Molecular Biology and Evolution

Article	Citations
PHACE: Phylogeny-Aware Detection of Molecular Coevolution	1079
Genome-wide Parallelism Underlies Rapid Freshwater Adaptation Fueled by Standing Genetic Variation in a Wild Fish	587
FishmiRNA: An Evolutionarily Supported MicroRNA Annotation and Expression Database for Ray-Finned Fishes	157
A Small Change With a Twist Ending: A Single Residue in EGF-CFC Drives Bilaterian Asymmetry	149
Phylogenomic Analyses Reveal that Panguiarchaeum Is a Clade of Genome-Reduced Asgard Archaea Within the Njordarchaeia	140
Inference of Coalescence Times and Variant Ages Using Convolutional Neural Networks	125
Brief Communication: The Predictable Network Topology of Evolutionary Genomic Constraint	109
Evolution of Sex-Biased Gene Expression During Transitions to Separate Sexes in the Silene Genus	109
Correction to: Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation	109
Evolution of Spatial and Temporalcis-Regulatory Divergence in Sticklebacks	100
Highlight: Unmasking the Supergene Beneath the Ruff's Mating Strategies	97
Transposable Element Diversity and Activity Patterns in Neotropical Salamanders	95
Rewiring the Sex-Determination Pathway During the Evolution of Self-Fertility	90
Whole-genome Comparisons Identify Repeated Regulatory Changes Underlying Convergent Appendage Evolution in Diverse Fish Lineages	90
Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles	79
Chromatin Accessibility and Gene Expression Vary Between a New and Evolved Autopolyploid of Arabidopsis arenosa	75
UPrimer: A Clade-Specific Primer Design Program Based on Nested-PCR Strategy and Its Applications in Amplicon Capture Phylogenomics	73
An Ancestral Major Histocompatibility Complex Organization in Cartilaginous Fish: Reconstructing MHC Origin and Evolution	69
Prevalent Introgression Underlies Convergent Evolution in the Diversification ofPungitiusSticklebacks	69
Genomic Features Underlying the Origin of Sociality and the Diversification of Caste Systems in Termites	69
The Demographic History of Populations and Genomic Imprinting have Shaped the Transposon Patterns in Arabidopsis lyrata	68
Selection Can Favor a Recombination Landscape That Limits Polygenic Adaptation	66
How Did Evolution Halve Genome Size During an Oceanic Island Colonization?	66
Disentangling Signatures of Selection Before and After European Colonization in Latin Americans	64
The Scorpionfly ( Panorpa cognata ) Genome Highlights Conserved and Derived Features of the Peculiar Dipteran X Chromosome	63

Functional Divergence in a Multi-gene Family Is a Key Evolutionary Innovation for Anaerobic Growth in Saccharomyces cerevisiae	56
New Phylogenetic Models Incorporating Interval-Specific Dispersal Dynamics Improve Inference of Disease Spread	56
Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases	55
A General Substitution Matrix for Structural Phylogenetics	53
Elevated HIV Viral Load is Associated with Higher Recombination Rate In Vivo	53
Multilevel Gene Expression Changes in Lineages Containing Adaptive Copy Number Variants	52
Germ Granule Evolution Provides Mechanistic Insight into Drosophila Germline Development	50
Bidirectional Movement of Emerging H5N8 Avian Influenza Viruses Between Europe and Asia via Migratory Birds Since Early 2020	50
Genetic Differentiation is Constrained to Chromosomal Inversions and Putative Centromeres in Locally Adapted Populations With Higher Gene Flow	50
An Evolutionarily Conserved Laterally Acquired Toolkit Enables Microbiota Targeting by Trichomonas	50
Polishing De Novo Nanopore Assemblies of Bacteria and Eukaryotes With FMLRC2	48
Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host	48
Terrestrial Birth and Body Size Tune UCP1 Functionality in Seals	48
Unequally Abundant Chromosomes and Unusual Collections of Transferred Sequences Characterize Mitochondrial Genomes of Gastrodia (Orchidaceae), One of the Largest Mycoheterotrophic Plant Genera	46
Inference of Gene Flow between Species under Misspecified Models	46
The Human Developing Cerebral Cortex Is Characterized by an Elevated De Novo Expression of Long Noncoding RNAs in Excitatory Neurons	45
Adaptation of Antarctic Icefish Vision to Extreme Environments	45
HaploSweep: Detecting and Distinguishing Recent Soft and Hard Selective Sweeps through Haplotype Structure	45
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees	45
The Interplay Between Developmental Stage and Environment Underlies the Adaptive Effect of a Natural Transposable Element Insertion	45
Evolution of Brain-Expressed Biogenic Amine Receptors into Olfactory Trace Amine-Associated Receptors	44
Functional Prokaryotic-Like Deoxycytidine Triphosphate Deaminases and Thymidylate Synthase in Eukaryotic Social Amoebae: Vertical, Endosymbiotic, or Horizontal Gene Transfer?	42
Degeneration of the Olfactory System in a Murid Rodent that Evolved Diurnalism	42
Tracing the Origin and Evolutionary Fate of Recent Gene Retrocopies in Natural Populations of the House Mouse	42
Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the World	42
Correction to: The Impact of Genetic Surfing on Neutral Genomic Diversity	42
Most m5C Modifications in Mammalian mRNAs are Nonadaptive	40
Comprehensive Genomic Analysis Reveals Novel Transposable Element-Derived MicroRNA Regulating Caste Differentiation in Honeybees	39
SegMantX: A Novel Tool for Detecting DNA Duplications Uncovers Prevalent Duplications in Plasmids	39
De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions	39
Convergent Evolution and Host-Limiting Impacts of SARS-CoV-2 Revealed by Cellular Experiments	38
Genetic Variation in Reproductive Investment Across an Ephemerality Gradient inDaphnia pulex	38
Functional Divergence of the bag-of-marbles Gene in the Drosophila melanogaster Species Group	37
Duplication and Losses of Opsin Genes in Lophotrochozoan Evolution	37
fastDFE: Fast and Flexible Inference of the Distribution of Fitness Effects	37
Gene-by-environment Interactions and Adaptive Body Size Variation in Mice From the Americas	37
Influence of Gonadal and Chromosomal Sex on the Brain Transcriptome in a Mouse Species with Natural Sex Reversal	36
The Rich Evolutionary History of the Reactive Oxygen Species Metabolic Arsenal Shapes Its Mechanistic Plasticity at the Onset of Metazoan Regeneration	36
Evolutionary Process Underlying Receptor Gene Expansion and Cellular Divergence of Olfactory Sensory Neurons in Honeybees	35
Efficient estimation of nucleotide diversity and divergence using callable loci (and more)	34
A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events	34
Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias	33
Genetic Incompatibilities and Evolutionary Rescue by Wild Relatives Shaped Grain Amaranth Domestication	33
Phylotranscriptomics Resolves the Phylogeny of Pooideae and Uncovers Factors for Their Adaptive Evolution	33
Cytoplasmic Polyadenylation Is an Ancestral Hallmark of Early Development in Animals	33
Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton ( Gossypium ) and Unequally between Subgenomes	33
Ecological Speciation Promoted by Divergent Regulation of Functional Genes Within African Cichlid Fishes	33
GroEL/S Overexpression Helps to Purge Deleterious Mutations and Reduce Genetic Diversity during Adaptive Protein Evolution	32
Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages	32
Convergent Evolution of Cysteine-Rich Keratins in Horny Teeth of Jawless Vertebrates and in Cornified Skin Appendages of Amniotes	31

MEGA12: Molecular Evolutionary Genetic Analysis Version 12 for Adaptive and Green Computing	31
ShiNyP: Unlocking SNP-Based Population Genetics—AI-Assisted Platform for Rapid and Interactive Visual Exploration	31
Ecological Diversification in an Adaptive Radiation of Plants: The Role of De Novo Mutation and Introgression	31
TimeTree 5: An Expanded Resource for Species Divergence Times	31
Multiple Origins and Genomic Basis of Complex Traits in Sighthounds	31
On the Decoupling of Evolutionary Changes in mRNA and Protein Levels	31
Quantifying the Evolutionary Dynamics of Structure and Content in Closely Related E. coli Genomes	31
Divergent Cardiovascular Adaptations and Gene Regulation in High-Elevation Natives and Recent Colonizers of the Qinghai-Tibetan Plateau	30
Deciphering the Impact of Temperature on Pleiotropic Consequences of RNA Polymerase Mutations	30
Introducing the Y-chromosomal Ancestral-like Reference Sequence—Improving the Capture of Human Evolutionary Information	30
Adaptive Evolution of Nearctic Deepwater Fish Vision: Implications for Assessing Functional Variation for Conservation	29
Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution	29
Toxin-Antitoxin Systems Reflect Community Interactions Through Horizontal Gene Transfer	29
Organism-Specific Sequence Motifs Link Ribosomal RNAs to Brain Disorders	29
Evolution of SL-RNA Genes and Their Splicing Targets in Parasitic Flatworms	29
SAI: A Python Package for Statistics for Adaptive Introgression	28
Genomic Variation, Population History, and Long-Term Genetic Adaptation to High Altitudes in Tibetan Partridge (Perdix hodgsoniae)	28
Sympatric Recombination in Zoonotic Cryptosporidium Leads to Emergence of Populations with Modified Host Preference	28
Earl Grey: A Fully Automated User-Friendly Transposable Element Annotation and Analysis Pipeline	28
SARS-CoV-2 Evolution in Humans Enables Its Transmission to Nonhuman Primates	28
MicroRNAs as Indicators into the Causes and Consequences of Whole-Genome Duplication Events	27
Revealing Reassortment in Influenza A Viruses with TreeSort	27
An Alternative Self-Splicing Intron Lifecycle Revealed by Dynamic Intron Turnover in Epichloë Endophyte Mitochondrial Genomes	27
Dating Ammonia-Oxidizing Bacteria with Abundant Eukaryotic Fossils	27
Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive Zones	27
Host-Associated Genetic Differentiation in the Face of Ongoing Gene Flow: Ecological Speciation in a Pathogenic Parasite of Freshwater Fish	27
Recurrent Duplication and Diversification of a Vital DNA Repair Gene Family Across Drosophila	27
Using all Gene Families Vastly Expands Data Available for Phylogenomic Inference	27
The Genomic Basis of Evolutionary Novelties in a Leafhopper	27
A Million Years of Mammoth Mitogenome Evolution	27
Quantifying the Evolution of SNPs That Affect RNA Secondary Structure in Arabidopsis thaliana Genes	27
PlantFUNCO: Integrative Functional Genomics Database Reveals Clues into Duplicates Divergence Evolution	27
The Number and Pattern of Viral Genomic Reassortments are not Necessarily Identifiable from Segment Trees	27
ASTER: A Package for Large-Scale Phylogenomic Reconstructions	27
A Quantitative Theory for Genomic Offset Statistics	27
Inference of the Demographic Histories and Selective Effects of Human Gut Commensal Microbiota Over the Course of Human History	27
Persistent, Private, and Mobile Genes: A Model for Gene Dynamics in Evolving Pangenomes	27
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets	26
Hydrophobicity-Driven Increases in Editing in Mitochondrial mRNAs during the Evolution of Kinetoplastids	26
Shrinkage-based Random Local Clocks with Scalable Inference	26
Analysis of Evolutionary Conservation, Expression Level, and Genetic Association at a Genome-wide Scale Reveals Heterogeneity Across Polygenic Phenotypes	26
Antimutator and Mutational Spectrum Effects Can Combine to Reduce Evolutionary Potential in Escherichia coli ΔnudJ	25
Highlight: Community Tournament GHIST Fuels Advances in Computational Genetics	25
Correction to: Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding	25
A Thermodynamic Atlas of Proteomes Reveals Energetic Innovation across the Tree of Life	25
Climate Warming Since the Holocene Accelerates West–East Communication for the Eurasian Temperate Water Strider SpeciesAquarius paludum	25
Cold-Driven Hemoglobin Evolution in Antarctic Notothenioid Fishes Prior to Hemoglobin Gene Loss in White-Blooded Icefishes	25
Between but Not Within-Species Variation in the Distribution of Fitness Effects	25
Resolving the Stasis-Dynamism Paradox: Genome Evolution in Tree Ferns	25
Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors	25
Functional Determinants and Evolutionary Consequences of Pleiotropy in Complex and Mendelian Traits	25
Conservation of the Restricted Expression of Brassicaceae Bsister-Like Genes in Seeds Requires a Transposable Element in Arabidopsis thaliana	25
A Near-Deterministic Mutational Hotspot in Pseudomonas fluorescens Is Constructed by Multiple Interacting Genomic Features	25
Redundant and Singular Regulatory Elements Underlie the Rapidly Evolving Pigmentation of Drosophila	25
Multiple Sources of Uncertainty Confound Inference of Historical Human Generation Times	24
Genetic and Anatomical Determinants of Olfaction in Dogs and Wild Canids	24
Low Spontaneous Mutation Rate in Complex Multicellular Eukaryotes with a Haploid–Diploid Life Cycle	24
Functional Characterization of Luciferase in a Brittle Star Indicates Parallel Evolution Influenced by Genomic Availability of Haloalkane Dehalogenase	24
Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles	24
The Convergent Evolution of Hummingbird Pollination Results in Repeated Floral Scent Loss Through Gene Downregulation	24
Challenging the Importance of Plastid Genome Structure Conservation: New Insights From Euglenophytes	23
Duplication and Specialization of NUDX1 in Rosaceae Led to Geraniol Production in Rose Petals	23
A General Principle of Neuronal Evolution Reveals a Human-Accelerated Neuron Type Potentially Underlying the High Prevalence of Autism in Humans	23
Erratum to: Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.)	23
The Genomic Landscapes of Desert Birds Form over Multiple Time Scales	23
Loss of Timeless Underlies an Evolutionary Transition within the Circadian Clock	23
The Population History of Domestic Sheep Revealed by Paleogenomes	23
Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci	23
Single-cell and Spatial Transcriptomics Illuminate Bat Immunity and Barrier Tissue Evolution	23
The Carbon Footprint of Bioinformatics	23
Decoding the Fundamental Drivers of Phylodynamic Inference	23
Correction to: Micro-RNA Clusters Integrate Evolutionary Constraints on Expression and Target Affinities: The miR-6/5/4/286/3/309 Cluster in Drosophila	22
Canalization of the Polygenic Risk for Common Diseases and Traits in the UK Biobank Cohort	22
Genomic Shifts, Phenotypic Clines, and Fitness Costs Associated With Cold Tolerance in the Asian Tiger Mosquito	22
Reused Protein Segments Linked to Functional Dynamics	22
Genetic Drift Shapes the Evolution of a Highly Dynamic Metapopulation	22
PRD-Class Homeobox Genes in Bovine Early Embryos: Function, Evolution, and Overlapping Roles	22
Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes ofDaphnia pulex,Daphnia pulicaria, andDaphnia obtusa	22
Measuring the Efficiency of Purging by non-random Mating in Human Populations	22
Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate	22

Robustness of Ancestral Sequence Reconstruction to Among-site and Among-lineage Evolutionary Heterogeneity	22
Patterns of Fitness and Gene Expression Epistasis Generated by Beneficial Mutations in the rho and rpoB Genes of Escherichia coli during High-Temperature Adaptation	22
Deciphering the Role of Rapidly Evolving Conserved Elements in Primate Brain Development and Exploring Their Potential Involvement in Alzheimer's Disease	22
Large-Scale Chromosomal Changes Lead to Genome-Level Expression Alterations, Environmental Adaptation, and Speciation in the Gayal (Bos frontalis)	22
The Narrow Footprint of Ancient Balancing Selection Revealed by Heterokaryon Incompatibility Genes in Aspergillus fumigatus	22
Consequences of Substitution Model Selection on Protein Ancestral Sequence Reconstruction	22
GnT Motifs Can Increase T:A→G:C Mutation Rates Over 1000-fold in Bacteria	22
HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences	21
Genetic Connections and Convergent Evolution of Tropical Indigenous Peoples in Asia	21
Diversity and Evolution of Frog Visual Opsins: Spectral Tuning and Adaptation to Distinct Light Environments	21
Sequence Divergence and Retrotransposon Insertion Underlie Interspecific Epigenetic Differences in Primates	21
Putative Signals of Generalist Plant Species Adaptation to Local Pollinator Communities and Abiotic Factors	21
Fixed Allele Differences Associated With the Centromere Reveal Chromosome Morphology and Rearrangements in a Reptile (Varanus acanthurus BOULENGER)	21
Synergism, Bifunctionality, and the Evolution of a Gradual Sensory Trade-off in Hummingbird Taste Receptors	21
Evolutionary Shortcuts via Multinucleotide Substitutions and Their Impact on Natural Selection Analyses	21
Contrasting Patterns of Single Nucleotide Polymorphisms and Structural Variation Across Multiple Invasions	21
Uncovering the Genomic Basis of Infection Through Co-genomic Sequencing of Hosts and Parasites	21
Horizontally Acquired Cellulases Assist the Expansion of Dietary Range inPristionchusNematodes	21
Convergent Molecular Evolution Associated With Repeated Transitions to Gregarious Larval Behavior in Heliconiini	21
Premetazoan Origin of Neuropeptide Signaling	21
The Neurodevelopmental Gene MSANTD2 Belongs to a Gene Family Formed by Recurrent Molecular Domestication of Harbinger Transposons at the Base of Vertebrates	21
Tensor Decomposition-based Feature Extraction and Classification to Detect Natural Selection from Genomic Data	20
Exploring Large Protein Sequence Space through Homology- and Representation-based Hierarchical Clustering	20
Mitonuclear Discordance of Beetles Shaped by Incomplete Lineage Sorting and Introgression Under Loose Interaction Mechanism	20
TF-High-Evolutionary: In Vivo Mutagenesis of Gene Regulatory Networks for the Study of the Genetics and Evolution of the Drosophila Regulatory Genome	20
The Heterogeneity in the Landscape of Gene Dominance in Maize is Accompanied by Unique Chromatin Environments	20
Genomic Evidence for the Nonpathogenic State in HIV-1–Infected Northern Pig-Tailed Macaques	20
DIVERGE v4: A Platform for Large-Scale Analysis of Functional Divergence Across Multi-Gene Families	20
Computationally Efficient Demographic History Inference from Allele Frequencies with Supervised Machine Learning	20
Not Quite Lost in Translation: Mistranslation Alters Adaptive Landscape Topography and the Dynamics of Evolution	20
Signatures of Adaptation and Purifying Selection in Highland Populations of Dasiphora fruticosa	20
Evolution of Large Polymorphic Inversions in a Panmictic Songbird	20
Nonhypermutator Cancers Access Driver Mutations Through Reversals in Germline Mutational Bias	20
Wiring Between Close Nodes in Molecular Networks Evolves More Quickly Than Between Distant Nodes	20
Five-leaf Generalizations of the D-statistic Reveal the Directionality of Admixture	20
Reference-Free Variant Calling with Local Graph Construction with ska lo (SKA)	20
Bioinformatics Analysis of Mutations Sheds Light on the Evolution of Dengue NS1 Protein With Implications in the Identification of Potential Functional and Druggable Sites	20
The High Mutational Sensitivity of ccdA Antitoxin Is Linked to Codon Optimality	20
Interactomics: Dozens of Viruses, Co-evolving With Humans, Including the Influenza A Virus, may Actively Distort Human Aging	20
Sex-Specific Dominance of Gene Expression in Seed Beetles	20
Prediction of Antibiotic Resistance Evolution by Growth Measurement of All Proximal Mutants of Beta-Lactamase	20
Saltational Episodes of Reticulate Evolution in the Drosophila saltans Species Group	19
Redistribution of Ancestral Functions Underlies the Evolution of Venom Production in Marine Predatory Snails	19
Comparative Genomics Reveals Insights into the Divergent Evolution of Astigmatic Mites and Household Pest Adaptations	19
Evolutionary and Functional Analysis of Caspase-8 and ASC Interactions to Drive Lytic Cell Death, PANoptosis	19
DegronMD: Leveraging Evolutionary and Structural Features for Deciphering Protein-Targeted Degradation, Mutations, and Drug Response to Degrons	19
Changes in Ploidy Drive Reproduction Transition and Genomic Diversity in a Polyploid Fish Complex	19
Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae)	19
The Codon Statistics Database: A Database of Codon Usage Bias	19
Copy Number Variation Shapes Structural Genomic Diversity Associated With Ecological Adaptation in the Wild Tomato Solanum chilense	19
Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization	19
Road to Extinction? Past and Present Population Structure and Genomic Diversity in the Koala	19
The Evolution of Transglutaminases Underlies the Origin and Loss of Cornified Skin Appendages in Vertebrates	19
Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution	19
Extensive Recombination Suppression and Genetic Degeneration of a Young ZW Sex Chromosome System in Halfbeak Fish	19
Parallel Evolution of Ameloblastic scpp Genes in Bony and Cartilaginous Vertebrates	19
General Theory of Specific Binding: Insights from a Genetic-Mechano-Chemical Protein Model	18
Dynamics of Deleterious Mutations and Purifying Selection in Small Population Isolates	18
Fortieth Anniversary Virtual Issues: Microbial Diversity and the Tree of Life	18
Insights into RAG Evolution from the Identification of “Missing Link” Family A RAGL Transposons	18
Paleozoic Protein Fossils Illuminate the Evolution of Vertebrate Genomes and Transposable Elements	18
Adaptive Capacity of a DNA Polymerase Clamp-loader ATPase Complex	18
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography	18
A Balanced Inversion Polymorphism Exhibits a Dominance Reversal at the Gene Expression Level that Depends on Developmental Context	18
Independent Evolution of Sex Chromosomes and Male Pregnancy–Related Genes in Two Seahorse Species	18
40th Anniversary Virtual Issues: Genomic Innovations in Extremophiles	18
Biases in ARG-Based Inference of Historical Population Size in Populations Experiencing Selection	18
Mitonuclear Sex Determination? Empirical Evidence from Bivalves	18
The Length of Haplotype Blocks and Signals of Structural Variation in Reconstructed Genealogies	18
Comprehensive annotation of olfactory and gustatory receptor genes and transposable elements revealed their evolutionary dynamics in aphids	18
Accurate, Scalable Structural Variant Genotyping in Complex Genomes at Population Scales	18
Inferring Long-Term and Short-Term Determinants of Genetic Diversity in Honey Bees: Beekeeping Impact and Conservation Strategies	18
Spatiotemporal Tracking of Three Novel Transposable Element Invasions in Drosophila melanogaster over the Last 30 Years	17
Earliest Photic Zone Niches Probed by Ancestral Microbial Rhodopsins	17
Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the CrypticParameciumComplex	17
Insufficient Evidence for a Severe Bottleneck in Humans During the Early to Middle Pleistocene Transition	17
Widespread Variation in EDNRB2 Is Associated With Diverse Melanin Loss Phenotypes Across Avian Species	17
Comparative Population Transcriptomics Provide New Insight into the Evolutionary History and Adaptive Potential of World Ocean Krill	17
Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures	17
Convergent Adaptation of Ootheca Formation as a Reproductive Strategy in Polyneoptera	17
PhyloAcc-GT: A Bayesian Method for Inferring Patterns of Substitution Rate Shifts on Targeted Lineages Accounting for Gene Tree Discordance	17
Developmental Selection and the Perception of Mutation Bias	17
The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate	17
Evolution of the Plant-Associated Pantoea was Accompanied by Plasmid Domestication Events	17
Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection	17
Deleterious Mutations and the Rare Allele Burden on Rice Gene Expression	17
Rewinding the Ratchet: Rare Recombination Locally Rescues Neo-W Degeneration and Generates Plateaus of Sex-Chromosome Divergence	17
Divergence of Leptin Receptor and Interleukin-6 Receptor Subunit b in Early Vertebrate Evolution and Physiological Insights from the Sea Lamprey	17
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal GenusPisolithus	17
Evolutionary Genomics Unravels the Responses and Adaptation to Climate Change in a Key Alpine Forest Tree Species	17
Comparing Phylogeographies to Reveal Incompatible Geographical Histories within Genomes	17
The Evolutionary History of Drosophila simulans Y Chromosomes Reveals Molecular Signatures of Resistance to Sex Ratio Meiotic Drive	16
Modeling the evolution of ultraconserved elements by indels	16
Genomics of Secondarily Temperate Adaptation in the Only Non-Antarctic Icefish	16
Conservation Evolutionary Biology: A Unified Framework Connecting the Past, Present, and Future of Biodiversity Conservation	16