Animal Genetics

Article	Citations
A new Finnish flavor of feline coat coloration, “salmiak,” is associated with a 95‐kb deletion downstream of the KIT gene	51
Whole‐genome resequencing reveals diversity and selective signals in the Wuxue goat	33
Identification and characterisation of mitochondrial sequences integrated into the ovine nuclear genome	29
Genome‐wide DNA methylation and transcription analysis in tongue and biceps femoris muscles of cloned pigs with macroglossia	24
Transcriptome annotation of 17 porcine tissues using nanopore sequencing technology	24
The first genome‐wide association study concerning idiopathic epilepsy in Petit Basset Griffon Vendeen	22
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Identification of KIT gene transcript variants in white spotted river buffalo (Bubalus bubalis)	19
Heterozygous KRT10 missense variant in a Chihuahua with severe epidermolytic ichthyosis	18
Intragenic duplication disrupting the reading frame of MFSD8 in Small Swiss Hounds with neuronal ceroid lipofuscinosis	18
Genomic selection for meat quality traits in Pekin duck	15
A missense mutation in the tyrosinase gene explains acromelanism in domesticated canaries	15
Genetic diversity and selection signatures of four indigenous pig breeds from eastern China	15
Naturally occurring genetic diseases caused by de novo variants in domestic animals	14
Comparison of morphology and genetic diversity between broodstock and hybrid offspring of oriental river prawn, Macrobrachium nipponense based on morphological analysis and SNP markers	14
Detection of selection signatures in South African Mutton Merino sheep using whole‐genome sequencing data	14
Issue Information	14
Mutation c.−379 C>T in DGAT1 affects intramyocellular lipid content by altering MYOD1 binding affinity	14
The genomic landscape of short tandem repeats in cattle	13
Siberian cats help in solving part of the mystery surrounding golden cats	13
Identification of polymorphic markers for germplasm conservation of three precious Chinese palace goldfish using whole‐genome sequencing	13
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Full‐length transcriptome sequencing reveals extreme incomplete annotation of the goat genome	13
Evaluation of imputation possibility from low‐density SNP panel in composite Vrindavani cattle	13
Genome‐wide re‐sequencing reveals regulatory genes and variants involved in the regulation of intermittent fertilization intensity in Wenchang chickens	13

The role of G protein‐coupled receptors and their ligands in animal domestication	12
Genome‐wide association studies demonstrate the genes associated with perimysial thickness in ducks	12
Genetic variations for egg internal quality of ducks revealed by genome‐wide association study	12
Exonisation of an intronic L1 element in the dystrophin gene associated with X‐linked muscular dystrophy in a Border Collie dog	12
A further survey of the quantitative trait loci affecting swine body size and carcass traits in five related pig populations	12
Heterozygous ASPRV1 frameshift variant in a Pembroke Welsh Corgi with ichthyosis	12
Characterization and functional analysis of lncRNA2690 in regulating the growth cycle of the hair follicle in rabbits	11
Comparison of long non‐coding RNAs in adipose and muscle tissues between seven indigenous Chinese and the Yorkshire pig breeds	11
Rare cases of hernia of the linea alba among TWIST1 haploinsufficient Charolais cattle	11
Functional SNPs in SYISL promoter significantly affect muscle fiber density and muscle traits in pigs	11
Issue Information	10
Issue Information	10
Genome‐wide population structure, homozygosity, and heterozygosity patterns of Nero Siciliano pig in the framework of Italian and cosmopolitan breeds	10
PMM2 and NARFL are paternally imprinted genes in bovines	10
Identification of processed pseudogenes in the genome of Thoroughbred horses: Possibility of gene‐doping detection considering the presence of pseudogenes	10
Improved MeSH analysis software tools for farm animals	9
EquCab_Finn: A new reference genome assembly for the domestic horse, Finnhorse	9
Evaluating three strategies of genome‐wide association analysis for integrating data from multiple populations	9
Deafness in Australian Cattle Dogs associated to QTL on chromosome 20 in genome‐wide association study analyses	9
Risk factors for, and genetic association with, intestinal atresia in dairy calves	9
Genomic regions underlying positive selection in local, Alpine cattle breeds	9
Issue Information	9
Identification of genomic regions associated with resistance to gastrointestinal parasites in an indigenous sheep by single‐ and multiple‐locus methods	9
Insights into the genetics of body size in the Bull Terrier	9
Genome‐wide association analysis revealed new QTL and candidate genes affecting the teat number in Dutch Large White pigs	9
Transcriptomic profile of longissimus thoracis associated with fatty acid content in Nellore beef cattle	9
Non‐contact detection method of pregnant sows backfat thickness based on two‐dimensional images	8
Comparison of two methods of sperm‐ and testis‐mediated gene transfer in production of transgenic animals: A systematic review	8
ALAS1 associated with goat kidding number trait was regulated by the transcription factor ASCL2 to affect granulosa cell proliferation	8
Identifying selection signatures and runs of homozygosity for spine curvature in Chinese indigenous pigs	8
Identification of differentially expressed genes and polymorphisms related to intramuscular oleic‐to‐stearic fatty acid ratio in pigs	8
Genetic polymorphisms within the ETAA1 gene associated with growth traits in Chinese sheep breeds	8
Identification of critical lncRNAs for milk fat metabolism in dairy cows using WGCNA and the construction of a ceRNAs network	8
Genome‐wide association study identified five quantitative trait loci and two candidate genes for digestive traits in Suhuai pigs	8
A deletion variant within the FGF5 gene in goats is associated with gene expression levels and cashmere growth	8
ZFAT (isoform‐specific) and its antisense RNA 1 (ZFAT‐AS1) are two allele‐specific monoallelically expressed genes in cattle	8
Selection signatures for fiber production in commercial species: A review	8
De novo assembly of a wild swan goose (Anser cygnoides) genome	8
Issue Information	8
Copy number variants in genomes of local sheep breeds from Russia	8
Estimates of genomic inbreeding and identification of candidate regions in Beijing‐You chicken populations	7
Identification of imprinted genes in the skeletal muscle of newborn piglets by high‐throughput sequencing	7
Phenotypic correlations of carpal gland diverticular number with production traits and its genome‐wide association analysis in multiple pig populations	7
A confirmed association betweenDNAvariants inCAPN9,OSM, andITGAMcandidate genes and the risk of umbilical hernia in pigs	7
Differences in allele frequencies of personality‐related genes in three varieties of Shiba Inu in Japan	7
MYH3‐associated non‐syndromic palatoschisis (cleft palate, CP) in Limousine cattle	7
Whole genome resequencing reveals candidate genes for postaxial polydactyly in Large White pigs	7
Domestic chicken diversity: Origin, distribution, and adaptation	7
Genome sequencing and assembly of feral chickens in the wild of Sulawesi, Indonesia	7
No trade‐off between growth and OsHV‐1 tolerance in Pacific oysters (Crassostrea gigas) farmed on the West Coast, USA	7

RNA sequencing analysis reveals that missense mutation in SOX10 is associated with iris color phenotype in quail	7
Allele frequencies of PRLR truncating variants in heat‐tolerant taurine cattle native to Latin America	7
Heterozygous ATP2A2 missense variant identified in a Shih Tzu with Darier disease	7
Occurrence of the dominant black KB allele of CBD103 in German Shepherd Dogs	7
Genotype‐by‐environment interactions in beef and dairy cattle populations: A review of methodologies and perspectives on research and applications	7
Whole‐genome resequencing uncovers diversity and selective sweep in Kazakh cattle	7
Canine transmissible venereal tumor – From general to molecular characteristics: A review	7
Identification of quantitative trait loci associated with calmness and gentleness in honey bees using whole‐genome sequences	7
Identification of candidate genes associated with milk production and mastitis based on transcriptome‐wide association study	7
Systematic selection of microsatellite for paternity testing of yak	7
KRT5 in‐frame deletion in a family of German Shepherd dogs with split paw pad disease resembling localized epidermolysis bullosa simplex in human patients	6
A novel QTL region for pH and meat color in Duroc pigs	6
Characterisation of eight cattle with Swyer syndrome by whole‐genome sequencing	6
Unexpected recombination at the polled locus in a horned Holstein calf from the mating of a homozygous polled sire and a heterozygous polled cow	6
Candidate causative variant for xanthinuria in a Domestic Shorthair cat	6
Issue Information	6
Standardization of a SNP panel for parentage verification and identification in the domestic cat (Felis silvestris catus)	6
Pleiotropic architectures of porcine immune and growth trait pairs revealed by a self‐product‐based transcriptome method	6
Roan coat color in livestock	6
Multiomic meta‐analysis suggests a correlation between steroid hormone‐related genes and litter size in goats	6
Sequence variants of the canine melanocyte inducing transcription factor (MITF) locus reveal a common MITF‐A processed pseudogene	6
A metagenomic survey of the fecal microbiome of the African savanna elephant (Loxodonta africana)	6
Genome‐wide association study of three litter traits in Yorkshire pigs	6
Investigation of the effect of missense mutations in AHR and DNAH11 on feed conversion ratio and average daily residual feed intake in Duroc, Landrace and Yorkshire pigs	6
Genome‐wide study suggests inheritance of personality traits in Toy Poodles and Miniature Dachshunds	6
DYRK1B haploinsufficiency in a Holstein cattle with epilepsy	6
Yak miR‐2285o‐3p attenuates hypoxia‐induced apoptosis by targeting caspase‐3	5
Assessing genomic diversity and signatures of selection in Qingyuan Wapiti	5
Copy number variation association studies for sheep tail‐relevant traits in Hulunbuir sheep	5
Issue Information	5
Bos taurus haplotypes segregating in Nellore (Bos indicus) cattle	5
Issue Information	5
Assessing the current genetic status of Lubei white goat based on the whole‐genome data	5
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An updated Axiom buffalo genotyping array map and mapping of cattle quantitative trait loci to the new water buffalo reference genome assembly	5
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A PNPLA8 frameshift variant in Australian shepherd dogs with hereditary ataxia	5
Integrative genomics analysis highlights functionally relevant genes for equine behaviour	5
Thoroughbred stallion fertility is significantly associated with FKBP6 genotype but not with inbreeding or the contribution of a leading sire	5
A germline de novo variant in NUMB associated with a double‐outlet right ventricle in Chianina cattle	5
In Memoriam	5
Detecting chromosomal rearrangements in boars using Hi‐C	5
The c.612A>G mutation of MC4R affects constitutive activity and signaling in domestic goats	5
Broad maternal geographic origin of domestic sheep in Anatolia and the Zagros	5
Frequency of RPGRIP1 and MAP9 genetic modifiers of canine progressive retinal atrophy, in 132 breeds of dog	5
STK36 splice site variant in an Australian Shepherd dog with primary ciliary dyskinesia	5
Corrigendum	5
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A meta‐analysis of mRNA expression profiling studies in sheep with different FecB genotypes	5
Sequence variants of the canine melanocyte inducing transcription factor (MITF) locus reveal a common MITF‐A processed pseudogene	5
White coat color of a Black Angus calf attributed to an occurrence of the delR217 variant of MITF	4
H3K27ac modification and transcription characteristics of adipose and muscle tissues in Chuxiang Black pig	4
Targeted sequencing reveals candidate causal variants for dairy bull subfertility	4
Preliminary identification and analysis of differential RNA editing between higher and lower backfat thickness pigs using DNA‐seq and RNA‐seq data	4
Genetic basis of muscle‐related traits in sheep: A review	4
Characterization of telomere length in Agerolese cattle breed, correlating blood and milk samples	4
Npc1 gene mutation abnormally activates the classical Wnt signalling pathway in mouse kidneys and promotes renal fibrosis	4
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Genetic evaluation of small ruminant lentivirus susceptibility in Valais blacknose sheep	4
Issue Information	4
Integration analyses of structural variations and differential gene expression associated with beef fatty acid profile in Nellore cattle	4
A de novo 2.3 kb structural variant in MITF explains a novel splashed white phenotype in a Thoroughbred family	4
Genomic analysis of 10 years of artificial selection in community‐based breeding programs in two Ethiopian indigenous sheep breeds	4
Stock‐type equine disciplines Hunter, Reining and Roping are associated with the A allele at the DMRT3 locus for gait phenotypes in the horse	4
Integrated analysis of whole genome and transcriptome sequencing reveals a frameshift mutation associated with recessive embryonic lethality in Holstein cattle	4
Functional characterization of cAMP signaling of variant porcine MC1R alleles in PK15 cells	4
A network‐based approach to understanding gene–biological processes affecting economically important traits of Nelore cattle	4
Mitochondrial fission factor (MFF) frameshift variant in Bullmastiffs with mitochondrial fission encephalopathy	4
Genetic variation in chicken interferon signalling pathway genes in research lines showing differential viral resistance	4
Genome‐wide association analysis identifies candidate genes for carcass yields in Peking ducks	4
Selective sweep analysis of the adaptability of the Yarkand hare (Lepus yarkandensis) to hot arid environments using SLAF‐seq	4
Genome‐wide association studies for loin muscle area, loin muscle depth and backfat thickness in DLY pigs	3
Heterozygous COL5A1 deletion in a cat with classical Ehlers–Danlos syndrome	3
A structural variant at ASIP associated with the darkness of hair coat is found in multiple zebu cattle populations	3
Associated regions for multiple birth in Brown Swiss and Original Braunvieh cattle on chromosomes 15 and 11	3
Development and validation of SNP markers for giant panda using a kompetitive allele specific PCR approach	3
Whole‐genome sequencing of alpaca revealed variants in KIT gene potentially associated with the white coat phenotype	3
Univariate and multivariate genome‐wide association studies for hematological traits in Murciano‐Granadina goats	3
Genome‐wide association study reveals candidate genes for pollution excreta traits in pigs	3
The MYH3 gene variant (g.‐1805_‐1810, ACGT) affects endophenotypes of myoglobin oxidation–reduction states in porcine muscles	3

Comprehensive analysis of mitogenome of native Henan pig breeds with 58 worldwide pig breeds	3
Issue Information	3
Evolution of the sheep industry and genetic research in the United States: opportunities for convergence in the twenty‐first century	3
Comparative genome‐wide association study of single‐ and multi‐locus models with ontology analysis for enhancing Hanwoo cow reproductive traits	3
A panel of tetranucleotide STR markers as an alternative approach to forensic DNA identification of wolf and dog	3
Whole‐genome identification of transposable elements reveals the equine repetitive element insertion polymorphism in Chinese horses	3
Optimizing genomic prediction using low‐density marker panels for streptococcosis resistance in red tilapia (Oreochromis spp.)	3
Equine STX17 intronic triplication confirmed by droplet digital PCR analysis of its breakpoints	3
Inheritance of the SLICK1 allele of PRLR in cattle	3
Modeling microRNA‐driven post‐transcriptional regulation using exon–intron split analysis in pigs	3
Inbreeding depression and durability in the North American Thoroughbred horse	3
GTP cyclohydrolase II (gch2) and axanthism in ball pythons: A new vertebrate model for pterin‐based pigmentation	3
Single‐step genome‐wide association study reveals candidate genes for body mass index trait in Yunong‐black pigs	3
Core competing endogenous RNA network based on mRNA and non‐coding RNA expression profiles in chicken fatty liver	3
A study using single‐locus and multi‐locus genome‐wide association study to identify genes associated with teat number in Hu sheep	3
Issue Information	3
Comparison of immune defense and antioxidant capacity between broodstock and hybrid offspring of juvenile shrimp (Macrobrachium nipponense): Response to acute ammonia stress	3
Genome‐wide association studies on body weight in Loumen ducks	3
Identification of candidate genes associated with slaughter traits in F2 chicken population using genome‐wide association study	3
Genetics of canine myxomatous mitral valve disease	3
Comparative analysis of swine leukocyte antigen gene diversity in European farmed pigs	3
A genome‐wide association study reveals additive and dominance effects on growth and fatness traits in large white pigs	3
pyRSD‐CoEv: A python package for selective sweep detection and co‐evolutionary gene cluster identification	2
A de novo mutation in CACNA1A is associated with autosomal dominant bovine familial convulsions and ataxia in Angus cattle	2
MHC class I‐α population differentiation in a commercial fish, the European sea bass (Dicentrarchus labrax)	2
History and genetic diversity of African sheep: Contrasting phenotypic and genomic diversity	2
Residual network improves the prediction accuracy of genomic selection	2
Standards in wildlife forensic science, with a focus on non‐human DNA analysis	2
Construction of a high‐density linkage map and QTL detection for growth traits in South African abalone (Haliotis midae)	2
Genome‐wide association study identifies variants associated with semen volume in white‐feathered broilers	2
RNA sequencing analysis of the longissimus dorsi to identify candidate genes underlying the intramuscular fat content in Anqing Six‐end‐white pigs	2
A natural knockout of the MYO7A gene leads to pre‐weaning mortality in pigs	2
Lymphoid enhancer binding factor 1 is associated with nose color in Yunong black pigs	2
KRT5 missense variant in a Cardigan Welsh Corgi with epidermolysis bullosa simplex	2
Genetic basis investigation of wattle phenotype in goat using genome‐wide sequence data	2
Whole genome survey and genetic markers development of crocodile flathead Cociella crocodilus	2
Shadow coat colour in American mink associated with a missense mutation in the KIT gene	2
Genome‐wide association study identifies variants associated with AFS and GL in Danish Yorkshire pig population	2
Whole genome sequencing identifies candidate genes and mutations that can explain diluted and other colour varieties of domestic canaries (Serinus canaria)	2
A de novo start‐lost variant in ANKRD28 in a Holstein calf with dwarfism	2
Resequencing the Yaroslavl cattle genomes reveals signatures of selection and a rare haplotype on BTA28 likely to be related to breed phenotypes	2
Towards identification of new genetic determinants for post‐weaning diarrhea in piglets	2
RNA sequencing analysis reveals key genes and pathways associated with feather pigmentation in mule ducks	2
Deletion in KRT75L4 linked to frizzle feather in Xiushui Yellow Chickens	2
Whole genome sequencing identifies a homozygous nonsense mutation in the JPH2 gene in Shih Tzu dogs with progressive retinal atrophy	2
Trisomy 26 in a Holstein calf with disorders of sex development	2
Topologically associating domains in the POLLED region are the same for Angus‐ and Brahman‐specific Hi‐C reads from F1 hybrid fetal tissue	2
Canine reference genome accuracy impacts variant calling: Lessons learned from investigating embryonic lethal variants	2
Genome‐wide association study revealed ABCD4 on SSC7 and GREB1L and MIB1 on SSC6 as crucial candidate genes for rib number i	2
Identification of a novel QTL for lean meat percentage using imputed genotypes	2
Genome‐wide association study identified the candidate genes associated with angel wing trait in Pekin duck	2
Sexing assay for chickens and other birds for large‐scale application based on a conserved sequence variant in CHD1 genes on W and Z chromosomes	2
A case of tibial hemimelia in a German Galloway calf is associated with a novel mutation in the ALX4 gene	2
Genome‐wide single nucleotide polymorphism array and whole‐genome sequencing reveal the inbreeding progression of Banna minipig inbred line	2
Computer vision system using deep learning to predict rib and loin yield in the fish Colossoma macropomum	2
X monosomy in a British shorthair cat with skeletal abnormalities and behavioral problems	2
PC‐DOT: Improving genomic prediction ability of principal component regression by DOT product	2
A large‐scale genome‐wide association analysis reveals QTL and candidate genes for intramuscular fat content in Duroc pigs	2
Review: Wildlife forensic genetics—Biological evidence, DNA markers, analytical approaches, and challenges	2
Genetic Eye Diseases in Animals: A Selected Review of Recent Advances	2
Genome‐wide association study for carcass traits in Hanwoo cattle using additional relatives' information of non‐genotyped animals	2
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Candidate signatures of positive selection for environmental adaptation in indigenous African cattle: A review	2
Issue Information	2
A purebred South American breed showing high effective population size and independent breed ancestry: The Chilean Terrier	2
Single and longitudinal genome‐wide association studies for dairy traits available in goats with three recorded lactations	2
Differential expression of ASIP transcripts reveals genetic mechanism underpinning black‐tail independence from body plumage in yellow‐bodied chickens	2
Unique genetic signature and selection footprints in Dutch population of German Longhaired Pointer dogs	1
Development of a high‐throughput screening method for the detection of 188 pathogenic variants and its application in Mishima cattle	1
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Issue Information	1
RNAseq reveals modulation of genes involved in fatty acid biosynthesis in chicken liver according to genetic background, sex, and diet	1
Heritability of insidious uveitis in Appaloosa horses	1
A de novo variant in the bovine ADAMTSL4 gene in an Original Braunvieh calf with congenital cataract	1
Alternative polyadenylation events differ dramatically between Tongcheng and Large White pigs in response to PRRSV infection	1
The role of genetic variability of the host on the resistance to Neospora caninum infection in cattle	1
A genetic investigation of equine recurrent uveitis in the Icelandic horse breed	1
Issue Information	1
The 4 bp deletion mutation in HOXD1 gene determines the polycerate trait in Chinese Sishui fur sheep	1
Identification of population‐informative markers from high‐density genotyping data through combined feature selection and machine learning algorithms: Application to European autochthonous and cosmopo	1
Genome‐wide re‐sequencing data reveals the genetic diversity and population structure of Wenchang chicken in China	1
Weighted genomic prediction for growth and carcass‐related traits in Nelore cattle	1
New insights into genetics underlying of plumage color	1
Inference of ancestral alleles in the pig reference genome	1
Identification of potential biomarkers associated with meat tenderness in Hanwoo (Korean cattle): An expression quantitative trait loci analysis	1
Maternal genetic diversity of ancient goats in Finland and Estonia and comparison with extant northern European goat breeds	1
Genome‐wide analysis suggests multiple domestication events of Chinese local pigs	1
Genome‐wide association studies for the number of piglets born alive and dead in Dongliao black pigs	1
Issue Information	1
Combined approaches identify known and novel genes associated with sheep litter size and non‐seasonal breeding	1
Golden cats: A never‐ending story!	1
Comparison of major histocompatibility complex‐B variability in Sri Lankan indigenous chickens with five global chicken populations using MHC‐B SNP panel	1
Preliminary population genomic study on the sandfish Holothuria (Metriatyla) scabra	1
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Integrative analysis of circRNAs from Yangtze River Delta white goat neck skin tissue by high‐throughput sequencing (circRNA‐seq)	1