OOIR: Observatory of International Research

Papers

(The TQCC of Biophysical Chemistry is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-02-01 to 2025-02-01.)

Article	Citations
Fluorescence microscopic imaging of single desmin intermediate filaments elongated by the presence of divalent cations in vitro	112
Molecular docking and machine learning affinity prediction of compounds identified upon softwood bark extraction to the main protease of the SARS-CoV-2 virus	61
Modulation of global stability, ligand binding and catalytic properties of trypsin by anions	60
Tunnel connects lipid bilayer to occluded odorant-binding site of insect olfactory receptor	53
Influence of amphotericin B on the DPPC/DOPC/sterols mixed monolayer in the presence of calcium ions	52
Molecular recognition and interaction between human plasminogen Kringle 5 and voltage-dependent anion channel-1 by biological specificity technologies and molecular dynamic simulation	48
Theoretical investigation of the electronic absorption spectra of the glucosides	42
Free energy landscape of wrapping of lipid nanocluster by polysaccharides	41
Interfacial properties of α-synuclein's Parkinsonian variants	40
Using surfactants as matrix for the matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF-MS) of amino acids: Sodium dodecyl sulfate (SDS) and sodium octyl sulfate (S	35
Editorial Board	34
Characterisation of the structural, dynamic and aggregation properties of the W64R amyloidogenic variant of human lysozyme	31
Enhancement of the thermal stability of G-quadruplex structures by urea	31
Unveiling the mechanisms underlying photothermal efficiency of gold shell-isolated nanoparticles (AuSHINs) on ductal mammary carcinoma cells (BT-474)	30
Effects of curcumin in the interaction with cardiolipin-containg lipid monolayers and bilayers	30
Editorial Board	29
Isolation of Amyloid-like Protein Aggregates (APA) from white bread and their characterisation	27
Dimethyl sulfoxide (DMSO) is a stabilizing co-solvent for G-quadruplex DNA	25
Editorial Board	23
Biotransformation of phenytoin in the electrochemically-driven CYP2C19 system	22
Protein–lipid acyl chain interactions: Depth-dependent changes of segmental mobility of phospholipid in contact with bacteriorhodopsin	22
Editorial Board	22
Probing pharmaceutically important amino acids L-isoleucine and L-tyrosine Solubilities: Unraveling the solvation thermodynamics in diverse mixed solvent systems	22
The composition of fusogenic lipid mixtures at the air-water modulates the physicochemical properties changes upon interaction with lysicamine	21
Intrinsic disorder and structural biology: Searching where the light isn't	21

Differential effects of DTT on HEWL amyloid fibrillation and fibril morphology at different pH	20
Editorial Board	20
Exploring solubility and energetics: Dissolution of biologically important l-threonine in diverse aqueous organic mixtures across the temperature range of 288.15 K to 308.15 K	18
The food and pharmaceutical additive benzoic acid induces amyloid fibrillation of an intrinsically disordered protein	18
Editorial Board	17
Editorial Board	16
The processing intermediate of human amylin, pro-amylin(1–48), has in vivo and in vitro bioactivity	16
Editorial Board	16
Amyloids, amorphous aggregates and assemblies of peptides – Assessing aggregation	15
β-Turn exchanges in the α-synuclein segment 44-TKEG-47 reveal high sequence fidelity requirements of amyloid fibril elongation	15
Elastic compliance and adsorption profiles of Bovine serum albumin at fluid/solid interface in the presence of electrolytes	15
Comparative study of the interaction of ivermectin with proteins of interest associated with SARS-CoV-2: A computational and biophysical approach	15
Enhancing amyloid beta inhibition and disintegration by natural compounds: A study utilizing spectroscopy, microscopy and cell biology	14
Influence of the gallate moiety on the interactions between green tea polyphenols and lipid membranes elucidated by molecular dynamics simulations	13
Structure and energetics guide dynamic behaviour in a T = 3 icosahedral virus capsid	13
Conformational stability of the deamidated and mutated human βB2-crystallin	13
Targeting phenylalanine assemblies as a prospective disease-modifying therapy for phenylketonuria	13
Studies on stabilization of collagen using Cr-doped polydopamine complex	13
Phytochemical profile, antioxidant, α-amylase inhibition, binding interaction and docking studies of Justicia carnea bioactive compounds with α-amylase	13
Luteoloside inhibits Aβ1–42 fibrillogenesis, disintegrates preformed fibrils, and alleviates amyloid-induced cytotoxicity	13
Nanoscale intracellular ultrastructures affected by osmotic pressure using small-angle X-ray scattering	13
Charge within Nt17 peptides modulates huntingtin aggregation and initial lipid binding events	13
Importance of interface and surface areas in protein-protein binding affinity prediction: A machine learning analysis based on linear regression and artificial neural network	12
Dissecting the effect of ALS mutation S375G on the conformational properties and aggregation dynamics of TDP-43370-375 fragment	12
Computational modelling of potent β-secretase (BACE1) inhibitors towards Alzheimer's disease treatment	12
Size and/or charge asymmetry effects in coulombic fluids in the presence of external fields: From simple electrolytes to molten salts	12
Membrane shape as determinant of protein properties	12
Myristoylation and its effects on the human Golgi Reassembly and Stacking Protein 55	12
Amyloid-like aggregation of bovine serum albumin at physiological temperature induced by cross-seeding effect of HEWL amyloid aggregates	11
Molecular conversion of MIG6 hotspot-3 peptide from the nonbinder to a moderate binder of HER2 by rational design of an orthogonal interaction system at the HER2–peptide interface	11
Bioinformatics analysis and biochemical characterisation of ABC transporter-associated periplasmic substrate-binding proteins ModA and MetQ from Helicobacter pylori strain SS1	11
In silico investigation on the mutational analysis of BRCA1-BARD1 RING domains and its effect on nucleosome recognition and ubiquitination	11
The contrasting roles of co-solvents in protein formulations and food products	11
Molecular dynamics simulations reveal the destabilization mechanism of Alzheimer's disease-related tau R3-R4 Protofilament by norepinephrine	10
How to best estimate the viscosity of lipid bilayers	10
CTK7A, a curcumin derivative, can be a potential candidate for targeting HIF-1α/p300 complex: Evidences from in vitro and computational studies	10
Equations describing semi-confluent cell growth (I) Analytical approximations	10
Histone H3 and H4 tails play an important role in nucleosome phase separation	10
Coupling of conformation and CPD damage in nucleosomal DNA	10
HIV-1 genomic RNA U3 region forms a stable quadruplex-hairpin structure	10
Thermodynamics of oligomerization and Helix-to-sheet structural transition of amyloid β-protein on anionic phospholipid vesicles	10
Engineered Sphingomonas sp. KT-1 PahZ1 monomers efficiently degrade poly(aspartic acid)	10
Interaction of gentamicin and gentamicin-AOT with poly-(lactide-co-glycolate) in a drug delivery system - density functional theory calculations and molecular dynamics simulation	9
Effect of cycloastragenol and punicalagin on Prp(106–126) and Aβ(25–35) oligomerization and fibrillizaton	9
Disordered regions tune order in chromatin organization and function	9
Membrane-water partitioning – Tackling the challenges of poorly soluble drugs using chaotropic co-solvents	9
The role of hydrophobic patches of de novo designed MSI-78 and VG16KRKP antimicrobial peptides on fragmenting model bilayer membranes	9
Biophysical processes underlying cross-seeding in amyloid aggregation and implications in amyloid pathology	9
Interactions of intrinsically disordered proteins with the unconventional chaperone human serum albumin: From mechanisms of amyloid inhibition to therapeutic opportunities	9
Modulation of membrane physical properties by natural insecticidal ketones	9

Herpes simplex virus encoded ICP6 protein forms functional amyloid assemblies with necroptosis-associated host proteins	9
NTPs compete in the active site of RNA polymerases I and II	9
Characterization of retinal chromophore and protonated Schiff base in Thermoplasmatales archaeon heliorhodopsin using solid-state NMR spectroscopy	9
High-resolution heteronuclear correlations between spin-1/2 and half-integer quadrupolar nuclei under fast MAS solid-state NMR	9
Critical assessment of popular biomolecular force fields for molecular dynamics simulations of folding and enzymatic activity of main protease of coronavirus SARS-CoV-2	9
Thermodynamics of amyloid fibril formation from non-equilibrium experiments of growth and dissociation	8
Kinetics of i-motif folding within the duplex context	8
Bridging in silico and in vitro perspectives to unravel molecular mechanisms underlying the inhibition of β-glucuronidase by coumarins from Hibiscus trionum	8
Exploring the solubility and intermolecular interactions of biologically significant amino acids l-serine and L-cysteine in binary mixtures of H2O + DMF, H2O + DMSO and H2O + ACN in temperature range	8
Dependence of cell's membrane potential on extracellular voltage observed in Chara globularis	8
ROC-guided virtual screening, molecular dynamics simulation, and bioactivity validation assessment Z195914464 as a 3CL Mpro inhibitor	8
An interpretable machine learning method for homo-trimeric protein interface residue-residue interaction prediction	8
Solubilisation & purification of membrane proteins using benzylamine-modified SMA polymers	8
Probing the energy landscape of the lipid interactions of the serotonin1A receptor	8
Advancements and future directions in research of the roles of insulin in amyloid diseases	8
Potential allosteric sites captured in glycolytic enzymes via residue-based network models: Phosphofructokinase, glyceraldehyde-3-phosphate dehydrogenase and pyruvate kinase	7
Authentic hSAA related with AA amyloidosis: New method of purification, folding and amyloid polymorphism	7
Editorial Board	7
Conformational analysis of membrane-proximal segments of GDAP1 in a lipidic environment using synchrotron radiation suggests a mode of assembly at the mitochondrial outer membrane	7
Quantum mechanics in ion channel	7
Interaction of the tau fibrils with the neuronal membrane	7
Phase behaviour and adsorption of deoxyribonucleic acid onto an azobenzene liquid crystalline ligand at the interfaces	7
Nitric oxide modulates NMDA receptor through a negative feedback mechanism and regulates the dynamical behavior of neuronal postsynaptic components	7
How to evict HP1 from H3: Using a complex salt bridge	7
Advanced applications of Nanodiscs-based platforms for antibodies discovery	7
Tailoring of hydroxyapatite nanoparticle surfaces of varying morphologies to facilitate counterion diffusion and subsequent protein denaturation	7
Inhibition mechanism of human insulin fibrillation by Bodipy carbon polymer dots and photothermal defibrillation effect of Bodipy carbon polymer dots modified by ThT	7
Probing the interactions between amyloidogenic proteins and bio-membranes	7
Secondary structure of peptides mimicking the Gly-rich regions of major ampullate spidroin protein 1 and 2	6
Editorial Board	6
Metal-binding and folding thermodynamics of Escherichia coli ribonuclease HI related to its catalytic function	6
Selective IR super-resolution imaging of β-keratins at the bulk or interface in feather detected by using a nonlinear optical process	6
Protein vibrations and their localization behaviour. A numerical scaling analysis	6
Synthesis and in vitro quantification of amyloid fibrils by barbituric and thiobarbituric acid-based chromene derivatives	6
Quantification of protein-protein interactions and activation dynamics: A new path to predictive biomarkers	6
Spectroscopy studies of interaction hypericin with an anti-cancer therapy drug doxorubicin	6
Targeting hydrophobicity in biofilm-associated protein (Bap) as a novel antibiofilm strategy against Staphylococcus aureus biofilm	6
Editorial Board	6
Dissimilar action of tamoxifen and 4-hydroxytamoxifen on phosphatidylcholine model membranes	6
Editorial Board	6
Ganglioside GM3 stimulates lipid-protein co-assembly in α-synuclein amyloid formation	6
Editorial Board	6
PolyQ aggregation studied by model peptides with intrinsic tryptophan fluorophores	6
The role of the lipid environment in the activity of G protein coupled receptors	6
Evidence of the different effect of mercury and cadmium on the hIAPP aggregation process	6
Interaction of esomeprazole with insulin detemir and human albumin: A potential cause of hypoglycemia	6
Coupling mechanisms in ATP synthesis: Rejoinder to “Response to molecular-level understanding of biological energy coupling and transduction”	6
TPE conjugated islet amyloid polypeptide probe for detection of peptide oligomers	6
Studies on the binding of wedelolactone to human serum albumin with multi-spectroscopic analysis, molecular docking and molecular dynamic simulation	6
Editorial Board	6
Free energy simulations to understand the effect of Met → Ala mutations at positions 205, 206 and 213 on stability of human prion protein	6
Proposal of novel natural inhibitors of severe acute respiratory syndrome coronavirus 2 main protease: Molecular docking and ab initio fragment molecular orbital calculations	6
Dynamic interaction network involving the conserved intrinsically disordered regions in human eIF5	6
A novel assay for the determination of PreScission protease by capillary electrophoresis	6
Amyloid-Driven Allostery	5
Characterization of PARP1 binding to c-KIT1 G-quadruplex DNA: Insights into domain-specific interactions	5
Ca2+ binding shifts dimeric dual oxidase's truncated EF-hand domain to monomer	5
Identification of determinants of lipid and ion transport in TMEM16/anoctamin proteins through a Bayesian statistical analysis	5
Non-micellar ganglioside GM1 induces an instantaneous conformational change in Aβ42 leading to the modulation of the peptide amyloid-fibril pathway	5
Dietary polyphenols inhibit plasma protein arabinosylation: Biomolecular interaction of genistein and ellagic acid with serum albumins	5
Recent trends in analytical and digital techniques for the detection of the SARS-Cov-2	5
Editorial	5
The effect of various compounds on the COVID mechanisms, from chemical to molecular aspects	5
Reversible and irreversible mitochondrial swelling in vitro	5
Inside of the burst-phase intermediate of a protein folding. Hydration of hydrophobic groups	5
Neuroinflammation induced by amyloid-forming pancreatic amylin: Rationale for a mechanistic hypothesis	5
Native disulphide-linked dimers facilitate amyloid fibril formation by bovine milk αS2-casein	5
Dynamic properties of the layers of cupin-1.1 aggregates at the air/water interface	5
Richer than previously probed: An application of 1H NMR reveals one hundred metabolites using only fifty microliter serum	5
Linking B-factor and temperature-induced conformational transition	5
Chemical stabilization of γ-polyglutamate by chitosan and the effect of co-solvents on the stability	5
Nonpolar hydrophobic amino acids tune the enzymatic activity of lysozyme	5
A theoretical study on the effects of interdomain flexibility on drug encounter rate for coronavirus nucleocapsid-type proteins	5
On the importance of being amidated: Analysis of the role of the conserved C-terminal amide of amylin in amyloid formation and cytotoxicity	5
Analysis of the effect of 1-Allyl-3-Methylimidazolium chloride on thermodynamic stability, folding kinetics, and motional dynamics of horse cytochrome c	5