Molecular Biology and Evolution

Article	Citations
PHACE: Phylogeny-Aware Detection of Molecular Coevolution	1122
A Small Change With a Twist Ending: A Single Residue in EGF-CFC Drives Bilaterian Asymmetry	728
Brief Communication: The Predictable Network Topology of Evolutionary Genomic Constraint	163
Evolution of Sex-Biased Gene Expression During Transitions to Separate Sexes in the Silene Genus	151
Correction to: Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation	130
Highlight: Unmasking the Supergene Beneath the Ruff's Mating Strategies	129
Whole-genome Comparisons Identify Repeated Regulatory Changes Underlying Convergent Appendage Evolution in Diverse Fish Lineages	120
Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles	112
HaploSweep: Detecting and Distinguishing Recent Soft and Hard Selective Sweeps through Haplotype Structure	101
Genomic Features Underlying the Origin of Sociality and the Diversification of Caste Systems in Termites	100
Elevated HIV Viral Load is Associated with Higher Recombination Rate In Vivo	100
How Did Evolution Halve Genome Size During an Oceanic Island Colonization?	95
The Scorpionfly ( Panorpa cognata ) Genome Highlights Conserved and Derived Features of the Peculiar Dipteran X Chromosome	92
Functional Divergence in a Multi-gene Family Is a Key Evolutionary Innovation for Anaerobic Growth in Saccharomyces cerevisiae	81
Redefining the Limits of Functional Continuity in the Early Evolution of P-Loop NTPases	78
Genetic Differentiation is Constrained to Chromosomal Inversions and Putative Centromeres in Locally Adapted Populations With Higher Gene Flow	77
An Evolutionarily Conserved Laterally Acquired Toolkit Enables Microbiota Targeting by Trichomonas	72
Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host	71
Inference of Gene Flow between Species under Misspecified Models	71
Terrestrial Birth and Body Size Tune UCP1 Functionality in Seals	69
Adaptation of Antarctic Icefish Vision to Extreme Environments	68
UPrimer: A Clade-Specific Primer Design Program Based on Nested-PCR Strategy and Its Applications in Amplicon Capture Phylogenomics	65
Germ Granule Evolution Provides Mechanistic Insight into Drosophila Germline Development	64
The Interplay Between Developmental Stage and Environment Underlies the Adaptive Effect of a Natural Transposable Element Insertion	58
Disentangling Signatures of Selection Before and After European Colonization in Latin Americans	56

Polishing De Novo Nanopore Assemblies of Bacteria and Eukaryotes With FMLRC2	56
Transposable Element Diversity and Activity Patterns in Neotropical Salamanders	56
The Human Developing Cerebral Cortex Is Characterized by an Elevated De Novo Expression of Long Noncoding RNAs in Excitatory Neurons	52
Unequally Abundant Chromosomes and Unusual Collections of Transferred Sequences Characterize Mitochondrial Genomes of Gastrodia (Orchidaceae), One of the Largest Mycoheterotrophic Plant Genera	51
Prevalent Introgression Underlies Convergent Evolution in the Diversification ofPungitiusSticklebacks	51
Selection Can Favor a Recombination Landscape That Limits Polygenic Adaptation	50
Evolution of Brain-Expressed Biogenic Amine Receptors into Olfactory Trace Amine-Associated Receptors	50
Inference of Coalescence Times and Variant Ages Using Convolutional Neural Networks	50
Genome-wide Parallelism Underlies Rapid Freshwater Adaptation Fueled by Standing Genetic Variation in a Wild Fish	50
Rewiring the Sex-Determination Pathway During the Evolution of Self-Fertility	48
Evolution of Spatial and Temporalcis-Regulatory Divergence in Sticklebacks	47
A General Substitution Matrix for Structural Phylogenetics	46
Phylogenomic Analyses Reveal that Panguiarchaeum Is a Clade of Genome-Reduced Asgard Archaea Within the Njordarchaeia	46
An Ancestral Major Histocompatibility Complex Organization in Cartilaginous Fish: Reconstructing MHC Origin and Evolution	45
FishmiRNA: An Evolutionarily Supported MicroRNA Annotation and Expression Database for Ray-Finned Fishes	45
Chromatin Accessibility and Gene Expression Vary Between a New and Evolved Autopolyploid of Arabidopsis arenosa	44
Bidirectional Movement of Emerging H5N8 Avian Influenza Viruses Between Europe and Asia via Migratory Birds Since Early 2020	44
Weighting by Gene Tree Uncertainty Improves Accuracy of Quartet-based Species Trees	43
New Phylogenetic Models Incorporating Interval-Specific Dispersal Dynamics Improve Inference of Disease Spread	42
Multilevel Gene Expression Changes in Lineages Containing Adaptive Copy Number Variants	42
The Demographic History of Populations and Genomic Imprinting have Shaped the Transposon Patterns in Arabidopsis lyrata	41
Deleterious Mutations Accumulate Faster in Allopolyploid Than Diploid Cotton ( Gossypium ) and Unequally between Subgenomes	40
Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages	39
Genetic Incompatibilities and Evolutionary Rescue by Wild Relatives Shaped Grain Amaranth Domestication	39
Functional Prokaryotic-Like Deoxycytidine Triphosphate Deaminases and Thymidylate Synthase in Eukaryotic Social Amoebae: Vertical, Endosymbiotic, or Horizontal Gene Transfer?	39
Evolutionary Process Underlying Receptor Gene Expansion and Cellular Divergence of Olfactory Sensory Neurons in Honeybees	39
Most m5C Modifications in Mammalian mRNAs are Nonadaptive	38
De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions	38
Duplication and Losses of Opsin Genes in Lophotrochozoan Evolution	37
Correction to: The Impact of Genetic Surfing on Neutral Genomic Diversity	37
Gene-by-environment Interactions and Adaptive Body Size Variation in Mice From the Americas	36
Phosphate Limitation Responses in Marine Green Algae Are Linked to Reprogramming of the tRNA Epitranscriptome and Codon Usage Bias	36
Influence of Gonadal and Chromosomal Sex on the Brain Transcriptome in a Mouse Species with Natural Sex Reversal	36
Cytoplasmic Polyadenylation Is an Ancestral Hallmark of Early Development in Animals	36
SegMantX: A Novel Tool for Detecting DNA Duplications Uncovers Prevalent Duplications in Plasmids	35
GroEL/S Overexpression Helps to Purge Deleterious Mutations and Reduce Genetic Diversity during Adaptive Protein Evolution	35
fastDFE: Fast and Flexible Inference of the Distribution of Fitness Effects	34
Genetic Variation in Reproductive Investment Across an Ephemerality Gradient inDaphnia pulex	34
Convergent Evolution and Host-Limiting Impacts of SARS-CoV-2 Revealed by Cellular Experiments	34
Efficient Estimation of Nucleotide Diversity and Divergence Using Callable Loci (and More)	33
Functional Divergence of the bag-of-marbles Gene in the Drosophila melanogaster Species Group	33
Ecological Speciation Promoted by Divergent Regulation of Functional Genes Within African Cichlid Fishes	33
The Rich Evolutionary History of the Reactive Oxygen Species Metabolic Arsenal Shapes Its Mechanistic Plasticity at the Onset of Metazoan Regeneration	33
Convergent Evolution of Cysteine-Rich Keratins in Horny Teeth of Jawless Vertebrates and in Cornified Skin Appendages of Amniotes	32
Comprehensive Genomic Analysis Reveals Novel Transposable Element-Derived MicroRNA Regulating Caste Differentiation in Honeybees	32
Degeneration of the Olfactory System in a Murid Rodent that Evolved Diurnalism	32
A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events	32
TimeTree 5: An Expanded Resource for Species Divergence Times	31
ShiNyP: Unlocking SNP-Based Population Genetics—AI-Assisted Platform for Rapid and Interactive Visual Exploration	31
Multiple Origins and Genomic Basis of Complex Traits in Sighthounds	31

MEGA12: Molecular Evolutionary Genetic Analysis Version 12 for Adaptive and Green Computing	31
Phylotranscriptomics Resolves the Phylogeny of Pooideae and Uncovers Factors for Their Adaptive Evolution	31
Divergent Cardiovascular Adaptations and Gene Regulation in High-Elevation Natives and Recent Colonizers of the Qinghai-Tibetan Plateau	31
On the Decoupling of Evolutionary Changes in mRNA and Protein Levels	31
Ecological Diversification in an Adaptive Radiation of Plants: The Role of De Novo Mutation and Introgression	31
Organism-Specific Sequence Motifs Link Ribosomal RNAs to Brain Disorders	31
Genomic Variation, Population History, and Long-Term Genetic Adaptation to High Altitudes in Tibetan Partridge (Perdix hodgsoniae)	29
Dating Ammonia-Oxidizing Bacteria with Abundant Eukaryotic Fossils	29
Evolution of SL-RNA Genes and Their Splicing Targets in Parasitic Flatworms	29
Introducing the Y-chromosomal Ancestral-like Reference Sequence—Improving the Capture of Human Evolutionary Information	29
Adaptive Evolution of Nearctic Deepwater Fish Vision: Implications for Assessing Functional Variation for Conservation	29
The Number and Pattern of Viral Genomic Reassortments are not Necessarily Identifiable from Segment Trees	29
PlantFUNCO: Integrative Functional Genomics Database Reveals Clues into Duplicates Divergence Evolution	29
Inference of the Demographic Histories and Selective Effects of Human Gut Commensal Microbiota Over the Course of Human History	29
Deciphering the Impact of Temperature on Pleiotropic Consequences of RNA Polymerase Mutations	29
Quantifying the Evolution of SNPs That Affect RNA Secondary Structure in Arabidopsis thaliana Genes	28
Host-Associated Genetic Differentiation in the Face of Ongoing Gene Flow: Ecological Speciation in a Pathogenic Parasite of Freshwater Fish	28
A Million Years of Mammoth Mitogenome Evolution	28
Persistent, Private, and Mobile Genes: A Model for Gene Dynamics in Evolving Pangenomes	28
Recurrent Duplication and Diversification of a Vital DNA Repair Gene Family Across Drosophila	28
SAI: A Python Package for Statistics for Adaptive Introgression	28
Sympatric Recombination in Zoonotic Cryptosporidium Leads to Emergence of Populations with Modified Host Preference	27
Revealing Reassortment in Influenza A Viruses with TreeSort	27
Toxin-Antitoxin Systems Reflect Community Interactions Through Horizontal Gene Transfer	27
Accounting for Errors in Data Improves Divergence Time Estimates in Single-cell Cancer Evolution	27
Quantifying the Evolutionary Dynamics of Structure and Content in Closely Related E. coli Genomes	27
Transcriptome-based Phylogeny of the Semi-aquatic Bugs (Hemiptera: Heteroptera: Gerromorpha) Reveals Patterns of Lineage Expansion in a Series of New Adaptive Zones	27
ASTER: A Package for Large-Scale Phylogenomic Reconstructions	27
SARS-CoV-2 Evolution in Humans Enables Its Transmission to Nonhuman Primates	27
Macroevolutionary changes in gene expression response to an immune stimulus across the diversity of fishes	27
The Genomic Basis of Evolutionary Novelties in a Leafhopper	27
A Quantitative Theory for Genomic Offset Statistics	27
Using all Gene Families Vastly Expands Data Available for Phylogenomic Inference	26
Hydrophobicity-Driven Increases in Editing in Mitochondrial mRNAs during the Evolution of Kinetoplastids	26
Redundant and Singular Regulatory Elements Underlie the Rapidly Evolving Pigmentation of Drosophila	26
Earl Grey: A Fully Automated User-Friendly Transposable Element Annotation and Analysis Pipeline	26
Shrinkage-based Random Local Clocks with Scalable Inference	26
A Thermodynamic Atlas of Proteomes Reveals Energetic Innovation across the Tree of Life	26
An Alternative Self-Splicing Intron Lifecycle Revealed by Dynamic Intron Turnover in Epichloë Endophyte Mitochondrial Genomes	26
Analysis of Evolutionary Conservation, Expression Level, and Genetic Association at a Genome-wide Scale Reveals Heterogeneity Across Polygenic Phenotypes	26
Between but Not Within-Species Variation in the Distribution of Fitness Effects	25
A General Principle of Neuronal Evolution Reveals a Human-Accelerated Neuron Type Potentially Underlying the High Prevalence of Autism in Humans	25
Correction to: Reconstruction of Microbial Haplotypes by Integration of Statistical and Physical Linkage in Scaffolding	25
Resolving the Stasis-Dynamism Paradox: Genome Evolution in Tree Ferns	25
Cold-Driven Hemoglobin Evolution in Antarctic Notothenioid Fishes Prior to Hemoglobin Gene Loss in White-Blooded Icefishes	25
Highlight: Community Tournament GHIST Fuels Advances in Computational Genetics	25
Conservation of the Restricted Expression of Brassicaceae Bsister-Like Genes in Seeds Requires a Transposable Element in Arabidopsis thaliana	25
Duplication and Specialization of NUDX1 in Rosaceae Led to Geraniol Production in Rose Petals	25
Y-Linked Copy Number Polymorphism of Target of Rapamycin Is Associated with Sexual Size Dimorphism in Seed Beetles	25
Antimutator and Mutational Spectrum Effects Can Combine to Reduce Evolutionary Potential in Escherichia coli ΔnudJ	25
Climate Warming Since the Holocene Accelerates West–East Communication for the Eurasian Temperate Water Strider SpeciesAquarius paludum	24
The Convergent Evolution of Hummingbird Pollination Results in Repeated Floral Scent Loss Through Gene Downregulation	24
Challenging the Importance of Plastid Genome Structure Conservation: New Insights From Euglenophytes	24
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets	24
Functional Characterization of Luciferase in a Brittle Star Indicates Parallel Evolution Influenced by Genomic Availability of Haloalkane Dehalogenase	24
Low Spontaneous Mutation Rate in Complex Multicellular Eukaryotes with a Haploid–Diploid Life Cycle	24
The Genomic Landscapes of Desert Birds Form over Multiple Time Scales	24
Multiple Sources of Uncertainty Confound Inference of Historical Human Generation Times	23
A Near-Deterministic Mutational Hotspot in Pseudomonas fluorescens Is Constructed by Multiple Interacting Genomic Features	23
Correction to: Micro-RNA Clusters Integrate Evolutionary Constraints on Expression and Target Affinities: The miR-6/5/4/286/3/309 Cluster in Drosophila	23
Canalization of the Polygenic Risk for Common Diseases and Traits in the UK Biobank Cohort	23
Single-cell and Spatial Transcriptomics Illuminate Bat Immunity and Barrier Tissue Evolution	23
The Population History of Domestic Sheep Revealed by Paleogenomes	23
Erratum to: Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.)	23
PRD-Class Homeobox Genes in Bovine Early Embryos: Function, Evolution, and Overlapping Roles	23
Synergism, Bifunctionality, and the Evolution of a Gradual Sensory Trade-off in Hummingbird Taste Receptors	23
Genetic and Anatomical Determinants of Olfaction in Dogs and Wild Canids	23
The Carbon Footprint of Bioinformatics	23
Functional Determinants and Evolutionary Consequences of Pleiotropy in Complex and Mendelian Traits	23
Deciphering the Role of Rapidly Evolving Conserved Elements in Primate Brain Development and Exploring Their Potential Involvement in Alzheimer's Disease	23
Measuring the Efficiency of Purging by non-random Mating in Human Populations	23
Reused Protein Segments Linked to Functional Dynamics	22
Convergent Molecular Evolution Associated With Repeated Transitions to Gregarious Larval Behavior in Heliconiini	22
Robustness of Ancestral Sequence Reconstruction to Among-site and Among-lineage Evolutionary Heterogeneity	22
Genomic Shifts, Phenotypic Clines, and Fitness Costs Associated With Cold Tolerance in the Asian Tiger Mosquito	22
Putative Signals of Generalist Plant Species Adaptation to Local Pollinator Communities and Abiotic Factors	22
GnT Motifs Can Increase T:A→G:C Mutation Rates Over 1000-fold in Bacteria	22
The Neurodevelopmental Gene MSANTD2 Belongs to a Gene Family Formed by Recurrent Molecular Domestication of Harbinger Transposons at the Base of Vertebrates	22
The Narrow Footprint of Ancient Balancing Selection Revealed by Heterokaryon Incompatibility Genes in Aspergillus fumigatus	22
Sequence Divergence and Retrotransposon Insertion Underlie Interspecific Epigenetic Differences in Primates	22

Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes ofDaphnia pulex,Daphnia pulicaria, andDaphnia obtusa	22
Large-Scale Chromosomal Changes Lead to Genome-Level Expression Alterations, Environmental Adaptation, and Speciation in the Gayal (Bos frontalis)	22
Evolutionary Shortcuts via Multinucleotide Substitutions and Their Impact on Natural Selection Analyses	22
Consequences of Substitution Model Selection on Protein Ancestral Sequence Reconstruction	22
Gene Regulatory Networks of Epidermal and Neural Fate Choice in a Chordate	22
Patterns of Fitness and Gene Expression Epistasis Generated by Beneficial Mutations in the rho and rpoB Genes of Escherichia coli during High-Temperature Adaptation	22
HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences	21
Uncovering the Genomic Basis of Infection Through Co-genomic Sequencing of Hosts and Parasites	21
Premetazoan Origin of Neuropeptide Signaling	21
Wiring Between Close Nodes in Molecular Networks Evolves More Quickly Than Between Distant Nodes	21
Diversity and Evolution of Frog Visual Opsins: Spectral Tuning and Adaptation to Distinct Light Environments	21
Decoding the Fundamental Drivers of Phylodynamic Inference	21
Road to Extinction? Past and Present Population Structure and Genomic Diversity in the Koala	21
Genomic Evidence for the Nonpathogenic State in HIV-1–Infected Northern Pig-Tailed Macaques	21
Genetic Drift Shapes the Evolution of a Highly Dynamic Metapopulation	21
Contrasting Patterns of Single Nucleotide Polymorphisms and Structural Variation Across Multiple Invasions	21
Saltational Episodes of Reticulate Evolution in the Drosophila saltans Species Group	21
Redistribution of Ancestral Functions Underlies the Evolution of Venom Production in Marine Predatory Snails	21
Interactomics: Dozens of Viruses, Co-evolving With Humans, Including the Influenza A Virus, may Actively Distort Human Aging	20
The High Mutational Sensitivity of ccdA Antitoxin Is Linked to Codon Optimality	20
Sex-Specific Dominance of Gene Expression in Seed Beetles	20
Parallel Evolution of Ameloblastic scpp Genes in Bony and Cartilaginous Vertebrates	20
Widespread turnover of a conserved cis- regulatory code across 589 grass species	20
Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae)	20
Computationally Efficient Demographic History Inference from Allele Frequencies with Supervised Machine Learning	20
Changes in Ploidy Drive Reproduction Transition and Genomic Diversity in a Polyploid Fish Complex	20
Nonhypermutator Cancers Access Driver Mutations Through Reversals in Germline Mutational Bias	20
Evolutionary and Functional Analysis of Caspase-8 and ASC Interactions to Drive Lytic Cell Death, PANoptosis	20
DIVERGE v4: A Platform for Large-Scale Analysis of Functional Divergence Across Multi-Gene Families	20
Comparative Genomics Reveals Insights into the Divergent Evolution of Astigmatic Mites and Household Pest Adaptations	20
Tensor Decomposition-based Feature Extraction and Classification to Detect Natural Selection from Genomic Data	20
Reference-Free Variant Calling with Local Graph Construction with ska lo (SKA)	20
Prediction of Antibiotic Resistance Evolution by Growth Measurement of All Proximal Mutants of Beta-Lactamase	20
Horizontally Acquired Cellulases Assist the Expansion of Dietary Range inPristionchusNematodes	20
TF-High-Evolutionary: In Vivo Mutagenesis of Gene Regulatory Networks for the Study of the Genetics and Evolution of the Drosophila Regulatory Genome	20
Not Quite Lost in Translation: Mistranslation Alters Adaptive Landscape Topography and the Dynamics of Evolution	20
Mitonuclear Discordance of Beetles Shaped by Incomplete Lineage Sorting and Introgression Under Loose Interaction Mechanism	19
DegronMD: Leveraging Evolutionary and Structural Features for Deciphering Protein-Targeted Degradation, Mutations, and Drug Response to Degrons	19
Fortieth Anniversary Virtual Issues: Microbial Diversity and the Tree of Life	19
The Codon Statistics Database: A Database of Codon Usage Bias	19
Exploring Large Protein Sequence Space through Homology- and Representation-based Hierarchical Clustering	19
The Evolution of Transglutaminases Underlies the Origin and Loss of Cornified Skin Appendages in Vertebrates	19
Signatures of Adaptation and Purifying Selection in Highland Populations of Dasiphora fruticosa	19
Copy Number Variation Shapes Structural Genomic Diversity Associated With Ecological Adaptation in the Wild Tomato Solanum chilense	19
Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization	19
A Balanced Inversion Polymorphism Exhibits a Dominance Reversal at the Gene Expression Level that Depends on Developmental Context	19
Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution	19
Bioinformatics Analysis of Mutations Sheds Light on the Evolution of Dengue NS1 Protein With Implications in the Identification of Potential Functional and Druggable Sites	19
The Heterogeneity in the Landscape of Gene Dominance in Maize is Accompanied by Unique Chromatin Environments	19
Extensive Recombination Suppression and Genetic Degeneration of a Young ZW Sex Chromosome System in Halfbeak Fish	19
40th Anniversary Virtual Issues: Genomic Innovations in Extremophiles	19
Developmental Selection and the Perception of Mutation Bias	19
Fixed Allele Differences Associated With the Centromere Reveal Chromosome Morphology and Rearrangements in a Reptile (Varanus acanthurus BOULENGER)	19
Five-leaf Generalizations of the D-statistic Reveal the Directionality of Admixture	19
Evolution of Large Polymorphic Inversions in a Panmictic Songbird	19
Dynamics of Deleterious Mutations and Purifying Selection in Small Population Isolates	18
General Theory of Specific Binding: Insights from a Genetic-Mechano-Chemical Protein Model	18
Correction to: UPrimer: A Clade-Specific Primer Design Program Based on Nested-PCR Strategy and Its Applications in Amplicon Capture Phylogenomics	18
Adaptive Capacity of a DNA Polymerase Clamp-loader ATPase Complex	18
Comprehensive Annotation of Olfactory and Gustatory Receptor Genes and Transposable Elements Revealed Their Evolutionary Dynamics in Aphids	18
The Length of Haplotype Blocks and Signals of Structural Variation in Reconstructed Genealogies	18
Spatiotemporal Tracking of Three Novel Transposable Element Invasions in Drosophila melanogaster over the Last 30 Years	18
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography	18
The Emergence of SARS-CoV-2 Variants of Concern Is Driven by Acceleration of the Substitution Rate	18
Rewinding the Ratchet: Rare Recombination Locally Rescues Neo-W Degeneration and Generates Plateaus of Sex-Chromosome Divergence	18
Paleozoic Protein Fossils Illuminate the Evolution of Vertebrate Genomes and Transposable Elements	18
Accurate, Scalable Structural Variant Genotyping in Complex Genomes at Population Scales	18
Independent Evolution of Sex Chromosomes and Male Pregnancy–Related Genes in Two Seahorse Species	18
Dynamics of Gene Loss following Ancient Whole-Genome Duplication in the CrypticParameciumComplex	17
Insufficient Evidence for a Severe Bottleneck in Humans During the Early to Middle Pleistocene Transition	17
Comparing Phylogeographies to Reveal Incompatible Geographical Histories within Genomes	17
Mitonuclear Sex Determination? Empirical Evidence from Bivalves	17
Deleterious Mutations and the Rare Allele Burden on Rice Gene Expression	17
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal GenusPisolithus	17
Insights into RAG Evolution from the Identification of “Missing Link” Family A RAGL Transposons	17
Biases in ARG-Based Inference of Historical Population Size in Populations Experiencing Selection	17
The Heterogametic Transition in European Bufo Toads Switches the Sex Linkage of Key Vertebrate Sex Determination Genes and Associates with a Large Sex Chromosome Effect	17
Correction to: Deleterious and Adaptive Mutations in Plant Germplasm Conserved Ex Situ	17
Alternative splicing contributes to plasticity and regulatory divergence in locally adapted house mice from the Americas	17
Earliest Photic Zone Niches Probed by Ancestral Microbial Rhodopsins	17
Inferring Long-Term and Short-Term Determinants of Genetic Diversity in Honey Bees: Beekeeping Impact and Conservation Strategies	17
PhyloAcc-GT: A Bayesian Method for Inferring Patterns of Substitution Rate Shifts on Targeted Lineages Accounting for Gene Tree Discordance	17
The Impact of Sequencing and Genotyping Errors on Bayesian Analysis of Genomic Data under the Multispecies Coalescent Model	17
Comparative Population Transcriptomics Provide New Insight into the Evolutionary History and Adaptive Potential of World Ocean Krill	17
Convergent Adaptation of Ootheca Formation as a Reproductive Strategy in Polyneoptera	17
Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures	17
Divergence of Leptin Receptor and Interleukin-6 Receptor Subunit b in Early Vertebrate Evolution and Physiological Insights from the Sea Lamprey	17
Functional Optimization in Distinct Tissues and Conditions Constrains the Rate of Protein Evolution	16
Tree Sequences as a General-Purpose Tool for Population Genetic Inference	16
Slow Protein Dynamics Elicits New Enzymatic Functions by Means of Epistatic Interactions	16
Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids	16
A Comparative Assessment of Self-limiting Genetic Control Strategies for Population Suppression	16
Rapid Divergence of Visual Systems and Signaling Traits to Contrasting Light Regimes During Early Speciation of African Crater Lake Cichlid Fish	16
Expression Divergence in Response to Sex-biased Selection	16
The Evolutionary History of Drosophila simulans Y Chromosomes Reveals Molecular Signatures of Resistance to Sex Ratio Meiotic Drive	16