Ecological Modelling

Article	Citations
Want to model a species niche? A step-by-step guideline on correlative ecological niche modelling	116
Estimating species distributions from spatially biased citizen science data	79
Spatial cross-validation is not the right way to evaluate map accuracy	77
Dealing with overprediction in species distribution models: How adding distance constraints can improve model accuracy	69
Challenges, tasks, and opportunities in modeling agent-based complex systems	59
Projecting effects of land use change on human well-being through changes in ecosystem services	54
Predicting lake surface water phosphorus dynamics using process-guided machine learning	48
A model of Sustainable Development Goals: Challenges and opportunities in promoting human well-being and environmental sustainability	48
A functional size-spectrum model of the global marine ecosystem that resolves zooplankton composition	44
Spatiotemporal differentiation of coupling coordination degree between economic development and water environment and its influencing factors using GWR in China's province	42
Modeling interactions among multiple ecosystem services. A critical review	41
Improving species distribution model predictive accuracy using species abundance: Application with boosted regression trees	40
A Production–Living–Ecological Space Model for Land-Use Optimisation: A case study of the core Tumen River region in China	40
Water-energy nexus: The origin, development and prospect	38
Temperature coefficient (Q10) and its applications in biological systems: Beyond the Arrhenius theory	36
Presence-only species distribution models are sensitive to sample prevalence: Evaluating models using spatial prediction stability and accuracy metrics	35
Dynamic simulation patterns and spatiotemporal analysis of land-use/land-cover changes in the Wuhan metropolitan area, China	34
Long-term assessment of land-use and climate change on water scarcity in an arid basin in Iran	34
Determining agricultural suitable land in peri-urban geography using GIS and Multi Criteria Decision Analysis (MCDA) techniques	33
Ecosystem-scale nutrient cycling responses to increasing air temperatures vary with lake trophic state	33
Operationalising resilience: A methodological framework for assessing urban resilience through System Dynamics Model	33
Microclimc: A mechanistic model of above, below and within-canopy microclimate	33
Socio-ecological determinants of multiple ecosystem services on the Mediterranean landscapes of the Ionian Islands (Greece)	32
The Chesapeake Bay program modeling system: Overview and recommendations for future development	29
A global-scale ecological niche model to predict SARS-CoV-2 coronavirus infection rate	29

Evaluation of the sustainability of four greenhouse vegetable production ecosystems based on an analysis of emergy and social characteristics”	29
Rice plant disease classification using dilated convolutional neural network with global average pooling	29
Simulated growth and reproduction of green turtles (Chelonia mydas) under climate change and marine heatwave scenarios	28
Spatial estimation of outdoor NO2 levels in Central London using deep neural networks and a wavelet decomposition technique	27
Evaluating old community renewal based on emergy analysis: A case study of Nanjing	27
Marine natural capital and ecosystem services: An environmental accounting model	27
Modelling the effect of accelerated forest management on long-term wildfire activity	25
Agricultural land use and the sustainability of social-ecological systems	25
The impact of data quality filtering of opportunistic citizen science data on species distribution model performance	24
Modelling the contribution of ephemeral wetlands to landscape connectivity	23
Impact of environmental variability on Pinctada margaritifera life-history traits: A full life cycle deb modeling approach	22
Assessment and a review of research on surface water quality modeling	22
Adaptability analysis of water pollution and advanced industrial structure in Jiangsu Province, China	21
A dynamic energy budget model for small yellow croaker Larimichthys polyactis: Parameterisation and application in its main geographic distribution waters	20
Facilitation and competition reduction in tree species mixtures in Central Europe: Consequences for growth modeling and forest management	20
Modelling Forest Ecosystems: a crossroad between scales, techniques and applications	20
An improved estimation of net primary productivity of grassland in the Qinghai-Tibet region using light use efficiency with vegetation photosynthesis model	20
Sensitivity analysis using Morris: Just screening or an effective ranking method?	20
Modelling the effects of energy taxes on ecological footprint transfers in China's foreign trade	19
Ecological carrying capacity and sustainability assessment for coastal zones: A novel framework based on spatial scene and three-dimensional ecological footprint model	19
Using species distribution models only may underestimate climate change impacts on future marine biodiversity	19
The Canadian model for peatlands (CaMP): A peatland carbon model for national greenhouse gas reporting	19
Modelling prey-predator interactions in Messina beachrock pools	19
Suitable habitat mathematical model of common reed (Phragmites australis) in shallow lakes with coupling cellular automaton and modified logistic function	19
Conducting reproducible ecosystem modeling using the open source mass balance model Rpath	18
Modelling the control of Aedes albopictus mosquitoes based on sterile males release techniques in a tropical environment	18
Research progress and hotspot analysis for reactive nitrogen flows in macroscopic systems based on a CiteSpace analysis	18
Assessing natural capital value in marine ecosystems through an environmental accounting model: A case study in Southern Italy	18
Ocean acidification and dynamic energy budget models: Parameterisation and simulations for the green-lipped mussel	18
Study on turbidity prediction method of reservoirs based on long short term memory neural network	18
Extending community trajectory analysis: New metrics and representation	18
Environmental convergence and environmental Kuznets curve: A unified empirical framework	18
Modeling air quality regulation by green infrastructure in a Mediterranean coastal urban area: The removal of PM10 in the Metropolitan City of Naples (Italy)	17
Modeling the Growth of Sugar Kelp (Saccharina latissima) in Aquaculture Systems using Dynamic Energy Budget Theory	17
Investigating the impact of the mycorrhizal inoculum on the resident fungal community and on plant growth	17
Sensitivity of Vegetation Growth to Precipitation in a Typical Afforestation Area in the Loess Plateau: Plant-Water Coupled Modelling	17
Generalized stability conditions for host–parasitoid population dynamics: Implications for biological control	17
Modeling dissolved inorganic carbon considering submerged aquatic vegetation	17
The coordination between maritime economies and marine carrying capacity and their spatiotemporal evolution in the cities of the bohai rim in china	17
Changes in soil carbon stocks under plantation systems and natural forests in Northeast India	17
Spatiotemporal changes of ecosystem services value by incorporating planning policies: A case of the Pearl River Delta, China	17
A mathematical model for Xylella fastidiosa epidemics in the Mediterranean regions. Promoting good agronomic practices for their effective control.	17
A spatial bayesian-network approach as a decision-making tool for ecological-risk prevention in land ecosystems	17
The effect of tourism on teleconnected ecosystem services and urban sustainability: An emergy approach	17
Estimating slope stability by the root reinforcement mechanism of Artemisia sacrorum on the Loess Plateau of China	16
The effect of green roofs on the reduction of mortality due to heatwaves: Results from the application of a spatial microsimulation model to four European cities	16
Spatial conservation planning under uncertainty using modern portfolio theory and Nash bargaining solution	16
The impact of converting waste into resources on the regional economy, evidence from Poland	16
Effects of swimming behaviour and oceanography on sea turtle hatchling dispersal at the intersection of two ocean current systems	16
Integrated impacts of vegetation and soil type on slope stability: A case study of Kheyrud Forest, Iran	16

The standard dynamic energy budget model has no plausible alternatives	16
Modeling lives saved from extreme heat by urban tree cover✰	16
Ecological risk assessment of heavy metal contamination of mining area soil based on land type changes: An information network environ analysis	16
A temperature- and photoperiod-driven model reveals complex temporal population dynamics of the invasive box tree moth in Europe	15
The MANgrove–GroundwAter feedback model (MANGA) – Describing belowground competition based on first principles	15
Defaunation and changes in climate and fire frequency have synergistic effects on aboveground biomass loss in the brazilian savanna	15
Insights on integrating habitat preferences in process-oriented ecological models – a case study of the southern North Sea	15
Comparing maximum entropy modelling methods to inform aquaculture site selection for novel seaweed species	15
Population dynamics of Varroa mite and honeybee: Effects of parasitism with age structure and seasonality	15
Modelling the effectiveness of collaborative schemes for disease and pest outbreak prevention	15
A new nearest-neighbour index for monitoring spatial size diversity: The hyperbolic tangent index	15
Modeling soil porewater salinity in mangrove forests (Everglades, Florida, USA) impacted by hydrological restoration and a warming climate	15
Modelling the trophic roles of the demersal Chondrichthyes in the Northern Ionian Sea (Central Mediterranean Sea)	15
A dynamic growth model of Ulva prolifera: Application in quantifying the biomass of green tides in the Yellow Sea, China	14
A scenario-based approach to tackle trade-offs between biodiversity conservation and land use pressure in Central Italy	14
Dynamic optimal ration size in tilapia culture: Economic and environmental considerations	14
Impacts of climate change on biological rotation of Larix olgensis plantations for timber production and carbon storage in northeast China using the 3-PGmix model	14
Changes in algal bloom dynamics in a regulated large river in response to eutrophic status	14
Environmental and behavioral controls on juvenile Chinook salmon migration pathways in the Columbia River estuary	14
Energetics as common currency for integrating high resolution activity patterns into dynamic energy budget-individual based models	14
Modelling the interactions between landscape structure and spatio-temporal dynamics of pest natural enemies: Implications for conservation biological control	14
Agroecological modeling of nitrogen and carbon transfers between decomposer micro-organisms, plant symbionts, soil and atmosphere in an intercropping system	14
Sustainable agriculture, food security and diet diversity. The case study of Tuscany, Italy.	14
Improving confidence in complex ecosystem models: The sensitivity analysis of an Atlantis ecosystem model	14
Ecosystem based multi-species management using Empirical Dynamic Programming	14
A spatially explicit population model to compare management using culling and fertility control to reduce numbers of grey squirrels	14
A hierarchical framework for mapping pollination ecosystem service potential at the local scale	14
A curated list of R packages for ecological niche modelling	14
The energetic basis of population growth in animal kingdom	14
Searching for ecology in species distribution models in the Himalayas	14
Integrated ecosystem impacts of climate change and eutrophication on main Baltic fishery resources	14
The economics of territory selection	13
Agroecological food web modelling to evaluate and design organic and conventional agricultural systems	13
Integrating dynamic plant growth models and microclimates for species distribution modelling	13
Farm monitoring and disease prediction by classification based on deep learning architectures in sustainable agriculture	13
A box-model of carrying capacity of the Thau lagoon in the context of ecological status regulations and sustainable shellfish cultures	13
Integrating uncertain prior knowledge regarding ecological preferences into multi-species distribution models: Effects of model complexity on predictive performance	13
Fine-tuning niche models matters in invasion ecology. A lesson from the land planarian Obama nungara.	13
Fully Convolutional Neural Network: A solution to infer animal behaviours from multi-sensor data	13
Movement, models, and metabolism: Individual-based energy budget models as next-generation extensions for predicting animal movement outcomes across scales	12
Quantitative food web modeling unravels the importance of the microphytobenthos-meiofauna pathway for a high trophic transfer by meiofauna in soft-bottom intertidal food webs.	12
Global assessment of marine phytoplankton primary production: Integrating machine learning and environmental accounting models	12
Mathematical comparison and empirical review of the Monod and Droop forms for resource-based population dynamics	12
Coronavirus outbreak is a symptom of Gaia's sickness	12
High spatial resolution bioclimatic variables to support ecological modelling in a Mediterranean biodiversity hotspot	12
Modelling of land-use/cover change trajectories in a transboundary catchment of the Sio-Malaba-Malakisi Region in East Africa using the CLUE-s model	12
Exploring trophic interactions and cascades in the Baltic Sea using a complex end-to-end ecosystem model with extensive food web integration	12
A novel spatio-temporal cellular automata model coupling partitioning with CNN-LSTM to urban land change simulation	12
RESTREND-based assessment of factors affecting vegetation dynamics on the Mongolian Plateau	12
The use of augmented loss functions for estimating dynamic energy budget parameters	12
The impact of intensive management on net ecosystem productivity and net primary productivity of a Lei bamboo forest	12
Estimating the fundamental niche: Accounting for the uneven availability of existing climates in the calibration area	12
An Ecopath with Ecosim model for the Pacific coast of eastern Japan: Describing the marine environment and its fisheries prior to the Great East Japan earthquake	12
Socio-ecological systems modelling of coastal urban area under a changing climate – Case study for Ubatuba, Brazil	11
Modeling Potential production and yield gap of potato using modelling and GIS approaches	11
Using the Dynamic Energy Budget theory to evaluate the bioremediation potential of the polychaete Hediste diversicolor in an integrated multi-trophic aquaculture system	11
Modelling human influences on biodiversity at a global scale–A human ecology perspective	11
Sustainability assessment of agriculture production systems in Pakistan: A provincial-scale energy-based evaluation	11
The hitchhiker's guide to generic ecological-economic modelling of land-use-based biodiversity conservation policies	11
Changes in sessile oak (Quercus petraea) productivity under climate change by improved leaf phenology in the 3-PG model	11
Assessing the sensitivity of three Alaska marine food webs to perturbations: an example of Ecosim simulations using Rpath	11
Effect of feedback loops on the sustainability and resilience of human-ecosystems	11
Habitat succession of the Yangtze finless porpoise in Poyang Lake under the changing hydrodynamic and feeding environment	11
Embedding ecological knowledge into artificial neural network training: A marine phytoplankton primary production model case study	11
Disentangling the biotic and abiotic drivers of emergent migratory behavior using individual-based models	11
Critical connectivity thresholds and the role of temperature in parasite metapopulations	11
Competitive superiority of N-fixing cyanobacteria when fixed N is scarce: Reconsiderations based on a model with heterocyst differentiation	11
Modelling population dynamics based on experimental trials with genetically modified (RIDL) mosquitoes	11
A simple modelling tool for assessing interaction with host and local infestation of sea lice from salmonid farms on wild salmonids based on processes operating at multiple scales in space and time	10
A general ODE-based model to describe the physiological age structure of ectotherms: Description and application to Drosophila suzukii	10
Understanding resilience of farming systems: Insights from system dynamics modelling for an arable farming system in the Netherlands	10
Modeling structural mechanics of oyster reef self-organization including environmental constraints and community interactions	10
Spatial E-PSR modelling for ecological sensitivity assessment for arid rangeland resilience and management	10
Improving species distribution models for dominant trees in climate data-poor forests using high-resolution remote sensing	10
Exploring the option space for land system futures at regional to global scales: The diagnostic agro-food, land use and greenhouse gas emission model BioBaM-GHG 2.0	10
High-resolution PVA along large environmental gradients to model the combined effects of climate change and land use timing: lessons from the large marsh grasshopper	10
Utilizing machine learning for detecting flowering in mid-range digital repeat photography	10
Performance of a process-based model for predicting robusta coffee yield at the regional scale in Vietnam	10
Computer simulation modelling of the simultaneous adsorption of Cd, Cu and Cr from aqueous solutions by agricultural clay soil: A PHREEQC geochemical modelling code coupled to parameter estimation (PE	10
Modeling watershed carbon dynamics as affected by land cover change and soil erosion	10

Examining spatial carbon metabolism: Features, future simulation, and land-based mitigation	10
Species-specific nature conservation prioritization (a combination of MaxEnt, Co$ting Nature and DINAMICA EGO modeling approaches)	10
Review of application of EPIC crop growth model	10
Estimating the Value of Global Ecosystem Structure and Productivity: A Geographic Information System and Emergy Based Approach	10
Choice of climate data affects the performance and interpretation of species distribution models.	10
Influences of traits and processes on productivity and functional composition in grasslands: A modeling study	10
Combined climate and regional mosquito habitat model based on machine learning	10
Effects of non-representative sampling design on multi-scale habitat models: flammulated owls in the Rocky Mountains.	10
Modeling dissolved oxygen in a crab pond	9
Individual-based 3D modelling of root systems in heterogeneous plant canopies at the multiannual scale. Case study with a weed dynamics model	9
Mini-review of process-based food web models and their application in aquatic-terrestrial meta-ecosystems	9
Reflections of two systems ecologists on modelling coupled human and natural (socio-ecological, socio-environmental) systems	9
Estimating dynamics of central hardwood forests using random forests	9
Integrated modelling of insect population dynamics at two temporal scales	9
Multiple working hypotheses for hyperallometric reproduction in fishes under metabolic theory	9
Predicting geographic distributions of fishes in remote stream networks using maximum entropy modeling and landscape characterizations	9
Projections of algae, eelgrass, and zooplankton ecological interactions in the inner Salish Sea – for future climate, and altered oceanic states	9
Evaluating five forest models using multi-decadal inventory data from mountain forests	9
Can DEB models infer metabolic differences between intertidal and subtidal morphotypes of the Antarctic limpet Nacella concinna (Strebel, 1908)?	9
The impact analysis of media attention on local environmental governance based on four-party evolutionary game	9
Comparative study of two predatory mites Amblyseius swirskii Athias-Henriot and Transeius montdorensis (Schicha) by predator-prey models for improving biological control of greenhouse cucumber	9
A spatially extended model to assess the role of landscape structure on the pollination service of Apis mellifera	9
A dynamic energy budget model of Fenneropenaeus chinensis with applications for aquaculture and stock enhancement	9
A physical-biological coupled ecosystem model for integrated aquaculture of bivalve and seaweed in sanggou bay	9
Ecophysics reload—exploring applications of theoretical physics in macroecology	9
The water footprint of city naturalisation. Evaluation of the water balance of city gardens	9
Dynamic energy budget of endemic and critically endangered bivalve Pinna nobilis: A mechanistic model for informed conservation	9
General Landscape Connectivity Model (GLCM): a new way to map whole of landscape biodiversity functional connectivity for operational planning and reporting	9
Assessing errors during simulation configuration in crop models – A global case study using APSIM-Potato	9
Model laboratories: A quick-start guide for design of simulation experiments for dynamic systems models	9
Ecological network identification and connectivity robustness evaluation in the Yellow River Basin under a multi-scenario simulation	9
Sequential Monte-Carlo algorithms for Bayesian model calibration – A review and method comparison✰	9
Building shading affects the ecosystem service of urban green spaces: Carbon capture in street canyons	9
AgentSeal: Agent-based model describing movement of marine central-place foragers	9
Modeling terrestrial net ecosystem exchange using machine learning techniques based on flux tower measurements	9
A hierarchical Bayesian approach for incorporating expert opinions into parametric survival models: A case study of female Ixodes ricinus ticks exposed to various temperature and relative humidity con	8
Agent-based modelling of juvenile eel migration via selective tidal stream transport	8
Quantifying the GCM-related uncertainty for climate change impact assessment of rainfed rice production in Cambodia by a combined hydrologic - rice growth model	8
A process-based model to forecast risk of potato late blight in Norway (The Nærstad model): model development, sensitivity analysis and Bayesian calibration	8
State- and context-dependent applications of an energetics model in free-ranging bighorn sheep	8
The impact of seasonal regulation of metabolism on the life history of Antarctic krill	8
Reformulation of the Distributed Delay Model to describe insect pest populations using count variables	8
A less data demanding ecophysiological niche modeling approach for mammals with comparison to conventional correlative niche modeling	8
Contrasting occupancy models with presence-only models: Does accounting for detection lead to better predictions?	8
Integration of local knowledge and data for spatially quantifying ecosystem services in the Hoeksche Waard, the Netherlands	8
Cautions in weighting individual ecological niche models in ensemble forecasting	8
A new parametric measure of functional dissimilarity: Bridging the gap between the Bray-Curtis dissimilarity and the Euclidean distance	8
Three-dimensional biogeochemical modeling of eutrophication in Edmonton stormwater ponds	8
Potential elevation shift of oriental beech (Fagus orientalis L.) in Hyrcanian mixed forest ecoregion under future global warming	8
Assessing the impacts of agricultural conservation practices on freshwater biodiversity under changing climate	8
The impacts of vegetation on the soil surface freezing-thawing processes at permafrost southern edge simulated by an improved process-based ecosystem model	8
Assessing the dynamics of hybridization through a matrix modelling approach	8
Investigating the interactions between Chinese economic growth, energy consumption and its air environmental cost during 1989–2016 and forecasting their future trends	8
Contribution of a bioenergetics model to investigate the growth and survival of European seabass in the Bay of Biscay – English Channel area	8
Quantifying tradeoffs between electricity generation and fish populations via population habitat duration curves	8
Sensitivity of aboveground biomass and species composition to climate change in boreal forests of Northeastern China	8
Kinetics of phosphate uptake in the dinoflagellate Karenia mikimotoi in response to phosphate stress and temperature	8
Factors controlling long-term carbon dioxide exchange between a Douglas-fir stand and the atmosphere identified using an artificial neural network approach	8
Ability of the APSIM Next Generation Eucalyptus model to simulate complex traits across contrasting environments	8
Forecasting Pacific saury (Cololabis saira) fishing grounds off Japan using a migration model driven by an ocean circulation model	8
Key factors affecting discharge, soil erosion, nitrogen and phosphorus exports from agricultural polder	8
DynaGraM: A process-based model to simulate multi-species plant community dynamics in managed grasslands	8
Simulating the effects of aquatic avifauna on the Phosphorus dynamics of aquatic systems	8
An individual-based model to assess the spatial and individual heterogeneity of Brucella melitensis transmission in Alpine ibex	8
A consistent calibration across three wheat models to simulate wheat yield and phenology in China	8
Construction of ecological security pattern based on ecological carrying capacity assessment 1990–2040: A case study of the Southwest Guangxi Karst - Beibu Gulf	8
An agent-based model to simulate the boosted Sterile Insect Technique for fruit fly management	8
Modelling the impact of climate change and tillage practices on soil CO2 emissions from dry farmland in the Loess Plateau of China	8
The comparative energetics of petrels and penguins	8
Quantifying the cost-effectiveness of nutrient-removal strategies for a lowland rural watershed: Insights from process-based modeling	8
Performance comparison of sewage treatment plants before and after their upgradation using emergy evaluation combined with economic analysis: A case from Southwest China	7
Using structural equation modeling to better understand microcystis biovolume dynamics in a mediterranean hypereutrophic reservoir	7
A dynamic biomass model of emergent aquatic vegetation under different water levels and salinity	7
Impacts of nitrogen addition on nitrous oxide emission: Comparison of five nitrous oxide modules or algorithms	7
Estimating and comparing biodiversity with a single universal metric	7
Spatial structure of natural boxwood and the invasive box tree moth can promote coexistence	7
A tritrophic interaction model for an olive tree pest, the olive moth — Prays oleae (Bernard)	7
Investigation of ecologically relevant wind patterns on Marion Island using Computational Fluid Dynamics and measured data	7
A coupled ecohydrodynamic model to predict algal blooms in Lake Titicaca	7
Modelling the effects of climate, predation, and dispersal on the poleward range expansion of black mangrove (Avicennia germinans)	7
Optimization of deep learning model for coastal chlorophyll a dynamic forecast	7
A comparison of machine learning and statistical species distribution models: Quantifying overfitting supports model interpretation	7
An early warning sign: trophic structure changes in the oceanic Gulf of Mexico from 2011—2018	7
The increasing contribution of greening to the terrestrial evapotranspiration in China	7
Identification and analysis of areas prone to conflict with wild boar (Sus scrofa) in the vineyards of Malayer County, western Iran	7
Low breeding performance of the Steller’s sea eagle (Haliaeetus pelagicus) causes the populations to decline	7
Using the standard DEB animal model for toxicokinetic-toxicodynamic analysis	7
TRIPLEX-Mortality model for simulating drought-induced tree mortality in boreal forests: Model development and evaluation	7
Using qualitative network models to assess the influence of mussel culture on ecosystem dynamics	7
Evaluation of spatio-temporal variations in water availability using a process-based eco-hydrology model in arid and semi-arid regions of Mongolia	7
Predicting future patterns, processes, and their interactions: Benchmark calibration and validation procedures for forest landscape models	7
Predicting methane emissions from paddy rice soils under biochar and nitrogen addition using DNDC model	7
Model-based data analysis of the effect of winter mixing on primary production in a lake under reoligotrophication	7
Subnational carbon flow pattern analysis using multi-scale input-output model	7
Proof-of-concept model for exploring the impacts of microplastics accumulation in the Maryland coastal bays ecosystem	7