Animal Genetics

Article	Citations
Genomics to accelerate genetic improvement in tilapia	32
Evolution and domestication of the Bovini species	29
Domestic chicken diversity: Origin, distribution, and adaptation	29
Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds	26
All sheeps and sizes: a genetic investigation of mature body size across sheep breeds reveals a polygenic nature	24
Combined approaches to reveal genes associated with litter size in Yunshang black goats	24
Evolution of the sheep industry and genetic research in the United States: opportunities for convergence in the twenty‐first century	23
Online Mendelian Inheritance in Animals (OMIA): a record of advances in animal genetics, freely available on the Internet for 25 years	23
Identification of genes related to intramuscular fat independent of backfat thickness in Duroc pigs using single‐step genome‐wide association	22
Transcription factors regulate adipocyte differentiation in beef cattle	22
Trends towards revealing the genetic architecture of sheep tail patterning: Promising genes and investigatory pathways	22
Genetic and phenotypic consequences of early domestication in black soldier flies (Hermetia illucens)	20
Genome‐wide assessment of diversity and differentiation between original and modern Brown cattle populations	19
Identification of genes associated with litter size combining genomic approaches in Luzhong mutton sheep	18
Genome‐wide detection of copy number variants in European autochthonous and commercial pig breeds by whole‐genome sequencing of DNA pools identified breed‐characterising copy number states	18
Integration of whole‐genome DNA methylation data with RNA sequencing data to identify markers for bull fertility	17
Genome‐wide association studies for growth‐related traits in a crossbreed pig population	17
The Asp298Asn polymorphism of melanocortin‐4 receptor (MC4R) in pigs: evidence for its potential effects on MC4R constitutive activity and cell surface expression	15
Characterisation of sperm piRNAs and their correlation with semen quality traits in swine	15
A further survey of the quantitative trait loci affecting swine body size and carcass traits in five related pig populations	15
Canine coat pigmentation genetics: a review	15
Genome‐wide association study of milk production traits in a crossbred dairy sheep population using three statistical models	14
Genome‐wide association study reveals genes associated with the absence of intermuscular bones in tambaqui (Colossoma macropomum)	14
Three novel nonsense mutations of prolactin receptor found in heat‐tolerant Bos taurus breeds of the Caribbean Basin	13
Genetic dissection of reproductive performance of dairy cows under heat stress	13

Genome‐wide association study of fleece traits in Inner Mongolia Cashmere goats	13
Genome‐wide association study of shank length and diameter at different developmental stages in chicken F2 resource population	12
Origin and population structure of Brazilian hair sheep breeds	12
Discovery of selection‐driven genetic differences of Duroc, Landrace, and Yorkshire pig breeds by EigenGWAS and Fst analyses	12
Ear type in sheep is associated with the MSRB3 locus	12
Accurate prediction and genome‐wide association analysis of digital intramuscular fat content in longissimus muscle of pigs	12
New insights into genetics underlying of plumage color	12
Discovering lethal alleles across the turkey genome using a transmission ratio distortion approach	11
Genetic diversity in Iranian indigenous sheep vis‐à‐vis selected exogenous sheep breeds and wild mouflon	11
Breed difference and regulatory role of CRTC3 in porcine intramuscular adipocyte	11
Discriminating between allele‐ and genotype‐specific transmission ratio distortion	11
Mitochondrial sequence‐based evolutionary analysis of riverine–swamp hybrid buffaloes of India indicates novel maternal differentiation and domestication patterns	10
De novo mutation of KIT causes extensive coat white patterning in a family of Berber horses	10
Single‐marker and haplotype‐based genome‐wide association studies for the number of teats in two heavy pig breeds	10
Genetic basis of chicken plumage color in artificial population of complex epistasis	10
A genome‐wide association study revealed five SNPs affecting 8‐month weight in sheep	10
Mapping genes for phosphorus utilization and correlated traits using a 4k SNP linkage map in Japanese quail (Coturnix japonica)	10
Comparison of morphology and genetic diversity between broodstock and hybrid offspring of oriental river prawn, Macrobrachium nipponense based on morphological analysis and SNP markers	9
Genomic inbreeding and selection signatures in the local dairy breed Icelandic Cattle	9
Mining the 99 Lives Cat Genome Sequencing Consortium database implicates genes and variants for the Ticked locus in domestic cats (Felis catus)	9
Spatial genetic structure and historical demography of East Asian wild boar	9
Genome‐wide association study identifies markers associated with carcass and meat quality traits in Italian Large White pigs	9
Comparing the diversity of the casein genes in the Asian mouflon and domestic sheep	9
SNP‐based heritability and genetic architecture of cranial cruciate ligament rupture in Labrador Retrievers	9
Genome‐wide association studies for the number of teats and teat asymmetry patterns in Large White pigs	9
A genome‐wide association study for the number of teats in European rabbits (Oryctolagus cuniculus) identifies several candidate genes affecting this trait	9
Haplotype‐based genome‐wide association studies reveal new loci for haematological and clinical–biochemical parameters in Large White pigs	9
Parsing the microRNA genetics basis regulating skeletal muscle fiber types and meat quality traits in pigs	9
Comparison of growth performance and biochemical components between parent and hybrid offspring in the oriental river prawn, Macrobrachium nipponense	9
A genome‐wide association study reveals additive and dominance effects on growth and fatness traits in large white pigs	9
Targeted sequencing reveals candidate causal variants for dairy bull subfertility	9
Identification of new genes and quantitative trait locis associated with growth curve parameters in F2 chicken population using genome‐wide association study	9
An association study on imputed whole‐genome resequencing from high‐throughput sequencing data for body traits in crossbred pigs	9
Positive selection signatures in Anqing six‐end‐white pig population based on reduced‐representation genome sequencing data	8
Genome‐wide association study and inbreeding depression on body size traits in Qira black sheep (Ovis aries)	8
Copy number variants in genomes of local sheep breeds from Russia	8
Genome‐wide association study for feed efficiency in collective cage‐raised rabbits under full and restricted feeding	8
Genome‐wide selection signal analysis of Australian Boer goat reveals artificial selection imprinting on candidate genes related to muscle development	8
Genome‐wide association study reveals novel loci associated with fat‐deposition and meat‐quality traits in Pekin ducks	8
Genomic scan revealed KIT gene underlying white/gray plumage color in Chinese domestic geese	8
Genome‐wide SNP analysis clearly distinguished the Belarusian Red cattle from other European cattle breeds	8
Expression profiles of growth‐related genes in two Nile tilapia strains and their crossbred provide insights into introgressive breeding effects	8
Comparative genome‐wide methylation analysis of longissimus dorsi muscles in Yorkshire and Wannanhua pigs	8
The genomic architecture of South African mutton, pelt, dual‐purpose and nondescript sheep breeds relative to global sheep populations	8
Selection signatures for fiber production in commercial species: A review	8
Genome‐enabled prediction of reproductive traits in Nellore cattle using parametric models and machine learning methods	8
Non‐frameshift deletion on MITF is associated with a novel splashed white spotting pattern in horses (Equus caballus)	7
Identification and characterization of miRNAs during early pregnancy in domestic sheep	7
Genetic basis of muscle‐related traits in sheep: A review	7
Food intake‐related genes in chicken determined through combinatorial genome‐wide association study and transcriptome analysis	7

Genomic characteristics of four different geese populations in China	7
Copy number variation in HOXB7 and HOXB8 involves in the formation of beard trait in chickens	7
Genome scanning reveals novel candidate genes for vertebral and teat number in the Beijing Black Pig	7
Whole‐genome sequencing reveals breed‐differential CNVs between Tongcheng and Large White pigs	7
Fragile Foal Syndrome (PLOD1 c.2032G>A) occurs across diverse horse populations	7
Genetics of canine myxomatous mitral valve disease	7
Whole genome survey and genetic markers development of crocodile flathead Cociella crocodilus	7
Characterization of telomere length in Agerolese cattle breed, correlating blood and milk samples	6
Comparison of lipid metabolism between broodstock and hybrid offspring in the hepatopancreas of juvenile shrimp (Macrobrachium nipponense): Response to chronic ammonia stress	6
Impact of white‐spotting alleles, including W20, on phenotype in the American Paint Horse	6
Genetic signature of hybridization between Chinese spot‐billed ducks and domesticated ducks	6
Genome‐wide association study identifies variants associated with hair length in Brangus cattle	6
A 51 bp indel polymorphism within the PTH1R gene is significantly associated with chicken growth and carcass traits	6
Deletion of porcine BOLL is associated with defective acrosomes and subfertility in Yorkshire boars	6
Detecting the footprint of selection on the genomes of Murciano‐Granadina goats	6
Detection of selection signatures in Limousin cattle using whole‐genome resequencing	6
Identification of processed pseudogenes in the genome of Thoroughbred horses: Possibility of gene‐doping detection considering the presence of pseudogenes	6
A large‐scale genome‐wide association analysis reveals QTL and candidate genes for intramuscular fat content in Duroc pigs	6
Recognition and segmentation of individual pigs based on Swin Transformer	6
Analysis of recently duplicated TYRP1 genes and their effect on the formation of black patches in Oujiang‐color common carp (Cyprinus carpio var. color)	6
Resequencing and signatures of selection scan in two Siberian native sheep breeds point to candidate genetic variants for adaptation and economically important traits	6
Comparative analysis of swine leukocyte antigen gene diversity in European farmed pigs	6
Screening and detection of chromosomal copy number alterations in the domestic horse using SNP‐array genotyping data	6
Genetic variation in chicken interferon signalling pathway genes in research lines showing differential viral resistance	6
A functional mutation in the AMPD1 promoter region affects promoter activity and breast meat freshness in chicken	6
Genome‐wide association study revealed ABCD4 on SSC7 and GREB1L and MIB1 on SSC6 as crucial candidate genes for rib number i	6
Combined multivariate factor analysis and GWAS for milk fatty acids trait in Comisana sheep breed	6
Identification of candidate genes associated with slaughter traits in F2 chicken population using genome‐wide association study	6
Identification of a large dataset of SNPs in Larimichthys polyactis using high‐throughput 2b‐RAD sequencing	6
Trisomy 29 in a stillborn Swiss Original Braunvieh calf	6
The de novo assembly of a European wild boar genome revealed unique patterns of chromosomal structural variations and segmental duplications	5
A de novo missense mutation in KIT is responsible for dominant white spotting phenotype in a Standardbred horse	5
Investigating the population structure and genetic diversity of Arabian horses in Oman using SNP markers	5
De novo assembly and annotation of the North American bison (Bison bison) reference genome and subsequent variant identification	5
Estimation of genomic breed composition of individual animals in composite beef cattle	5
Integrative analysis of circRNAs from Yangtze River Delta white goat neck skin tissue by high‐throughput sequencing (circRNA‐seq)	5
The equine graying with age mutation of the STX17 gene: A copy number study using droplet digital PCR reveals a new pattern	5
Understanding the role of myoglobin content in Iberian pigs fattened in an extensive system through analysis of the transcriptome profile	5
Gene mapping reveals the association between tyrosine protein kinase Abl1 and the silk yield of Bombyxmori	5
Standardization of a SNP panel for parentage verification and identification in the domestic cat (Felis silvestris catus)	5
Genome‐wide scan for runs of homozygosity in Asian wild boars and Anqing six‐end‐white pigs	5
A novel homozygous nonsense mutation in ITGB4 gene causes epidermolysis bullosa in Mouton Vendéen sheep	5
QTL analysis for early growth in an intercross between native Japanese Nagoya and White Plymouth Rock chicken breeds using RAD sequencing‐based SNP markers	5
Potential functional variants in AHR signaling pathways are associated with age at puberty in swine	5
Altered expression of CYP17A1 and CYP19A1 in undescended testes of dogs with unilateral cryptorchidism	5
Integrating genome‐wide association study with RNA‐seq revealed DBI as a good candidate gene for intramuscular fat content in Beijing black pigs	5
Landmarks in the history of selective sweeps	5
A novel TYRP1 mutation associated with brown coat color in Siberian huskies	5
Genomic selection for meat quality traits in Pekin duck	5
All‐male production by marker‐assisted selection for sex determining loci of admixed Oreochromis niloticus and Oreochromis aureus stocks	5
Weighted gene co‐expression network analysis reveals potential candidate genes affecting drip loss in pork	5
Exploiting within‐breed variability in the autochthonous Reggiana breed identified several candidate genes affecting pigmentation‐related traits, stature and udder defects in cattle	5
Fatty acid desaturase 2 affects the milk‐production traits in Chinese Holsteins	5
Skin exhibits of Dark Ronald XX are homozygous wild type at the Warmblood fragile foal syndrome causative missense variant position in lysyl hydroxylase gene PLOD1	5
Assessment of the FAM174A 11G allele as a risk allele for equine metabolic syndrome	5
An analysis of skin thickness in the Dezhou donkey population and identification of candidate genes by RNA‐seq	5
A natural knockout of the MYO7A gene leads to pre‐weaning mortality in pigs	5
Deletion in KRT75L4 linked to frizzle feather in Xiushui Yellow Chickens	5
Siberian cats help in solving part of the mystery surrounding golden cats	5
Concordance rate in cattle and sheep between genotypes differing in Illumina GenCall quality score	5
Detection of selection signatures in South African Mutton Merino sheep using whole‐genome sequencing data	5
Identification of quantitative trait loci associated with calmness and gentleness in honey bees using whole‐genome sequences	5
Genome‐wide analysis suggests multiple domestication events of Chinese local pigs	5
Forensic DNA phenotyping: Canis familiaris breed classification and skeletal phenotype prediction using functionally significant skeletal SNPs and indels	5
Genetic architectures and selection signatures of body height in Chinese indigenous donkeys revealed by next‐generation sequencing	5
A joint analysis strategy reveals genetic changes associated with artificial selection between egg‐type and meat‐type ducks	5
Preliminary identification and analysis of differential RNA editing between higher and lower backfat thickness pigs using DNA‐seq and RNA‐seq data	4
Genome‐wide epistatic interactions of litter size at birth in Chinese indigenous pigs	4
A 63‐bp insertion in exon 2 of the porcine KIF21A gene is associated with arthrogryposis multiplex congenita	4
RNA sequencing analysis of the longissimus dorsi to identify candidate genes underlying the intramuscular fat content in Anqing Six‐end‐white pigs	4
A PNPLA8 frameshift variant in Australian shepherd dogs with hereditary ataxia	4
Comparison of immune defense and antioxidant capacity between broodstock and hybrid offspring of juvenile shrimp (Macrobrachium nipponense): Response to acute ammonia stress	4
FGF5 missense mutation is associated with dromedary hair length variation	4
Colour‐sidedness in Gloucester cattle is associated with a complex structural variant impacting regulatory elements downstream of KIT	4
Improving the resolution of canine genome‐wide association studies using genotype imputation: A study of two breeds	4
ARSB gene variants causing Mucopolysaccharidosis VI in Miniature Pinscher and Miniature Schnauzer dogs	4
Bos taurus haplotypes segregating in Nellore (Bos indicus) cattle	4
SNP discovery and population structure analysis in Lassi and Marecha camel breeds using a genotyping by sequencing method	4
Comprehensive analysis of lncRNA and mRNA expression changes in Tibetan chicken lung tissue between three developmental stages	4
Cross‐species conservation of a transposase‐linked element enables genetic sexing of commercial populations of Russian sturgeon (Acipenser gueldenstaedtii)	4

Genetic diversity and selection signatures of four indigenous pig breeds from eastern China	4
Roan, ticked and clear coat patterns in the canine are associated with three haplotypes near usherin on CFA38	4
Assessment of copy number variants in three Brazilian locally adapted cattle breeds using whole‐genome re‐sequencing data	4
Association of inbreeding and regional equine leucocyte antigen homozygosity with the prevalence of insect bite hypersensitivity in Old Kladruber horse	4
Identification of critical lncRNAs for milk fat metabolism in dairy cows using WGCNA and the construction of a ceRNAs network	4
Thoroughbred stallion fertility is significantly associated with FKBP6 genotype but not with inbreeding or the contribution of a leading sire	4
Integrated microRNA–mRNA analysis reveals the roles of microRNAs in the muscle fat metabolism of Yanbian cattle	4
The effect of high‐density genotypic data and different methods on joint genomic prediction: A case study in large white pigs	4
De novo stop‐lost germline mutation in FGFR3 causes severe chondrodysplasia in the progeny of a Holstein bull	4
A deletion in the MC1R gene alters coat color in Guzerat cattle	4
An integration analysis based on genomic, transcriptomic and QTX information reveals credible candidate genes for fat‐related traits in pigs	4
A study using single‐locus and multi‐locus genome‐wide association study to identify genes associated with teat number in Hu sheep	4
Evaluation of truncating variants in the LCORL gene in relation to body size of goats from Switzerland	4
Absence of known feline MYH7 and MYBPC3 variants in a diverse cohort of cats with hypertrophic cardiomyopathy	4
Genome‐wide association study of resistance/susceptibility to infectious bovine keratoconjunctivitis in Brazilian Hereford cattle	3
Study on the concordance between different SNP‐genotyping platforms in sheep	3
Genome‐wide single nucleotide polymorphism array and whole‐genome sequencing reveal the inbreeding progression of Banna minipig inbred line	3
Validation of DNA test for hip dysplasia failed in Danish Labrador Retrievers	3
Genome‐wide re‐sequencing data reveals the genetic diversity and population structure of Wenchang chicken in China	3
Rabbits – their domestication and molecular genetics of hair coat development and quality	3
Characterisation of eight cattle with Swyer syndrome by whole‐genome sequencing	3
Inheritance of the SLICK1 allele of PRLR in cattle	3
Comparison of major histocompatibility complex‐B variability in Sri Lankan indigenous chickens with five global chicken populations using MHC‐B SNP panel	3
Genome‐wide association studies for iris pigmentation and heterochromia patterns in Large White pigs	3
Optimizing genomic prediction using low‐density marker panels for streptococcosis resistance in red tilapia (Oreochromis spp.)	3
Simulated validation of intron‐less transgene detection using DELLY for gene‐doping control in horse sports	3
Development of a high‐resolution typing method for SLA‐3, swine MHC class I antigen 3	3
Identification of imprinted genes in the skeletal muscle of newborn piglets by high‐throughput sequencing	3
Integration analyses of structural variations and differential gene expression associated with beef fatty acid profile in Nellore cattle	3
A deletion variant within the FGF5 gene in goats is associated with gene expression levels and cashmere growth	3
Identification of a large dataset of SNPs in hair‐fin anchovy (Setipinna tenuifilis) based on RAD‐seq	3
Whole genome sequencing identifies a homozygous nonsense mutation in the JPH2 gene in Shih Tzu dogs with progressive retinal atrophy	3
Genome‐wide association studies demonstrate the genes associated with perimysial thickness in ducks	3
Combined approaches identify known and novel genes associated with sheep litter size and non‐seasonal breeding	3
Preliminary population genomic study on the sandfish Holothuria (Metriatyla) scabra	3
Golden cats: The story goes on	3
Comparative analyses of copy number variations between swamp buffaloes and river buffaloes	3
Identification and characterisation of mitochondrial sequences integrated into the ovine nuclear genome	3
Two quantitative trait loci are associated with recapping of Varroa destructor‐infested brood cells in Apis mellifera mellifera	3
Genome‐wide association study and pathway analysis for carcass fatness in Nellore cattle measured by ultrasound	3
Identification of suitable reference genes for normalization of quantitative real‐time PCR‐based gene expression in chicken (Gallus gallus)	3
Integrated analysis of whole genome and transcriptome sequencing reveals a frameshift mutation associated with recessive embryonic lethality in Holstein cattle	3
Genetic polymorphisms within the ETAA1 gene associated with growth traits in Chinese sheep breeds	3
Shadow coat colour in American mink associated with a missense mutation in the KIT gene	3
Genetic basis investigation of wattle phenotype in goat using genome‐wide sequence data	3
Genome‐wide re‐sequencing reveals population structure and genetic diversity of Bohai Black cattle	3
Efficiency of genotyping by sequencing in inferring genomic relatedness and molecular insights into fat tail selection in Tunisian sheep	3
Broad maternal geographic origin of domestic sheep in Anatolia and the Zagros	3
KRT5 missense variant in a Cardigan Welsh Corgi with epidermolysis bullosa simplex	3
Red and blond Mangalitza pigs display a signature of divergent directional selection in the SLC45A2 gene	3
A comparative whole genome sequencing analysis identified a candidate locus for lack of operculum in cultivated gilthead seabream (Sparus aurata)	3
Heteropaternal superfecundation frequently occurs in multiple‐bearing mob‐mated sheep	3
The curly coat phenotype of the Ural Rex feline breed is associated with a mutation in the lipase H gene	3
Altered fibrinogen level and fibrin clot structure in myostatin homozygous mutant pig	3
Analysis of pedigree data and whole‐genome sequences in 12 cattle breeds reveals extremely low within‐breed Y‐chromosome diversity	3
Genome‐wide association study reveals new QTL and functional candidate genes for the number of ribs and carcass length in pigs	3
Polymorphisms in canine immunoglobulin heavy chain gene cluster: a double‐edged sword for diabetes mellitus in the dog	2
MHC class I‐α population differentiation in a commercial fish, the European sea bass (Dicentrarchus labrax)	2
Genetic variations for egg internal quality of ducks revealed by genome‐wide association study	2
Copy number variation association studies for sheep tail‐relevant traits in Hulunbuir sheep	2
Genome‐wide association study reveals a genomic region on SSC7 simultaneously associated with backfat thickness, skin thickness and carcass length in a Large White × Tongcheng advanced gene	2
Mitochondrial fission factor (MFF) frameshift variant in Bullmastiffs with mitochondrial fission encephalopathy	2
Sequence variants of the canine melanocyte inducing transcription factor (MITF) locus reveal a common MITF‐A processed pseudogene	2
Transcriptomic analysis of eyelid pigmentation in Hereford cattle	2
Integration of GWAS and eGWAS to screen candidate genes underlying green head traits in male ducks	2
Two single nucleotide variants in the miR‐23a promoter affect granulosa cell apoptosis	2
Integrative genomics analysis highlights functionally relevant genes for equine behaviour	2
Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome	2
The KIT:c.376G>A variant in German and Swiss alpacas (Vicugna pacos) with different coat colors	2
Population structure and genomic footprints of selection in five major Iranian horse breeds	2
Full‐length transcriptome sequencing reveals extreme incomplete annotation of the goat genome	2
Golden cats: A never‐ending story!	2
Constitutional trisomy 20 in an aborted Holstein fetus with pulmonary hypoplasia and anasarca syndrome	2
A genetic investigation of equine recurrent uveitis in the Icelandic horse breed	2
Non‐contact detection method of pregnant sows backfat thickness based on two‐dimensional images	2
Characterisation and comparison of immune response mechanisms in an indigenous and a commercial pig breed after classical swine fever vaccination	2
A high‐density genetic linkage map for Chinese perch (Siniperca chuatsi) using 2.3K genotyping‐by‐sequencing SNPs	2
A de novo start‐lost variant in ANKRD28 in a Holstein calf with dwarfism	2
Evidence of rare misassemblies in the bovine reference genome revealed by population genetic metrics	2
Computer vision system using deep learning to predict rib and loin yield in the fish Colossoma macropomum	2
Identification of genetic effects and potential causal polymorphisms of CPM gene impacting milk fatty acid traits in Chinese Holstein	2
Opportunity to improve livestock traits using 3D genomics	2
Genome‐wide association study for carcass traits in Hanwoo cattle using additional relatives' information of non‐genotyped animals	2
Alternative polyadenylation events differ dramatically between Tongcheng and Large White pigs in response to PRRSV infection	2
Markers with low GenTrain scores can generate spurious signals in genome‐wide scans for transmission ratio distortion	2
Development of a 19‐plex short tandem repeat typing system for individual identification and parentage testing of horses (Equus caballus)	2
The TNNT2:c.95‐108G>A variant is common in Maine Coons and shows no association with hypertrophic cardiomyopathy	2
Roan coat color in livestock	2
Comparison of genomic prediction methods for residual feed intake in broilers	2
Copy number variation of the SRY gene showed an association with disorders of sex development in Yorkshire Terrier dogs	2
Genome‐wide association study identified the candidate genes associated with angel wing trait in Pekin duck	2
Risk factors for, and genetic association with, intestinal atresia in dairy calves	2
A mutation modulating DDX3Y gene expression cosegregates with the major Y‐chromosomal haplogroups and with testis size in Hu sheep	2
Resequencing the Yaroslavl cattle genomes reveals signatures of selection and a rare haplotype on BTA28 likely to be related to breed phenotypes	2
Genomic regions underlying positive selection in local, Alpine cattle breeds	2