasteurella multocida toxin	3
Identification and characterization of heat-responsive microRNAs at the booting stage in two rice varieties, 9311 and Nagina 22	3
miR-181a-5p is a potential candidate epigenetic biomarker in multiple sclerosis	3
The plastome of Arctic Oxytropis arctobia (Fabaceae) is significantly different from that of O. splendens and other related species	3
Molecular confirmation of varietal status in bottle gourd (Lagenaria siceraria) using genotyping-by-sequencing	3
Use of species delimitation approaches to tackle the cryptic diversity of an assemblage of high Andean butterflies (Lepidoptera: Papilionoidea)	3
The production of wheat – Aegilops sharonensis 1S^sh chromosome substitution lines harboring alien novel high-molecular-weight glutenin subunits	3
Intraspecific variations of the cytoplasmic male sterility genes orf108 and orf117 in Brassica maurorum and Moricandia arvensis, and the specificity of the mRNA processing	2
High nucleotide similarity of three Copia lineage LTR retrotransposons among plant genomes	2
Identification of key genes and pathways associated with duck (Anas platyrhynchos) embryonic skin development using weighted gene co-expression network analysis	2
Genomic DNA methylation analysis reveals that BLNK is a key potential gene in the regulation of autophagy-related thyroid cancer progression	2
A high-resolution consensus linkage map for barley based on GBS-derived genotypes	2
Chromosomes in the African frog genus Tomopterna (Pyxicephalidae) and probing the origin of tetraploid Tomopterna tandyi	2
DNA barcode analysis of the endangered green turtle (Chelonia mydas) in Mexico¹	2
Broad histone H4 monomethylation marks expressed genes involved in translation	2
Identification of enhancers that drive the spatially restricted expression ofVsx1andRxin the outer proliferation center of the developingDrosophilaoptic lobe	2
Genome-wide investigation and expression analysis of the AP2/ERF family for selection of agarwood-related genes in Aquilaria sinensis (Lour.) Gilg	2
Identification and expression analysis of C2H2-zinc finger protein genes reveals their role in stress tolerance in Brassica napus	2
Identification of the 12-oxophytoeienoic acid reductase (OPR) gene family in pepper (Capsicum annuum L.) and functional characterization of CaOPR6 in pepper fruit development and	2
The construction of a high-density consensus genetic map for soybean based on SNP markers derived from genotyping-by-sequencing	2
Evidence for hexasomic inheritance in Chrysanthemum morifolium Ramat. based on analysis of EST-SSR markers	2
Patterns of genome size evolution versus fraction of repetitive elements in statu nascendi species: the case of the willistoni subgroup of Drosophila (Diptera, Drosophilidae)	2
Overexpressed Gliotactin activates BMP signaling through interfering with the Tkv–Dad association	2
Genes underlying species differences in cuticular hydrocarbon production betweenDrosophila melanogasterandD. simulans	2
Gynogenetic diploids, tetraploids, or octoploids, and a path to polyploidy in anuran amphibians	2
Molecular analysis of nematode-responsive defence genes CRF1, WRKY45, and PR7 in Solanum lycopersicum tissues during the infection of plant-parasitic nematode species of th	2
A complement to DNA barcoding reference library for identification of fish from the Northeast Pacific	2
Lack of variation in nuclear DNA content in avian muscle	2
Differences between predicted outer membrane proteins of Pasteurella multocida, Histophilus somni, and genotype 1 and 2 Mannheimia haemolytica strains isolated from cattle	2
Genomic inversions in Escherichia coli alter gene expression and are associated with nucleoid protein binding sites	2
Genes and proteins associated with ribeye area and meat tenderness in a commercial Nellore cattle population	2
Comparative mapping of a new repetitive DNA sequence and chromosome region-specific probes unveiling rearrangements in an Amazonian frog complex	2
Differentiation of Lingxiaohua and Yangjinhua by chloroplast genome sequencing and DNA barcoding markers	2
Generation and molecular marker and cytological characterization of wheat – Secale strictum subsp. anatolicum derivatives	2
Molecular phylogeny of the Ficus virens complex (Moraceae)	2
Using telomeric length measurements and methylation to understand the karyotype diversification of Ctenomys minutus (a small fossorial mammal)	2