Molecular Biology and Evolution

Article	Citations
TimeTree 5: An Expanded Resource for Species Divergence Times	556
The Chicken Pan-Genome Reveals Gene Content Variation and a Promoter Region Deletion in IGF2BP1 Affecting Body Size	90
The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate	88
Herbicide Selection Promotes Antibiotic Resistance in Soil Microbiomes	84
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function	72
Whole-Genome Resequencing of Worldwide Wild and Domestic Sheep Elucidates Genetic Diversity, Introgression, and Agronomically Important Loci	66
Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa	62
Beginner's Guide on the Use of PAML to Detect Positive Selection	58
Unraveling the Complex Hybrid Ancestry and Domestication History of Cultivated Strawberry	56
Evolution of Plasmid Mobility: Origin and Fate of Conjugative and Nonconjugative Plasmids	55
Pseudofinder: Detection of Pseudogenes in Prokaryotic Genomes	52
Comprehensive Species Sampling and Sophisticated Algorithmic Approaches Refute the Monophyly of Arachnida	51
The Emergence of the Spike Furin Cleavage Site in SARS-CoV-2	51
Spatiotemporal Evolution of the Global Species Diversity of Rhododendron	50
Giant Starship Elements Mobilize Accessory Genes in Fungal Genomes	50
Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza	49
A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy ofKlebsiella pneumoniaeStrains	46
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees	46
Global Dynamics of Porcine Enteric Coronavirus PEDV Epidemiology, Evolution, and Transmission	45
Premetazoan Origin of Neuropeptide Signaling	45
De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions	42
The Carbon Footprint of Bioinformatics	41
Phylogeography Reveals Association between Swine Trade and the Spread of Porcine Epidemic Diarrhea Virus in China and across the World	41
AliSim: A Fast and Versatile Phylogenetic Sequence Simulator for the Genomic Era	41
Phylotranscriptomics Resolves the Phylogeny of Pooideae and Uncovers Factors for Their Adaptive Evolution	41

MitoFish, MitoAnnotator, and MiFish Pipeline: Updates in 10 Years	40
Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome	39
Genome Resequencing Reveals Rapid, Repeated Evolution in the Colorado Potato Beetle	37
A Near-Deterministic Mutational Hotspot in Pseudomonas fluorescens Is Constructed by Multiple Interacting Genomic Features	37
Loss of Timeless Underlies an Evolutionary Transition within the Circadian Clock	37
Ongoing Recombination in SARS-CoV-2 Revealed through Genealogical Reconstruction	36
Evolution of the SARS-CoV-2 Mutational Spectrum	36
Nemertean, Brachiopod, and Phoronid Neuropeptidomics Reveals Ancestral Spiralian Signaling Systems	35
Giant Viruses Encode Actin-Related Proteins	35
Functional Evolution of a Bark Beetle Odorant Receptor Clade Detecting Monoterpenoids of Different Ecological Origins	35
Phenotype Bias Determines How Natural RNA Structures Occupy the Morphospace of All Possible Shapes	35
Ancient Demographics Determine the Effectiveness of Genetic Purging in Endangered Lizards	34
Placing Ancient DNA Sequences into Reference Phylogenies	34
A Population Genomic Assessment of Three Decades of Evolution in a Natural Drosophila Population	32
Phylogenomic Analyses of Alismatales Shed Light into Adaptations to Aquatic Environments	31
Global Genetic Heterogeneity in Adaptive Traits	31
The Neighborhood of the Spike Gene Is a Hotspot for Modular Intertypic Homologous and Nonhomologous Recombination in Coronavirus Genomes	31
Comparative Genomics Elucidates the Origin of a Supergene Controlling Floral Heteromorphism	31
Modeling Sequence-Space Exploration and Emergence of Epistatic Signals in Protein Evolution	31
Biases in demographic modelling affect our understanding of recent divergence	30
Detecting Selection in Multiple Populations by Modeling Ancestral Admixture Components	29
Noncoding Variation and Transcriptional Plasticity Promote Thermal Adaptation in Oysters by Altering Energy Metabolism	29
Genome-Wide Reconstruction of Rediploidization Following Autopolyploidization across One Hundred Million Years of Salmonid Evolution	29
A Deep-Learning Approach for Inference of Selective Sweeps from the Ancestral Recombination Graph	29
SpeciesRax: A Tool for Maximum Likelihood Species Tree Inference from Gene Family Trees under Duplication, Transfer, and Loss	29
Evolutionary Implications of the RNA N6-Methyladenosine Methylome in Plants	28
De novo Mutations in Domestic Cat are Consistent with an Effect of Reproductive Longevity on Both the Rate and Spectrum of Mutations	28
Endogenous Retroviruses Drive Lineage-Specific Regulatory Evolution across Primate and Rodent Placentae	28
Quantitative Lipidomics and Spatial MS-Imaging Uncovered Neurological and Systemic Lipid Metabolic Pathways Underlying Troglomorphic Adaptations in Cave-Dwelling Fish	27
Rethinking Opsins	27
Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus tremula L.)	27
Chromosome Fissions and Fusions Act as Barriers to Gene Flow betweenBrenthisFritillary Butterflies	27
Transcription Factors Evolve Faster Than Their Structural Gene Targets in the Flavonoid Pigment Pathway	27
From Easy to Hopeless—Predicting the Difficulty of Phylogenetic Analyses	26
Detection of Neanderthal Adaptively Introgressed Genetic Variants That Modulate Reporter Gene Expression in Human Immune Cells	25
Fold Evolution before LUCA: Common Ancestry of SH3 Domains and OB Domains	25
Chromosomal Fusions Facilitate Adaptation to Divergent Environments in Threespine Stickleback	25
Mutation Load in Sunflower Inversions Is Negatively Correlated with Inversion Heterozygosity	25
Defective Satellite DNA Clustering into Chromocenters Underlies Hybrid Incompatibility in Drosophila	25
Two Reference-Quality Sea Snake Genomes Reveal Their Divergent Evolution of Adaptive Traits and Venom Systems	25
Novel Classes and Evolutionary Turnover of Histone H2B Variants in the Mammalian Germline	24
Identification of RNA Virus–Derived RdRp Sequences in Publicly Available Transcriptomic Data Sets	24
Genomic Evidence for Speciation with Gene Flow in Broadcast Spawning Marine Invertebrates	24
Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton (Gossypium) and Unequally between Subgenomes	24
Limited Introgression between Rock-Wallabies with Extensive Chromosomal Rearrangements	24
Mitonuclear Coevolution, but not Nuclear Compensation, Drives Evolution of OXPHOS Complexes in Bivalves	24
B2 SINE Copies Serve as a Transposable Boundary of DNA Methylation and Histone Modifications in the Mouse	23
Molecular Evolution across Mouse Spermatogenesis	23
Dead-End Hybridization in Walnut Trees Revealed by Large-Scale Genomic Sequence Data	23
Bidirectional Movement of Emerging H5N8 Avian Influenza Viruses Between Europe and Asia via Migratory Birds Since Early 2020	22

Recovery of Deleted Deep Sequencing Data Sheds More Light on the Early Wuhan SARS-CoV-2 Epidemic	22
Population Genetics and Signatures of Selection in Early Neolithic European Farmers	22
Easy353: A Tool to Get Angiosperms353 Genes for Phylogenomic Research	22
Earl Grey: A Fully Automated User-Friendly Transposable Element Annotation and Analysis Pipeline	22
NovelDoublesexDuplication Associated with Sexually Dimorphic Development of Dogface Butterfly Wings	22
The Runaway Evolution of SARS-CoV-2 Leading to the Highly Evolved Delta Strain	21
The Codon Statistics Database: A Database of Codon Usage Bias	21
Antifungal Drug Concentration Impacts the Spectrum of Adaptive Mutations in Candida albicans	21
Evolution of Gene Expression across Species and Specialized Zooids in Siphonophora	21
FishmiRNA: An Evolutionarily Supported MicroRNA Annotation and Expression Database for Ray-Finned Fishes	21
Molluskan Dorsal–Ventral Patterning Relying on BMP2/4 and Chordin Provides Insights into Spiralian Development and Evolution	20
Global Patterns of Subgenome Evolution in Organelle-Targeted Genes of Six Allotetraploid Angiosperms	20
Domestication Shapes Recombination Patterns in Tomato	20
Citrullination Was Introduced into Animals by Horizontal Gene Transfer from Cyanobacteria	20
Long-term Small Population Size, Deleterious Variation, and Altitude Adaptation in the Ethiopian Wolf, a Severely Endangered Canid	20
Origin and Evolution of Nitrogen Fixation in Prokaryotes	19
Comparative Analysis of Mammal Genomes Unveils Key Genomic Variability for Human Life Span	19
Evolutionary Processes in the Emergence and Recent Spread of the Syphilis Agent,Treponema pallidum	19
Sympatric Recombination in Zoonotic Cryptosporidium Leads to Emergence of Populations with Modified Host Preference	19
Highly Replicated Evolution of Parapatric Ecotypes	19
Host Adaptation inLegionellalesIs 1.9 Ga, Coincident with Eukaryogenesis	19
Markhor-derived Introgression of a Genomic Region EncompassingPAPSS2Confers High-altitude Adaptability in Tibetan Goats	19
Rapid Decline of Ceftazidime Resistance in Antibiotic-Free and Sublethal Environments Is Contingent on Genetic Background	19
In Vitro Evolution Reveals Noncationic Protein–RNA Interaction Mediated by Metal Ions	18
Is the Mutation Rate Lower in Genomic Regions of Stronger Selective Constraints?	18
Major Revisions in Pancrustacean Phylogeny and Evidence of Sensitivity to Taxon Sampling	18
Genome Analysis Traces Regional Dispersal of Rice in Taiwan and Southeast Asia	18
A CLAVATA3-like Gene Acts as a Gynoecium Suppression Function in White Campion	18
MicroRNAs as Indicators into the Causes and Consequences of Whole-Genome Duplication Events	18
Tracing Bai-Yue Ancestry in Aboriginal Li People on Hainan Island	18
Papua New Guinean Genomes Reveal the Complex Settlement of North Sahul	18
Multiple Mechanisms of Photoreceptor Spectral Tuning inHeliconiusButterflies	18
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm Genome	18
Attribution of Cancer Origins to Endogenous, Exogenous, and Preventable Mutational Processes	18
Duplication and Specialization of NUDX1 in Rosaceae Led to Geraniol Production in Rose Petals	17
Evolutionary Trajectories are Contingent on Mitonuclear Interactions	17
Comparative Genomics Reveals Insights into the Divergent Evolution of Astigmatic Mites and Household Pest Adaptations	17
Evolution of Olfactory Receptors Tuned to Mustard Oils in Herbivorous Drosophilidae	17
Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures	17
Global Population Genomics of Two Subspecies ofCryptosporidium hominisduring 500 Years of Evolution	17
Endosperm Evolution by Duplicated and Neofunctionalized Type I MADS-Box Transcription Factors	17
Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution	16
Sexual Antagonism, Temporally Fluctuating Selection, and Variable Dominance Affect a Regulatory Polymorphism in Drosophila melanogaster	16
Phylogenetic and Molecular Analyses Identify SNORD116 Targets Involved in the Prader–Willi Syndrome	16
Variation in DNA Methylation in Avian Nestlings Is Largely Determined by Genetic Effects	16
Evolutionary Responses of a Reef-building Coral to Climate Change at the End of the Last Glacial Maximum	16
Warthog Genomes Resolve an Evolutionary Conundrum and Reveal Introgression of Disease Resistance Genes	16
Orthology Clusters from Gene Trees withPossvm	16
A Population-Genetic Lens into the Process of Gene Loss Following Whole-Genome Duplication	16
The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba	16
Butyrate Production Pathway Abundances Are Similar in Human and Nonhuman Primate Gut Microbiomes	16
Positive Selection and Enhancer Evolution Shaped Lifespan and Body Mass in Great Apes	16
Two Forms of Sexual Dimorphism in Gene Expression inDrosophila melanogaster: Their Coincidence and Evolutionary Genetics	16
Ancestral Sequence Reconstruction of a Cytochrome P450 Family Involved in Chemical Defense Reveals the Functional Evolution of a Promiscuous, Xenobiotic-Metabolizing Enzyme in Vertebrates	16
Genomic Signatures of Sexual Selection on Pollen-Expressed Genes in Arabis alpina	16
Genomic Underpinnings of Population Persistence in Isle Royale Moose	15
A Genetic Bottleneck of Mitochondrial DNA During Human Lymphocyte Development	15
Evolutionary Conservation Genomics Reveals Recent Speciation and Local Adaptation in Threatened Takins	15
Polishing De Novo Nanopore Assemblies of Bacteria and Eukaryotes With FMLRC2	15
Selection Balancing at Innate Immune Genes: Adaptive Polymorphism Maintenance in Toll-Like Receptors	15
Population Genetic Considerations Regarding Evidence for Biased Mutation Rates inArabidopsis thaliana	15
The Slowing Rate of CpG Depletion in SARS-CoV-2 Genomes Is Consistent with Adaptations to the Human Host	15
A Transcriptomic Atlas Underlying Developmental Plasticity of Seasonal Forms of Bicyclus anynana Butterflies	15
Inference of Gene Flow between Species under Misspecified Models	15
Genomic Impact of Whaling in North Atlantic Fin Whales	15
Changes in Ploidy Drive Reproduction Transition and Genomic Diversity in a Polyploid Fish Complex	15
An Ancestral Balanced Inversion Polymorphism Confers Global Adaptation	15
Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids	15
How Placenta Promotes the Successful Reproduction in High-Altitude Populations: A Transcriptome Comparison between Adaptation and Acclimatization	15
Transposon Insertion Drove the Loss of Natural Seed Shattering during Foxtail Millet Domestication	15
Integrating Phylogenetics With Intron Positions Illuminates the Origin of the Complex Spliceosome	14
Phylogenomic Evidence for the Origin of Obligate Anaerobic Anammox Bacteria Around the Great Oxidation Event	14
Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages	14
Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the CrypticParameciumComplex	14
Phylogenetic Articulation of Uric Acid Evolution in Mammals and How It Informs a Therapeutic Uricase	14
A New Paradigm of Multiheme Cytochrome Evolution by Grafting and Pruning Protein Modules	14
Neutral Models of De Novo Gene Emergence Suggest that Gene Evolution has a Preferred Trajectory	14
Bivalves Present the Largest and Most Diversified Repertoire of Toll-Like Receptors in the Animal Kingdom, Suggesting Broad-Spectrum Pathogen Recognition in Marine Waters	14
A Quantitative Theory for Genomic Offset Statistics	14
Disentangling Signatures of Selection Before and After European Colonization in Latin Americans	14

An Enigmatic Stramenopile Sheds Light on Early Evolution in Ochrophyta Plastid Organellogenesis	13
Horizontally Acquired Cellulases Assist the Expansion of Dietary Range inPristionchusNematodes	13
Embracing Green Computing in Molecular Phylogenetics	13
Inferring Epistasis from Genetic Time-series Data	13
The Role of DNA Methylation in Genome Defense in Cnidaria and Other Invertebrates	13
Convergent Loss of Chemoreceptors across Independent Origins of Slave-Making in Ants	13
Molecular Phylogeny Reveals the Past Transoceanic Voyages of Drywood Termites (Isoptera, Kalotermitidae)	13
HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences	13
The Transposition Rate Has Little Influence on the Plateauing Level of the P-element	13
Dynamics and Impacts of Transposable Element Proliferation in the Drosophila nasuta Species Group Radiation	13
Ancient Human Genomes and Environmental DNA from the Cement Attaching 2,000-Year-Old Head Lice Nits	13
Different Genes are Recruited During Convergent Evolution of Pregnancy and the Placenta	13
Codon Optimization Improves the Prediction of Xylose Metabolism from Gene Content in Budding Yeasts	13
Transposable Element Interactions Shape the Ecology of the Deer Mouse Genome	13
The Genetic Architecture of Adaptation to Leaf and Root Bacterial Microbiota inArabidopsis thaliana	13
Miniature Inverted-repeat Transposable Elements Drive Rapid MicroRNA Diversification in Angiosperms	13
Population Genomics of Wall Lizards Reflects the Dynamic History of the Mediterranean Basin	13
Venom Gene Sequence Diversity and Expression Jointly Shape Diet Adaptation in Pitvipers	13
Re-evaluating Homoploid Reticulate Evolution in Helianthus Sunflowers	12
Single-molecule Sequencing of an Animal Mitochondrial Genome Reveals Chloroplast-like Architecture and Repeat-mediated Recombination	12
A Mutation–Selection Model of Protein Evolution under Persistent Positive Selection	12
Reconstructing the Origins of the Somatostatin and Allatostatin-C Signaling Systems Using the Accelerated Evolution of Biodiverse Cone Snail Toxins	12
Genomic Signatures of Mitonuclear Coevolution in Mammals	12
Human-Mediated Admixture and Selection Shape the Diversity on the Modern Swine (Sus scrofa) Y Chromosomes	12
Recombination Variation Shapes Phylogeny and Introgression in Wild Diploid Strawberries	12
The Heterogeneity in the Landscape of Gene Dominance in Maize is Accompanied by Unique Chromatin Environments	12
Consequences of Substitution Model Selection on Protein Ancestral Sequence Reconstruction	12
Co-evolutionary Signals IdentifyBurkholderia pseudomalleiSurvival Strategies in a Hostile Environment	12
Genomic Signatures of Recent Adaptation in a Wild Bumblebee	12
The Complex History of Genome Duplication and Hybridization in North American Gray Treefrogs	12
Evolutionary History and Strength of Selection Determine the Rate of Antibiotic Resistance Adaptation	12
Evolution is not Uniform Along Coding Sequences	12
Canalization of the Polygenic Risk for Common Diseases and Traits in the UK Biobank Cohort	12
Using all Gene Families Vastly Expands Data Available for Phylogenomic Inference	12
On the Decoupling of Evolutionary Changes in mRNA and Protein Levels	12
Parallel Genomic Changes Drive Repeated Evolution of Placentas in Live-Bearing Fish	12
Ecological Speciation Promoted by Divergent Regulation of Functional Genes Within African Cichlid Fishes	12
Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive Zones	11
Endogenous Viral Elements in Shrew Genomes Provide Insights into Pestivirus Ancient History	11
The Elephant Evolved p53 Isoforms that Escape MDM2-Mediated Repression and Cancer	11
Whole-Genome Duplication Facilitated the Evolution of C4 Photosynthesis in Gynandropsis gynandra	11
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal GenusPisolithus	11
Dissecting Genomic Determinants of Positive Selection with an Evolution-Guided Regression Model	11
Bayesian Phylogenetic Inference using Relaxed-clocks and the Multispecies Coalescent	11
Robertsonian Fusion and Centromere Repositioning Contributed to the Formation of Satellite-free Centromeres During the Evolution of Zebras	11
Strong Positive Selection inAedes aegyptiand the Rapid Evolution of Insecticide Resistance	11
Evolution, Expression Patterns, and Distribution of Novel Ribbon Worm Predatory and Defensive Toxins	11
Evolutionary Trajectories of New Duplicated and Putative De Novo Genes	11
An Independent Evolutionary Origin for Insect Deterrent Cucurbitacins inIberis amara	11
Dietary, Cultural, and Pathogens-Related Selective Pressures Shaped Differential Adaptive Evolution among Native Mexican Populations	11
Evolutionary Genomics of a Subdivided Species	11
Phylogenomics Uncovers Evolutionary Trajectory of Nitrogen Fixation in Cyanobacteria	11
Demographic and Selection Histories of Populations Across the Sahel/Savannah Belt	11
African Suid Genomes Provide Insights into the Local Adaptation to Diverse African Environments	11
Resistance Evolution against Host-directed Antiviral Agents: Buffalopox Virus Switches to Use p38-ϒ under Long-term Selective Pressure of an Inhibitor Targeting p38-α	11
An Extended Admixture Pulse Model Reveals the Limitations to Human–Neandertal Introgression Dating	11
An Ancient Clade of Penelope-Like Retroelements with Permuted Domains Is Present in the Green Lineage and Protists, and Dominates Many Invertebrate Genomes	11
Looking through the Lens of the Ribosome Biogenesis Evolutionary History: Possible Implications for Archaeal Phylogeny and Eukaryogenesis	11
Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae)	11
Redefining Possible: Combining Phylogenomic and Supersparse Data in Frogs	11
DLX5/6 GABAergic Expression Affects Social Vocalization: Implications for Human Evolution	11
Phylodynamic Inference of Bacterial Outbreak Parameters Using Nanopore Sequencing	10
Pervasive Selection for Clinically Relevant Resistance and Media Adaptive Mutations at Very Low Antibiotic Concentrations	10
Developing an Evolutionary Baseline Model for Humans: Jointly Inferring Purifying Selection with Population History	10
Correction to: A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis	10
The Role of the Environment in Horizontal Gene Transfer	10
Population Histories and Genomic Diversity of South American Natives	10
Deleterious Mutations and the Rare Allele Burden on Rice Gene Expression	10
Joint Inference of Migration and Reassortment Patterns for Viruses with Segmented Genomes	10
Long-Term Balancing Selection and the Genetic Load Linked to the Self-Incompatibility Locus in Arabidopsis halleri and A. lyrata	10
Rates of Mutations and Transcript Errors in the Foodborne PathogenSalmonella entericasubsp.enterica	10
IAGS: Inferring Ancestor Genome Structure under a Wide Range of Evolutionary Scenarios	10
Historical Contingency Drives Compensatory Evolution and Rare Reversal of Phage Resistance	10
Deciphering the Genetic Basis of Silkworm Cocoon Colors Provides New Insights into Biological Coloration and Phenotypic Diversification	10
Evolutionary History of Sexual Differentiation Mechanism in Insects	10
Island Biogeography Revisited: Museomics Reveals Affinities of Shelf Island Birds Determined by Bathymetry and Paleo-Rivers, Not by Distance to Mainland	10
A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events	10
Adaptive Evolution of the Spike Protein in Coronaviruses	10
Convergent Adaptation of Ootheca Formation as a Reproductive Strategy in Polyneoptera	10
Neofunctionalization of a Noncoding Portion of a DNA Transposon in the Coding Region of the Chimerical Sex-Determining Gene dm-W in Xenopus Frogs	10
Plastic Rewiring of Sef1 Transcriptional Networks and the Potential of Nonfunctional Transcription Factor Binding in Facilitating Adaptive Evolution	10
Loss of Heterozygosity Spectrum Depends on Ploidy Level in Natural Yeast Populations	10
Whole Genome Duplication and Gene Evolution in the Hyperdiverse Venomous Gastropods	10
Ecology, Not Host Phylogeny, Shapes the Oral Microbiome in Closely Related Species	10
Multiple Profile Models Extract Features from Protein Sequence Data and Resolve Functional Diversity of Very Different Protein Families	10
MaLAdapt Reveals Novel Targets of Adaptive Introgression From Neanderthals and Denisovans in Worldwide Human Populations	10
Positive Selection during Niche Adaptation Results in Large-Scale and Irreversible Rearrangement of Chromosomal Gene Order in Bacteria	10
Interactions Between Natural Selection and Recombination Shape the Genomic Landscape of Introgression	10
Sirtuin Evolution at the Dawn of Animal Life	10
Prokaryotic Pangenomes Act as Evolving Ecosystems	10
A Fast, Reproducible, High-throughput Variant Calling Workflow for Population Genomics	10
Remarkably LowKIRandHLADiversity in Amerindians Reveals Signatures of Strong Purifying Selection Shaping the CentromericKIRRegion	10
Testosterone Coordinates Gene Expression Across Different Tissues to Produce Carotenoid-Based Red Ornamentation	10
Geography-Dependent Horizontal Gene Transfer from Vertebrate Predators to Their Prey	10
Adaptation and Cryptic Pseudogenization in Penguin Toll-Like Receptors	10