OOIR: Observatory of International Research

Papers

(The median citation count of Genome is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-02-01 to 2025-02-01.)

Article	Citations
Patterns of stability and change in the maize genome: a case study of small RNA transcriptomes in two recombinant inbred lines and their progenitors	254
Authentication of garlic (Allium sativum L.) supplements using a trnL^UAA mini-barcode	57
Correction: Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation	41
Complete chloroplast genome sequencing and comparative analysis reveals changes to the chloroplast genome after allopolyploidization in Cucumis	40
Genome organization of major tandem repeats and their specificity for heterochromatin of macro- and microchromosomes in Japanese quail	33
Genomics and bioinformatics capacity in Africa: no continent is left behind	29
Fine mapping of a major QTL qPA7-1 for low hydrocyanic acid content in sorghum–sudangrass hybrid	22
Genome-wide investigation and expression analysis of the AP2/ERF family for selection of agarwood-related genes in Aquilaria sinensis (Lour.) Gilg	19
Determination of reverse transcriptase inhibitor resistance mutations in HIV-1 infected children in Côte d’Ivoire	18
Molecular identification and DNA barcode screening of acaroid mites in ground flour dust	17
Genome-wide characterization of the PDI gene family in Medicago truncatula and their roles in response to endoplasmic reticulum stress	16
Nematode biodiversity assessments need vouchered databases: A BOLD reference library for plant-parasitic nematodes in the superfamily Criconematoidea	16
Molecular diversity and species delimitation in the family Gasteruptiidae (Hymenoptera: Evanioidea)	15
Genome-wide identification of bZIP transcription factor genes related to starch synthesis in barley (Hordeum vulgare L.)	15
An 82 bp tandem repeat family typical of 3′ non-coding end of Gypsy/TAT LTR retrotransposons is conserved in Coffea spp. pericentromeres	15
Mitogenome evolution in Trichoderma afroharzianum strains: for a better understanding of distinguishing genus	14
Fragments derived from non-coding RNAs: how complex is genome regulation?	13
Note of appreciation	13
Using telomeric length measurements and methylation to understand the karyotype diversification of Ctenomys minutus (a small fossorial mammal)	12
Marsupial satellite DNA as faithful reflections of long-terminal repeat retroelement structure	12
Comparative analysis reveals chromosome number reductions in the evolution of African bermudagrass (Cynodon transvaalensisBurtt-Davy)	12
DMSO and betaine significantly enhance the PCR amplification of ITS2 DNA barcodes from plants	11
Structure and genetic diversity of Canadian Maritimes wild hops	11
In-vitro anti-fungal assay and association analysis reveal a role for the Pinus monticola PR10 gene (PmPR10-3.1) in quantitative disease resistance to white pine blister rust	10
Environmental DNA detection of endangered and invasive species in Kejimkujik National Park and Historic Site	10

Chromosome painting reveals the genomic structure of three polyploid species of Ipomoea	10
Primate-specific histone variants	10
Reflections on the organization and the physical state of chromatin in eukaryotic cells	9
Clubroot in Brassica: recent advances in genomics, breeding, and disease management	9
A study on non-synonymous mutational patterns in structural proteins of SARS-CoV-2	9
Identification of full-length genes involved in the biosynthesis of β-caryophyllene and lupeol from the leaf transcriptome of Ayapana triplinervis	8
Use of species delimitation approaches to tackle the cryptic diversity of an assemblage of high Andean butterflies (Lepidoptera: Papilionoidea)	8
Sequence-based Identification of Polyamine Oxidase Genes in Sorghum bicolor L.	8
Versatile method to measure locomotion in adult Drosophila	8
Whole-genome comparative analysis reveals genetic mechanisms of disease resistance and heat tolerance of tropicalBos indicuscattle breeds	8
The complete chloroplast genome of Aristolochia fangchi provided insights into the phylogeny and species identification of Aristolochia	8
Karyotype Evolution of Suliformes and Description of a ♂Z1Z1Z2Z2/♀Z1Z2W Multiple Sex Chromosome System in boobies (Sula spp.)	8
Broad histone H4 monomethylation marks expressed genes involved in translation	8
Genome Publication Awards 2021	8
The role ofPeroxin 7duringDrosophilaembryonic development	8
Asp/ASPM phospho-regulation throughout the cell cycle	8
Transcriptional enhancers: from prediction to functional assessment on a genome-wide scale	7
Extreme genetic diversity among springtails (Collembola) in subterranean calcretes of arid Australia	6
Genetic diversity and phylogenetic relationships of threadfin breams (Nemipterus spp.) from the Red Sea and eastern Mediterranean Sea	6
BIOSCAN: DNA barcoding to accelerate taxonomy and biogeography for conservation and sustainability	6
Gynogenetic diploids, tetraploids, or octoploids, and a path to polyploidy in anuran amphibians	6
DNA barcodes and new primers for nature’s pest controllers: the social wasps	6
Characterization and expression of the Pirin gene family in Triticum aestivum	6
Proteomic and lipidomics analyses of high fatty acid AhDGAT3 transgenic soybean reveals the key lipase gene associated with the lipid internal mechanism	6
Molecular analysis of nematode-responsive defence genes CRF1, WRKY45, and PR7 in Solanum lycopersicum tissues during the infection of plant-parasitic nematode species of th	6
Assessing population genetic structure of three New Zealand stream insects using mitochondrial and nuclear DNA markers	5
Gut microbiome-mediated epigenetic regulation of brain disorder and application of machine learning for multi-omics data analysis	5
Autophagy in cell fate decisions: knowledge gained fromDrosophila	5
Distinct patterns of satDNA distribution in holocentric chromosomes of spike-sedges (Eleocharis, Cyperaceae)	5
SmFLS negatively regulates peel coloring of eggplant (Solanum melongena) under high temperature	5
Comparative satellite DNA mapping in species of the genus Prochilodus (Teleostei, Characiformes) and its evolutionary implications	5
Insights on mauritiana-like elements diversity in Mayetiola destructor and M. hordei (Diptera: Cecidomyiidae)	5
Genomic regions associated with resistance to Fusarium wilt in castor identified through linkage and association mapping approaches	5
Cytogenetic characterization and karyotype evolution in six Macroptilium species (Leguminosae)	5
Abundance of distal repetitive DNA sequences in Capsicum L. (Solanaceae) chromosomes	5
Identification of enhancers that drive the spatially restricted expression ofVsx1andRxin the outer proliferation center of the developingDrosophilaoptic lobe	5
Comparative plastomes of species from Phrymaceae and Mazaceae: insights into adaptive evolution, codon usage bias, and phylogenetic relationships	5
The chicken model organism for epigenomic research	5
Genetic diversity of Asian and European common wheat lines assessed by fluorescence in situ hybridization	5
Note of appreciation	5
Peroxisome inter-organelle cooperation in Drosophila	5
The plastome of ArcticOxytropis arctobia(Fabaceae) is significantly different from that ofO. splendensand other related species	4
The repetitive DNA landscape in the ‘brizantha’ agamic complex of Urochloa P. Beauv.	4
Empowering canine genomics: Design and validation of a High-Density SNP array for Indian dogs	4
Linking the spatial and genomic structure of adaptive potential for conservation management: a review	4
Zebrafish optineurin: genomic organization and transcription regulation	4
Development and application of whole-chromosome painting of chromosomes 7A and 8A of Arachis duranensis based on chromosome-specific single-copy oligonucleotides	4
Stabilizing selection and mitochondrial heteroplasmy in the Canada lynx (Lynx canadensis)	4
An endogenous retrovirus presumed to have been endogenized or relocated recently in a marsupial, the red-necked wallaby	4
The genetics ofCannabis—genomic variations of key synthases and their effect on cannabinoid content	3

Reduced representation bisulfite sequencing (RRBS) analysis reveals variation in distribution and levels of DNA methylation in white birch (Betula papyrifera) exposed to nickel	3
Special issue on Genome Biology jointly published by Genome and Biochemistry and Cell Biology	3
Meta-analyses of the global multilocus genotypes of the human pathogen Campylobacter jejuni	3
Frequency of cytosine methylation in the adjacent regions of soybean retrotransposon SORE-1 depends on chromosomal location	3
Transfer of fusarium head blight resistance from Thinopyrum elongatum to bread wheat cultivar Chinese Spring	3
The importance of DNA barcode choice in biogeographic analyses — a case study on marine midges of the genus Clunio	3
Origins and chromosome differentiation of Thinopyrum elongatum revealed by PepC and Pgk1 genes and ND-FISH	3
DNA barcoding of southern African mammal species and construction of a reference library for forensic application	3
Half-chromatid mutation as a possible cause of mosaic males and females in Hymenoptera and rare fertile male tortoiseshell cats	3
Frequent numerical and structural chromosome changes in early generations of synthetic hexaploid wheat	3
Adjusting extracellular pH to prevent entry of SARS-CoV-2 into human cells	3
Assessing the accuracy of imputation in the Gyr breed using different SNP panels	3
Molecular characterization of a novel mutation in the E1 flowering gene induced by gamma irradiation in soybean	3
High-density linkage maps detail sex-specific regions of suppressed recombination near fusions of polymorphic chromosomes in purebred and hybrid North American Atlantic salmon (Salmo salar L.)	3
Genes underlying species differences in cuticular hydrocarbon production betweenDrosophila melanogasterandD. simulans	3
Diversity and antigenic potentials of Mycoplasmopsis bovis secreted and outer membrane proteins within a core genome of strains isolated from North American bison and cattle	3
Identification of novel candidate of brown planthopper resistance gene Bph44 in rice (Oryza sativa L.)	3
Origin and evolution of highly polymorphic rDNA sites in Alstroemeria longistaminea (Alstroemeriaceae) and related species	3
Differential DNA methylation analysis reveals key genes in Chinese Qingyu and Landrace pigs	3
Rapid karyotypic evolution with high diploid number variation in a rare genus of bromeligenous frogs	3
Genes influencing deposition of melanin in breast muscle of the Xuefeng black bone chicken based on bioinformatic analysis	2
miR-181a-5p is a potential candidate epigenetic biomarker in multiple sclerosis	2
Cannabis, the multibillion dollar plant that no genebank wanted	2
Comparative analysis of transposable elements dynamics in fish with different sex chromosome systems	2
Identification of lncRNAs in response to infection byPlasmodiophora brassicaeinBrassica napusand development of lncRNA-based SSR markers	2
The treatment of SARS-CoV2 with antivirals and mitigation of the cytokine storm syndrome: the role of gene expression	2
A species-specific digital PCR assay for the endangered blue racer (Coluber constrictor foxii) in Canada	2
Special issue of selected papers from the 15th Canadian Drosophila Research Conference, CANFLY XV 2019, held in Toronto, Ontario, Canada, on 9–13 June 2019	2
Identification of alternative splicing and RNA-binding proteins involved in myocardial ischemia–reperfusion injury	2
Analysis of the winter oilseed rape recombination landscape suggests maternal–paternal bias	2
Environmental drivers behind the genetic differentiation in mountain chickadees (Poecile gambeli)	2
Genomics-based taxonomy to clarify cannabis classification	2
Whole Genome Sequencing and Analysis of Benzo(a)pyrene Degrading Bacteria Bacillus cereus M72-4	2
Molecular characterization and functional analysis of the lysosomal cathepsin D-like gene in red swamp crayfish, Procambarus clarkii	2
The medaka fish Tol2 transposable element is in an early stage of decay: identification of a nonautonomous copy	2
Chromosome mapping of retrotransposon AviRTE in a neotropical bird species: Trogon surrucura (Trogoniformes; Trogonidae)	2
Chromosomal and genomic analysis suggests single origin and high molecular differentiation of the B chromosome of Abracris flavolineata	2
Comparative genomic and phylogenetic analysis of the complete mitochondrial genome of Cricula trifenestrata (Helfer) among lepidopteran insects	2
Mapping of quantitative trait loci (QTL) in Brassica napus L. for tolerance to water stress	2
First records raise questions: DNA barcoding of Odonata in the middle of the Mediterranean	2
Uncovering the complexity of structural variants in four individuals with autism spectrum disorder	2
Introduction: CANFLY XV 2019	2
Overexpressed Gliotactin activates BMP signaling through interfering with the Tkv–Dad association	2
Transcriptome profiling of differentially expressed genes of male and female inflorescences in spinach (Spinacia oleracea L.)	2
Expression of defensin genes across house fly (Musca domestica) life history gives insight into immune system subfunctionalization	2