Genetic Epidemiology

Article	Citations
A Brief History behind the journal Genetic Epidemiology and the International Genetic Epidemiology Society	377
Are trait‐associated genes clustered together in a gene network?	142
Statistics to prioritize rare variants in family‐based sequencing studies with disease subtypes	52
Outcome and Exposure Polygenic Risk Scores Can Help Reduce Information Bias and Selection Bias in Regression Estimates From Biobank Data	27
A gene‐based association test of interactions for maternal–fetal genotypes identifies genes associated with nonsyndromic congenital heart defects	17
MELODY: Mediation Analysis in Logistic Regression for High‐Dimensional Mediators and a Binary Outcome	16
A Novel One‐Sample Mendelian Randomization Approach for Count‐Type Outcomes That Is Robust to Correlated and Uncorrelated Pleiotropic Effects	16
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Bias and mean squared error in Mendelian randomization with invalid instrumental variables	15
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Integrative Harmonization of Phenotypic and Genomic Data Improves Bone Mineral Density Prediction in Multi‐Study Osteoporosis Research	10
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A Robust Association Test Leveraging Unknown Genetic Interactions: Application to Cystic Fibrosis Lung Disease	7
Causation and familial confounding as explanations for the associations of polygenic risk scores with breast cancer: Evidence from innovative ICE FALCON and ICE CRISTAL analyses	7
Gene‐level association analysis of bivariate ordinal traits with functional regressions	7
Uncovering Ethnicity‐Specific Recessive Loci for Alzheimer's Disease in 89 Dominican Families Using Family‐Based WGS Analysis	6
Multivariate analysis of a missense variant in CREBRF reveals associations with measures of adiposity in people of Polynesian ancestries	6
Multivariable MR Can Mitigate Bias in Two‐Sample MR Using Covariable‐Adjusted Summary Associations	6
Effect of case and control definitions on genome‐wide association study (GWAS) findings	6
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Sensitivity analyses gain relevance by fixing parameters observable during the empirical analyses	5
Investigating the prediction of CpG methylation levels from SNP genotype data to help elucidate relationships between methylation, gene expression and complex traits	5
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Structured testing of genetic association with mixed clinical outcomes	4
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Ethical, Legal, and Social Implications of Gene‐Environment Interaction Research	4
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Methods for large‐scale single mediator hypothesis testing: Possible choices and comparisons	4
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A Mixed‐Effect Kernel Machine Regression Model for Integrative Analysis of Alpha Diversity in Microbiome Studies	4
Correction to “Multivariable MR Can Mitigate Bias in Two‐Sample MR Using Covariable‐Adjusted Summary Associations”	4
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Meta‐analysis of breast cancer risk for individuals with PALB2 pathogenic variants	3
Phenotypic variance partitioning by transcriptomic gene expression levels and environmental variables for anthropometric traits using GTEx data	3
Genetic Associations of Persistent Opioid Use After Surgery Point to OPRM1 but Not Other Opioid‐Related Loci as the Main Driver of Opioid Use Disorder	3
Bayesian Effect Size Ranking to Prioritise Genetic Risk Variants in Common Diseases for Follow‐Up Studies	3
simmrd: An open‐source tool to perform simulations in Mendelian randomization	3
Parent‐of‐Origin Effects in Childhood Asthma at Seven Years of Age	3
Genome‐Wide Association Analyses in Family Triads and Dyads Following Assisted Reproductive Technology	3
Dimension Reduction Using Local Principal Components for Regression‐Based Multi‐SNP Analysis in 1000 Genomes and the Canadian Longitudinal Study on Aging (CLSA)	3
Using Family History Data to Improve the Power of Association Studies: Application to Cancer in UK Biobank	3
Use of genetic correlations to examine selection bias	2
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Sex‐Specific Association Between Polymorphisms in Estrogen Receptor Alpha Gene (ESR1) and Depression: A Genome‐Wide Association Study of All of Us and UK Biobank Data	2
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Bias correction for inverse variance weighting Mendelian randomization	2
Correction to “Abstracts”	2
Improved two‐step testing of genome‐wide gene–environment interactions	2
Comparison of regmed and BayesNetty for exploring causal models with many variables	2
General Kernel Machine Methods for Multi‐Omics Integration and Genome‐Wide Association Testing With Related Individuals	2
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Evaluating a Mendelian Risk Prediction Model That Aggregates Across Genes and Cancers	2
Data‐adaptive and pathway‐based tests for association studies between somatic mutations and germline variations in human cancers	2
Using parent‐offspring pairs and trios to estimate indirect genetic effects in education	2
Statistical learning for sparser fine‐mapped polygenic models: The prediction of LDL‐cholesterol	2
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Shared and Distinct Genetic Factors Underlying Bile Acid Regulation and Intrahepatic Cholestasis of Pregnancy	2
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Limitation of permutation‐based differential correlation analysis	2
Genetic heterogeneity: Challenges, impacts, and methods through an associative lens	2
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Bayesian multivariant fine mapping using the Laplace prior	1
Using clustering of genetic variants in Mendelian randomization to interrogate the causal pathways underlying multimorbidity from a common risk factor	1
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Gene−Air Pollution Interaction and Diversity of Genetic Sampling: The Southern California Children's Health Study	1
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Cross‐Ancestry Polygenic Prediction: Comparing Methods and Assessing Transferability Across Traits	1
The sequence kernel association test for multicategorical outcomes	1

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Estimating Causal Effects on a Disease Progression Trait Using Bivariate Mendelian Randomisation	1
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A Linear Mixed Model With Measurement Error Correction (LMM‐MEC): A Method for Summary‐Data‐Based Multivariable Mendelian Randomization	1
An exploration of linkage fine‐mapping on sequences from case‐control studies	1
Genome‐Wide Association Studies of Down Syndrome Associated Congenital Heart Defects Suggests a Genetically Heterogeneous Risk for CHD in DS	1
Fine‐Mapping the Results From Genome‐Wide Association Studies of Primary Biliary Cholangitis Using SuSiE and h2‐D2	1
Methods for Prioritizing Causal Genes in Molecular Studies of Human Disease: The State of the Art	1
OSCAA: A two‐dimensional Gaussian mixture model for copy number variation association analysis	1
Exploring Similarities and Differences Between Methods That Exploit Patterns of Local Genetic Correlation to Identify Shared Causal Loci Through Application to Genome‐Wide Association Studies of Multi	1
Identifying genes associated with disease outcomes using joint sparse canonical correlation analysis—An application in renal clear cell carcinoma	0
Fast and accurate recurrent event analysis for genome‐wide association studies	0
Additional article of this Special Issue was previously published in another issue of Genetic Epidemiology. That is:	0
Study of effect modifiers of genetically predicted CETP reduction	0
MR‐BOIL: Causal inference in one‐sample Mendelian randomization for binary outcome with integrated likelihood method	0
A fast linkage method for population GWAS cohorts with related individuals	0
Exploring pleiotropy in Mendelian randomisation analyses: What are genetic variants associated with ‘cigarette smoking initiation’ really capturing?	0
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Reference‐Based Standardization Approach Stabilizing Small Batch Risk Prediction via Polygenic Score	0
Making sense of breast cancer risk estimates	0
Statistical methods to detect mother–father genetic interaction effects on risk of infertility: A genome‐wide approach	0
Uncertainty Quantification in Epigenetic Clocks via Conformalized Quantile Regression	0
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Revealing genomic heterogeneity and commonality: A penalized integrative analysis approach accounting for the adjacency structure of measurements	0
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Sparse prediction informed by genetic annotations using the logit normal prior for Bayesian regression tree ensembles	0
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Genetically Predicted Gene Expression Effects on Changes in Red Blood Cell and Plasma Polyunsaturated Fatty Acids	0
Evaluation of polygenic risk scores to differentiate between type 1 and type 2 diabetes	0
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An empirical Bayes approach to improving population‐specific genetic association estimation by leveraging cross‐population data	0
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DYNATE: Localizing rare‐variant association regions via multiple testing embedded in an aggregation tree	0
Weak and pleiotropy robust sex‐stratified Mendelian randomization in the one sample and two sample settings	0
Statistical methods for cis‐Mendelian randomization with two‐sample summary‐level data	0
DRIVE v3: Command Line Application for Identity‐by‐Descent Haplotype Clustering in Large Biobank Scale Data	0
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Hierarchical joint analysis of marginal summary statistics—Part II: High‐dimensional instrumental analysis of omics data	0
Variant Classification Using Proteomics‐Informed Large Language Models Increases Power of Rare Variant Association Studies and Enhances Target Discovery	0
Deep learning identified genetic variants for COVID‐19‐related mortality among 28,097 affected cases in UK Biobank	0
Mediation analysis of multiple mediators with incomplete omics data	0
Joint analysis of multiple phenotypes for extremely unbalanced case‐control association studies	0
GWASBrewer: An R Package for Simulating Realistic GWAS Summary Statistics	0
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Archipelago Method for Variant Set Association Test Statistics	0
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Shared genetic risk between major orofacial cleft phenotypes in an African population	0
Interval estimate of causal effect in summary data based Mendelian randomization in the presence of winner's curse	0
Inference of causal metabolite networks in the presence of invalid instrumental variables with GWAS summary data	0
Breast and bowel cancers diagnosed in people ‘too young to have cancer’: A blueprint for research using family and twin studies	0
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Gene‐based association tests in family samples using GWAS summary statistics	0
Interpreting disease genome‐wide association studies and polygenetic risk scores given eligibility and study design considerations	0
The Importance of Sensitivity Analyses for the MR Steiger Approach	0
Unveiling challenges in Mendelian randomization for gene–environment interaction	0
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PSAP‐Genomic‐Regions: A Method Leveraging Population Data to Prioritize Coding and Non‐Coding Variants in Whole Genome Sequencing for Rare Disease Diagnosis	0
Powerful Rare‐Variant Association Analysis of Secondary Phenotypes	0
Correcting for Genomic Inflation Leads to Loss of Power in Large‐Scale Genome‐Wide Association Study Meta‐Analysis	0
Identifying somatic fingerprints of cancers defined by germline and environmental risk factors	0
Haplotype reconstruction for genetically complex regions with ambiguous genotype calls: Illustration by the KIR gene region	0
The Omnicausal Model Reveals the Highly Polyfactorial Nature of Complex Diseases	0
Ravages: An R package for the simulation and analysis of rare variants in multicategory phenotypes	0
Refinement of a Published Gene‐Physical Activity Interaction Impacting HDL‐Cholesterol: Role of Sex and Lipoprotein Subfractions	0
Transferability of Single‐ and Cross‐Tissue Transcriptome Imputation Models Across Ancestry Groups	0
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Extending the Use of Mendelian Randomisation With Non‐Inherited Variants to Assess Socially Transmitted Parental Exposures Under Assortative Mating	0

Mitigating type 1 error inflation and power loss in GxE PRS: Genotype–environment interaction in polygenic risk score models	0
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The Complex Relationship of Genetic Ancestry With Self‐Reported Race/Ethnicity	0
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Gene–environment interaction analysis via deep learning	0
Exploring Random Forest in Genetic Risk Score Construction	0
Identity‐By‐Descent Mapping Using Multi‐Individual IBD With Genome‐Wide Multiple Testing Adjustment	0
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Integrative Multi‐Omics Approach for Improving Causal Gene Identification	0
Predicting Lung Cancer in Korean Never‐Smokers With Polygenic Risk Scores	0
Large‐Scale Genotype‐Based Trait Imputation With Multi‐Ancestry GWAS Data	0
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Comparing Ancestry Standardization Approaches for a Transancestry Colorectal Cancer Polygenic Risk Score	0
Polygenic Risk Scores for Incident Dementia in the Multi‐Ethnic Study of Atherosclerosis	0
Efficient identification of trait‐associated loss‐of‐function variants in the UK Biobank cohort by exome‐sequencing based genotype imputation	0
Applying Bayesian Multivariable Mendelian Randomisation to Prioritise Candidate Causal Traits From High‐Dimensional Data: Illustration From Estimation of the Effect of Maternal Metabolites on Offsprin	0
Robust use of phenotypic heterogeneity at drug target genes for mechanistic insights: Application of cis‐multivariable Mendelian randomization to GLP1R gene region	0
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Exploring and Accounting for Genetically Driven Effect Heterogeneity in Mendelian Randomization	0
Proteome‐wide association study using cis and trans variants and applied to blood cell and lipid‐related traits in the Women's Health Initiative study	0
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RoPE: A robust profile likelihood method for differential gene expression analysis	0
Enhancing Gene Expression Predictions Using Deep Learning and Functional Annotations	0
Moderating the Heritability of Body Mass Index by Age and Sex With Genomic Data	0
RetroFun‐RVS: A Retrospective Family‐Based Framework for Rare Variant Analysis Incorporating Functional Annotations	0
Adaptive Bayesian variable clustering via structural learning of breast cancer data	0
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A Novel Statistical Method for Unmasking Sex‐Specific Genomics Signatures in Complex Traits	0
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A novel application of data‐consistent inversion to overcome spurious inference in genome‐wide association studies	0
Three Loci Affecting Variance of Body Mass Index in African Americans and Sub‐Saharan Africans	0
Associations of Herpes Simplex Virus Type 1/2 IgG Seropositivity and Arthritis Subtypes: Integrating Cross‐Sectional Epidemiology and Genetic Association Analyses	0
Identifying Disease Associated Multi‐Omics Network With Mixed Graphical Models Based on Markov Random Field Model	0
Individualized Bayesian Inference Identifies Novel Genetic Variants for Parkinson's Disease	0
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Polygenic hazard score models for the prediction of Alzheimer's free survival using the lasso for Cox's proportional hazards model	0
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ioSearch: An approach for identifying interacting multiomics biomarkers using a novel algorithm with application on breast cancer data sets	0
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Deep Unsupervised Domain Adaptation for Translating Cancer Dependency Maps From Cell Lines to Breast Cancer Tumor Genomics	0
Hierarchical joint analysis of marginal summary statistics—Part I: Multipopulation fine mapping and credible set construction	0
Variant Prioritization by Pedigree‐Based Haplotyping	0
Adjustment for Genotype Imputation Uncertainty Corrects for Inflated Type I Error in Family‐Based Association Testing	0
Identifying Causal Genotype–Phenotype Relationships for Population‐Sampled Parent–Child Trios	0
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Abstracts	0
New proposal to address mediation analysis interrogations by using genetic variants as instrumental variables	0
Comment on: A Novel Mendelian Randomization Method With Binary Risk Factor and Outcome	0