Animal Genetics

Article	Citations
Domestic chicken diversity: Origin, distribution, and adaptation	40
Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds	29
Online Mendelian Inheritance in Animals (OMIA): a record of advances in animal genetics, freely available on the Internet for 25 years	29
Evolution of the sheep industry and genetic research in the United States: opportunities for convergence in the twenty‐first century	27
Trends towards revealing the genetic architecture of sheep tail patterning: Promising genes and investigatory pathways	25
Identification of genes associated with litter size combining genomic approaches in Luzhong mutton sheep	24
Genome‐wide assessment of diversity and differentiation between original and modern Brown cattle populations	23
Genome‐wide association studies for growth‐related traits in a crossbreed pig population	21
Canine coat pigmentation genetics: a review	19
Three novel nonsense mutations of prolactin receptor found in heat‐tolerant Bos taurus breeds of the Caribbean Basin	18
Genome‐wide association study of fleece traits in Inner Mongolia Cashmere goats	18
A further survey of the quantitative trait loci affecting swine body size and carcass traits in five related pig populations	17
Characterisation of sperm piRNAs and their correlation with semen quality traits in swine	16
Identification of new genes and quantitative trait locis associated with growth curve parameters in F2 chicken population using genome‐wide association study	16
Genetic basis of muscle‐related traits in sheep: A review	15
Detection of selection signatures in South African Mutton Merino sheep using whole‐genome sequencing data	15
New insights into genetics underlying of plumage color	14
Accurate prediction and genome‐wide association analysis of digital intramuscular fat content in longissimus muscle of pigs	14
Analysis of recently duplicated TYRP1 genes and their effect on the formation of black patches in Oujiang‐color common carp (Cyprinus carpio var. color)	13
Origin and population structure of Brazilian hair sheep breeds	13
Genome‐wide selection signal analysis of Australian Boer goat reveals artificial selection imprinting on candidate genes related to muscle development	12
Genetic basis of chicken plumage color in artificial population of complex epistasis	12
Single‐marker and haplotype‐based genome‐wide association studies for the number of teats in two heavy pig breeds	12
Mining the 99 Lives Cat Genome Sequencing Consortium database implicates genes and variants for the Ticked locus in domestic cats (Felis catus)	12
Genomic scan revealed KIT gene underlying white/gray plumage color in Chinese domestic geese	11

Genome‐enabled prediction of reproductive traits in Nellore cattle using parametric models and machine learning methods	11
Selection signatures for fiber production in commercial species: A review	11
Parsing the microRNA genetics basis regulating skeletal muscle fiber types and meat quality traits in pigs	11
A genome‐wide association study for the number of teats in European rabbits (Oryctolagus cuniculus) identifies several candidate genes affecting this trait	11
Mapping genes for phosphorus utilization and correlated traits using a 4k SNP linkage map in Japanese quail (Coturnix japonica)	10
A functional mutation in the AMPD1 promoter region affects promoter activity and breast meat freshness in chicken	10
Genomic inbreeding and selection signatures in the local dairy breed Icelandic Cattle	10
Copy number variants in genomes of local sheep breeds from Russia	10
Landmarks in the history of selective sweeps	10
A genome‐wide association study reveals additive and dominance effects on growth and fatness traits in large white pigs	10
Genome‐wide SNP analysis clearly distinguished the Belarusian Red cattle from other European cattle breeds	10
An association study on imputed whole‐genome resequencing from high‐throughput sequencing data for body traits in crossbred pigs	10
Comparison of growth performance and biochemical components between parent and hybrid offspring in the oriental river prawn, Macrobrachium nipponense	10
Identification of candidate genes associated with slaughter traits in F2 chicken population using genome‐wide association study	9
Comparative analysis of swine leukocyte antigen gene diversity in European farmed pigs	9
The de novo assembly of a European wild boar genome revealed unique patterns of chromosomal structural variations and segmental duplications	9
Deletion in KRT75L4 linked to frizzle feather in Xiushui Yellow Chickens	9
Comparative genome‐wide methylation analysis of longissimus dorsi muscles in Yorkshire and Wannanhua pigs	9
Targeted sequencing reveals candidate causal variants for dairy bull subfertility	9
Genome scanning reveals novel candidate genes for vertebral and teat number in the Beijing Black Pig	9
Comparison of morphology and genetic diversity between broodstock and hybrid offspring of oriental river prawn, Macrobrachium nipponense based on morphological analysis and SNP markers	9
Exploiting within‐breed variability in the autochthonous Reggiana breed identified several candidate genes affecting pigmentation‐related traits, stature and udder defects in cattle	9
Genome‐wide scan for runs of homozygosity in Asian wild boars and Anqing six‐end‐white pigs	9
Genome‐wide association study and inbreeding depression on body size traits in Qira black sheep (Ovis aries)	9
Non‐frameshift deletion on MITF is associated with a novel splashed white spotting pattern in horses (Equus caballus)	9
Positive selection signatures in Anqing six‐end‐white pig population based on reduced‐representation genome sequencing data	8
Comparison of lipid metabolism between broodstock and hybrid offspring in the hepatopancreas of juvenile shrimp (Macrobrachium nipponense): Response to chronic ammonia stress	8
Genome‐wide re‐sequencing data reveals the genetic diversity and population structure of Wenchang chicken in China	8
Genome‐wide association study revealed ABCD4 on SSC7 and GREB1L and MIB1 on SSC6 as crucial candidate genes for rib number i	8
Screening and detection of chromosomal copy number alterations in the domestic horse using SNP‐array genotyping data	8
An analysis of skin thickness in the Dezhou donkey population and identification of candidate genes by RNA‐seq	8
Genomic characteristics of four different geese populations in China	8
Integrating genome‐wide association study with RNA‐seq revealed DBI as a good candidate gene for intramuscular fat content in Beijing black pigs	8
Genetics of canine myxomatous mitral valve disease	8
Genetic architectures and selection signatures of body height in Chinese indigenous donkeys revealed by next‐generation sequencing	8
Identification of processed pseudogenes in the genome of Thoroughbred horses: Possibility of gene‐doping detection considering the presence of pseudogenes	8
Recognition and segmentation of individual pigs based on Swin Transformer	8
Whole genome survey and genetic markers development of crocodile flathead Cociella crocodilus	7
Genomic selection for meat quality traits in Pekin duck	7
Genome‐wide association study and pathway analysis for carcass fatness in Nellore cattle measured by ultrasound	7
All‐male production by marker‐assisted selection for sex determining loci of admixed Oreochromis niloticus and Oreochromis aureus stocks	7
Fatty acid desaturase 2 affects the milk‐production traits in Chinese Holsteins	7
Genome‐wide association study reveals new QTL and functional candidate genes for the number of ribs and carcass length in pigs	7
A natural knockout of the MYO7A gene leads to pre‐weaning mortality in pigs	7
Broad maternal geographic origin of domestic sheep in Anatolia and the Zagros	7
Fragile Foal Syndrome (PLOD1 c.2032G>A) occurs across diverse horse populations	7
Identification of quantitative trait loci associated with calmness and gentleness in honey bees using whole‐genome sequences	7
The equine graying with age mutation of the STX17 gene: A copy number study using droplet digital PCR reveals a new pattern	7
Characterization of telomere length in Agerolese cattle breed, correlating blood and milk samples	7
Thoroughbred stallion fertility is significantly associated with FKBP6 genotype but not with inbreeding or the contribution of a leading sire	7

Investigating the population structure and genetic diversity of Arabian horses in Oman using SNP markers	7
The effect of high‐density genotypic data and different methods on joint genomic prediction: A case study in large white pigs	7
FGF5 missense mutation is associated with dromedary hair length variation	7
Assessment of copy number variants in three Brazilian locally adapted cattle breeds using whole‐genome re‐sequencing data	7
Genetic variation in chicken interferon signalling pathway genes in research lines showing differential viral resistance	7
Genomic regions underlying positive selection in local, Alpine cattle breeds	7
Simulated validation of intron‐less transgene detection using DELLY for gene‐doping control in horse sports	6
De novo assembly and annotation of the North American bison (Bison bison) reference genome and subsequent variant identification	6
Detecting the footprint of selection on the genomes of Murciano‐Granadina goats	6
Understanding the role of myoglobin content in Iberian pigs fattened in an extensive system through analysis of the transcriptome profile	6
Preliminary identification and analysis of differential RNA editing between higher and lower backfat thickness pigs using DNA‐seq and RNA‐seq data	6
Rabbits – their domestication and molecular genetics of hair coat development and quality	6
Identification of suitable reference genes for normalization of quantitative real‐time PCR‐based gene expression in chicken (Gallus gallus)	6
A large‐scale genome‐wide association analysis reveals QTL and candidate genes for intramuscular fat content in Duroc pigs	6
Forensic DNA phenotyping: Canis familiaris breed classification and skeletal phenotype prediction using functionally significant skeletal SNPs and indels	6
Concordance rate in cattle and sheep between genotypes differing in Illumina GenCall quality score	6
Prospects of toll‐like receptors in dairy cattle breeding	6
Cross‐species conservation of a transposase‐linked element enables genetic sexing of commercial populations of Russian sturgeon (Acipenser gueldenstaedtii)	6
A study using single‐locus and multi‐locus genome‐wide association study to identify genes associated with teat number in Hu sheep	6
Siberian cats help in solving part of the mystery surrounding golden cats	6
Association of inbreeding and regional equine leucocyte antigen homozygosity with the prevalence of insect bite hypersensitivity in Old Kladruber horse	6
Standardization of a SNP panel for parentage verification and identification in the domestic cat (Felis silvestris catus)	6
Combining genome‐wide association study based on low‐coverage whole genome sequencing and transcriptome analysis to reveal the key candidate genes affecting meat color in pigs	6
Genome‐wide analysis suggests multiple domestication events of Chinese local pigs	6
RNA sequencing analysis of the longissimus dorsi to identify candidate genes underlying the intramuscular fat content in Anqing Six‐end‐white pigs	6
Combined approaches identify known and novel genes associated with sheep litter size and non‐seasonal breeding	6
A PNPLA8 frameshift variant in Australian shepherd dogs with hereditary ataxia	5
Integrative analysis of circRNAs from Yangtze River Delta white goat neck skin tissue by high‐throughput sequencing (circRNA‐seq)	5
Characterisation of eight cattle with Swyer syndrome by whole‐genome sequencing	5
Identification of a missense variant in the porcine AGPAT gene family associated with intramuscular fat content through whole‐genome sequencing	5
Integrated analysis of whole genome and transcriptome sequencing reveals a frameshift mutation associated with recessive embryonic lethality in Holstein cattle	5
Genome‐wide association study of resistance/susceptibility to infectious bovine keratoconjunctivitis in Brazilian Hereford cattle	5
QTL analysis for early growth in an intercross between native Japanese Nagoya and White Plymouth Rock chicken breeds using RAD sequencing‐based SNP markers	5
Genetic polymorphisms within the ETAA1 gene associated with growth traits in Chinese sheep breeds	5
Genome‐wide re‐sequencing reveals population structure and genetic diversity of Bohai Black cattle	5
Genome‐wide association studies demonstrate the genes associated with perimysial thickness in ducks	5
Comparison of major histocompatibility complex‐B variability in Sri Lankan indigenous chickens with five global chicken populations using MHC‐B SNP panel	5
Identification and characterisation of mitochondrial sequences integrated into the ovine nuclear genome	5
A novel TYRP1 mutation associated with brown coat color in Siberian huskies	5
Gene mapping reveals the association between tyrosine protein kinase Abl1 and the silk yield of Bombyxmori	5
Analysis of pedigree data and whole‐genome sequences in 12 cattle breeds reveals extremely low within‐breed Y‐chromosome diversity	5
A novel homozygous nonsense mutation in ITGB4 gene causes epidermolysis bullosa in Mouton Vendéen sheep	5
Genomic analysis of 10 years of artificial selection in community‐based breeding programs in two Ethiopian indigenous sheep breeds	5
Whole genome sequencing identifies a homozygous nonsense mutation in the JPH2 gene in Shih Tzu dogs with progressive retinal atrophy	5
Resequencing the Yaroslavl cattle genomes reveals signatures of selection and a rare haplotype on BTA28 likely to be related to breed phenotypes	5
Weighted genomic prediction for growth and carcass‐related traits in Nelore cattle	5
A deletion in the MC1R gene alters coat color in Guzerat cattle	5
Comparison of immune defense and antioxidant capacity between broodstock and hybrid offspring of juvenile shrimp (Macrobrachium nipponense): Response to acute ammonia stress	5
Comparative analyses of copy number variations between swamp buffaloes and river buffaloes	5
Evaluation of truncating variants in the LCORL gene in relation to body size of goats from Switzerland	5
Shadow coat colour in American mink associated with a missense mutation in the KIT gene	5
Improving the resolution of canine genome‐wide association studies using genotype imputation: A study of two breeds	5
Integrated microRNA–mRNA analysis reveals the roles of microRNAs in the muscle fat metabolism of Yanbian cattle	5
A de novo missense mutation in KIT is responsible for dominant white spotting phenotype in a Standardbred horse	5
Potential functional variants in AHR signaling pathways are associated with age at puberty in swine	5
Genetic basis investigation of wattle phenotype in goat using genome‐wide sequence data	4
KRT5 missense variant in a Cardigan Welsh Corgi with epidermolysis bullosa simplex	4
Two quantitative trait loci are associated with recapping of Varroa destructor‐infested brood cells in Apis mellifera mellifera	4
Golden cats: The story goes on	4
Inbreeding depression and durability in the North American Thoroughbred horse	4
Roan, ticked and clear coat patterns in the canine are associated with three haplotypes near usherin on CFA38	4
Genome‐wide epistatic interactions of litter size at birth in Chinese indigenous pigs	4
A whole genome scan reveals distinct features of selection in Zhaotong cattle of Yunnan province	4
Insights into the influence of diet and genetics on feed efficiency and meat production in sheep	4
A de novo variant in the bovine ADAMTSL4 gene in an Original Braunvieh calf with congenital cataract	4
Advances in the discovery of genetic elements underlying longissimus dorsi muscle growth and development in the pig	4
A genetic investigation of equine recurrent uveitis in the Icelandic horse breed	4
Genetic diversity and selection signatures of four indigenous pig breeds from eastern China	4
Canine transmissible venereal tumor – From general to molecular characteristics: A review	4
Molecular sex identification in Japanese quail (Coturnix japonica)	4
Absence of known feline MYH7 and MYBPC3 variants in a diverse cohort of cats with hypertrophic cardiomyopathy	4
Identification of critical lncRNAs for milk fat metabolism in dairy cows using WGCNA and the construction of a ceRNAs network	4
Candidate signatures of positive selection for environmental adaptation in indigenous African cattle: A review	4
Preliminary population genomic study on the sandfish Holothuria (Metriatyla) scabra	4
Roan coat color in livestock	4
Copy number variation of the SRY gene showed an association with disorders of sex development in Yorkshire Terrier dogs	4
Inheritance of the SLICK1 allele of PRLR in cattle	4
Altered fibrinogen level and fibrin clot structure in myostatin homozygous mutant pig	4
Development of a high‐resolution typing method for SLA‐3, swine MHC class I antigen 3	4
Bos taurus haplotypes segregating in Nellore (Bos indicus) cattle	4

Genome‐wide population structure, homozygosity, and heterozygosity patterns of Nero Siciliano pig in the framework of Italian and cosmopolitan breeds	4
Polymorphisms in canine immunoglobulin heavy chain gene cluster: a double‐edged sword for diabetes mellitus in the dog	3
A novel missense variant in endothelin‐2 (EDN2) causes a growth and respiratory lethal syndrome in bovine	3
Opportunity to improve livestock traits using 3D genomics	3
Estimates of genomic inbreeding and identification of candidate regions in Beijing‐You chicken populations	3
Copy number variation association studies for sheep tail‐relevant traits in Hulunbuir sheep	3
Analysis of genetic diversity and selection signals in Chaling cattle of southern China using whole‐genome scan	3
Genetic variations for egg internal quality of ducks revealed by genome‐wide association study	3
Integration analyses of structural variations and differential gene expression associated with beef fatty acid profile in Nellore cattle	3
A missense mutation in the FZD7 gene is associated with dilution of the red areas of the coat in Montbéliarde cattle	3
Integration of GWAS and eGWAS to screen candidate genes underlying green head traits in male ducks	3
Optimizing genomic prediction using low‐density marker panels for streptococcosis resistance in red tilapia (Oreochromis spp.)	3
A frameshift deletion in the GDF9 gene in Icelandic Loa prolific sheep	3
A comparative whole genome sequencing analysis identified a candidate locus for lack of operculum in cultivated gilthead seabream (Sparus aurata)	3
Genome‐wide single nucleotide polymorphism array and whole‐genome sequencing reveal the inbreeding progression of Banna minipig inbred line	3
Evaluation of six machine learning classification algorithms in pig breed identification usingSNPsarray data	3
Identification of a large dataset of SNPs in hair‐fin anchovy (Setipinna tenuifilis) based on RAD‐seq	3
Identification of imprinted genes in the skeletal muscle of newborn piglets by high‐throughput sequencing	3
Alternative polyadenylation events differ dramatically between Tongcheng and Large White pigs in response to PRRSV infection	3
Mitochondrial fission factor (MFF) frameshift variant in Bullmastiffs with mitochondrial fission encephalopathy	3
Golden cats: A never‐ending story!	3
The TNNT2:c.95‐108G>A variant is common in Maine Coons and shows no association with hypertrophic cardiomyopathy	3
Full‐length transcriptome sequencing reveals extreme incomplete annotation of the goat genome	3
Study on the concordance between different SNP‐genotyping platforms in sheep	3
A genome‐wide association study for eumelanin pigmentation in chicken plumage using a computer vision approach	3
Yak miR‐2285o‐3p attenuates hypoxia‐induced apoptosis by targeting caspase‐3	3
Red and blond Mangalitza pigs display a signature of divergent directional selection in theSLC45A2gene	3
Identification of candidate genes related to highland adaptation from multiple Chinese local chicken breeds by whole genome sequencing analysis	3
Characterization of experimental cattle populations from Argentina with a low‐density SNP genotyping panel	3
Computer vision system using deep learning to predict rib and loin yield in the fish Colossoma macropomum	3
Mitochondrial DNA variation of Nigerian dromedary camel (Camelus dromedarius)	3
Population structure and genomic footprints of selection in five major Iranian horse breeds	3
Exclusion of previously described variant in LTBP2 for primary glaucoma in Australian Burmese cats	3
Novel insight into linkage disequilibrium and additive effect of GBP1 and GBP5 SNP haplotypes associated with porcine reproductive and respiratory syndrome virus susceptibility in Korean	3
A de novo 2.3 kb structural variant in MITF explains a novel splashed white phenotype in a Thoroughbred family	3
Efficiency of genotyping by sequencing in inferring genomic relatedness and molecular insights into fat tail selection in Tunisian sheep	3
A deletion variant within the FGF5 gene in goats is associated with gene expression levels and cashmere growth	3
Associated regions for multiple birth in Brown Swiss and Original Braunvieh cattle on chromosomes 15 and 11	3
Genome‐wide association study for carcass traits in Hanwoo cattle using additional relatives' information of non‐genotyped animals	3
HCM‐associated ALMS1 variant: Allele drop‐out and frequency in Italian Sphynx cats	3
A mutation modulating DDX3Y gene expression cosegregates with the major Y‐chromosomal haplogroups and with testis size in Hu sheep	3
Modeling microRNA‐driven post‐transcriptional regulation using exon–intron split analysis in pigs	3
Integrative genomics analysis highlights functionally relevant genes for equine behaviour	3
A 6.7 kb deletion in the COL2A1 gene in a Holstein calf with achondrogenesis type II and perosomus elumbis	3
Two single nucleotide variants in the miR‐23a promoter affect granulosa cell apoptosis	2
Evidence of rare misassemblies in the bovine reference genome revealed by population genetic metrics	2
RNAseq reveals modulation of genes involved in fatty acid biosynthesis in chicken liver according to genetic background, sex, and diet	2
Heritability of insidious uveitis in Appaloosa horses	2
Genome‐wide association study of growth traits and validation of key mutations (MSTN c.C861T) associated with the muscle mass of meat pigeons	2
Unique genetic signature and selection footprints in Dutch population of German Longhaired Pointer dogs	2
Genetic diversity patterns in farmed rainbow trout (Oncorhynchus mykiss) populations using genome‐wideSNPand haplotype data	2
Whole‐genome resequencing reveals candidate genes associated with milk production trait in Guanzhong dairy goats	2
Genome‐wide interaction study reveals epistatic interactions for beef lipid‐related traits in Nellore cattle	2
Polymorphism of coupled indels in porcine TNNC2 alters its transcript splicing and is associated with meat quality traits	2
Heterozygous KRT10 missense variant in a Chihuahua with severe epidermolytic ichthyosis	2
A meta‐analysis of mRNA expression profiling studies in sheep with different FecB genotypes	2
Characterisation and comparison of immune response mechanisms in an indigenous and a commercial pig breed after classical swine fever vaccination	2
Population structure of 3907 worldwide pigs and the introgression of Chinese indigenous pigs by European pigs	2
Review: Wildlife forensic genetics—Biological evidence, DNA markers, analytical approaches, and challenges	2
A de novo start‐lost variant in ANKRD28 in a Holstein calf with dwarfism	2
The KIT:c.376G>A variant in German and Swiss alpacas (Vicugna pacos) with different coat colors	2
Evaluation of imputation possibility from low‐density SNP panel in composite Vrindavani cattle	2
MHC class I‐α population differentiation in a commercial fish, the European sea bass (Dicentrarchus labrax)	2
A large deletion in the Plasminogen gene is associated with ligneous membranitis in a Maltese dog	2
Significant association of mutations close to LCORL gene with growth performance in Zhedong white geese (Anser cygnoides)	2
Genome‐wide screening for selection signatures in native and cosmopolitan cattle breeds reared in Türkiye	2
Identification of two new recessive MC1R alleles in red‐coloured Evolèner cattle and other breeds	2
Genetic evaluation of small ruminant lentivirus susceptibility in Valais blacknose sheep	2
Integrated analysis of differently expressed microRNAs and mRNAs at different postnatal stages reveals intramuscular fat deposition regulation in goats (Capra hircus)	2
Relevance of pharmacogenetics and pharmacogenomics in veterinary clinical practice: A review	2
Genome‐wide association study reveals a genomic region on SSC7 simultaneously associated with backfat thickness, skin thickness and carcass length in a Large White × Tongcheng advanced gene	2
Identification of genes associated with feather color in Liancheng white duck using FST analysis	2
Sequence variants of the canine melanocyte inducing transcription factor (MITF) locus reveal a common MITF‐A processed pseudogene	2
Non‐contact detection method of pregnant sows backfat thickness based on two‐dimensional images	2
Genome‐wide association study for antibody response to Mycobacterium avium ssp. paratubeculosis in goats	2
Risk factors for, and genetic association with, intestinal atresia in dairy calves	2
Smartphone‐based digital phenotyping for genome‐wide association study of intramuscular fat traits in longissimus dorsi muscle of pigs	2
Markers with low GenTrain scores can generate spurious signals in genome‐wide scans for transmission ratio distortion	2
Increased heterozygosity in low‐pass sequencing data allows identification of blood chimeras in cattle	2
SDR9C7 missense variant in a Chihuahua with non‐epidermolytic ichthyosis	2
Long‐read sequencing assays designed to detect potential gene editing events in the myostatin gene revealed distinct haplotype signatures in the Thoroughbred horse population	2
The MYH3 gene variant (g.‐1805_‐1810, ACGT) affects endophenotypes of myoglobin oxidation–reduction states in porcine muscles	2
Genome‐wide analyses based on a novel donkey 40K liquid chip reveal the gene responsible for coat color diversity in Chinese Dezhou donkey	2
De novo assembly of a wild swan goose (Anser cygnoides) genome	2
Isolated cryptorchidism in dogs is not associated with polymorphisms of the INSL3 and AR candidate genes	2
Genome‐wide DNA methylation and transcription analysis in tongue and biceps femoris muscles of cloned pigs with macroglossia	2
Comparison of genomic prediction methods for residual feed intake in broilers	2
Melanocortin‐4 receptor and proopiomelanocortin: Candidate genes for obesity in domestic shorthair cats	2
A high‐density genetic linkage map for Chinese perch (Siniperca chuatsi) using 2.3K genotyping‐by‐sequencing SNPs	2
Development of a 19‐plex short tandem repeat typing system for individual identification and parentage testing of horses (Equus caballus)	2
SPAG6 c.900 T>C affects boar semen quality and blood–testis barrier function by creating a new splice acceptor site	2
Genome‐wide association study identified the candidate genes associated with angel wing trait in Pekin duck	2