Ecological Modelling

Article	Citations
Simplifying a complex computer model: Sensitivity analysis and metamodelling of an 3D individual-based crop-weed canopy model	258
A new model formulation for host depletion in parasitoids	159
Modified framework to reflect contribution of soil storage in emergy synthesis under different agricultural practices at farm level	145
Machine-learning modeling on tree mortality and growth reduction of temperate forests with climatic and ecophysiological parameters	128
Modelling the effects of copepod diel vertical migration and community structure on ocean carbon flux using an agent-based model	66
Spatial patterns of correlation between conspecific species and size diversity in forest ecosystems	63
Modeling collective motion for fish schooling via multi-agent reinforcement learning	61
Real-time assessment of live forest fuel moisture content and flammability by using space-time universal kriging	59
Effects of a mobile disturbance pattern on dynamic patch networks and metapopulation persistence	56
Impact of population growth and housing development on the riverine environment: Identifying environmental threat and solution in the Wanggu River, Indonesia	56
Mathematical modeling in behavior responses: The tendency-prediction based on a persistence model on real-time data	53
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Modelling assessment of how small-scale vertical movements of infectious sea lice larvae can affect their large-scale distribution in fjordic systems	33
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A protocol for implementing parameter sensitivity analyses in complex ecosystem models	33
Corrigendum to Insights into the environmental conditions contributing to variability in the larval recruitment of the tropical sardine Sardinella lemuru	32
A bioenergetics model for seasonal growth of Indian oil sardine (Sardinella longiceps) in the Indian west coast	31
Simulation of forest carbon fluxes by integrating remote sensing data into biome-BGC model	29
Individual-based modelling of adaptive physiological traits of cyanobacteria: Responses to light history	28
Analysis of carbon emission drivers and peak carbon forecasts for island economies	28

Calibration and validation of the AquaCrop model for production arrangements of forage cactus and grass in a semi-arid environment	27
Snow runoff modelling in the upper Indus River Basin and its implication to energy water food nexus	27
Resource objective wildfire leveraged to restore old growth forest structure while stabilizing carbon stocks in the southwestern United States	25
Separating acoustic signal into underlying behaviors with self-exciting point process models	25
Multimedia fates and ecological risk control strategies of phthalic acid esters in a lake recharged by reclaimed water using the QWASI fugacity model	25
Coastal generalized ecosystem model (CGEM) 1.0: Flexible model formulations for simulating complex biogeochemical processes in aquatic ecosystems	25
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Corrigendum to “How can oak regeneration in the Leipzig Floodplain Forest be effectively supported by femel plantations? Application of a demographic forest model” [Ecological Modelling 499 (2025) 110	23
Age structured partial differential equations model for Culex mosquito abundance	23
Long-term assessment of land-use and climate change on water scarcity in an arid basin in Iran	22
Incorporating biodiversity impacts in land use decisions	22
Addition of finer scale data and uncertainty analysis increases precision of geospatial suitability model for non-native plants in the US	22
Mechanistic simulations of kelp populations in a dynamic landscape of light, temperature, and winter storms	22
Individual-based modeling of shelled pteropods	22
Indirect effects of pine marten recovery result in benefits to native prey through suppression of an invasive species and a shared pathogen	22
A high resolution hydrodynamic-biogeochemical-oyster-filtration model predicts that the presence of oysters (Crassostrea virginica) can improve, or reduce, water quality depending upon oyster abundanc	22
Socio-econ-ecosystem multipurpose simulator (SEEMS): An easy-to-apply agent-based model for simulating small-scale coupled human and nature systems in biological conservation hotspots	22
Land suitability assessment and self-sufficiency evaluation for fodder crop production in a hyper arid environment coupling GIS-based multi-criteria decision making and optimization	21
Reconsidering the Price equation: Benchmarking the analytical power of additive partitioning in ecology	21
Building ecosystem services-based ecological networks in energy and chemical industry areas	21
Intelligent classification model of land resource use using deep learning in remote sensing images	21
Less is more: Less herbicide does more when biological control is present in Pontederia crassipes	21
Seasonal pattern of dengue infection in Singapore: A mechanism-based modeling and prediction	21
How sustainable development goals have transformed our world? Evolution of the ecological networks of the Italian economy	20
Development and application of a bioenergetics growth model for multiple early life stages of an ecologically important marine fish	20
“Teaching ‘Process Ecology’ at the Undergraduate Level: A Curricular Response to a Latent Yearning for an Ecologically-Based Understanding of Transdisciplinary Realities”	19
Analysis of simulated trap counts arising from correlated and biased random walks	19
Functional responses in habitat selection as a management tool to evaluate agri-environment schemes for farmland birds	19
Modelling interactive effects of biological and environmental factors on fine-scale coral settlement patterns	19
A scenario-based approach to tackle trade-offs between biodiversity conservation and land use pressure in Central Italy	19
Estimating the fundamental niche: Accounting for the uneven availability of existing climates in the calibration area	19
Corrigendum to ‘Agent-based modelling of juvenile eel migration via selective tidal stream transport’ [Ecological Modelling 443 (2021) 109448]	19
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Unfolding carbon inequality across Belt and Road Initiative countries and regions under a global trade network	19
One century of carbon dynamics in the eastern Canadian boreal forest under various management strategies and climate change projections	18
Comparison of several models for estimating gross primary production of drip-irrigated maize in arid regions	18
Uncertainties in future ecosystem services under land and climate scenarios: The case of erosion in the Alps	18
Modelling the dynamics of soil moisture and soil water salinity in tropical saltmarshes	18
A comparison of machine learning and statistical species distribution models: Quantifying overfitting supports model interpretation	18
Metacommunity stability and persistence for predation turnoff in selective patches	17
A dynamic outbreak distribution model (DODM) for an irruptive folivore: The western spruce budworm	17
Revolutionising sustainability using a new triplet: A system dynamic model	17
Performance comparison of sewage treatment plants before and after their upgradation using emergy evaluation combined with economic analysis: A case from Southwest China	17
Assessing between-individual variability in bioenergetics modelling: Opportunities, challenges, and potential applications	17
Understanding the drivers of fish variability in an end-to-end model of the Northern Humboldt Current System	17
Modeling drought mortality and resilience of savannas and forests in tropical Asia	17
Spatial-temporal evolution of carbon storage and its driving factors in the Shanxi section of the Yellow River Basin, China	16
Predicting the potential impact of forest fires on runoff and sediment loads using a distributed hydrological modeling approach	16
Combining CENTURY model and vulnerability assessment index to estimate aboveground biomass and ecological vulnerability of grassland: An analysis in Northwest Sichuan Plateau	16
A method for estimating biomass of age-0 fish in case of protracted spawning leading to multiple larval cohorts in the population	16

Integrating ecosystem services modeling and efficiencies in decision-support models conceptualization for watershed management	16
Energy-systems accounting in industrial-natural systems; An energy analysis of a managed forest ecosystem including food web biomass dynamics	16
Bush encroachment with climate change in protected and communal areas: A species distribution modelling approach	16
Species profiles support recommendations for quality filtering of opportunistic citizen science data	16
Emergy ecological footprint analysis of Yaghooti grape production in the Sistan region of Iran	16
Spatial mechanistic modelling to simulate movements and contacts between wildlife and livestock in Southern Africa	15
A Monte-Carlo based 3-D ballistics model for guiding bat carcass surveys using environmental and turbine operational data	15
Parameter sensitivity and transferability for simulating ET and GPP of Dryland ecosystems across a climate gradient	15
Dynamic energy budget modelling of anuran metamorphosis	15
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Modeling of the spread of non-adaptive traits in a natural population due to self-compatibility	15
Demystifying Monte Carlo methods in R: A guide from Metropolis–Hastings to Hamiltonian Monte Carlo with biological growth equation examples	15
Uncertainty in forecasting land cover land use at a watershed scale: Towards enhanced sustainable land management	15
Framing settlement systems as spatial adaptive systems	15
Informing Surveillance through the Characterization of Outbreak Potential of Chronic Wasting Disease in White-Tailed Deer	15
The landscape altered the interaction between vegetation and climate in the desert oasis of Hotan River Basin, Xinjiang, China	15
On the evolution of dispersal strategies under the costs of acquisition of private and social information	15
Ecological effect of seasonally changing temperature on the life cycle of Aurelia aurita	15
Effects of temperature and salinity on growth of Aurelia aurita	14
An individual-based model for exploration of population and stock dynamics in marine fishes	14
Canary palms in rural areas as invasion bridges: Exploring simulated red palm weevil spread across date palm plantations	14
Comparing distribution of harbour porpoise using generalized additive models and hierarchical Bayesian models with integrated nested laplace approximation	14
Modelling system dynamics as a socio-ecological perspective to support human-beaver interactions	14
Is toxicity a curse or blessing, or both?—Searching answer from a disease-induced consumer-resource system	14
Modeling the life cycle of four types of phytoplankton and their bloom mechanisms in a benthic-pelagic coupled ecosystem	14
Simulating critical nutrient loadings of regime shift in the shallow plateau Lake Dianchi	13
Modeling soil carbon accumulation in irrigated agricultural systems	13
Understanding plankton ecosystem dynamics under realistic micro-scale variability requires modeling at least three trophic levels	13
Moths exhibit strong memory among cooperative species of other taxonomic groups: An empirical study	13
Analyzing sustainable development strategies through multi-method integration in the Green Economy Model	13
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Field-scale simulation of runoff and water quality in a paddy field: A study of novel RWQSPad model	13
Identifying optimal cloud cover for enhanced forest carbon uptake: Periodic-case NEE-overshoot modelling	13
Simulation of N2O emissions from greenhouse vegetable production under different management systems in North China	13
New applications of an old individual-based model for biological dynamics	13
Correlated Random Walk of tuna in arrays of Fish Aggregating Devices: A field-based model from passive acoustic tagging	13
When does artificial intelligence replace process-based models in ecological modelling?	13
A hierarchical Bayesian approach for incorporating expert opinions into parametric survival models: A case study of female Ixodes ricinus ticks exposed to various temperature and relative humidity con	12
Does climate change stimulate citizens' responses to conserving urban forest? Insights from stimulus-organism-response theory	12
Comparing commonly used aquatic habitat modeling methods for native fish	12
A multispecies size-structured matrix model incorporating seasonal dynamics	12
Coefficients of association between nominal and fully ranked ordinal variables with applications to ecological network analysis	12
Real world data for real world problems: Importance of appropriate spatial resolution modelling to inform decision makers in marine management	12
Sector aggregation effect on embodied carbon emission based on city-centric global multi-region input-output (CCG-MRIO) model	12
Dynamic evolution and simulation of habitat quality in arid regions: A case study of the Hexi region, China	12
An exploration of solar-induced chlorophyll fluorescence (SIF) factors simulated by SCOPE for capturing GPP across vegetation types	12
A spatially explicit model of tree leaf litter accumulation in fire maintained longleaf pine forests of the southeastern US	12
Using Hidden Markov Models to develop ecosystem indicators from non-stationary time series	12
DiaThor: R package for computing diatom metrics and biotic indices	12
Multiscale habitat suitability modeling for a threatened raptor offers insight into ecological model transferability	12
The impact of dynamic wind flow behavior on forest fire spread using cellular automata: Application to the watershed BOUKHALEF (Morocco)	12
A quantitative application of diffusion of innovations for modeling the spread of conservation behaviors	12
Modelling the effects of urbanization on nutrients pollution for prospective management of a tropical watershed: A case study of Skudai River watershed	11
Predicting shifts in demography of Orbicella franksi following simulated disturbance and restoration	11
A data-driven high spatial resolution model of biomass accumulation and crop yield: Application to a fragmented desert-oasis agroecosystem	11
Decoding information in multilayer ecological networks: The keystone species case	11
Corrigendum to ‘Modeling mixoplankton along the biogeochemical gradient of the Southern North Sea’ Ecological Modelling 458 (2021) 0304-3800/109690	11
Growth acceleration is the key for identifying the most favorable food concentration of Artemia sp.	11
Attractor of a neutral individual-based forest model captures spatiotemporal structure characteristics of a mature tropical forest	11
Insights into the environmental conditions contributing to variability in the larval recruitment of the tropical sardine Sardinella lemuru	11
The emergence of imperfect philopatry and fidelity in spatially and temporally heterogeneous environments	11
Preparing for and managing crown-of-thorns starfish outbreaks on reefs under threat from interacting anthropogenic stressors	11
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Controls and characteristics of biomass quantization in size-structured planktonic ecosystem models	11
A new interval meta-goal programming for sustainable planning of agricultural water-land use nexus	11
The application of a plant community model to evaluate adaptation strategies for alleviating climate change impacts on grassland productivity, biodiversity and forage quality	11
Self-healing time of population under dynamic disturbance	11
Modeling terrestrial net ecosystem exchange using machine learning techniques based on flux tower measurements	11
Quantitative evaluation of the effects of bycatch on native species using mathematical models	10
Development of models for sustainable green mussel cultivation under climate change events	10
Dryland vegetation pattern dynamics driven by inertial effects and secondary seed dispersal	10
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Impact of different invasion methods of invasive species on omnivorous food webs	10
Impacts of land-use intensity on ecosystems stability	10
Corrigendum to "Comparing the performance of global, geographically weighted and ecologically weighted species distribution models for Scottish wildcats using GLM and Random Forest predictive modeling	10
Sampling effort required for fitting spatially explicit models of species distribution dynamics	10
Spatiotemporal changes of ecosystem services value by incorporating planning policies: A case of the Pearl River Delta, China	10
How much is enough? Optimizing beehive stocking densities to maximize the production of a pollinator-dependent crop	10
Fungal pathogen transmission dynamics in North American salamanders: Mathematical insights for disease management	10
Potential thermal safety margin for plant photosynthesis derived from local temperature variability	10

Combined climate and regional mosquito habitat model based on machine learning	9
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Population projections from holey matrices: Using prior information to estimate rare transition events	9
Production potential of seaweed and shellfish integrated aquaculture in Narragansett Bay (Rhode Island, U.S.) using an ecosystem model	9
Evaluating the skill of correlative species distribution models trained with mechanistic model output	9
Climatic sensitivity of seasonal ice-cover, water temperature and biogeochemical cycling in Lake 239 of the Experimental Lakes Area (ELA), Ontario, Canada	9
A computational model approach to assess the effect of climate change on the growth and development of tadpoles	9
Modeling the temporal dynamics of gut microbiota from a local community perspective	9
Transient perturbations reveal distinct strategies for reserve benefits in life history-dependent ecosystems	9
Modeling the effect of habitat availability and quality on endangered winter-run Chinook salmon (Oncorhynchus tshawytscha) production in the Sacramento Valley	9
Landscape-scale drivers of endangered Cape Sable Seaside Sparrow (Ammospiza maritima mirabilis) presence using an ensemble modeling approach	9
Climate covariate selection influences MaxEnt model predictions and predictive accuracy under current and future climates	9
Using system equalization principle to study the effects of multiple factors to the development of bee colony	9
The integration of hierarchical levels of scale in tree species distribution models of silver fir (Abies alba Mill.) and European beech (Fagus sylvatica L.) in mountain forests	9
Ecological flow considering hydrological season and habitat suitability for a variety of fish	9
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Improving forest gross primary productivity estimation through climate and trait integration	9
Integrating metabolic scaling variation into the maximum entropy theory of ecology explains Taylor's law for individual metabolic rate in tropical forests	9
Which rice farming system is more environmentally friendly in Khuzestan province, Iran? A study based on emergy analysis	9
Modeling investigation of the nutrients and phytoplankton dynamics in the Moroccan Atlantic coast: A case study of Agadir coast	9
Bayesian multi-level calibration of a process-based maize phenology model	9
Changes in algal bloom dynamics in a regulated large river in response to eutrophic status	9
Effect of study area extent on the potential distribution of Species: A case study with models for Raoiella indica Hirst (Acari: Tenuipalpidae)	9
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Bifurcation analysis and global dynamics in a predator–prey system of Leslie type with an increasing functional response	9
Landscape ecology and urban spatial configuration: Exploring a methodological relationship. Application in Pelotas, Brazil	9
Multi-objective optimization of forest ecosystem services under uncertainty	9
Modeling Tree Recovery in Wind-Disturbed Forests with Dense Understory Species under Climate Change	9
Productivity-environment models for Scots pine plantations in Bulgaria: an interaction of anthropogenic origin peculiarities and climate change	9
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Using a time-dynamic food web model to compare predation and fishing mortality in Pleuroncodes monodon (Galatheidae: Crustaceae) and other benthic and demersal resource species off central Chile	9
Temporal transferability of species abundance models to study the changes of breeding bird species based on land cover changes	9
Sustainable development of territorial units: MCDM approach with optimal tail selection	9
Fish survival subject to algal bloom: Resource-based growth models with algal digestion delay and detritus-nutrient recycling delay	9
Disentangling the relative influence of regeneration processes on marsh plant assembly with a stage-structured plant assembly model	9
Analysis of the sustainability index for ecologically low-input integrated farming: A comprehensive assessment of environmental, economic, and social impact	9
Modeling urban growth effects on carrying capacity in arid and semi-arid regions using system dynamics	9
Modeling food dependent symbiosis in Exaiptasia pallida	9
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A GIS-based approach for managing catch-and-release fisheries	9
Analysis of a mathematical model for golden mussels infestation	9
System evolution model of human disturbances in panda habitats	9
Spatial structure of natural boxwood and the invasive box tree moth can promote coexistence	8
Constructing time-series submerged aquatic vegetation by integrating process-based modeling and satellite images	8
Information sharing promotes bacterial diversity in oligotrophic environment with low-dose X-ray radiation based on modeling and simulation of agent-based model	8
LoggingLab: An R package to simulate reduced-impact selective logging in tropical forests using forest inventory data	8
Using GIS-based multicriteria decision analysis to prioritize invasive plant treatment: A creative solution for a pernicious problem	8
Modelling parasite-produced marine diseases: The case of the mass mortality event of Pinna nobilis	8
Simulating implications of fish behavioral response for managing hypoxia in estuaries with spatial dissolved oxygen variability	8
Are maximum yields sustainable? Effect of intra-annual time-scales on MSY, stability and resilience	8
The influence of phytoplankton size fractions on the carbon export ratio in the surface ocean	8
Modelling the spatial shifts of functional groups in the Barents Sea using a climate-driven spatial food web model	8
Modelling farmland dynamics in response to farmer decisions using an advanced irrigation-related agent-based model	8
Using the ODD protocol and NetLogo to replicate agent-based models	8
Nonlinear impacts of climate change on dengue transmission in mainland China: Underlying mechanisms and future projection	8
Toward a better understanding of forest spatial patterns:A generalisation of the uniform angle index	8
Integrating equity and justice in marine ecosystem models: An incremental but meaningful approach	8
Investigating the need to replace the conventional method of sugar beet production in lorestan province, iran based on the arguments obtained from emergy calculations	8
Development of interval transient pollution distribution model and its application in the Fenghuangshan drinking water source	8
Diffusivity and bias movement velocity of Cryptolestes ferrugineus (Coleoptera: Laemophloeidae) adults under different temperature and moisture differences	8
Assessing bivalve growth using bio-energetic models	8
The potential impacts of climate change on the distribution of key tree species and Cordyceps in Bhutan: Implications for ecological functions and rural livelihoods	8
Contrasting occupancy models with presence-only models: Does accounting for detection lead to better predictions?	8
Using the roughness height and manning number in hydrodynamic model to estimate the impact of intensive oyster aquaculture by floating & fixed rafts on water exchange with an application in Qinzho	8
Methods for comparing theoretical models parameterized with field data using biological criteria and Sobol analysis	8
Growing at the edge: Modelling sapling colonization, performance, and effective range of mountain birch (Betula pubescens ssp. tortuosa)	8
Analytical model for pullout behavior of root system	8
Evolution of the concept of ecological integrity and its study through networks	8
Investigating the interactions between Chinese economic growth, energy consumption and its air environmental cost during 1989–2016 and forecasting their future trends	8
Model-based experiments as epistemic evidence in paleoecology	8
Emergy theory to quantify the sustainability of large cascade hydropower projects in the upper Yangtze	8
Computational assessment of Amazon forest plots regrowth capacity under strong spatial variability for simulating logging scenarios	8
Resilience, indirect effects and cycling in ecological networks	8
Multi-sectoral analysis of smarter urban nitrogen metabolism: A case study of Suzhou, China	8
Forecasting impacts of biological control under future climates: mechanistic modelling of an aphid pest and a parasitic wasp	8
Spatiotemporal evolution of county level ecological security based on an emergy ecological footprint model: The case of Dingxi, China	8
The metabolic interpretation of the von Bertalanffy growth rate	7
A general DDE framework to describe insect populations: Why delays are so important?	7
How can oak regeneration in the Leipzig Floodplain Forest be effectively supported by femel plantations? Application of a demographic forest model	7
Dynamics of a coupled socio-environmental model: An application to global CO2 emissions	7
Adapting a dynamic system model using life traits and local fishery knowledge — Application to a population of exploited marine bivalves (Ruditapes philippinarum) in a mesotidal coastal lagoon	7
An integrated analysis for estimation of survival, growth, and movement of unmarked juvenile anadromous fish	7
Predicting restoration and aquaculture potential of eastern oysters through an eco-physiological mechanistic model	7
Fine-scale surface complexity promotes temperature extremes but reduces the spatial extent of refugia on coastal rocks	7
Overcoming conceptual hurdles to accurately represent trees as cohorts in forest landscape models	7
Understanding predator-prey-competitor dynamics between Lower Missouri River Macrhybopsis and Scaphirhynchus using a population—bioenergetics model ensemble	7
Dynamic distribution modelling using a native invasive species, the mountain pine beetle	7
Stability analysis and Hopf bifurcation of a brown planthopper–rice model under the effect of monsoon	7
Modelling peatland development in high-boreal Quebec, Canada, with DigiBog_Boreal	7
Estimating natural nitrous oxide emissions from the Qinghai–Tibetan Plateau using a process-based model: Historical spatiotemporal patterns and future trends	7
The role of squid for food web structure and community-level metabolism	7
Modeling water quality and cyanobacteria blooms in Lake Okeechobee: I. Model descriptions, seasonal cycles, and spatial patterns	7
Integrated SSP-RCP Scenarios for Modeling the Impacts of Climate Change and Land Use on Ecosystem Services in East Africa	7
A Bayesian network with fuzzy mathematics for species habitat suitability analysis: A case with limited Angelica sinensis (Oliv.) Diels data	7
Modelling human influences on biodiversity at a global scale–A human ecology perspective	7