Journal of Mathematical Biology

Article	Citations
Distribution of extreme first passage times of diffusion	36
Spatial movement with distributed memory	33
Kinetic models for epidemic dynamics with social heterogeneity	32
A delay suppression model with sterile mosquitoes release period equal to wild larvae maturation period	29
Fixation probabilities in evolutionary dynamics under weak selection	28
Spatiotemporal patterns of a diffusive prey-predator model with spatial memory and pregnancy period in an intimidatory environment	27
Turing conditions for pattern forming systems on evolving manifolds	27
Control with uncertain data of socially structured compartmental epidemic models	26
Asymptotic profiles of the steady states for an SIS epidemic patch model with asymmetric connectivity matrix	24
A general theory of coexistence and extinction for stochastic ecological communities	23
Invasion analysis on a predator–prey system in open advective environments	23
Modeling and dynamics of Wolbachia-infected male releases and mating competition on mosquito control	22
Time-dependent solution of the NIMFA equations around the epidemic threshold	19
Optimal control of an SIR epidemic through finite-time non-pharmaceutical intervention	19
Analysis of an age-structured tuberculosis model with treatment and relapse	17
Continuous-time stochastic processes for the spread of COVID-19 disease simulated via a Monte Carlo approach and comparison with deterministic models	17
Vaccination and herd immunity thresholds in heterogeneous populations	16
Threshold dynamics of a nonlocal and delayed cholera model in a spatially heterogeneous environment	16
On the heterozygosity of an admixed population	15
Open problems in PDE models for knowledge-based animal movement via nonlocal perception and cognitive mapping	15
Classes of explicit phylogenetic networks and their biological and mathematical significance	15
Travelling wave solutions in a negative nonlinear diffusion–reaction model	15
Global dynamics of a generalist predator–prey model in open advective environments	15
Mathematical analysis on an age-structured SIS epidemic model with nonlocal diffusion	15
Dynamics of task allocation in social insect colonies: scaling effects of colony size versus work activities	15

Spots, stripes, and spiral waves in models for static and motile cells	14
A geometric analysis of the SIRS epidemiological model on a homogeneous network	14
Relatedness coefficients in pedigrees with inbred founders	14
Global analysis of a predator–prey model with variable predator search rate	13
Complete Characterization of Incorrect Orthology Assignments in Best Match Graphs	13
On the Lotka–Volterra competition system with dynamical resources and density-dependent diffusion	13
An SIS model for the epidemic dynamics with two phases of the human day-to-day activity	13
Maximizing the total population with logistic growth in a patchy environment	13
Impact of releasing period and magnitude on mosquito population in a sterile release model with delay	13
On the global attractivity for a reaction–diffusion malaria model with incubation period in the vector population	13
On the effects of carrying capacity and intrinsic growth rate on single and multiple species in spatially heterogeneous environments	13
Harvesting and seeding of stochastic populations: analysis and numerical approximation	12
Bifurcation analysis of the predator–prey model with the Allee effect in the predator	12
Information geometry for phylogenetic trees	12
A spatial model of honey bee colony collapse due to pesticide contamination of foraging bees	12
Counting phylogenetic networks of level 1 and 2	12
Analysis of a two-strain malaria transmission model with spatial heterogeneity and vector-bias	12
Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach	12
An integrodifference model for vegetation patterns in semi-arid environments with seasonality	12
Dynamics of SIR model with vaccination and heterogeneous behavioral response of individuals modeled by the Preisach operator	11
Dynamic metabolic resource allocation based on the maximum entropy principle	11
Herd immunity under individual variation and reinfection	11
Optimal open-loop desynchronization of neural oscillator populations	11
The structure of infinitesimal homeostasis in input–output networks	11
Modeling the role of macrophages in HIV persistence during antiretroviral therapy	10
Stationary distributions of persistent ecological systems	10
Computing nearest neighbour interchange distances between ranked phylogenetic trees	10
Geometric singular perturbation theory analysis of an epidemic model with spontaneous human behavioral change	10
Theoretical modeling of collaterally sensitive drug cycles: shaping heterogeneity to allow adaptive therapy	10
Multiscale modeling of glioma pseudopalisades: contributions from the tumor microenvironment	10
Structural identifiability analysis of age-structured PDE epidemic models	10
Permanence via invasion graphs: incorporating community assembly into modern coexistence theory	10
Demographic feedbacks can hamper the spatial spread of a gene drive	10
Canard-induced complex oscillations in an excitatory network	10
Long-lasting insecticidal nets and the quest for malaria eradication: a mathematical modeling approach	9
Resident-invader dynamics of similar strategies in fluctuating environments	9
Nonlocal and local models for taxis in cell migration: a rigorous limit procedure	9
Population abundance of two-patch competitive systems with asymmetric dispersal	9
Incentives, lockdown, and testing: from Thucydides’ analysis to the COVID-19 pandemic	9
An SIRS model with nonmonotone incidence and saturated treatment in a changing environment	9
A branching process model for dormancy and seed banks in randomly fluctuating environments	9
Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach	8
Unbounded solutions of models for glycolysis	8
A West Nile virus nonlocal model with free boundaries and seasonal succession	8
Analysis and optimal control of an HIV model based on CD4 count	8
A reaction-advection-diffusion model of cholera epidemics with seasonality and human behavior change	8
On the minimum value of the Colless index and the bifurcating trees that achieve it	8
On the optimal control of SIR model with Erlang-distributed infectious period: isolation strategies	8
A cell–cell repulsion model on a hyperbolic Keller–Segel equation	8
Identifiability of local and global features of phylogenetic networks from average distances	8

On the qualitative study of a two-trophic plant–herbivore model	8
Basic reproduction ratio of a mosquito-borne disease in heterogeneous environment	8
Long-time behavior of a PDE replicator equation for multilevel selection in group-structured populations	7
Fixation probabilities for the Moran process with three or more strategies: general and coupling results	7
On asymptotic joint distributions of cherries and pitchforks for random phylogenetic trees	7
An all-leader agent-based model for turning and flocking birds	7
A non-parametric method for determining epidemiological reproduction numbers	7
Early epidemic spread, percolation and Covid-19	7
Trinets encode orchard phylogenetic networks	7
A reaction–diffusion model of spatial propagation of A$$\beta $$ oligomers in early stage Alzheimer’s disease	7
Indirect identification of horizontal gene transfer	7
Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data	7
Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view	7
A modified Ising model of Barabási–Albert network with gene-type spins	7
Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes	7
Analysis of a diffusive epidemic system with spatial heterogeneity and lag effect of media impact	6
Caterpillars on three and four leaves are sufficient to reconstruct binary normal networks	6
The emergence of a virus variant: dynamics of a competition model with cross-immunity time-delay validated by wastewater surveillance data for COVID-19	6
Scheduling fixed length quarantines to minimize the total number of fatalities during an epidemic	6
A model of algal growth depending on nutrients and inorganic carbon in a poorly mixed water column	6
A delay model for persistent viral infections in replicating cells	6
Corrigendum to “Best match graphs”	6
Stability of a one-dimensional morphoelastic model for post-burn contraction	6
A two-thresholds policy for a Filippov model in combating influenza	6
Bistability in deterministic and stochastic SLIAR-type models with imperfect and waning vaccine protection	6
Interactions between different predator–prey states: a method for the derivation of the functional and numerical response	6
Identifiability of species network topologies from genomic sequences using the logDet distance	6
A multiphase model of growth factor-regulated atherosclerotic cap formation	6
Time dependent asymptotic analysis of the gene regulatory network of the AcrAB-TolC efflux pump system in gram-negative bacteria	6
Parameter estimation in fluorescence recovery after photobleaching: quantitative analysis of protein binding reactions and diffusion	6
Impact of population size and movement on the persistence of a two-strain infectious disease	6
A novel mathematical model of heterogeneous cell proliferation	6
Invasive behaviour under competition via a free boundary model: a numerical approach	6
Estimating the extent of glioblastoma invasion	6
The intrarenal renin-angiotensin system in hypertension: insights from mathematical modelling	6
Efficiency functionals for the Lévy flight foraging hypothesis	5
Operon dynamics with state dependent transcription and/or translation delays	5
Analysis of the onset of a regime shift and detecting early warning signs of major population changes in a two-trophic three-species predator-prey model with long-term transients	5
Propagation direction of traveling waves for a class of bistable epidemic models	5
The tree of blobs of a species network: identifiability under the coalescent	5
Implications of immune-mediated metastatic growth on metastatic dormancy, blow-up, early detection, and treatment	5
Heteroclinic cycling and extinction in May–Leonard models with demographic stochasticity	5
Dispersal-induced growth in a time-periodic environment	5
Limits of epidemic prediction using SIR models	5
Foundations of static and dynamic absolute concentration robustness	5
Stochastic dynamics of an SIS epidemic on networks	5
Lotka–Volterra approximations for evolutionary trait-substitution processes	5
Discrete coalescent trees	5
Dynamics of epidemic spreading on connected graphs	5
Stochastic models of infectious diseases in a periodic environment with application to cholera epidemics	5
An HIV stochastic model with cell-to-cell infection, B-cell immune response and distributed delay	5
Dynamics of a periodic tick-borne disease model with co-feeding and multiple patches	5
Influence of a road on a population in an ecological niche facing climate change	5
Population dynamics under climate change: persistence criterion and effects of fluctuations	5
On real-valued SDE and nonnegative-valued SDE population models with demographic variability	5
Coevolutionary dynamics of host-pathogen interaction with density-dependent mortality	5
Traveling waves in non-local pulse-coupled networks	5
Evolution of a structured cell population endowed with plasticity of traits under constraints on and between the traits	5
Temperature sensitivity of pest reproductive numbers in age-structured PDE models, with a focus on the invasive spotted lanternfly	5
Use of mathematical modelling to assess respiratory syncytial virus epidemiology and interventions: a literature review	5
Analytic solutions for stochastic hybrid models of gene regulatory networks	4
Quasi-neutral dynamics in a coinfection system with N strains and asymmetries along multiple traits	4
Epidemic modeling with heterogeneity and social diffusion	4
Target reproduction numbers for reaction-diffusion population models	4
An algebraic characterization of self-generating chemical reaction networks using semigroup models	4
Perceptive movement of susceptible individuals with memory	4
Mathematical models for the effect of anti-vascular endothelial growth factor on visual acuity	4
A systematic procedure for incorporating separable static heterogeneity into compartmental epidemic models	4
Low-rank tensor methods for Markov chains with applications to tumor progression models	4
Gain and loss of function mutations in biological chemical reaction networks: a mathematical model with application to colorectal cancer cells	4
Multivariate phase-type theory for the site frequency spectrum	4
The rigid hybrid number for two phylogenetic trees	4
Adaptation in a heterogeneous environment I: persistence versus extinction	4
Haldane’s formula in Cannings models: the case of moderately strong selection	4
Analysis of trophic networks: an optimisation approach	4
An SIR model with viral load-dependent transmission	4
Wave speed and critical patch size for integro-difference equations with a strong Allee effect	4
Detecting minimum energy states and multi-stability in nonlocal advection–diffusion models for interacting species	4
Semigroup models for biochemical reaction networks	4
Pace and motor control optimization for a runner	4

Reduction of a stochastic model of gene expression: Lagrangian dynamics gives access to basins of attraction as cell types and metastabilty	4
Stochastic control of ecological networks	4
Populations in environments with a soft carrying capacity are eventually extinct	4
Within-host bacterial growth dynamics with both mutation and horizontal gene transfer	4
A Fokker–Planck feedback control framework for optimal personalized therapies in colon cancer-induced angiogenesis	4
Incorporating carbon dioxide into a stoichiometric producer–grazer model	4
General conditions for Turing and wave instabilities in reaction -diffusion systems	4
A hierarchical intervention scheme based on epidemic severity in a community network	4
Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs	4
Physiological insights into electrodiffusive maintenance of gastric mucus through sensitivity analysis and simulations	4
Differential equation model for central-place foragers with memory: implications for bumble bee crop pollination	4
Equilibrium and surviving species in a large Lotka–Volterra system of differential equations	4
Mathematical indices for the influence of risk factors on the lethality of a disease	4
Theoretical growth rate of microalgae under high/low-flashing light	4
Long-time behavior and Darwinian optimality for an asymmetric size-structured branching process	4
Cooperativity, absolute interaction, and algebraic optimization	4
Reduced biomechanical models for precision-cut lung-slice stretching experiments	4
The impact of infection-derived immunity on disease dynamics	4
Optimal control of bioproduction in the presence of population heterogeneity	3
The dynamics of sexually transmitted diseases with men who have sex with men	3
Feasibility of sparse large Lotka-Volterra ecosystems	3
Viral dynamics with immune responses: effects of distributed delays and Filippov antiretroviral therapy	3
Scaling relations for auxin waves	3
Deterministic and stochastic modeling for PDGF-driven gliomas reveals a classification of gliomas	3
Pulled, pushed or failed: the demographic impact of a gene drive can change the nature of its spatial spread	3
Slowest first passage times, redundancy, and menopause timing	3
Implicit versus explicit vector management strategies in models for vector-borne disease epidemiology	3
Dynamics of a new HIV model with the activation status of infected cells	3
Aposematic signalling in prey-predator systems: determining evolutionary stability when prey populations consist of a single species	3
Discrete-time population dynamics of spatially distributed semelparous two-sex populations	3
Global dynamics of the chemostat with overflow metabolism	3
Population growth and competition models with decay and competition consistent delay	3
Can a barrier zone stop invasion of a population?	3
Quorum-sensing induced transitions between bistable steady-states for a cell-bulk ODE-PDE model with lux intracellular kinetics	3
Relative prevalence-based dispersal in an epidemic patch model	3
Population dynamics with resource-dependent dispersal: single- and two-species models	3
An epidemic model with short-lived mixing groups	3
Structural identifiability analysis of epidemic models based on differential equations: a tutorial-based primer	3
Life history traits and dispersal shape neutral genetic diversity in metapopulations	3
Comparative analysis of continuum angiogenesis models	3
Long-range seed dispersal enables almost stationary patterns in a model for dryland vegetation	3
Stoechiometric and dynamical autocatalysis for diluted chemical reaction networks	3
Assessment of event-triggered policies of nonpharmaceutical interventions based on epidemiological indicators	3
Imperfect and Bogdanov–Takens bifurcations in biological models: from harvesting of species to isolation of infectives	3
Optimal control by deep learning techniques and its applications on epidemic models	3
Modelling dendritic spines with the finite element method, investigating the impact of geometry on electric and calcic responses	3
On convergence for hybrid models of gene regulatory networks under polytopic uncertainties: a Lyapunov approach	3
Long time behavior and stable patterns in high-dimensional polarity models of asymmetric cell division	3
Spatial dynamics of a vegetation model with uptake–diffusion feedback in an arid environment	3
Hybrid models of chemotaxis with application to leukocyte migration	3
Rich dynamics of a bidirectionally linked immuno-epidemiological model for cholera	3
A Turing mechanism in order to explain the patchy nature of Crohn’s disease	3
Bifurcations driven by generalist and specialist predation: mathematical interpretation of Fennoscandia phenomenon	3
A game-theoretic model of rabies in domestic dogs with multiple voluntary preventive measures	3
Revisiting Shao and Sokal’s B2 index of phylogenetic balance	3
Optimal vaccine allocation for the control of sexually transmitted infections	3
Local asymptotic stability of a system of integro-differential equations describing clonal evolution of a self-renewing cell population under mutation	3
Mathematical model for the estrogen paradox in breast cancer treatment	3
Fluctuating-rate model with multiple gene states	3
Analytical detection of stationary and dynamic patterns in a prey–predator model with reproductive Allee effect in prey growth	3
The large-sample asymptotic behaviour of quartet-based summary methods for species tree inference	3
Evolutionary dynamics in an SI epidemic model with phenotype-structured susceptible compartment	3
A dual process for the coupled Wright–Fisher diffusion	3
Antigen receptor therapy in bone metastasis via optimal control for different human life stages	3
Tumor growth towards lower extracellular matrix conductivity regions under Darcy’s Law and steady morphology	2
Unifying incidence and prevalence under a time-varying general branching process	2
A simple in-host model for COVID-19 with treatments: model prediction and calibration	2
Correction to: General conditions for Turing and wave instabilities in reaction–diffusion systems	2
A continuation method for spatially discretized models with nonlocal interactions conserving size and shape of cells and lattices	2
Continuous and discrete modeling of HIV-1 decline on therapy	2
A Markovian arrival stream approach to stochastic gene expression in cells	2
A systematic search for switch-like behavior in type II toxin–antitoxin systems	2
An alternative delayed population growth difference equation model	2
Exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing $$\textbf{G}$$ matrices	2
A computational framework for evaluating the role of mobility on the propagation of epidemics on point processes	2
Dynamics of ERK regulation in the processive limit	2
An investigation of tuberculosis progression revealing the role of macrophages apoptosis via sensitivity and bifurcation analysis	2
A chain binomial epidemic with asymptomatics motivated by COVID-19 modelling	2
SIRC epidemic model with cross-immunity and multiple time delays	2
COVID-19-associated pulmonary aspergillosis in immunocompetent patients: a virtual patient cohort study	2
A mean first passage time genome rearrangement distance	2
Spatiotemporal dynamics induced by intraguild predator diffusion in an intraguild predation model	2
Bifurcation analysis of a free boundary model of vascular tumor growth with a necrotic core and chemotaxis	2
A mathematical representation of the reactive scope model	2
Accessibility percolation on Cartesian power graphs	2
A new algebraic approach to genome rearrangement models	2
Operating diagrams for a three-tiered microbial food web in the chemostat	2
‘Holey’ niche! finding holes in niche hypervolumes using persistence homology	2
Analysis of a mathematical model of immune response to fungal infection	2
Pedigree in the biparental Moran model	2
Cost optimisation of hybrid institutional incentives for promoting cooperation in finite populations	2
Quasi-steady-state reduction of a model for cytoplasmic transport of secretory vesicles in stimulated chromaffin cells	2
The importance of quarantine: modelling the COVID-19 testing process	2
Adjusting the range of cell–cell communication enables fine-tuning of cell fate patterns from checkerboard to engulfing	2
Novel spatial profiles of some diffusive SIS epidemic models	2