Journal of Computational Chemistry

Papers
(The TQCC of Journal of Computational Chemistry is 4. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-01-01 to 2026-01-01.)
ArticleCitations
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Potential energy surfaces and dynamic properties via ab initio composite and density functional approaches69
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Accurate and Cost‐Efficient DLPNOCCSD(T)‐Based Feller‐Peterson‐Dixon Protocols Calibrated on Association Reactions of Li+ Ion With Mixed Organic Carbonates61
Reactive orbital energy theory serving a theoretical foundation for the electronic theory of organic chemistry58
Molecular dynamics of liquid–electrode interface by integrating Coulomb interaction into universal neural network potential53
A fast approximate extension of the interacting quantum atoms energy decomposition to excited states48
Overreact, an in silico lab: Automative quantum chemical microkinetic simulations for complex chemical reactions47
Quantification of Lewis Acidity and Lewis Basicity: A Density‐Based Reactivity Theory Study46
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Alanine boronic acid functionalized UiO‐66 MOF as a nanoreactor for the conversion of CO2 into formic acid30
Ab initiostudies of counterion effects in molecular quantum‐dot cellular automata30
Improving the reliability of machine learned potentials for modeling inhomogeneous liquids29
Predicting Ti‐49 NMR Chemical Shift With New NMRDKH 28
Groupy: An Open‐Source Toolkit for Molecular Simulation and Property Calculation28
K 4 Carbon Modifications by Modulating Phonon Eigenvectors28
Revisiting the “Cluster‐In‐Solvent” Approach for Computational Spectroscopy: The Vibrational Circular Dichroism as a Test Case28
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Expanding horizons in conceptual density functional theory: Novel ensembles and descriptors to decipher reactivity patterns27
Microcanonical Rate Constants With Rice–Ramsperger–Kassel–Marcus in Eyringpy26
Energy and Real Space Characteristics of Non‐Covalent Interactions Across the Periodic Table23
Simulation studies of polypeptoids using replica exchange with dynamical scaling and dihedral biasing22
Chemical bonding in Uranium‐based materials: A local vibrational mode case study of Cs 2UO 2Cl 4 and UCl 4 crystals22
FFLUX molecular simulations driven by atomic Gaussian process regression models21
Ranking the Properties Important for Understanding Noncovalent Bond Strength21
Hydrostatic Pressure Effects on the Mechanical, Thermodynamic, Structural, Electronic, and Optical Attributes of AcGaO3: Implications for Renewable Energy Systems21
Producing chemically accurate atomic Gaussian process regression models by active learning for molecular simulation21
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A density fitting scheme for the fast evaluation of molecular electrostatic potential20
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Excited state relaxation mechanisms of paracetamol and acetanilide19
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Non‐Covalent Molecular Interaction Rules to Define Internal Dimer Coordinates for Quantum Mechanical Potential Energy Scans19
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Machine learning‐assisted search for novel coagulants: When machine learning can be efficient even if data availability is low18
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Neural graph distance embedding for molecular geometry generation18
Interaction energy of Cl2 and Br2 with H2O: Exchange, dispersion and density the crucial ingredients18
A configuration‐based heatbath‐CI for spin‐adapted multireference electronic structure calculations with large active spaces18
A Monte Carlo approach to study the effect of ions on the nucleation of sulfuric acid–water clusters18
Improving the scaling and performance of multiple time stepping‐based molecular dynamics with hybrid density functionals17
Dismantlement of ammonia upon interaction with Ben(n ≤ 10) clusters17
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Leveraging the Bias‐Variance Tradeoff in Quantum Chemistry for Accurate Negative Singlet‐Triplet Gap Predictions: A Case for Double‐Hybrid DFT16
Computational mechanistic studies on persulfate assisted p‐phenylenediamine polymerization16
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Peri‐Fused Six‐Membered Cyclic Nitrenium Ions (PCNIs): Electronic Structure and Aromaticity16
A machine learning potential construction based on radial distribution function sampling16
PharmRF: A machine‐learning scoring function to identify the best protein‐ligand complexes for structure‐based pharmacophore screening with high enrichments16
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PyRETIS 3: Conquering rare and slow events without boundaries16
Correlation consistent auxiliary basis sets in density fitting HartreeFock : The atoms sodium t16
Scoring molecular wires subject to an ultrafast laser pulse for molecular electronic devices15
TD‐DFT study of BIPS spiropyran: Effects of functionals and high‐polarity solvent on CspiroO bond dissociation and recovery15
Self‐consistent field method for open‐shell systems within the density‐matrix functional theory15
Py3BR: A software for computing atomic three‐body recombination rates15
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Leveraging Molecular Mechanics With the uESE Continuum Solvation Model for Efficient Solvation Free Energy Prediction: Impact of Conformation and Extensive Validation15
Structures and Solvation Energies Effects Versus Temperature. An MP2 Investigations in the Framework of Cluster Model15
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Effects of Probe‐Related Correlations on Local Electrostatic Potentials Around DNA14
Uncovering Clar's aromatic ‐sextet rule in the Hubbard model using Maximum Probability Domain Partitions14
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SeqDPI: A 1DCNN approach for predicting binding affinity of kinase inhibitors14
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Correction to “Exploring Lead‐Free Ca3BiCl3‐Based Perovskite Solar Cells: A Computational Comparison of Charge Transport Layers With DFT and SCAPS14
Elongation Method‐Based Alternating Multi‐Directional Automated Property Optimization Process and Its Application14
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Ab initio molecular dynamics study of intersystem crossing dynamics for MH2 (M = Si, Ge, Sn, Pb) on spin‐pure and spin‐mixed potential energy surfaces13
prepareforleap: An automated tool for fast PDB‐to‐parameter generation13
Predicting Molecular Energies of Small Organic Molecules With Multi‐Fidelity Methods13
Redox‐active ligands as a challenge for electronic structure methods13
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AIMD‐Based Protocols for Modeling Exciplex Fluorescence Spectra and Inter‐System Crossing in Photocatalytic Chromophores13
A multi‐descriptor analysis of substituent effects on the structure and aromaticity of benzene derivatives: π‐Conjugation versus charge effects13
Geometries, electronic structures, and bonding properties of endohedral Group‐14 Zintl clusters TM@E10 (TM = Fe, Co, Ni; E = Ge, Sn, Pb)13
An interoperable implementation of collective‐variable based enhanced sampling methods in extended phase space within the OpenMM package12
Theoretical study of structure sensitivity on ceria‐supported single platinum atoms and its influence on carbon monoxide adsorption12
Data‐driven and constrained optimization of semi‐local exchange and nonlocal correlation functionals for materials and surface chemistry12
The Influence of the Solvation on the Bonding of Molecular Complexes of Diatomic Halogens With Nitrogen‐Containing Donors and Their Stability With Respect to the Heterolytic Halogen‐Halogen Bond Split12
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An ETS‐NOCV‐based computational strategies for the characterization of concerted transition states involving CO212
On the reliability of atoms in molecules, noncovalent index, and natural bond orbital to identify and quantify noncovalent bonds12
The Effects of Conformational Sampling and QM Region Size in QM/MM Simulations: An Adaptive QM/MM Study With Model Systems12
Harmonic and anharmonic vibrational computations for biomolecular building blocks: Benchmarking DFT and basis sets by theoretical and experimental IR spectrum of glycine conformers11
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Assessment of density functional approximations for N2 and CO2 physisorption on benzene and graphene11
Foreword to the special issue on machine learning/artificial intelligence11
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Study of absorption and emission spectra of substituted terthiophene compounds by methods of theoretical chemistry11
A theoretical perspective of the ultrafast transient absorption dynamics of CsPbBr311
Voronota‐LT: Efficient, Flexible, and Solvent‐Aware Tessellation‐Based Analysis of Atomic Interactions11
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On the Meaning of De‐Excitations in Time‐Dependent Density Functional Theory Computations11
Ingenuity in performing replica permutation: How to order the state labels for improving sampling efficiency11
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TS‐tools: Rapid and automated localization of transition states based on a textual reaction SMILES input10
Structures and properties of ionic crystals and condensed phase ionic liquids predicted with the generalized energy‐based fragmentation method10
Reduction‐Induced Structural and Motional Changes of Plant‐Type Ferredoxin Using Molecular Dynamics and Umbrella Sampling Simulations10
Multiscale modeling of stochastic dynamics processes with MBN Explorer10
Unveiling the Hypervalent Electronic Structure of Main Group Zwitterions: Ylides or Ylenes? A DFT Study10
Atomic Simulations of Hetero Coalescence of Cu 147 and Ag 147 Clusters10
Theoretical design of new ligands to boost reaction rate and selectivity in palladium‐catalyzed aromatic fluorination10
Endo‐ and exohedral complexes of superphane with cations10
Theoretical investigation of structure and electronic properties in Cisplatin‐citrate complexes10
Molecular and Electronic Structure and Properties of the Single Benzene‐Based Fluorophores Containing Guanidine Subunit10
Unraveling Reaction Path Bifurcation: Insights Into Electron Movement via Natural Reaction Orbitals10
MSCMLCIDTI: Drug–Target Interaction Prediction Based on Multiscale Feature Extraction and Deep Interactive Attention Fusion Mechanisms10
Chemical bonding of HF, HCl, and H2O onto YF3 surfaces: Quantification by first principles10
Binding propensity and selectivity of cationic, anionic, and neutral guests with model hydrophobic hosts: A first principles study10
Achieving Pressure Consistency in Mechanochemical Simulations of Chemical Reactions Under Pressure10
Computational Study of Complexation in LiH:nNH3 (n = 1–4) Clusters: An Interplay Among Hydrogen, Dihydrogen, and Lithium Bonds10
Interrelationships Between Structural, Mechanical, and Electronic Properties in g‐ C 3 N 10
DFT Insights Into the Structural, Stability, Elastic, and Optoelectronic Characteristics of Na 9
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Qcforever2: Advanced Automation of Quantum Chemistry Computations9
On the computation of frequency‐dependent molecular magnetizabilities via dynamical charge and current electron densities9
Large scale peptide screening against main protease of SARS CoV‐29
Chemical Bond Overlap Descriptors From Multiconfiguration Wavefunctions9
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On the Role of Electronic Correlation and State‐Specific Environment Polarization in Singlet–Triplet Gap Inversion9
On delivering polar solvation free energy of proteins from energy minimized structures using a regularized super‐Gaussian Poisson–Boltzmann model9
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Folding molecular dynamics simulation of T‐peptide, a HIV viral entry inhibitor: Structure, dynamics, and comparison with the experimental data9
All‐atom simulations of the trimeric spike protein of SARS‐CoV‐2 in aqueous medium: Nature of interactions, conformational stability and free energy diagrams for conformational t9
Rational design of iron catalysts for CX bond activation9
Theoretical investigations of the substituent effect on the opto‐electronic properties of the linearly fused napthadithiophene‐based molecules9
Stability and Reactivity of TiO2n$$ {\left({\mathrm{TiO}}_2\right)}_n $$, n = 1–10, Clusters and Their Interactions With CO2$$ {\mathrm{CO}}_2 $$9
Theoretical study on the mechanism of alcohol photooxidation on Nb2O5 surface9
Quality over quantity: Sampling high probability rare events with the weighted ensemble algorithm9
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Photophysics of tzAdenine and tzGuanine fluorescent nucleobases embedded into DNA and RNA9
Active‐learning for global optimization of Ni‐Ceria nanoparticles: The case of Ce4−xNixO8−x (x = 1, 2, 3)9
A new chapter in the never ending story of cycloadditions: The puzzling case of SO2 and acetylene9
BinderSpace : A package for sequence space analyses for datasets of affinity‐selected 9
Computational assessment of the use of graphene‐based nanosheets as PtII chemotherapeutics delivery systems9
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Modeling spin relaxation in complex radical systems using MolSpin8
A DFT and kinetic study: Is it possible to prepare epoxides without catalysts using the in‐situ generated peroxy radicals or peroxides by one‐step method?8
Aromatic and magnetic properties in a series of heavy rare earth‐doped Ge6 cluster anions8
Modeling pyranose ring pucker in carbohydrates using machine learning and semi‐empirical quantum chemical methods8
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The SHARK integral generation and digestion system8
The 2,4,6,8‐Tetramethylhomotropyliumdication8
Study of mechanical, optical, and thermoelectric characteristics ofBa2XMoO6(X = Zn, Cd) double perovskite for energy harvesting8
Comprehensive investigation of electronic structure, phonon spectrum and thermoelectric performance of LuMSb (M = Ni, Pd, Pt) half Heusler compounds from first princip8
Mechanism of the Non‐Kasha Fluorescence in Pyrene8
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Growth pattern and electronic and magnetic properties of Cr‐doped silver clusters8
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Understanding chemistry with thesymmetry‐decomposed Voronoideformation density charge analysis8
Benchmarking biomolecular force field‐based Zn 2+ for mono‐ and bimetallic ligand binding sites8
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MzDOCK: A free ready‐to‐use GUI‐based pipeline for molecular docking simulations8
On the aromaticity and stability of benzynes in the ground and lowest‐lying triplet excited states8
Ladderenes as Covalently Condensed Acetylene: A DFT Investigation of Gold(I)‐Catalyzed Mechanism, Substituent Effects and Energy Storage Potential7
A theoretical investigation into gallic acid pyrolysis7
Hybrid Unsupervised/Supervised Machine Learning for Identifying Molecular Structural Fingerprints From Ensemble Property7
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An atoms‐in‐molecules characterization of the nature of the OO bond in peroxides and nitroxide dimers7
DOCK 6: Incorporating hierarchical traversal through precomputed ligand conformations to enable large‐scale docking7
A formula and numerical study on Ewald 1D summation7
Mechanistic Study of the Carbonylation of Aziridines to β‐Lactams: Alkylation, Solvent and Molecular NaBr and MgO Clusters Catalysts Effects7
Computational NMR spectroscopy of 205Tl7
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Development of a multi‐step screening procedure for redox active molecules in organic radical polymer anodes and as redox flow anolytes7
Automatic generation of complementary auxiliary basis sets for explicitly correlated methods7
Ionic liquids intercalation in titanium carbide MXenes: A first‐principles investigation7
Correction to “Three‐Dimensional Metallic Boron Carbide: Stability and Properties”7
Fragment and torsion biasing algorithms for construction of small organic molecules in proteins using DOCK7
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Studying the Protein Thermostabilities and Folding Rates by the Interaction Energy Network in Solvent7
Exploring Lead‐Free Ca3BiCl3‐Based Perovskite Solar Cells: A Computational Comparison of Charge Transport Layers With DFT and SCAPS1D7
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A coarse‐grained approach toNMR‐data‐assisted modeling of protein structures7
A Hammett's analysis of the substituent effect in functionalized diketopyrrolopyrrole (DPP) systems: Optoelectronic properties and intramolecular charge transfer effects7
Exploring the Chemical Space of Noncovalent Molecular Clusters Using Automated Cluster Building Algorithm and Neural Network Potential7
Molecular adsorption on coinage metal subnanoclusters: ADFT+D3investigation7
Cycloaddition reactions via “on water” protocol reactions: A density functional theory study7
Metadynamics simulations with Bohmian‐style bias potential7
Implementation of probe rheology simulation technique in atomistically detailed molecular dynamics simulations7
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Ligand‐stabilized heteronuclear diatomics of group 13 and 157
Ab initio electronic absorption spectra of para‐nitroaniline in different solvents: Intramolecular charge transfer effects7
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Uncovering the hidden reactivity of benzyne/aryne precursors utilized under milder condition: Bonding and stability studies by EDA‐NOCV analyses7
pyHRSOA and pyTHSOA: Postprocessing Codes for the Computation of Second and Third‐Order Scattering Optical Activities7
Accuracy of Reaction Coordinate Based Rate Theories for Modelling Chemical Reactions: Insights From the Thermal Isomerization in Retinal7
Electronic and magnetic properties of TATA‐DNA sequence driven by chemical functionalization7
A neural network potential based on pairwise resolved atomic forces and energies7
Theoretical exploration of the reactivity of cellulose models under non‐thermal plasma conditions—mechanistic and NBO studies7
Concerted versus stepwise proton transfer reactions in the [2, 2′‐bipyridyl]‐3‐3′‐diol molecule: A static and dynamic ab‐initio investigation7
Delocalization‐ratio analysis of 3‐center bonding in position‐space for closo‐boranes and related systems: Approaching the styx picture and beyond7
The Pfizer Crystal Structure Database: An essential tool for structure‐based design at Pfizer7
Thermal isomerization rates in retinal analogues using Ab‐Initio molecular dynamics7
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Enhancement of energy decomposition analysis in fragment molecular orbital calculations6
Computational Evaluation of Molecular Binding on Metal Surfaces in Temperature Programmed Desorption: Accuracy of DFT Functionals and Neural Network 6
Foreword to the special issue for Elfi Kraka6
Binding of human ACE2 and RBD of Omicron enhanced by unique interaction patterns among SARS‐CoV ‐2 variants of concern6
Molecular Insights Into the Ionic Assembly of Poly‐Galacturonic Acid Oligomers—Impact of Charge, Ionic Radius, and Polymer Functionalization6
Beryllium bonding with noble gas atoms6
A Theoretical Study on Crossings Among Electronically Excited States and Laser Cooling of Group VIA (S, Se, and Te) Hydrides6
An efficient method by combining different basis sets and SAPT levels6
Theoretical Study of the Subsequent Decomposition Mechanisms of 1,1‐Diamino‐2,2‐dinitroethene (FOX‐7)6
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Realization of the structural fluctuation of biomolecules in solution: Generalized Langevin mode analysis6
Sparse group selection and analysis offunction‐relatedresidue forprotein‐staterecognition6
SPANA: Spatial decomposition analysis for cellular‐scale molecular dynamics simulations6
Investigation of water substitution at RuII complexes by conceptual density function theory approach6
The unusual stability of H‐bonded complexes in solvent caused by greater solvation energy of complex compared to those of isolated fragments6
Artificial Neural Networks Fitting of Potential Energy Curves and Surfaces: The 1/R Conundrum6
Lantern‐type dinickel complexes: An exploration of possibilities for nickel–nickel bonding with bridging bidentate ligands6
Learning organo‐transition metal catalyzed reactions by graph neural networks6
Metal Dimers‐Doped h‐BN Structures as Novel Toxic Gases Sensors With Enhanced Sensitivity Properties: An ADFT Study6
Accurate thermochemistry at affordable cost by means of an improved version of the JunChS‐F12 model chemistry6
Development and Validation of Atomic Group Descriptors for Substituent Effects6
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Toward accurate modeling of structure and energetics of bulk hexagonal boron nitride6
Optimizing Computational Parameters for Nuclear Electronic Orbital Density Functional Theory: A Benchmark Study on Proton Affinities6
Discriminating and understanding molecular crystal polymorphism6
Fast vibrational analysis of molecular systems6
Tuning Hydrogen Bond Strength in GC ( WC ), GC 6
Bonding Evolution Theory Study of the [3+2] Cycloaddition Reaction Between Benzonitrile Oxide and Ethylenic Derivatives6
Formation and infrared spectroscopic characterization of carbon suboxide complexes TM‐η1‐C3O2 and the inserted ketenylidene complexes OCTMCCO6
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Assessing the Catalytic Potential of Novel ADAP‐M (M = Cu, Ag, Au) Catalysts in [3 + 2] Cycloaddition Reactions6
Nonlinear optical properties DFT calculations of polyacethylene and copolymers models substituted with aldimines chromophores as side chains6
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Predicting antibiotic resistance in complex protein targets using alchemical free energy methods5
Band gap, Jahn‐Teller deformation, octahedra rotation in transition metal perovskites LaTiO35
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