Animal Genetics

Article	Citations
Integrative analysis of circRNAs from Yangtze River Delta white goat neck skin tissue by high‐throughput sequencing (circRNA‐seq)	43
Maternal genetic diversity of ancient goats in Finland and Estonia and comparison with extant northern European goat breeds	29
Competing endogenous RNA network construction based on long non‐coding RNAs, microRNAs, and mRNAs related to fat deposition in Songliao black swine	29
Pleiotropic architectures of porcine immune and growth trait pairs revealed by a self‐product‐based transcriptome method	25
Comprehensive genomic analysis and selection signature detection in endangered Beigang pigs using whole‐genome sequencing data	24
Several variants on chromosome 10 are associated with coarse hair diameter in Dazu black goats (Capra hircus)	19
Genome‐wide association studies on body weight in Loumen ducks	18
Genome‐wide association study reveals candidate genes for pollution excreta traits in pigs	17
Characterisation and comparison of immune response mechanisms in an indigenous and a commercial pig breed after classical swine fever vaccination	15
A conserved haplotype in Wagyu cattle contains RAB4A whose encoded protein regulates glucose trafficking in muscle and fat cells	15
Equine STX17 intronic triplication confirmed by droplet digital PCR analysis of its breakpoints	14
Development of a high‐throughput screening method for the detection of 188 pathogenic variants and its application in Mishima cattle	14
Understanding the role of myoglobin content in Iberian pigs fattened in an extensive system through analysis of the transcriptome profile	14
Is a heterozygous missense variant in SGSH the cause of a syndromic form of congenital amastia in an Original Braunvieh calf?	13
The first genome‐wide association study concerning idiopathic epilepsy in Petit Basset Griffon Vendeen	13
Trends towards revealing the genetic architecture of sheep tail patterning: Promising genes and investigatory pathways	12
Genome‐wide association study of three litter traits in Yorkshire pigs	12
Roan coat color in livestock	12
Development of a 19‐plex short tandem repeat typing system for individual identification and parentage testing of horses (Equus caballus)	11
The role of genetic variability of the host on the resistance to Neospora caninum infection in cattle	11
Whole‐genome sequencing of alpaca revealed variants in KIT gene potentially associated with the white coat phenotype	11
A genetic investigation of equine recurrent uveitis in the Icelandic horse breed	11
Heterozygous KRT10 missense variant in a Chihuahua with severe epidermolytic ichthyosis	10
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Genome‐wide DNA methylation and transcription analysis in tongue and biceps femoris muscles of cloned pigs with macroglossia	10

Analysis of genetic variants in protein‐coding genes of Aoluguya reindeer based on the whole‐genome data	10
Genetic diversity and selection signatures of four indigenous pig breeds from eastern China	10
Transcriptome annotation of 17 porcine tissues using nanopore sequencing technology	10
Multiomic meta‐analysis suggests a correlation between steroid hormone‐related genes and litter size in goats	9
Issue Information	9
Identification of potential biomarkers associated with meat tenderness in Hanwoo (Korean cattle): An expression quantitative trait loci analysis	9
HCM‐associated ALMS1 variant: Allele drop‐out and frequency in Italian Sphynx cats	9
Origin and population structure of Brazilian hair sheep breeds	9
Genome‐wide association study using a single‐step approach for teat number in Duroc, Landrace and Yorkshire pigs in Korea	9
Issue Information	9
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Concordance rate in cattle and sheep between genotypes differing in Illumina GenCall quality score	9
Using genetics to trace the ancestry and ‘breed‐type’ of rescued horses	9
Genome‐wide association study reveals a genomic region on SSC7 simultaneously associated with backfat thickness, skin thickness and carcass length in a Large White × Tongcheng advanced gene	8
The landscape of allelic expression and DNA methylation at the bovine SGCE/PEG10 locus	8
Naturally occurring genetic diseases caused by de novo variants in domestic animals	8
Issue Information	8
Standardization of a SNP panel for parentage verification and identification in the domestic cat (Felis silvestris catus)	8
A panel of tetranucleotide STR markers as an alternative approach to forensic DNA identification of wolf and dog	8
Genome‐wide analysis suggests multiple domestication events of Chinese local pigs	8
The 4 bp deletion mutation in HOXD1 gene determines the polycerate trait in Chinese Sishui fur sheep	8
Optimizing genomic prediction using low‐density marker panels for streptococcosis resistance in red tilapia (Oreochromis spp.)	8
A novel QTL region for pH and meat color in Duroc pigs	8
Melanocortin‐4 receptor and proopiomelanocortin: Candidate genes for obesity in domestic shorthair cats	8
A 3‐bp deletion in the SLC45A2 gene is associated with loss of fleece pigmentation in black‐fleeced Suffolk sheep	7
Detection of selection signatures in South African Mutton Merino sheep using whole‐genome sequencing data	7
A structural variant at ASIP associated with the darkness of hair coat is found in multiple zebu cattle populations	7
Whole‐genome resequencing reveals diversity and selective signals in the Wuxue goat	7
Mutation c.−379 C>T in DGAT1 affects intramyocellular lipid content by altering MYOD1 binding affinity	7
Two quantitative trait loci are associated with recapping of Varroa destructor‐infested brood cells in Apis mellifera mellifera	7
Development and validation of SNP markers for giant panda using a kompetitive allele specific PCR approach	7
Golden cats: The story goes on	7
Identification and characterisation of mitochondrial sequences integrated into the ovine nuclear genome	7
Analysis of SLICK allele in African taurine and Zebu cattle breeds	7
Genetic basis of phenotypic convergence in pig terminal sires using pathway‐based selection signature detection methods	7
Candidate causative variant for xanthinuria in a Domestic Shorthair cat	7
Integrated analysis of differently expressed microRNAs and mRNAs at different postnatal stages reveals intramuscular fat deposition regulation in goats (Capra hircus)	7
Comparison of immune defense and antioxidant capacity between broodstock and hybrid offspring of juvenile shrimp (Macrobrachium nipponense): Response to acute ammonia stress	7
Whole‐genome resequencing reveals candidate genes associated with milk production trait in Guanzhong dairy goats	7
An association study on imputed whole‐genome resequencing from high‐throughput sequencing data for body traits in crossbred pigs	7
A metagenomic survey of the fecal microbiome of the African savanna elephant (Loxodonta africana)	7
A new Finnish flavor of feline coat coloration, “salmiak,” is associated with a 95‐kb deletion downstream of the KIT gene	7
KRT5 in‐frame deletion in a family of German Shepherd dogs with split paw pad disease resembling localized epidermolysis bullosa simplex in human patients	7
Parsing the microRNA genetics basis regulating skeletal muscle fiber types and meat quality traits in pigs	6
A missense mutation in the tyrosinase gene explains acromelanism in domesticated canaries	6
Issue Information	6
Characterisation of eight cattle with Swyer syndrome by whole‐genome sequencing	6
Sequence variants of the canine melanocyte inducing transcription factor (MITF) locus reveal a common MITF‐A processed pseudogene	6
Identification of KIT gene transcript variants in white spotted river buffalo (Bubalus bubalis)	6
A missense mutation in the FZD7 gene is associated with dilution of the red areas of the coat in Montbéliarde cattle	6

Intragenic duplication disrupting the reading frame of MFSD8 in Small Swiss Hounds with neuronal ceroid lipofuscinosis	6
Genome‐wide analyses based on a novel donkey 40K liquid chip reveal the gene responsible for coat color diversity in Chinese Dezhou donkey	6
Comparison of morphology and genetic diversity between broodstock and hybrid offspring of oriental river prawn, Macrobrachium nipponense based on morphological analysis and SNP markers	6
Genome‐wide study suggests inheritance of personality traits in Toy Poodles and Miniature Dachshunds	6
Copy number variation of the SRY gene showed an association with disorders of sex development in Yorkshire Terrier dogs	6
Genomic selection for meat quality traits in Pekin duck	6
Associated regions for multiple birth in Brown Swiss and Original Braunvieh cattle on chromosomes 15 and 11	6
A genome‐wide association study for eumelanin pigmentation in chicken plumage using a computer vision approach	6
Genome‐wide association study of copy number variations with shank traits in a F2 crossbred chicken population	6
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Genomic characterization of dryland adaptation in endangered Anxi cattle in China	5
Frequency of RPGRIP1 and MAP9 genetic modifiers of canine progressive retinal atrophy, in 132 breeds of dog	5
Advances in the discovery of genetic elements underlying longissimus dorsi muscle growth and development in the pig	5
A large‐scale genome‐wide association analysis reveals QTL and candidate genes for intramuscular fat content in Duroc pigs	5
Heterozygous ASPRV1 frameshift variant in a Pembroke Welsh Corgi with ichthyosis	5
Comparative analysis of genomic inbreeding parameters and runs of homozygosity islands in several fancy and meat rabbit breeds	5
Full‐length transcriptome sequencing reveals extreme incomplete annotation of the goat genome	5
A genome‐wide association study reveals a quantitative trait locus for calf mortality on chromosome 9 in Japanese Black cattle	5
Broad maternal geographic origin of domestic sheep in Anatolia and the Zagros	5
A frameshift variant in the EXT1 gene in a feline leukemia virus‐negative cat with osteochondromatosis	5
Long‐read sequencing assays designed to detect potential gene editing events in the myostatin gene revealed distinct haplotype signatures in the Thoroughbred horse population	5
De novo assembly and annotation of the North American bison (Bison bison) reference genome and subsequent variant identification	5
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Weighted genomic prediction for growth and carcass‐related traits in Nelore cattle	5
Genome‐wide association study revealed ABCD4 on SSC7 and GREB1L and MIB1 on SSC6 as crucial candidate genes for rib number i	5
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Degree of leukochimerism with calf age in Angus‐crossbred twin sets	5
A deletion in the MC1R gene alters coat color in Guzerat cattle	5
Identification of polymorphic markers for germplasm conservation of three precious Chinese palace goldfish using whole‐genome sequencing	5
Identification of a novel QTL for lean meat percentage using imputed genotypes	5
Unique genetic signature and selection footprints in Dutch population of German Longhaired Pointer dogs	5
Issue Information	5
Integrating genome‐wide association study with RNA‐seq revealed DBI as a good candidate gene for intramuscular fat content in Beijing black pigs	5
Markers with low GenTrain scores can generate spurious signals in genome‐wide scans for transmission ratio distortion	5
Canine reference genome accuracy impacts variant calling: Lessons learned from investigating embryonic lethal variants	5
The effect of high‐density genotypic data and different methods on joint genomic prediction: A case study in large white pigs	5
New insights into genetics underlying of plumage color	5
Study on the origin of the Baise horse based on whole‐genome resequencing	5
Combined approaches identify known and novel genes associated with sheep litter size and non‐seasonal breeding	4
Non‐frameshift deletion on MITF is associated with a novel splashed white spotting pattern in horses (Equus caballus)	4
A large deletion in the Plasminogen gene is associated with ligneous membranitis in a Maltese dog	4
Issue Information	4
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Issue Information	4
Lymphoid enhancer binding factor 1 is associated with nose color in Yunong black pigs	4
Assessing genomic diversity and signatures of selection in Qingyuan Wapiti	4
DYRK1B haploinsufficiency in a Holstein cattle with epilepsy	4
Golden cats: A never‐ending story!	4
Comparison of major histocompatibility complex‐B variability in Sri Lankan indigenous chickens with five global chicken populations using MHC‐B SNP panel	4
Deletion in KRT75L4 linked to frizzle feather in Xiushui Yellow Chickens	4
Evaluation of the value of genetic testing for cystinuria in the Danish population of English bulldogs	4
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Genome‐wide screening for selection signatures in native and cosmopolitan cattle breeds reared in Türkiye	4
A purebred South American breed showing high effective population size and independent breed ancestry: The Chilean Terrier	4
Heritability of insidious uveitis in Appaloosa horses	4
Genome‐wide association studies for the number of piglets born alive and dead in Dongliao black pigs	4
Unexpected recombination at the polled locus in a horned Holstein calf from the mating of a homozygous polled sire and a heterozygous polled cow	4
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Efficiency of genotyping by sequencing in inferring genomic relatedness and molecular insights into fat tail selection in Tunisian sheep	4
Genetic diversity of purebred Charollais sheep in China on the basis of 50k SNP genotypes	4
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Landmarks in the history of selective sweeps	4
KRT5 missense variant in a Cardigan Welsh Corgi with epidermolysis bullosa simplex	4
The previously reported LRP4 c.4940C>T variant is not associated with syndactyly in cattle	3
Topologically associating domains in the POLLED region are the same for Angus‐ and Brahman‐specific Hi‐C reads from F1 hybrid fetal tissue	3
Corrigendum	3
A de novo variant in the bovine ADAMTSL4 gene in an Original Braunvieh calf with congenital cataract	3
Genetic Eye Diseases in Animals: A Selected Review of Recent Advances	3
Investigation of the effect of missense mutations in AHR and DNAH11 on feed conversion ratio and average daily residual feed intake in Duroc, Landrace and Yorkshire pigs	3
Issue Information	3
A PNPLA8 frameshift variant in Australian shepherd dogs with hereditary ataxia	3
Genome‐wide re‐sequencing data reveals the genetic diversity and population structure of Wenchang chicken in China	3
Cross‐species conservation of a transposase‐linked element enables genetic sexing of commercial populations of Russian sturgeon (Acipenser gueldenstaedtii)	3
Trisomy 26 in a Holstein calf with disorders of sex development	3
Copy number variation association studies for sheep tail‐relevant traits in Hulunbuir sheep	3
Effect of selection genotype on immune response toBrucella abortus RB51in Holstein cattle	3
Genome scanning reveals novel candidate genes for vertebral and teat number in the Beijing Black Pig	3
X monosomy in a British shorthair cat with skeletal abnormalities and behavioral problems	3

Whole genome survey and genetic markers development of crocodile flathead Cociella crocodilus	3
Exonisation of an intronic L1 element in the dystrophin gene associated with X‐linked muscular dystrophy in a Border Collie dog	3
Genetic variations for egg internal quality of ducks revealed by genome‐wide association study	3
The genomic landscape of short tandem repeats in cattle	3
Construction of a high‐density linkage map and QTL detection for growth traits in South African abalone (Haliotis midae)	3
RNAseq reveals modulation of genes involved in fatty acid biosynthesis in chicken liver according to genetic background, sex, and diet	3
A further survey of the quantitative trait loci affecting swine body size and carcass traits in five related pig populations	3
RNA sequencing analysis of the longissimus dorsi to identify candidate genes underlying the intramuscular fat content in Anqing Six‐end‐white pigs	3
MHC class I‐α population differentiation in a commercial fish, the European sea bass (Dicentrarchus labrax)	3
Increased heterozygosity in low‐pass sequencing data allows identification of blood chimeras in cattle	3
Alternative polyadenylation events differ dramatically between Tongcheng and Large White pigs in response to PRRSV infection	3
Evidence of rare misassemblies in the bovine reference genome revealed by population genetic metrics	3
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Opportunity to improve livestock traits using 3D genomics	3
STK36 splice site variant in an Australian Shepherd dog with primary ciliary dyskinesia	3
Issue Information	3
Genome‐wide association studies demonstrate the genes associated with perimysial thickness in ducks	3
Genome‐wide re‐sequencing reveals regulatory genes and variants involved in the regulation of intermittent fertilization intensity in Wenchang chickens	3
Novel insight into linkage disequilibrium and additive effect of GBP1 and GBP5 SNP haplotypes associated with porcine reproductive and respiratory syndrome virus susceptibility in Korean	3
Evaluation of imputation possibility from low‐density SNP panel in composite Vrindavani cattle	3
Siberian cats help in solving part of the mystery surrounding golden cats	3
Preliminary population genomic study on the sandfish Holothuria (Metriatyla) scabra	3
Recognition and segmentation of individual pigs based on Swin Transformer	3
Inference of ancestral alleles in the pig reference genome	3
The role of G protein‐coupled receptors and their ligands in animal domestication	3
Issue Information	2
A de novo start‐lost variant in ANKRD28 in a Holstein calf with dwarfism	2
The KIT:c.376G>A variant in German and Swiss alpacas (Vicugna pacos) with different coat colors	2
Residual network improves the prediction accuracy of genomic selection	2
Computer vision system using deep learning to predict rib and loin yield in the fish Colossoma macropomum	2
Candidate signatures of positive selection for environmental adaptation in indigenous African cattle: A review	2
Polymorphisms in canine immunoglobulin heavy chain gene cluster: a double‐edged sword for diabetes mellitus in the dog	2
Genome‐wide association analysis revealed new QTL and candidate genes affecting the teat number in Dutch Large White pigs	2
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Hypothalamus–pituitary axis transcriptomic modification dependent on growth rate in geese (Anser anser domesticus)	2
Integrative genomics analysis highlights functionally relevant genes for equine behaviour	2
Potential functional variants in AHR signaling pathways are associated with age at puberty in swine	2
Issue Information	2
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Genome‐wide re‐sequencing reveals population structure and genetic diversity of Bohai Black cattle	2
Genome‐wide association study identified the candidate genes associated with angel wing trait in Pekin duck	2
Identification of a large dataset of SNPs in hair‐fin anchovy (Setipinna tenuifilis) based on RAD‐seq	2
Risk factors for, and genetic association with, intestinal atresia in dairy calves	2
Investigating the population structure and genetic diversity of Arabian horses in Oman using SNP markers	2
Population structure and genomic footprints of selection in five major Iranian horse breeds	2
The c.126C>A(p.(Cys42Ter)) SLC7A10 nonsense variant is a candidate causative variant for paradoxical pseudomyotonia in English Cocker and Springer Spaniels	2
Differential expression of ASIP transcripts reveals genetic mechanism underpinning black‐tail independence from body plumage in yellow‐bodied chickens	2
Characterization and functional analysis of lncRNA2690 in regulating the growth cycle of the hair follicle in rabbits	2
Single and longitudinal genome‐wide association studies for dairy traits available in goats with three recorded lactations	2
Issue Information	2
Issue Information	2
Comparison of long non‐coding RNAs in adipose and muscle tissues between seven indigenous Chinese and the Yorkshire pig breeds	2
Genetic basis investigation of wattle phenotype in goat using genome‐wide sequence data	2
Two single nucleotide variants in the miR‐23a promoter affect granulosa cell apoptosis	2
A mutation modulating DDX3Y gene expression cosegregates with the major Y‐chromosomal haplogroups and with testis size in Hu sheep	2
Genome‐wide association study for antibody response to Mycobacterium avium ssp. paratubeculosis in goats	2
Yak miR‐2285o‐3p attenuates hypoxia‐induced apoptosis by targeting caspase‐3	2
Functional SNPs in SYISL promoter significantly affect muscle fiber density and muscle traits in pigs	2
Resequencing the Yaroslavl cattle genomes reveals signatures of selection and a rare haplotype on BTA28 likely to be related to breed phenotypes	2
Genome‐wide single nucleotide polymorphism array and whole‐genome sequencing reveal the inbreeding progression of Banna minipig inbred line	2
A frameshift‐deletion mutation in Reelin causes cerebellar hypoplasia in White Swiss Shepherd dogs	2
Identification of processed pseudogenes in the genome of Thoroughbred horses: Possibility of gene‐doping detection considering the presence of pseudogenes	2
Identification of population‐informative markers from high‐density genotyping data through combined feature selection and machine learning algorithms: Application to European autochthonous and cosmopo	2
Issue Information	2
Evaluating three strategies of genome‐wide association analysis for integrating data from multiple populations	2
What's in a breed?	2
Towards identification of new genetic determinants for post‐weaning diarrhea in piglets	2
An updated Axiom buffalo genotyping array map and mapping of cattle quantitative trait loci to the new water buffalo reference genome assembly	2
Smartphone‐based digital phenotyping for genome‐wide association study of intramuscular fat traits in longissimus dorsi muscle of pigs	2
Rare cases of hernia of the linea alba among TWIST1 haploinsufficient Charolais cattle	2
Insights into the influence of diet and genetics on feed efficiency and meat production in sheep	2
A natural knockout of the MYO7A gene leads to pre‐weaning mortality in pigs	2
A case of tibial hemimelia in a German Galloway calf is associated with a novel mutation in the ALX4 gene	1
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Population structure of 3907 worldwide pigs and the introgression of Chinese indigenous pigs by European pigs	1
Canine coat color E locus updates: Identification of a new MC1R variant causing ‘sable’ coat color in English Cocker Spaniels and a proposed update to the E locus dominance hierarchy	1
Non‐contact detection method of pregnant sows backfat thickness based on two‐dimensional images	1
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Prospects of toll‐like receptors in dairy cattle breeding	1
Identification of critical lncRNAs for milk fat metabolism in dairy cows using WGCNA and the construction of a ceRNAs network	1
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A high‐density genetic linkage map for Chinese perch (Siniperca chuatsi) using 2.3K genotyping‐by‐sequencing SNPs	1
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Genetic polymorphisms within the ETAA1 gene associated with growth traits in Chinese sheep breeds	1
Selection signatures for fiber production in commercial species: A review	1
Study on the concordance between different SNP‐genotyping platforms in sheep	1
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pyRSD‐CoEv: A python package for selective sweep detection and co‐evolutionary gene cluster identification	1
Assessing the current genetic status of Lubei white goat based on the whole‐genome data	1
A whole genome scan reveals distinct features of selection in Zhaotong cattle of Yunnan province	1
Identification of genomic regions associated with resistance to gastrointestinal parasites in an indigenous sheep by single‐ and multiple‐locus methods	1
Integrated microRNA–mRNA analysis reveals the roles of microRNAs in the muscle fat metabolism of Yanbian cattle	1
In Memoriam	1
Improved MeSH analysis software tools for farm animals	1
Sexing assay for chickens and other birds for large‐scale application based on a conserved sequence variant in CHD1 genes on W and Z chromosomes	1