Journal of Mathematical Biology

Article	Citations
Kinetic models for epidemic dynamics with social heterogeneity	42
Fixation probabilities in evolutionary dynamics under weak selection	39
Spatiotemporal patterns of a diffusive prey-predator model with spatial memory and pregnancy period in an intimidatory environment	36
Spatial movement with distributed memory	34
Control with uncertain data of socially structured compartmental epidemic models	32
A delay suppression model with sterile mosquitoes release period equal to wild larvae maturation period	30
Turing conditions for pattern forming systems on evolving manifolds	29
A general theory of coexistence and extinction for stochastic ecological communities	26
Classes of explicit phylogenetic networks and their biological and mathematical significance	22
Optimal control of an SIR epidemic through finite-time non-pharmaceutical intervention	21
Bifurcation analysis of the predator–prey model with the Allee effect in the predator	21
Global dynamics of a generalist predator–prey model in open advective environments	20
Theoretical modeling of collaterally sensitive drug cycles: shaping heterogeneity to allow adaptive therapy	20
Analysis of an age-structured tuberculosis model with treatment and relapse	19
Open problems in PDE models for knowledge-based animal movement via nonlocal perception and cognitive mapping	19
Dynamics of task allocation in social insect colonies: scaling effects of colony size versus work activities	18
Vaccination and herd immunity thresholds in heterogeneous populations	18
Continuous-time stochastic processes for the spread of COVID-19 disease simulated via a Monte Carlo approach and comparison with deterministic models	18
A geometric analysis of the SIRS epidemiological model on a homogeneous network	18
Mathematical analysis on an age-structured SIS epidemic model with nonlocal diffusion	17
Threshold dynamics of a nonlocal and delayed cholera model in a spatially heterogeneous environment	17
Structural identifiability analysis of age-structured PDE epidemic models	17
Herd immunity under individual variation and reinfection	17
Information geometry for phylogenetic trees	16
Dynamics of SIR model with vaccination and heterogeneous behavioral response of individuals modeled by the Preisach operator	16

On the Lotka–Volterra competition system with dynamical resources and density-dependent diffusion	16
Spots, stripes, and spiral waves in models for static and motile cells	15
Complete Characterization of Incorrect Orthology Assignments in Best Match Graphs	15
Travelling wave solutions in a negative nonlinear diffusion–reaction model	15
On the global attractivity for a reaction–diffusion malaria model with incubation period in the vector population	14
Analysis of a two-strain malaria transmission model with spatial heterogeneity and vector-bias	14
The structure of infinitesimal homeostasis in input–output networks	14
Demographic feedbacks can hamper the spatial spread of a gene drive	13
An SIRS model with nonmonotone incidence and saturated treatment in a changing environment	13
Impact of releasing period and magnitude on mosquito population in a sterile release model with delay	13
Computing nearest neighbour interchange distances between ranked phylogenetic trees	12
Permanence via invasion graphs: incorporating community assembly into modern coexistence theory	12
Geometric singular perturbation theory analysis of an epidemic model with spontaneous human behavioral change	12
Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data	12
Maximizing the total population with logistic growth in a patchy environment	12
An all-leader agent-based model for turning and flocking birds	11
A model of algal growth depending on nutrients and inorganic carbon in a poorly mixed water column	11
Incentives, lockdown, and testing: from Thucydides’ analysis to the COVID-19 pandemic	11
A West Nile virus nonlocal model with free boundaries and seasonal succession	11
Stationary distributions of persistent ecological systems	11
Multiscale modeling of glioma pseudopalisades: contributions from the tumor microenvironment	11
A branching process model for dormancy and seed banks in randomly fluctuating environments	11
A hierarchical intervention scheme based on epidemic severity in a community network	10
Identifiability of local and global features of phylogenetic networks from average distances	10
On the qualitative study of a two-trophic plant–herbivore model	10
A reaction-advection-diffusion model of cholera epidemics with seasonality and human behavior change	10
Indirect identification of horizontal gene transfer	9
Identifiability of species network topologies from genomic sequences using the logDet distance	9
On asymptotic joint distributions of cherries and pitchforks for random phylogenetic trees	9
Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes	9
Long-time behavior of a PDE replicator equation for multilevel selection in group-structured populations	9
Unbounded solutions of models for glycolysis	9
Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view	9
Dynamics of a periodic tick-borne disease model with co-feeding and multiple patches	8
Corrigendum to “Best match graphs”	8
Trinets encode orchard phylogenetic networks	8
Limits of epidemic prediction using SIR models	8
On the optimal control of SIR model with Erlang-distributed infectious period: isolation strategies	8
The emergence of a virus variant: dynamics of a competition model with cross-immunity time-delay validated by wastewater surveillance data for COVID-19	8
The tree of blobs of a species network: identifiability under the coalescent	8
Basic reproduction ratio of a mosquito-borne disease in heterogeneous environment	8
Analysis of a diffusive epidemic system with spatial heterogeneity and lag effect of media impact	7
Stoichiometry and environmental change drive dynamical complexity and unpredictable switches in an intraguild predation model	7
Impact of population size and movement on the persistence of a two-strain infectious disease	7
Efficiency functionals for the Lévy flight foraging hypothesis	7
Population dynamics under climate change: persistence criterion and effects of fluctuations	7
Estimating the extent of glioblastoma invasion	7
Time dependent asymptotic analysis of the gene regulatory network of the AcrAB-TolC efflux pump system in gram-negative bacteria	7
Use of mathematical modelling to assess respiratory syncytial virus epidemiology and interventions: a literature review	7
Incorporating carbon dioxide into a stoichiometric producer–grazer model	7

Bistability in deterministic and stochastic SLIAR-type models with imperfect and waning vaccine protection	7
Stoechiometric and dynamical autocatalysis for diluted chemical reaction networks	7
Discrete coalescent trees	7
A reaction–diffusion model of spatial propagation of A$$\beta $$ oligomers in early stage Alzheimer’s disease	7
Temperature sensitivity of pest reproductive numbers in age-structured PDE models, with a focus on the invasive spotted lanternfly	7
General conditions for Turing and wave instabilities in reaction -diffusion systems	7
The impact of infection-derived immunity on disease dynamics	7
Epidemic modeling with heterogeneity and social diffusion	7
A non-parametric method for determining epidemiological reproduction numbers	7
A systematic procedure for incorporating separable static heterogeneity into compartmental epidemic models	7
An SIR model with viral load-dependent transmission	6
Quasi-neutral dynamics in a coinfection system with N strains and asymmetries along multiple traits	6
Stochastic dynamics of an SIS epidemic on networks	6
The intrarenal renin-angiotensin system in hypertension: insights from mathematical modelling	6
Parameter estimation in fluorescence recovery after photobleaching: quantitative analysis of protein binding reactions and diffusion	6
Stochastic models of infectious diseases in a periodic environment with application to cholera epidemics	6
The dynamics of sexually transmitted diseases with men who have sex with men	6
An HIV stochastic model with cell-to-cell infection, B-cell immune response and distributed delay	6
A Fokker–Planck feedback control framework for optimal personalized therapies in colon cancer-induced angiogenesis	6
A novel mathematical model of heterogeneous cell proliferation	6
Analysis of the onset of a regime shift and detecting early warning signs of major population changes in a two-trophic three-species predator-prey model with long-term transients	6
Invasive behaviour under competition via a free boundary model: a numerical approach	6
Coevolutionary dynamics of host-pathogen interaction with density-dependent mortality	6
A Markovian arrival stream approach to stochastic gene expression in cells	6
Stability of a one-dimensional morphoelastic model for post-burn contraction	6
Dispersal-induced growth in a time-periodic environment	6
Heteroclinic cycling and extinction in May–Leonard models with demographic stochasticity	6
Haldane’s formula in Cannings models: the case of moderately strong selection	6
Long-range seed dispersal enables almost stationary patterns in a model for dryland vegetation	6
Slowest first passage times, redundancy, and menopause timing	6
Scheduling fixed length quarantines to minimize the total number of fatalities during an epidemic	6
A delay model for persistent viral infections in replicating cells	6
Imperfect and Bogdanov–Takens bifurcations in biological models: from harvesting of species to isolation of infectives	6
Pulled, pushed or failed: the demographic impact of a gene drive can change the nature of its spatial spread	6
Low-rank tensor methods for Markov chains with applications to tumor progression models	6
Evolution of a structured cell population endowed with plasticity of traits under constraints on and between the traits	6
Analytic solutions for stochastic hybrid models of gene regulatory networks	6
Structural identifiability analysis of epidemic models based on differential equations: a tutorial-based primer	6
Operon dynamics with state dependent transcription and/or translation delays	5
Revisiting Shao and Sokal’s B2 index of phylogenetic balance	5
Operating diagrams for a three-tiered microbial food web in the chemostat	5
Perceptive movement of susceptible individuals with memory	5
A simple in-host model for COVID-19 with treatments: model prediction and calibration	5
Gain and loss of function mutations in biological chemical reaction networks: a mathematical model with application to colorectal cancer cells	5
Equilibrium and surviving species in a large Lotka–Volterra system of differential equations	5
A mathematical model for simulating the spread of a disease through a country divided into geographical regions with different population densities	5
Reduced biomechanical models for precision-cut lung-slice stretching experiments	5
Inference on autoregulation in gene expression with variance-to-mean ratio	5
A game-theoretic model of rabies in domestic dogs with multiple voluntary preventive measures	5
Physiological insights into electrodiffusive maintenance of gastric mucus through sensitivity analysis and simulations	5
An algebraic characterization of self-generating chemical reaction networks using semigroup models	5
Pace and motor control optimization for a runner	5
SIRC epidemic model with cross-immunity and multiple time delays	5
Optimal vaccine allocation for the control of sexually transmitted infections	5
Theoretical growth rate of microalgae under high/low-flashing light	5
Population dynamics with resource-dependent dispersal: single- and two-species models	5
Within-host bacterial growth dynamics with both mutation and horizontal gene transfer	5
Foundations of static and dynamic absolute concentration robustness	5
Classification of infinitesimal homeostasis in four-node input–output networks	5
Wave speed and critical patch size for integro-difference equations with a strong Allee effect	5
On inverse problems for several coupled PDE systems arising in mathematical biology	5
Differential equation model for central-place foragers with memory: implications for bumble bee crop pollination	5
Stochastic control of ecological networks	5
Traveling waves in non-local pulse-coupled networks	5
Dynamics of epidemic spreading on connected graphs	5
Exploring dynamics of plant–herbivore interactions: bifurcation analysis and chaos control with Holling type-II functional response	5
Global stability and parameter analysis reinforce therapeutic targets of PD-L1-PD-1 and MDSCs for glioblastoma	5
A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations	4
Dynamics of a new HIV model with the activation status of infected cells	4
Novel spatial profiles of some diffusive SIS epidemic models	4
An investigation of tuberculosis progression revealing the role of macrophages apoptosis via sensitivity and bifurcation analysis	4
Optimal control by deep learning techniques and its applications on epidemic models	4
Cost optimisation of hybrid institutional incentives for promoting cooperation in finite populations	4
Modeling tumour heterogeneity of PD-L1 expression in tumour progression and adaptive therapy	4
Optimal control of bioproduction in the presence of population heterogeneity	4
Evolutionary dynamics in an SI epidemic model with phenotype-structured susceptible compartment	4
Feasibility of sparse large Lotka-Volterra ecosystems	4
Viral dynamics with immune responses: effects of distributed delays and Filippov antiretroviral therapy	4
Life history traits and dispersal shape neutral genetic diversity in metapopulations	4
Population growth and competition models with decay and competition consistent delay	4

Exact expressions and numerical evaluation of average evolvability measures for characterizing and comparing $$\textbf{G}$$ matrices	4
Implicit versus explicit vector management strategies in models for vector-borne disease epidemiology	4
The model-specific Markov embedding problem for symmetric group-based models	4
Detecting minimum energy states and multi-stability in nonlocal advection–diffusion models for interacting species	4
Rich dynamics of a bidirectionally linked immuno-epidemiological model for cholera	4
Pedigree in the biparental Moran model	4
Reduction of a stochastic model of gene expression: Lagrangian dynamics gives access to basins of attraction as cell types and metastabilty	4
Relative prevalence-based dispersal in an epidemic patch model	4
A Turing mechanism in order to explain the patchy nature of Crohn’s disease	4
Multivariate phase-type theory for the site frequency spectrum	4
Bifurcations driven by generalist and specialist predation: mathematical interpretation of Fennoscandia phenomenon	4
Long time behavior and stable patterns in high-dimensional polarity models of asymmetric cell division	4
Analysis of trophic networks: an optimisation approach	4
Effects of dispersal rates in a two-stage reaction-diffusion system	4
Spectral analysis of transient amplifiers for death–birth updating constructed from regular graphs	4
Mathematical model for the estrogen paradox in breast cancer treatment	4
A dual process for the coupled Wright–Fisher diffusion	4
The role of A$$\beta $$ and Tau proteins in Alzheimer’s disease: a mathematical model on graphs	4
Mathematical indices for the influence of risk factors on the lethality of a disease	4
Spatiotemporal dynamics induced by intraguild predator diffusion in an intraguild predation model	4
Semigroup models for biochemical reaction networks	4
Spatial dynamics of a vegetation model with uptake–diffusion feedback in an arid environment	4
Niche differentiation in the light spectrum promotes coexistence of phytoplankton species: a spatial modelling approach	4
Adaptation in a heterogeneous environment I: persistence versus extinction	4
Towards a replicator dynamics model of age structured populations	4
Human mobility and disease prevalence	3
Global stability of latency-age/stage-structured epidemic models with differential infectivity	3
A mathematical model of p62-ubiquitin aggregates in autophagy	3
A homeostasis criterion for limit cycle systems based on infinitesimal shape response curves	3
Accessibility percolation on Cartesian power graphs	3
Strong stochastic persistence of some Lévy-driven Lotka–Volterra systems	3
Necessary and sufficient conditions for exact closures of epidemic equations on configuration model networks	3
On time-discretized versions of the stochastic SIS epidemic model: a comparative analysis	3
Staged HIV transmission and treatment in a dynamic model with long-term partnerships	3
Quorum-sensing induced transitions between bistable steady-states for a cell-bulk ODE-PDE model with lux intracellular kinetics	3
Analysis of a mathematical model of immune response to fungal infection	3
From individual-based epidemic models to McKendrick-von Foerster PDEs: a guide to modeling and inferring COVID-19 dynamics	3
Aposematic signalling in prey-predator systems: determining evolutionary stability when prey populations consist of a single species	3
Quasi-steady-state reduction of a model for cytoplasmic transport of secretory vesicles in stimulated chromaffin cells	3
A theory of mechanical stress-induced H2O2 signaling waveforms in Planta	3
Long-time behavior and Darwinian optimality for an asymmetric size-structured branching process	3
An epidemic model with short-lived mixing groups	3
A stochastic dynamical model for nosocomial infections with co-circulation of sensitive and resistant bacterial strains	3
Deterministic and stochastic modeling for PDGF-driven gliomas reveals a classification of gliomas	3
Scaling relations for auxin waves	3
An alternative delayed population growth difference equation model	3
Anomalous networks under the multispecies coalescent: theory and prevalence	3
Evolutionary dynamics of complex traits in sexual populations in a heterogeneous environment: how normal?	3
Geometry of fitness landscapes: peaks, shapes and universal positive epistasis	3
Assessment of event-triggered policies of nonpharmaceutical interventions based on epidemiological indicators	3
Antigen receptor therapy in bone metastasis via optimal control for different human life stages	3
Analysis of metapopulation models of the transmission of SARS-CoV-2 in the United States	3
Cannibalistic enemy–pest model: effect of additional food and harvesting	3
Global dynamics of the chemostat with overflow metabolism	3
Analytical detection of stationary and dynamic patterns in a prey–predator model with reproductive Allee effect in prey growth	3
The rigid hybrid number for two phylogenetic trees	3
The importance of quarantine: modelling the COVID-19 testing process	3
Relating Eulerian and Lagrangian spatial models for vector-host disease dynamics through a fundamental matrix	3
On the modelling of spatially heterogeneous nonlocal diffusion: deciding factors and preferential position of individuals	3
Local asymptotic stability of a system of integro-differential equations describing clonal evolution of a self-renewing cell population under mutation	3
Evolution of dietary diversity and a starvation driven cross-diffusion system as its singular limit	3
Precipitation governing vegetation patterns in an arid or semi-arid environment	3
Unifying incidence and prevalence under a time-varying general branching process	3
Vertex results for the robust analysis of uncertain biochemical systems	3
Determination of significant immunological timescales from mRNA-LNP-based vaccines in humans	3
Discrete-time population dynamics of spatially distributed semelparous two-sex populations	3
Stochastic transmission in epidemiological models	3
Hybrid models of chemotaxis with application to leukocyte migration	3
The large-sample asymptotic behaviour of quartet-based summary methods for species tree inference	3
Prevention and control of Ebola virus transmission: mathematical modelling and data fitting	3
On convergence for hybrid models of gene regulatory networks under polytopic uncertainties: a Lyapunov approach	3
COVID-19-associated pulmonary aspergillosis in immunocompetent patients: a virtual patient cohort study	3
Bye bye, linearity, bye: quantification of the mean for linear CRNs in a random environment	3
Comparative analysis of continuum angiogenesis models	3
Ancestral state reconstruction with large numbers of sequences and edge-length estimation	3
‘Holey’ niche! finding holes in niche hypervolumes using persistence homology	2
The expected loss of feature diversity (versus phylogenetic diversity) following rapid extinction at the present	2
Fast and precise inference on diffusivity in interacting particle systems	2
A systematic search for switch-like behavior in type II toxin–antitoxin systems	2
A time independent least squares algorithm for parameter identification of Turing patterns in reaction–diffusion systems	2
A robust optimal control framework for controlling aberrant RTK signaling pathways in esophageal cancer	2
The existence and stability of spikes in the one-dimensional Keller–Segel model with logistic growth	2
Vector-borne disease models with Lagrangian approach	2
Perturbation theory for evolution of cooperation on networks	2
How influenza vaccination and virus interference may impact combined influenza-coronavirus disease burden	2
Stochastic enzyme kinetics and the quasi-steady-state reductions: Application of the slow scale linear noise approximation à la Fenichel	2
Competitive dual-strain SIS epidemiological models with awareness programs in heterogeneous networks: two modeling approaches	2
A chain binomial epidemic with asymptomatics motivated by COVID-19 modelling	2
Spatial spread of infectious diseases with conditional vector preferences	2
Exploring how ecological and epidemiological processes shape multi-host disease dynamics using global sensitivity analysis	2
Inferring density-dependent population dynamics mechanisms through rate disambiguation for logistic birth-death processes	2
Asymptotic behavior of an epidemic model with infinitely many variants	2
Individual based models exhibiting Lévy-flight type movement induced by intracellular noise	2
Implications for infectious disease models of heterogeneous mixing on control thresholds	2
Noise dissipation in gene regulatory networks via second order statistics of networks of infinite server queues	2