OOIR: Observatory of International Research

Papers

(The median citation count of European Biophysics Journal With Biophysics Letters is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Standard protocol for mass photometry experiments	37
Indenting soft samples (hydrogels and cells) with cantilevers possessing various shapes of probing tip	36
Amino acid side chain contribution to protein FTIR spectra: impact on secondary structure evaluation	31
Evaluation of protein secondary structure from FTIR spectra improved after partial deuteration	30
Symmetry-breaking transitions in the early steps of protein self-assembly	28
Structure, gating and interactions of the voltage-dependent anion channel	27
Forces maintaining the DNA double helix	22
Uncertainty in protein–ligand binding constants: asymmetric confidence intervals versus standard errors	22
A quantitative calcium phosphate nanocluster model of the casein micelle: the average size, size distribution and surface properties	21
Microscale Thermophoresis and additional effects measured in NanoTemper Monolith instruments	20
SEDNTERP: a calculation and database utility to aid interpretation of analytical ultracentrifugation and light scattering data	19
The role of physical cues in the development of stem cell-derived organoids	19
Albumin displacement at the air–water interface by Tween (Polysorbate) surfactants	18
How arginine derivatives alter the stability of lipid membranes: dissecting the roles of side chains, backbone and termini	17
How proteins open fusion pores: insights from molecular simulations	17
Viscoelasticity of multicellular systems caused by collective cell migration: dynamics at the biointerface	16
Influence of cholesterol on electroporation in lipid membranes of giant vesicles	16
Micropipette-based biomechanical nanotools on living cells	15
Multiscale nature of cell rearrangement caused by collective cell migration	14
Isothermal titration calorimetry (ITC): a standard operating procedure (SOP)	14
Analysis of nonideality: insights from high concentration simulations of sedimentation velocity data	14
Kinetics of irreversible pore formation under constant electrical tension in giant unilamellar vesicles	14
Biophysical characterization of melanoma cell phenotype markers during metastatic progression	13
Quinidine partially blocks mitochondrial voltage-dependent anion channel (VDAC)	12
Aminoethyl substitution enhances the self-assembly properties of an aminocellulose as a potential archaeological wood consolidant	12

Marangoni effect and cell spreading	12
Non-contact elastography methods in mechanobiology: a point of view	12
Reproducibility and accuracy of microscale thermophoresis in the NanoTemper Monolith: a multi laboratory benchmark study	12
Standard operation procedure for switchSENSE DRX systems	12
Revisiting macromolecular hydration with HullRadSAS	12
Extracellular ionic fluxes suggest the basis for cellular life at the 1/f ridge of extended criticality	11
Modulation of the mitochondrial voltage-dependent anion channel (VDAC) by hydrogen peroxide and its recovery by curcumin	11
Tert-butyldimethylsilyl chitosan synthesis and characterization by analytical ultracentrifugation, for archaeological wood conservation	10
Multi-wavelength analytical ultracentrifugation as a tool to characterise protein–DNA interactions in solution	10
Mechanical waves caused by collective cell migration: generation	10
A multi-laboratory benchmark study of isothermal titration calorimetry (ITC) using Ca2+ and Mg2+ binding to EDTA	10
How does curvature affect the free-energy barrier of stalk formation? Small vesicles vs apposing, planar membranes	9
How accurate is circular dichroism-based model validation?	9
The acid–base and redox properties of menaquinone MK-4, MK-7, and MK-9 (vitamin K2) in DMPC monolayers on mercury	8
Homophilic and heterophilic cadherin bond rupture forces in homo- or hetero-cellular systems measured by AFM-based single-cell force spectroscopy	8
A quantitative interspecies comparison of the respiratory mucociliary clearance mechanism	8
Standard operating procedure for NanoTemper Monolith measurements	8
A calibration disk for the correction of radial errors from chromatic aberration and rotor stretch in the Optima AUC™ analytical ultracentrifuge	8
Cu(ii) complex with auxin (3-indoleacetic acid) and an aromatic planar ligand: synthesis, crystal structure, biomolecular interactions and radical scavenging activity	8
Chemically synthesized Gb3 glycosphingolipids: tools to access their function in lipid membranes	8
Fluorescence-coupled micropipette aspiration assay to examine calcium mobilization caused by red blood cell mechanosensing	8
Electrostatic effects in saturation of membrane binding of cationic cell-penetrating peptide	8
Standard operating procedure for fluorescent thermal shift assay (FTSA) for determination of protein–ligand binding and protein stability	7
Extending the double-dispersion Cole–Cole, Cole–Davidson and Havriliak–Negami electrochemical impedance spectroscopy models	7
Acoustofluidic interferometric device for rapid single-cell physical phenotyping	7
Dps–DNA interaction in Marinobacter hydrocarbonoclasticus protein: effect of a single-charge alteration	7
Model lipid systems and their use to evaluate the phase state of biomembranes, their mechanical properties and the effect of non-conventional antibiotics: the case of daptomycin	7
Proximity-induced electrodeformation and membrane capacitance coupling between cells	7
Using modern approaches to sedimentation velocity to detect conformational changes in proteins	7
AAV analysis by sedimentation velocity analytical ultracentrifugation: beyond empty and full capsids	7
Probing the effect of aroma compounds on the hydrodynamic properties of mucin glycoproteins	7
Differential dielectroscopic data on the relation of erythrocyte membrane skeleton to erythrocyte deformability and flicker	7
Mathematical model of the ventricular action potential and effects of isoproterenol-induced cardiac hypertrophy in rats	7
Structural and biochemical analyses of the tetrameric cell binding domain of Lys170 from enterococcal phage F170/08	6
A standard operating procedure for an enzymatic activity inhibition assay	6
Melting of DNA in confined geometries	6
Quality control of purified proteins to improve data quality and reproducibility: results from a large-scale survey	6
Wave propagation through a viscous fluid-filled elastic tube under initial pressure: theoretical and biophysical model	6
Morphological, fractal, and textural features for the blood cell classification: the case of acute myeloid leukemia	6
Analytical ultracentrifugation sedimentation velocity for the characterization of recombinant adeno-associated virus vectors sub-populations	6
Energetic and thermodynamical aspects of the cyclodextrins-cannabidiol complex in aqueous solution: a molecular-dynamics study	6
Protein-dependent membrane remodeling in mitochondrial morphology and clathrin-mediated endocytosis	6
Insight into dual fluorescence effects induced by molecular aggregation occurring in membrane model systems containing 1,3,4-thiadiazole derivatives	6
A study on the secondary structure of the metalloregulatory protein CueR: effect of pH, metal ions and DNA	6
Membrane fusion studied by colloidal probes	6
Influence of crowding agents on the dynamics of a multidomain protein in its denatured state: a solvation approach	6
Studies of transmembrane peptides by pulse dipolar spectroscopy with semi-rigid TOPP spin labels	6
Ultrasound-induced protein restructuring and ordered aggregation to form amyloid crystals	6
Structure and dynamics of sodium alginate as elucidated by chemical shift anisotropy and site-specific spin–lattice relaxation time measurements	5
Macromolecular interactions in vitro, comparing classical and novel approaches	5

The importance of hydrophobic interactions in the structure of transcription systems	5
Syndiotactic hexamer peptide nanodots	5
In vitro single vesicle fusion assays based on pore-spanning membranes: merits and drawbacks	5
SDS-induced hexameric oligomerization of myotoxin-II from Bothrops asper assessed by sedimentation velocity and nuclear magnetic resonance	5
Substitution of histidine 30 by asparagine in manganese superoxide dismutase alters biophysical properties and supports proliferation in a K562 leukemia cell line	5
Exothermic transitions in the heat capacity profiles of human cerebrospinal fluid	5
Attenuated total reflection-Fourier transform infrared spectroscopy: a tool to characterize antimicrobial cyclic peptide–membrane interactions	5
The effects of short term hyperglycemia on human red blood cells studied using Raman spectroscopy and optical trap	5
Exploring the diversity of mechanosensitive channels in bacterial genomes	5
A stalk fluid forming above the transition from the lamellar to the rhombohedral phase of lipid membranes	5
Molecular dynamics simulation or structure refinement of proteins: are solvent molecules required? A case study using hen lysozyme	5
Ligand-receptor-mediated attachment of lipid vesicles to a supported lipid bilayer	5
Reflectometry and molecular dynamics study of the impact of cholesterol and melatonin on model lipid membranes	5
A new UltraScan module for the characterization and quantification of analytical buoyant density equilibrium experiments to determine AAV capsid loading	5
The role of cholesterol binding in the control of cholesterol by the Scap–Insig system	5
NMR and dynamic light scattering give different diffusion information for short-living protein oligomers. Human serum albumin in water solutions of metal ions	5
New wave-type mechanism of saltatory conduction in myelinated axons and micro-saltatory conduction in C fibres	5
Towards understanding single-channel characteristics of OccK8 purified from Pseudomonas aeruginosa	5
On the utility of microfluidic systems to study protein interactions: advantages, challenges, and applications	5
Flagellar rotational features of an optically confined bacterium at high frequency and temporal resolution reveal the microorganism’s response to changes in the fluid environment	5
Mechanistic insights of neuronal calcium and IP3 signaling system regulating ATP release during ischemia in progression of Alzheimer’s disease	5
Partial structure, dampened mobility, and modest impact of a His tag in the SARS-CoV-2 Nsp2 C-terminal region	5
Analysis of patchclamp recordings: model-free multiscale methods and software	5
Simulating diffusion from a cluster of point sources using propagation integrals	5
KD determination from time-resolved experiments on live cells with LigandTracer and reconciliation with end-point flow cytometry measurements	5
Molecular crowding accelerates aggregation of α-synuclein by altering its folding pathway	5
Lipid headgroup and side chain architecture determine manganese-induced dose dependent membrane rigidification and liposome size increase	4
Thermodynamics of semi-specific ligand recognition: the binding of dipeptides to the E.coli dipeptide binding protein DppA	4
Hydrodynamic characterization of a vesicular stomatitis virus-based oncolytic virus using analytical ultracentrifugation	4
Interaction standards for biophysics: anti-lysozyme nanobodies	4
Structure and mechanism of secondary sulfonamide binding to carbonic anhydrases	4
Chiral discrimination in a mutated IDH enzymatic reaction in cancer: a computational perspective	4
On the utility of fluorescence-detection analytical ultracentrifugation in probing biomolecular interactions in complex solutions: a case study in milk	4
Calcium signaling modulates the dynamics of cilia and flagella	4
Comparison of three AUC techniques for the determination of the loading status and capsid titer of AAVs	4
The protein–surfactant stoichiometry governs the conformational switching and amyloid nucleation kinetics of tau K18	4
Effective inhibition of insulin amyloid fibril aggregation by nickel(II) complexes containing heterocyclic thiosemicarbazones	4
Structural features and stability of apo- and holo-forms of a simple iron–sulfur protein	4
Analytical ultracentrifugation: still the gold standard that offers multiple solutions	4
Biophysical study of phloretin with human serum albumin in liposomes using spectroscopic methods	4
New insights into novel Escherichia coli colistin-resistant strains isolated from Argentina	4
Molecular dynamics study of the competitive binding of hydrogen peroxide and water molecules with DNA phosphate groups	4
SViMULATE: a computer program facilitating interactive, multi-mode simulation of analytical ultracentrifugation data	4
Fluorescence-based techniques for the detection of the oligomeric status of proteins: implication in amyloidogenic diseases	4
Fast and synchronized fluctuations of cortical actin negatively correlate with nucleoli liquid–liquid phase separation in T cells	4
The lid domain is important, but not essential, for catalysis of Escherichia coli pyruvate kinase	4
Molecular dynamics simulation study of the positioning and dynamics of α-tocopherol in phospholipid bilayers	4
Thermodynamic basis of the α-helix and DNA duplex	4
Improved Hodgkin–Huxley type model for neural action potentials	4
The general anesthetic etomidate and fenamate mefenamic acid oppositely affect GABAAR and GlyR: a structural explanation	3
DNA translocation through pH-dependent soft nanopores	3
Systematic noise removal from analytical ultracentrifugation data with UltraScan	3
Active wetting of epithelial tissues: modeling considerations	3
Kinetic and thermodynamic modeling of a voltage-gated sodium channel	3
Determination of mRNA copy number in degradable lipid nanoparticles via density contrast analytical ultracentrifugation	3
Systems of conductive skin for power transfer in clinical applications	3
Clostridium perfringens Beta2 toxin forms highly cation-selective channels in lipid bilayers	3
Calibrating analytical ultracentrifuges	3
Interactive multiple binding of oleic acid, warfarin and ibuprofen with human serum albumin revealed by thermal and fluorescence studies	3
Measuring compressibility in the optima AUC™ analytical ultracentrifuge	3
Beyond the US-SOMO-AF database: a new website for hydrodynamic, structural, and circular dichroism calculations on user-supplied structures	3
Purification of a heterodimeric Reelin construct to investigate binding stoichiometry	3
Membrane-embedded TSPO: an NMR view	3
Microfabricated cantilevers for parallelized cell-cell adhesion measurements	3
NMR measurement of biomolecular translational and rotational motion for evaluating changes of protein oligomeric state in solution	3
Selected tools to visualize membrane interactions	3
Effects of sugar concentration on the electroporation, size distribution and average size of charged giant unilamellar vesicles	3
Drug–ionic surfactant interactions: density, sound speed, spectroscopic, and electrochemical studies	3
Analytical ultracentrifuge: an ideal tool for characterization of non-coding RNAs	3
Lipid–protein forces predict conformational changes in a mechanosensitive channel	3
Initial biophysical characterization of Amynthas gracilis giant extracellular hemoglobin (HbAg)	3