Journal of Mathematical Biology

Article	Citations
A systematic search for switch-like behavior in type II toxin–antitoxin systems	50
Parameter estimation in fluorescence recovery after photobleaching: quantitative analysis of protein binding reactions and diffusion	50
Individual based models exhibiting Lévy-flight type movement induced by intracellular noise	38
Stability bounds of a delay visco-elastic rheological model with substrate friction	36
Global dynamics of a generalist predator–prey model in open advective environments	35
Occupancy times for time-dependent stage-structured models	33
Macro-scale models for fluid flow in tumour tissues: impact of microstructure properties	32
Homeostatic regulation of renewing tissue cell populations via crowding control: stability, robustness and quasi-dedifferentiation	32
Dynamics of consumer-resource reaction-diffusion models: single and multiple consumer species	29
Influence of electric pulse characteristics on the cellular internalization of chemotherapeutic drugs and cell survival fraction in electroporated and vasoconstricted cancer tissues using boundary ele	27
Nonlinear diffusion in multi-patch logistic model	26
The influence of synaptic plasticity on critical coupling estimates for neural populations	24
Optimal vaccine allocation for the control of sexually transmitted infections	22
Upscaling between an agent-based model (smoothed particle approach) and a continuum-based model for skin contractions	21
Spatiotemporal dynamics induced by intraguild predator diffusion in an intraguild predation model	21
Modelling non-local cell-cell adhesion: a multiscale approach	21
Walk this way: modeling foraging ant dynamics in multiple food source environments	20
Lotka–Volterra model with Allee effect: equilibria, coexistence and size scaling of maximum and minimum abundance	20
Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data	19
Dimensionality reduction via path integration for computing mRNA distributions	19
An integral renewal equation approach to behavioural epidemic models with information index	19
Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view	19
Effectiveness of isolation measures with app support to contain COVID-19 epidemics: a parametric approach	19
On convergence for hybrid models of gene regulatory networks under polytopic uncertainties: a Lyapunov approach	19
Global dynamics of a time-delayed nonlocal reaction-diffusion model of within-host viral infections	18

Competitive dual-strain SIS epidemiological models with awareness programs in heterogeneous networks: two modeling approaches	17
Tumor growth and population modeling in a toxicant-stressed random environment	17
Classes of explicit phylogenetic networks and their biological and mathematical significance	16
A delay model for persistent viral infections in replicating cells	16
Assessment of event-triggered policies of nonpharmaceutical interventions based on epidemiological indicators	16
Adjusting the range of cell–cell communication enables fine-tuning of cell fate patterns from checkerboard to engulfing	15
Global dynamics of a tuberculosis model with age-dependent latency and time delays in treatment	14
Operating diagrams for a three-tiered microbial food web in the chemostat	14
Stoechiometric and dynamical autocatalysis for diluted chemical reaction networks	14
Bifurcation analysis for a single population model with advection	14
Phase-field model of bilipid membrane electroporation	14
Mathematical model for the estrogen paradox in breast cancer treatment	14
A model and a numerical scheme for the description of distribution and abundance of individuals	14
Accessibility percolation on Cartesian power graphs	13
A homeostasis criterion for limit cycle systems based on infinitesimal shape response curves	13
Network transformation-based analysis of biochemical systems	13
The effects of internal forces and membrane heterogeneity on three-dimensional cell shapes	13
Description of chemical systems by means of response functions	13
Spatial cumulant models enable spatially informed treatment strategies and analysis of local interactions in cancer systems	12
Deterministic and stochastic modeling for PDGF-driven gliomas reveals a classification of gliomas	12
A mechanistic derivation of the Monod bioreaction equation for a limiting nutrient	12
A diffusive virus model with a fixed intracellular delay and combined drug treatments	12
Competitive coexistence of seasonal breeders	12
A hierarchical intervention scheme based on epidemic severity in a community network	11
Mathematical properties of pump-leak-cotransport models	11
Persistent prey species in the Lotka–Volterra apparent competition system with a single shared predator	11
The role of Allee effects for Gaussian and Lévy dispersals in an environmental niche	11
Vector-borne disease outbreak control via instant releases	11
A stochastic Farris transform for genetic data under the multispecies coalescent with applications to data requirements	11
Model analysis and data validation of structured prevention and control interruptions of emerging infectious diseases	11
Parameter estimation from single patient, single time-point sequencing data of recurrent tumors	11
The arithmetic topology of genetic alignments	11
Viral dynamics with immune responses: effects of distributed delays and Filippov antiretroviral therapy	10
Classification of infinitesimal homeostasis in four-node input–output networks	10
Threshold behavior and exponential ergodicity of an sir epidemic model: the impact of random jamming and hospital capacity	10
Life history traits and dispersal shape neutral genetic diversity in metapopulations	10
A climate-based model for tick life cycle: positive semigroup theory on Cauchy problem approach	10
Threshold dynamics of a reaction–advection–diffusion schistosomiasis epidemic model with seasonality and spatial heterogeneity	10
Optimal control of an SIR epidemic through finite-time non-pharmaceutical intervention	10
Adaptation in a heterogeneous environment I: persistence versus extinction	10
Scheduling fixed length quarantines to minimize the total number of fatalities during an epidemic	10
Traveling waves of an FKPP-type model for self-organized growth	9
Efficiency functionals for the Lévy flight foraging hypothesis	9
Dynamics and bifurcations in a model of chronic myeloid leukemia with optimal immune response windows	9
Niche differentiation in the light spectrum promotes coexistence of phytoplankton species: a spatial modelling approach	9
Effective population size in simple infectious disease models	9
Ancestral state reconstruction with large numbers of sequences and edge-length estimation	9
A Turing mechanism in order to explain the patchy nature of Crohn’s disease	9
Model selection for assessing the effects of doxorubicin on triple-negative breast cancer cell lines	9
Transmission dynamics of a reaction–advection–diffusion dengue fever model with seasonal developmental durations and intrinsic incubation periods	9

Convective stability of the critical waves of an FKPP-type model for self-organized growth	9
Age-structured modeling of COVID-19 dynamics: the role of treatment and vaccination in controlling the pandemic	9
Locked fronts in a discrete time discrete space population model	9
Correction to: Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model	9
Kinetic models for epidemic dynamics with social heterogeneity	9
General conditions for Turing and wave instabilities in reaction -diffusion systems	9
An algebraic model for inversion and deletion in bacterial genome rearrangement	8
Flow in temporally and spatially varying porous media: a model for transport of interstitial fluid in the brain	8
Mathematical modeling and quantitative analysis of phenotypic plasticity during tumor evolution based on single-cell data	8
Limits of epidemic prediction using SIR models	8
The impact of household structure on disease-induced herd immunity	8
A return-to-home model with commuting people and workers	8
Cannibalistic enemy–pest model: effect of additional food and harvesting	8
Analysis of long transients and detection of early warning signals of extinction in a class of predator–prey models exhibiting bistable behavior	8
Graph-based, dynamics-preserving reduction of (bio)chemical systems	8
Vertex results for the robust analysis of uncertain biochemical systems	7
Confinement tonicity on epidemic spreading	7
Spiracular fluttering decouples oxygen uptake and water loss: a stochastic PDE model of respiratory water loss in insects	7
Single-cell 3D genome reconstruction in the haploid setting using rigidity theory	7
Analysis of dim-light responses in rod and cone photoreceptors with altered calcium kinetics	7
Biological invasion with a porous medium type diffusion in a heterogeneous space	7
The structure of the genetic code as an optimal graph clustering problem	7
An age-dependent immuno-epidemiological model with distributed recovery and death rates	7
The power of Allee effects: inducing multistability and oscillations in a stoichiometric producer-herbivore system	7
A network aggregation model for amyloid-$$\beta $$ dynamics and treatment of Alzheimer’s diseases at the brain scale	7
A hybrid transmission model for Plasmodium vivax accounting for superinfection, immunity and the hypnozoite reservoir	7
Optimal vaccination policy to prevent endemicity: a stochastic model	7
Contact tracing & super-spreaders in the branching-process model	7
Temperature sensitivity of pest reproductive numbers in age-structured PDE models, with a focus on the invasive spotted lanternfly	7
Selective electrical stimulation of low versus high diameter myelinated fibers and its application in pain relief: a modeling study	7
An age-of-infection model with both symptomatic and asymptomatic infections	6
Long-time behavior and Darwinian optimality for an asymmetric size-structured branching process	6
In distributive phosphorylation catalytic constants enable non-trivial dynamics	6
Parasite infection in a cell population: role of the partitioning kernel	6
Theoretical modeling of collaterally sensitive drug cycles: shaping heterogeneity to allow adaptive therapy	6
Temporal optimization of radiation therapy to heterogeneous tumour populations and cancer stem cells	6
Modelling the interplay between the CD4$$^{+}$$/CD8$$^{+}$$ T-cell ratio and the expression of MHC-I in tumours	6
Stochastic control of ecological networks	6
Mathematical indices for the influence of risk factors on the lethality of a disease	6
Analysis of metapopulation models of the transmission of SARS-CoV-2 in the United States	6
Cardiac electro-mechanical activity in a deforming human cardiac tissue: modeling, existence–uniqueness, finite element computation and application to multiple ischemic disease	6
A mathematical model with aberrant growth correction in tissue homeostasis and tumor cell growth	6
Spread and persistence for integro-difference equations with shifting habitat and strong Allee effect	6
Persistence in a large network of sparsely interacting neurons	6
Site-bond percolation model of epidemic spreading with vaccination in complex networks	6
Long-term behavior of stochastic SIQRS epidemic models	6
Optimal vaccination ages for emerging infectious diseases under limited vaccine supply	6
Front propagation in the shadow wave-pinning model	6
Pace and motor control optimization for a runner	6
Pulled, pushed or failed: the demographic impact of a gene drive can change the nature of its spatial spread	6
Propagation dynamics for an age-structured population model in time-space periodic habitat	6
Aposematic signalling in prey-predator systems: determining evolutionary stability when prey populations consist of a single species	5
A chain binomial epidemic with asymptomatics motivated by COVID-19 modelling	5
Stochastic transmission in epidemiological models	5
Physiological insights into electrodiffusive maintenance of gastric mucus through sensitivity analysis and simulations	5
Long-range seed dispersal enables almost stationary patterns in a model for dryland vegetation	5
An aggregation model of cockroaches with fast-or-slow motion dichotomy	5
Hive geometry shapes the recruitment rate of honeybee colonies	5
Memory effects in disease modelling through kernel estimates with oscillatory time history	5
STDP-based associative memory formation and retrieval	5
Revisiting Shao and Sokal’s B2 index of phylogenetic balance	5
Data driven modeling of pseudopalisade pattern formation	5
Wave speed and critical patch size for integro-difference equations with a strong Allee effect	5
A West Nile virus nonlocal model with free boundaries and seasonal succession	5
Coevolutionary dynamics of host-pathogen interaction with density-dependent mortality	5
Phase field modeling and computation of vesicle growth or shrinkage	5
Inference in Gaussian state-space models with mixed effects for multiple epidemic dynamics	5
Structural identifiability analysis of age-structured PDE epidemic models	5
A binary search scheme for determining all contaminated specimens	5
Evolutionary stability is sensitive on the conflict between reproduction and survival: proofs	5
Impact of ontogenic changes on the dynamics of a fungal crop disease model motivated by coffee leaf rust	5
A perturbative approach to the analysis of many-compartment models characterized by the presence of waning immunity	5
Exchangeable coalescents beyond the Cannings class	5
Filtering coupled Wright–Fisher diffusions	5
Detecting minimum energy states and multi-stability in nonlocal advection–diffusion models for interacting species	5
Perceptive movement of susceptible individuals with memory	5
Staged HIV transmission and treatment in a dynamic model with long-term partnerships	5
Infection-induced increases to population size during cycles in a discrete-time epidemic model	5
Stochastic dynamics of an SIS epidemic on networks	5
The impact of vaccination on human papillomavirus infection with disassortative geographical mixing: a two-patch modeling study	5

Population dynamics under climate change: persistence criterion and effects of fluctuations	5
Foundations of static and dynamic absolute concentration robustness	5
Evaluation of age-structured vaccination strategies for curbing the disease spread	5
The hybrid number of a ploidy profile	5
An SIRS model with nonmonotone incidence and saturated treatment in a changing environment	5
The effect of dispersal on asymptotic total population size in discrete- and continuous-time two-patch models	5
Neuronal activity induces symmetry breaking in neurodegenerative disease spreading	5
Vectorial crystallization problems and collective behavior	5
Computation of random time-shift distributions for stochastic population models	4
Incentives, lockdown, and testing: from Thucydides’ analysis to the COVID-19 pandemic	4
On a model of evolution of subspecies	4
Cyclic attractors of nonexpanding q-ary networks	4
An epidemic model with short-lived mixing groups	4
Multi-objective control to schedule therapies for acute viral infections	4
Human mobility and disease prevalence	4
Enumeration of binary trees compatible with a perfect phylogeny	4
When can a population spreading across sink habitats persist?	4
Bye bye, linearity, bye: quantification of the mean for linear CRNs in a random environment	4
A mathematical model for axonal transport of large cargo vesicles	4
Population growth and competition models with decay and competition consistent delay	4
The effects of spatially-constrained treatment regions upon a model of wombat mange	4
Two-phase model of compressive stress induced on a surrounding hyperelastic medium by an expanding tumour	4
Mathematical analysis of topological and random m-order spread models	4
Integrodifference models for evolutionary processes in biological invasions	4
Incorporating carbon dioxide into a stoichiometric producer–grazer model	4
Extinction scenarios in evolutionary processes: a multinomial Wright–Fisher approach	4
Asymptotic behavior of the basic reproduction number for periodic nonlocal dispersal operators and applications	4
Exploring dynamics of plant–herbivore interactions: bifurcation analysis and chaos control with Holling type-II functional response	4
Resource allocation in a PDE ecosystem model	4
From individual-based epidemic models to McKendrick-von Foerster PDEs: a guide to modeling and inferring COVID-19 dynamics	4
A Model for Cell Proliferation in a Developing Organism	4
The impact of harvesting on the evolutionary dynamics of prey species in a prey-predator systems	4
Viral infection dynamics with immune chemokines and CTL mobility modulated by the infected cell density	4
A stochastic hierarchical model for low grade glioma evolution	4
Exact solutions and bounds for network SIR and SEIR models using a rooted-tree approximation	4
Feedback-delay dependence of the stability of cluster periodic orbits in populations of degrade-and-fire oscillators with common activator	4
Modified quasispecies model: the analysis of a periodic therapy	4
Spatial ecology, optimal control and game theoretical fishing problems	4
The persistence of bipartite ecological communities with Lotka–Volterra dynamics	4
Shear stress regulation in cylindrical arteries through medial growth and nitric oxide release	4
Demographic feedbacks can hamper the spatial spread of a gene drive	4
Stoichiometric theory in optimal foraging strategy	4
Equilibrium and surviving species in a large Lotka–Volterra system of differential equations	3
Spatial spread of infectious diseases with conditional vector preferences	3
Heteroclinic cycling and extinction in May–Leonard models with demographic stochasticity	3
Effects of whaling and krill fishing on the whale–krill predation dynamics: bifurcations in a harvested predator–prey model with Holling type I functional response	3
A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations	3
Modeling the voltage distribution in a non-locally but globally electroneutral confined electrolyte medium: applications for nanophysiology	3
Stability of a one-dimensional morphoelastic model for post-burn contraction	3
Evolution of pathogen tolerance and reproductive trade-off implications	3
Another view of sequential sampling in the birth process with immigration	3
Discrete coalescent trees	3
A Ca2+ puff model based on integrodifferential equations	3
A hybrid Lagrangian–Eulerian model for vector-borne diseases	3
An investigation of tuberculosis progression revealing the role of macrophages apoptosis via sensitivity and bifurcation analysis	3
Analysis of a diffusive epidemic system with spatial heterogeneity and lag effect of media impact	3
Assessing the impact of serostatus-dependent immunization on mitigating the spread of dengue virus	3
A mosquito population suppression model with a saturated Wolbachia release strategy in seasonal succession	3
Stoichiometry and environmental change drive dynamical complexity and unpredictable switches in an intraguild predation model	3
Noise dissipation in gene regulatory networks via second order statistics of networks of infinite server queues	3
Mixed uncertainty analysis on pumping by peristaltic hearts using Dempster–Shafer theory	3
Can insecticide resistance increase malaria transmission? A genetics-epidemiology mathematical modeling approach	3
Dispersal-induced growth in a time-periodic environment	3
A robust optimal control framework for controlling aberrant RTK signaling pathways in esophageal cancer	3
Growth bound and threshold dynamic for nonautonomous nondensely defined evolution problems	3
The coalescent tree of a Markov branching process with generalised logistic growth	3
Dynamical analysis of a stochastic maize streak virus epidemic model with logarithmic Ornstein–Uhlenbeck process	3
On the geometry of elementary flux modes	3
Sensitivity of the electrical response of a node of Ranvier model to alterations of the myelin sheath geometry	3
F-actin bending facilitates net actomyosin contraction By inhibiting expansion with plus-end-located myosin motors	3
Mutational meltdown in asexual populations doomed to extinction	3
Evaluating the long-term effects of combination antiretroviral therapy of HIV infection: a modeling study	3
Rich dynamics of a bidirectionally linked immuno-epidemiological model for cholera	3
Tumor containment: a more general mathematical analysis	3
A branching model for intergenerational telomere length dynamics	3
The robustness of phylogenetic diversity indices to extinctions	3
Plastic energy allocation toward life-history functions in a consumer-resource interaction	3
Geometry of fitness landscapes: peaks, shapes and universal positive epistasis	3
The existence and stability of spikes in the one-dimensional Keller–Segel model with logistic growth	3
When can we reconstruct the ancestral state? Beyond Brownian motion	3
Seed predation-induced Allee effects, seed dispersal and masting jointly drive the diversity of seed sources during population expansion	3
Noise-driven bifurcations in a neural field system modelling networks of grid cells	3
Learning spiking neuronal networks with artificial neural networks: neural oscillations	3
Dynamic modeling of bone remodeling, osteolytic metastasis and PK/PD therapy: introducing variable order derivatives as a simplification technique	3
TruEst: a better estimator of evolutionary distance under the INFER model	3
Strong biological correlations as a cause of autonomous oscillations in epidemics	3
Invasive behaviour under competition via a free boundary model: a numerical approach	3
A coupled algebraic-delay differential system modeling tick-host interactive behavioural dynamics and multi-stability	3
Spatial dynamics of a vegetation model with uptake–diffusion feedback in an arid environment	3
On inverse problems for several coupled PDE systems arising in mathematical biology	3
Stochastic enzyme kinetics and the quasi-steady-state reductions: Application of the slow scale linear noise approximation à la Fenichel	3
Algorithmic criteria for the validity of quasi-steady state and partial equilibrium models: the Michaelis–Menten reaction mechanism	3
On asymptotic joint distributions of cherries and pitchforks for random phylogenetic trees	3
Mathematical analysis on an age-structured SIS epidemic model with nonlocal diffusion	3
The intrarenal renin-angiotensin system in hypertension: insights from mathematical modelling	3