OOIR: Observatory of International Research

Papers

(The median citation count of Genome is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Machine learning for precision medicine	227
Epigenetic regulation of ACE2, the receptor of the SARS-CoV-2 virus¹	57
Epigenetic mechanisms influencing COVID-19	41
Gut microbiome-mediated epigenetic regulation of brain disorder and application of machine learning for multi-omics data analysis	32
BIOSCAN: DNA barcoding to accelerate taxonomy and biogeography for conservation and sustainability	30
Clubroot in Brassica: recent advances in genomics, breeding, and disease management	29
Fast-GBS v2.0: an analysis toolkit for genotyping-by-sequencing data	24
Plant DNA barcoding necessitates marker-specific efforts to establish more comprehensive reference databases	21
The chicken model organism for epigenomic research	19
Genome-wide identification and characterization of WOX genes in Cucumis sativus	18
Identification of lncRNAs in response to infection byPlasmodiophora brassicaeinBrassica napusand development of lncRNA-based SSR markers	17
Taxonomic classification of the bacterial endosymbiont Wolbachia based on next-generation sequencing: is there molecular evidence for its presence in tardigrades?	16
Nematode biodiversity assessments need vouchered databases: A BOLD reference library for plant-parasitic nematodes in the superfamily Criconematoidea	16
Cannabis, the multibillion dollar plant that no genebank wanted	15
A study on non-synonymous mutational patterns in structural proteins of SARS-CoV-2	15
Primate-specific histone variants	14
Multi-marker DNA metabarcoding reflects tardigrade diversity in different habitats	14
Barcoding a can of worms: testing cox1 performance as a DNA barcode of Nematoda	14
DMSO and betaine significantly enhance the PCR amplification of ITS2 DNA barcodes from plants	13
Transcriptional enhancers: from prediction to functional assessment on a genome-wide scale	13
The genetics ofCannabis—genomic variations of key synthases and their effect on cannabinoid content	12
Genomics and bioinformatics capacity in Africa: no continent is left behind	12
Analysis of the core genome and pangenome of Clostridium butyricum	12
Revisiting the evolution of the North American tetraploid treefrog (Hyla versicolor)	11
Karyotype structure and cytogenetic markers of Amoimyrmex bruchi and Amoimyrmex silvestrii: contribution to understanding leaf-cutting ant relationships	11

Reflections on the organization and the physical state of chromatin in eukaryotic cells	11
Genomics-based taxonomy to clarify cannabis classification	11
Drug discovery and chemical probing inDrosophila	10
In-vitro anti-fungal assay and association analysis reveal a role for the Pinus monticola PR10 gene (PmPR10-3.1) in quantitative disease resistance to white pine blister rust	10
Distribution of FISH oligo-5S rDNA and oligo-(AGGGTTT)₃ in Hibiscus mutabilis L.	10
Genomic regions associated with resistance to Fusarium wilt in castor identified through linkage and association mapping approaches	10
Enriched tandem repeats in chromosomal fusion points of Rineloricaria latirostris (Boulenger, 1900) (Siluriformes: Loricariidae)	9
Transfer of fusarium head blight resistance from Thinopyrum elongatum to bread wheat cultivar Chinese Spring	9
Origins and chromosome differentiation of Thinopyrum elongatum revealed by PepC and Pgk1 genes and ND-FISH	9
Introgression of Thinopyrum elongatum DNA fragments carrying resistance to fusarium head blight into Triticum aestivum cultivar Chinese Spring is associated with alteration of gene expre	8
Alfalfa transcriptome profiling provides insight into miR156-mediated molecular mechanisms of heat stress tolerance	8
Genome-wide identification of bZIP transcription factor genes related to starch synthesis in barley (Hordeum vulgare L.)	8
Environmental DNA bioassays corroborate field data for detection of overwintering species at risk Blanding’s turtles (Emydoidea blandingii)	8
First records raise questions: DNA barcoding of Odonata in the middle of the Mediterranean	8
Molecular diversity and species delimitation in the family Gasteruptiidae (Hymenoptera: Evanioidea)	8
Full-length transcriptome analysis and identification of genes involved in asarinin and aristolochic acid biosynthesis in medicinal plant Asarum sieboldii	8
Microbiomes of willow-galling sawflies: effects of host plant, gall type, and phylogeny on community structure and function	8
Genotyping by sequencing for SNP marker development in onion	8
Versatile method to measure locomotion in adult Drosophila	8
Genetic diversity and ancestry of cacao (Theobroma cacaoL.) in Dominica revealed by single nucleotide polymorphism markers	7
Adjusting extracellular pH to prevent entry of SARS-CoV-2 into human cells	7
Comparative root transcriptome analysis of two soybean cultivars with different cadmium sensitivities reveals the underlying tolerance mechanisms	6
Characterization and expression of the Pirin gene family in Triticum aestivum	6
Genome organization of major tandem repeats and their specificity for heterochromatin of macro- and microchromosomes in Japanese quail	6
The neonicotinoid insecticide thiamethoxam enhances expression of stress-response genes in Zea mays in an environmentally specific pattern	6
An endogenous retrovirus presumed to have been endogenized or relocated recently in a marsupial, the red-necked wallaby	6
Extreme genetic diversity among springtails (Collembola) in subterranean calcretes of arid Australia	6
Molecular identification and DNA barcode screening of acaroid mites in ground flour dust	6
Genome-wide identification of C2H2-type zinc finger gene family members and their expression during abiotic stress responses in orchardgrass (Dactylis glomerata)	6
SmFLS negatively regulates peel coloring of eggplant (Solanum melongena) under high temperature	6
Complete chloroplast genome sequencing and comparative analysis reveals changes to the chloroplast genome after allopolyploidization in Cucumis	6
Identification of the 12-oxophytoeienoic acid reductase (OPR) gene family in pepper (Capsicum annuum L.) and functional characterization of CaOPR6 in pepper fruit development and	5
Comparative genomics of the Pasteurella multocida toxin	5
Karyotyping Dasypyrum breviaristatum chromosomes with multiple oligonucleotide probes reveals the genomic divergence in Dasypyrum	5
miR-181a-5p is a potential candidate epigenetic biomarker in multiple sclerosis	5
Marsupial satellite DNA as faithful reflections of long-terminal repeat retroelement structure	5
An 82 bp tandem repeat family typical of 3′ non-coding end of Gypsy/TAT LTR retrotransposons is conserved in Coffea spp. pericentromeres	5
Analysis and evaluation of different sequencing depths from 5 to 20 million reads in shotgun metagenomic sequencing, with optimal minimum depth being recommended	5
Aeromonas salmonicida isolates from Canada demonstrate wide distribution and clustering among mesophilic strains	5
Identification and expression analysis of chloroplast ribonucleoproteins (cpRNPs) in Arabidopsis and rice	5
Differentiation of Lingxiaohua and Yangjinhua by chloroplast genome sequencing and DNA barcoding markers	5
Genes influencing deposition of melanin in breast muscle of the Xuefeng black bone chicken based on bioinformatic analysis	5
Genome-wide characterization of the PDI gene family in Medicago truncatula and their roles in response to endoplasmic reticulum stress	5
The role of chromatin organizer Satb1 in shaping TCR repertoire in adult thymus	5
Evidence for hexasomic inheritance in Chrysanthemum morifolium Ramat. based on analysis of EST-SSR markers	5
Karyotype conservation and genomic organization of repetitive sequences in the leaf-cutting ant Atta cephalotes (Linnaeus, 1758) (Formicidae: Myrmicinae)	5
Transcriptome profiling of differentially expressed genes of male and female inflorescences in spinach (Spinacia oleracea L.)	5
Molecular confirmation of varietal status in bottle gourd (Lagenaria siceraria) using genotyping-by-sequencing	5
Environmental DNA detection of endangered and invasive species in Kejimkujik National Park and Historic Site	5
Transcriptome-wide identification, characterization, and phylogenomic analysis of cytochrome P450s from Nothapodytes nimmoniana reveal candidate genes involved in the camptothecin biosynthetic	4

Identification and expression analysis of C2H2-zinc finger protein genes reveals their role in stress tolerance in Brassica napus	4
Genome sequence of Aspergillus flavus A7, a marine-derived fungus with antibacterial activity	4
Speciation and changes in male gene expression inDrosophila	4
The plastome of ArcticOxytropis arctobia(Fabaceae) is significantly different from that ofO. splendensand other related species	4
Characterization of the chloroplast genome of medicinal herb Polygonatum cyrtonema and identification of molecular markers by comparative analysis	4
Advances in visualizing transcription factor – DNA interactions	4
Generation and molecular marker and cytological characterization of wheat – Secale strictum subsp. anatolicum derivatives	4
First DNA sequence reference library for mammals and plants of the Eastern Mediterranean Region	4
Intraspecific variations of the cytoplasmic male sterility genes orf108 and orf117 in Brassica maurorum and Moricandia arvensis, and the specificity of the mRNA processing	4
Genes and proteins associated with ribeye area and meat tenderness in a commercial Nellore cattle population	4
Origin and evolution of highly polymorphic rDNA sites in Alstroemeria longistaminea (Alstroemeriaceae) and related species	4
Transposable element landscapes illuminate past evolutionary events in the endangered fern Vandenboschia speciosa	3
Cytogenetic characterization of solitary wasp Ancistrocerus flavomarginatus (Brèthes, 1906) (Hymenoptera, Vespidae) with insights into the chromosomal evolution in the genus	3
Identification and characterization of heat-responsive microRNAs at the booting stage in two rice varieties, 9311 and Nagina 22	3
Identification of alternative splicing and RNA-binding proteins involved in myocardial ischemia–reperfusion injury	3
Transcriptional responses to water stress and recovery in a drought-tolerant fescue wild grass (Festuca ovina; Poaceae)	3
Cytogenetic characterization and karyotype evolution in six Macroptilium species (Leguminosae)	3
Genetic diversity and phylogenetic relationships of threadfin breams (Nemipterus spp.) from the Red Sea and eastern Mediterranean Sea	3
High nucleotide similarity of three Copia lineage LTR retrotransposons among plant genomes	3
Transcriptome analysis reveals genes potentially related to high fiber strength in a Gossypium hirsutum line IL9 with Gossypium mustelinum introgression	3
A high-resolution consensus linkage map for barley based on GBS-derived genotypes	3
Identification of novel candidate of brown planthopper resistance gene Bph44 in rice (Oryza sativa L.)	3
Genetic diversity of Asian and European common wheat lines assessed by fluorescence in situ hybridization	3
Identification of enhancers that drive the spatially restricted expression ofVsx1andRxin the outer proliferation center of the developingDrosophilaoptic lobe	3
Proteomic and lipidomics analyses of high fatty acid AhDGAT3 transgenic soybean reveals the key lipase gene associated with the lipid internal mechanism	3
Use of species delimitation approaches to tackle the cryptic diversity of an assemblage of high Andean butterflies (Lepidoptera: Papilionoidea)	3
Differences between predicted outer membrane proteins of Pasteurella multocida, Histophilus somni, and genotype 1 and 2 Mannheimia haemolytica strains isolated from cattle	3
Genomic inversions in Escherichia coli alter gene expression and are associated with nucleoid protein binding sites	3
Fingerprint construction through genotyping by sequencing for applied breeding in Brassica rapa	3
Patterns of genome size evolution versus fraction of repetitive elements in statu nascendi species: the case of the willistoni subgroup of Drosophila (Diptera, Drosophilidae)	3
The importance of DNA barcode choice in biogeographic analyses — a case study on marine midges of the genus Clunio	3
Autophagy in cell fate decisions: knowledge gained fromDrosophila	3
Molecular analysis of nematode-responsive defence genes CRF1, WRKY45, and PR7 in Solanum lycopersicum tissues during the infection of plant-parasitic nematode species of th	3
Broad histone H4 monomethylation marks expressed genes involved in translation	3
Identification of potential proteases for abdominal aortic aneurysm by weighted gene coexpression network analysis	3
Identification of key genes and pathways associated with duck (Anas platyrhynchos) embryonic skin development using weighted gene co-expression network analysis	2
A complement to DNA barcoding reference library for identification of fish from the Northeast Pacific	2
Genomic DNA methylation analysis reveals that BLNK is a key potential gene in the regulation of autophagy-related thyroid cancer progression	2
Dysregulation of chromatin organization in pediatric and adult brain tumors: oncoepigenomic contributions to tumorigenesis and cancer stem cell properties	2
Chromosomes in the African frog genus Tomopterna (Pyxicephalidae) and probing the origin of tetraploid Tomopterna tandyi	2
Comparative plastomes of species from Phrymaceae and Mazaceae: insights into adaptive evolution, codon usage bias, and phylogenetic relationships	2
Gynogenetic diploids, tetraploids, or octoploids, and a path to polyploidy in anuran amphibians	2
Chromosome painting reveals the genomic structure of three polyploid species of Ipomoea	2
Using telomeric length measurements and methylation to understand the karyotype diversification of Ctenomys minutus (a small fossorial mammal)	2
Pig fetal skeletal muscle development is associated with genome-wide DNA hypomethylation and corresponding alterations in transcript and microRNA expression	2
The construction of a high-density consensus genetic map for soybean based on SNP markers derived from genotyping-by-sequencing	2
Satellite DNAs, heterochromatin, and sex chromosomes of the wattled jacana (Charadriiformes; Jacanidae): a species with highly rearranged karyotype	2
Comparative mapping of a new repetitive DNA sequence and chromosome region-specific probes unveiling rearrangements in an Amazonian frog complex	2
Assessing the accuracy of imputation in the Gyr breed using different SNP panels	2
Assessing population genetic structure of three New Zealand stream insects using mitochondrial and nuclear DNA markers	2
Molecular phylogeny of the Ficus virens complex (Moraceae)	2
Genome-wide investigation and expression analysis of the AP2/ERF family for selection of agarwood-related genes in Aquilaria sinensis (Lour.) Gilg	2
Lack of variation in nuclear DNA content in avian muscle	2
NRAS promotes the proliferation of melanocytes to increase melanin deposition in Rex rabbits	2
DNA barcode analysis of the endangered green turtle (Chelonia mydas) in Mexico¹	2
Overexpressed Gliotactin activates BMP signaling through interfering with the Tkv–Dad association	2
Genes underlying species differences in cuticular hydrocarbon production betweenDrosophila melanogasterandD. simulans	2
Abundance of distal repetitive DNA sequences in Capsicum L. (Solanaceae) chromosomes	2
Whole-genome comparative analysis reveals genetic mechanisms of disease resistance and heat tolerance of tropicalBos indicuscattle breeds	2
Comparative analysis reveals chromosome number reductions in the evolution of African bermudagrass (Cynodon transvaalensisBurtt-Davy)	2