Computer Methods and Programs in Biomedicine

Article	Citations
Multi-Modality guidance based surgical navigation for percutaneous endoscopic transforaminal discectomy	385
A real-time computer-aided diagnosis method for hydatidiform mole recognition using deep neural network	373
Using machine learning models for predicting monthly iPTH levels in hemodialysis patients	348
SIMUS3: An open-source simulator for 3-D ultrasound imaging	211
The impact of small movements with dual lumen cannulae during venovenous extracorporeal membrane oxygenation: A computational fluid dynamics analysis	160
Differential evolution method to find optimal location of a single-element transducer for transcranial focused ultrasound therapy	151
An interactive and realistic phantom for cricothyroidotomy simulation of a patient with obesity through a reusable design using 3D-printing and Arduino	149
4-dimensional local radial basis function interpolation of large, uniformly spaced datasets	148
Real-time soft body dissection simulation with parallelized graph-based shape matching on GPU	139
Multimodal radiomics based on lesion connectome predicts stroke prognosis	125
Evaluation of cerebrovascular hemodynamics in vascular dementia patients with a new individual computational fluid dynamics algorithm	120
Importance of the enhanced cooling system for more spherical ablation zones: Numerical simulation, ex vivo and in vivo validation	116
CTGAN-driven synthetic data generation: A multidisciplinary, expert-guided approach (TIMA)	112
Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach	110
Lung nodule classification using radiomics model trained on degraded SDCT images	110
Raw photoplethysmogram waveforms versus peak-to-peak intervals for machine learning detection of atrial fibrillation: Does waveform matter?	107
Identifying the patient harms to include in an in silico clinical trial	104
Influence of genetic mutations to atria vulnerability to atrial fibrillation: An in-silico 3D human atria study	103
VOC-DL: Deep learning prediction model for COVID-19 based on VOC virus variants	102
Influence of therapeutic grip exercises induced loading rates in distal radius fracture healing with volar locking plate fixation	100
CAPNet: Context attention pyramid network for computer-aided detection of microcalcification clusters in digital breast tomosynthesis	94
Biomechanical analysis of all-polyethylene total knee arthroplasty on periprosthetic tibia using the finite element method	92
Accurate consistency-based MSA reducing the memory footprint	88
Modelling lower-limb peripheral arterial disease using clinically available datasets: impact of inflow boundary conditions on hemodynamic indices for restenosis prediction	86
Editorial Board	86

Fear of falling in community-dwelling older adults: What their gait acceleration pattern reveals	85
Comparison of two methods for converting central venous values of acid-base status to arterial values in critically ill patients	74
Finite element analysis of conductive hearing loss caused by fixation and detachment of ligament and tendon in the middle ear	74
A Graph-guided Hybrid Regularization Method For Bioluminescence Tomography	73
Computer-aided detection and segmentation of malignant melanoma lesions on whole-body 18	71
Cuffless blood pressure estimation using chaotic features of photoplethysmograms and parallel convolutional neural network	71
MHSU-Net: A more versatile neural network for medical image segmentation	70
Prediction of the mode of delivery using artificial intelligence algorithms	69
From local counterfactuals to global feature importance: efficient, robust, and model-agnostic explanations for brain connectivity networks	69
IODeep: An IOD for the introduction of deep learning in the DICOM standard	68
SC-Net: Symmetrical conical network for colorectal pathology image segmentation	68
Artery vein classification in fundus images using serially connected U-Nets	67
Modelling of Cardiac Biventricular Electromechanics with Coronary Blood Flow to Investigate the Influence of Coronary Arterial Motion on Coronary Haemodynamic	67
Using AI and passive medical radiometry for diagnostics (MWR) of venous diseases	61
Computer modeling of radiofrequency cardiac ablation: 30 years of bioengineering research	61
Optimal machine learning methods for prediction of high-flow nasal cannula outcomes using image features from electrical impedance tomography	60
An automatic pipeline for atlas-based fetal and neonatal brain segmentation and analysis	58
A cloud-based consultation and collaboration system for radiotherapy: Remote decision support services for community radiotherapy centers	58
Dynamic-MRI quantification of abdominal wall motion and deformation during breathing and muscular contraction	58
CPSS: Fusing consistency regularization and pseudo-labeling techniques for semi-supervised deep cardiovascular disease detection using all unlabeled electrocardiograms	57
Unsupervised band selection of medical hyperspectral images guided by data gravitation and weak correlation	57
Evaluation of deep learning training strategies for the classification of bone marrow cell images	57
Ontology Driven Smart Health Service Integration	56
MBGA-Net: A multi-branch graph adaptive network for individualized motor imagery EEG classification	56
FSI modeling on the effect of artery-aneurysm thickness and coil embolization in patient cases	55
Medical image super-resolution reconstruction algorithms based on deep learning: A survey	55
Light&fast generative adversarial network for high-fidelity CT image synthesis of liver tumor	54
PregGAN: A prognosis prediction model for breast cancer based on conditional generative adversarial networks	53
Health classification of Meibomian gland images using keratography 5M based on AlexNet model	53
MRCON-Net: Multiscale reweighted convolutional coding neural network for low-dose CT imaging	53
A simple agent-based hybrid model to simulate the biophysics of glioblastoma multiforme cells and the concomitant evolution of the oxygen field	52
A framework for motor imagery with LSTM neural network	52
Biomechanical analysis of femoral stems in hinged total knee arthroplasty in physiological and osteoporotic bone	52
Sleep apnea screening based on Photoplethysmography data from wearable bracelets using an information-based similarity approach	52
Missing data imputation using utility-based regression and sampling approaches	52
PyMIC: A deep learning toolkit for annotation-efficient medical image segmentation	51
Simulation-driven optimization of insulin therapy profiles in a commercial hybrid closed-loop system	51
Comparative biomechanical analysis of rigid vs. flexible fixation devices for the lumbar spine: A geometrically patient-specific poroelastic finite element study	51
FM-Net: Deep Learning Network for the Fundamental Matrix Estimation from Biplanar Radiographs	50
Performance and limitations of a supervised deep learning approach for the histopathological Oxford Classification of glomeruli with IgA nephropathy	50
Improving convolutional neural network learning based on a hierarchical bezier generative model for stenosis detection in X-ray images	50
In-silico neuro musculoskeletal model reproduces the movement types obtained by spinal micro stimulation	50
Phys-DAT: A physiologically-based pharmacokinetic model for unraveling the dissolution, transit and absorption processes using PhysPK®	50
A probabilistic generative model to discover the treatments of coexisting diseases with missing data	50
Automatic segmentation for ultrasound image of carotid intimal-media based on improved superpixel generation algorithm and fractal theory	49
A neural network framework for immediate temperature prediction of surgical hand-held drilling	48
ML3CNet: Non-local means-assisted automatic framework for lung cancer subtypes classification using histopathological images	48
A multiconsistent computational methodology to resolve a diffusive epidemiological system with effects of migration, vaccination and quarantine	48
Multicentric intelligent cardiotocography signal interpretation using deep semi-supervised domain adaptation via minimax entropy and domain invariance	48
Defining a master curve of abdominal aortic aneurysm growth and its potential utility of clinical management	48

Automatic arteriosclerotic retinopathy grading using four-channel with image merging	48
SFTNet: A microexpression-based method for depression detection	47
United multi-task learning for abdominal contrast-enhanced CT synthesis through joint deformable registration	47
Multi-classification of arrhythmias using a HCRNet on imbalanced ECG datasets	46
A computer based facial flaps simulator using projective dynamics	46
Translating medical image to radiological report: Adaptive multilevel multi-attention approach	46
Facial expressions to identify post-stroke: A pilot study	45
TransAnno-Net: A Deep Learning Framework for Accurate Cell Type Annotation of Mouse Lung Tissue Using Self-supervised Pretraining	45
Extension of physical activity recognition with 3D CNN using encrypted multiple sensory data to federated learning based on multi-key homomorphic encryption	45
Artificial intelligence model for tumoral clinical decision support systems	45
Dynamic elastic modulus assessment of the early degeneration model of an intervertebral disc in cynomolgus monkeys with one strike loading	45
Phantom study of an in-house amplitude-gating respiratory method with silicon photomultiplier technology positron emission tomography/computed tomography	44
Retinex-qDPC: Automatic background-rectified quantitative differential phase contrast imaging	44
Disease X epidemic control using a stochastic model and a deterministic approximation: Performance comparison with and without parameter uncertainties	44
Editorial Board	43
Editorial Board	43
Factors influencing the effectiveness of using flash glucose monitoring on glycemic control among type 1 diabetes in Saudi Arabia	43
Spatiotemporal multiscale ICA could invariantly extract task (motor) modes from wavelet subbands of fMRI data	43
Digital signal extraction approach for cardiotocography image	42
Editorial Board	42
KUB-UNet: Segmentation of Organs of Urinary System from a KUB X-ray Image	42
A computational method to predict cerebral perfusion flow after endovascular treatment based on invasive pressure and resistance	41
Localizing the seizure onset zone and predicting the surgery outcomes in patients with drug-resistant epilepsy: A new approach based on the causal network	41
Recurrence quantification analysis of rs-fMRI data: A method to detect subtle changes in the TgF344-AD rat model	40
Haemosync: A synchronisation algorithm for multimodal haemodynamic signals	40
Corrigendum to “Generation of post-meal insulin correction boluses in type 1 diabetes simulation models for in-silico clinical trials: More realistic scenarios obtained using a decision tree approach”	40
Quantitative cervical spine injury responses in whiplash loading with a numerical method of natural neural reflex consideration	39
Modified Theoretical Model Predicts Radial Support Capacity of Polymer Braided Stents	39
A novel MCF-Net: Multi-level context fusion network for 2D medical image segmentation	39
Building robust pathology image analyses with uncertainty quantification	39
Corticosteroid sensitivity detection in sepsis patients using a personalized data mining approach: A clinical investigation	37
SMD-YOLO: An efficient and lightweight detection method for mask wearing status during the COVID-19 pandemic	37
Reallocation of cutaneous and global blood circulation during sauna bathing through a closed-loop model	37
Effect of pulmonary regurgitation on cardiac functions based on a human bi-ventricle model	37
Automatic registration of dental CT and 3D scanned model using deep split jaw and surface curvature	37
Predicting 6-minute walking test outcomes in patients with chronic obstructive pulmonary disease without physical performance measures	37
Predicting the Risk of Type B Aortic Dissection Using Hemodynamic Parameters in Aortic Arches: A Comparative Study between Healthy and Repaired Aortas	37
Integrating Prior Knowledge with Deep Learning for Optimized Quality Control in Corneal Images: A Multicenter Study	36
TGMIL: A hybrid multi-instance learning model based on the Transformer and the Graph Attention Network for whole-slide images classification of renal cell carcinoma	36
Molecular dynamics simulation of hyaluronic acid hydrogels: Effect of water content on mechanical and tribological properties	36
A deformation model of pulsating brain tissue for neurosurgery simulation	36
Multi-scale dual-channel feature embedding decoder for biomedical image segmentation	36
End-to-end multimodal clinical depression recognition using deep neural networks: A comparative analysis	36
3D multi-scale residual fully convolutional neural network for segmentation of extremely large-sized kidney tumor	36
An improved binary particle swarm optimization algorithm for clinical cancer biomarker identification in microarray data	35
A multi-task learning model with reinforcement optimization for ASD comorbidity discrimination	35
Self-supervised learning with self-distillation on COVID-19 medical image classification	35
Bone mineral density modeling via random field: Normality, stationarity, sex and age dependence	35
SEMRES - A Triple Security Protected Blockchain Based Medical Record Exchange Structure	34
Characterization of mechanical properties of adult chests during pre-hospital manual chest compressions through a simple viscoelastic model	34
A robust myoelectric pattern recognition framework based on individual motor unit activities against electrode array shifts	34
A risk and credibility framework for in silico clinical trials of medical devices	34
Data-driven prediction of decannulation probability and timing in patients with severe acquired brain injury	34
Medical image recognition and segmentation of pathological slices of gastric cancer based on Deeplab v3+ neural network	34
Numerical study on optimization of quantitative treatment conditions for skin cancer photothermal therapy considering multiple blood vessels	34
Information fusion and multi-classifier system for miner fatigue recognition in plateau environments based on electrocardiography and electromyography signals	34
A joint evaluation method of dynamic spectrum extraction methods for non-invasive blood component measurement based on stability coefficient, data point adoption rate, and smoothness of the spectrum	34
Surgical procedure prediction using medical ontological information	33
Assessing ChatGPT's ability to emulate human reviewers in scientific research: A descriptive and qualitative approach	33
gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy	33
Breathing patterns recognition: A functional data analysis approach	33
The synergy of cybernetical intelligence with medical image analysis for deep medicine: A methodological perspective	33
Sensitivity analysis of paediatric knee kinematics to the graft surgical parameters during anterior cruciate ligament reconstruction: A sequentially linked neuromusculoskeletal-finite element analysis	32
Granger causality test with nonlinear neural-network-based methods: Python package and simulation study	32
A novel CFD-based computed index of microcirculatory resistance (IMR) derived from coronary angiography to assess coronary microcirculation	32
Progression of blood-borne viruses through bloodstream: A comparative mathematical study	32
Chest x-ray automated triage: A semiologic approach designed for clinical implementation, exploiting different types of labels through a combination of four Deep Learning architectures	32
Tailored cancer therapy by magnetic nanoparticle hyperthermia: A virtual scenario simulation method	32
GCW-UNet segmentation of cardiac magnetic resonance images for evaluation of left atrial enlargement	32
Editorial Board	31
Editorial Board	31
Analysis of a nonstandard computer method to simulate a nonlinear stochastic epidemiological model of coronavirus-like diseases	31
Nonlinear dose-response relationship in tDCS-induced brain network synchrony: A resting-state whole-brain model analysis	31
Quality evaluation of induced pluripotent stem cell colonies by fusing multi-source features	31
Editorial Board	31
Multi-target reconstruction based on subspace decision optimization for bioluminescence tomography	31
CAD-RADS scoring of coronary CT angiography with Multi-Axis Vision Transformer: A clinically-inspired deep learning pipeline	31
Geodesic fiber tracking in white matter using activation function	31
DARVIC: Dihedral angle-reliant variant impact classifier for functional prediction of missense VUS	31
Dynamic simulation and analysis of the influence of urethral morphological changes on urodynamics after benign prostatic hyperplasia surgery: A computational fluid dynamics study	31

Editorial Board	31
Lesion attention guided neural network for contrast-enhanced mammography-based biomarker status prediction in breast cancer	31
An agent-based model to assess large-scale COVID-19 vaccination campaigns for the Italian territory: The case study of Lombardy region	31
An accurate and trustworthy deep learning approach for bladder tumor segmentation with uncertainty estimation	31
Radiofrequency thermocoagulation of trigeminal nerve assisted by nerve bundle extraction and image fusion based on hamilton-jacobi equation	30
Monte Carlo modeling of hepatic steatosis based on stereology and spatial distribution of fat droplets	30
Neonatal EEG seizure detection using a new signal structural complexity measure based on matching pursuit decomposition with nonstationary dictionary	30
A high-fidelity geometric multiscale hemodynamic model for predicting myocardial ischemia	30
Considering population variability of electrophysiological models improves the in silico assessment of drug-induced torsadogenic risk	30
Displacement voxelization to resolve mesh-image mismatch: Application in deriving dense white matter fiber strains	30
Editorial Board	30
Prediction of lung cancer risk based on age and smoking history	30
A novel endoscopic posterior cervical decompression and interbody fusion technique: Feasibility and biomechanical analysis	30
Enlarging the thermal coagulation volume during thermochemical ablation with alternating acid-base injection by shortening the injection interval: A computational study	30
MBNM: Multi-branch network based on memory features for long-tailed medical image recognition	30
Image-based Artificial Intelligence models in the diagnosis and classification of vascular anomalies of the soft tissue in the head and neck	30
Evaluation of the spline reconstruction technique for preclinical PET imaging	30
Parameter quantification for oxygen transport in the human brain	30
Magnetic resonance image diagnosis of femoral head necrosis based on ResNet18 network	29
From free‐text electronic health records to structured cohorts: Onconum, an innovative methodology for real‐world data mining in breast cancer	29
NeuroDM: Decoding and visualizing human brain activity with EEG-guided diffusion model	29
mvLognCorrEst: an R package for sampling from multivariate lognormal distributions and estimating correlations from uncomplete correlation matrix	29
A Medical image segmentation model with auto-dynamic convolution and location attention mechanism	29
An end-to-end framework for intima media measurement and atherosclerotic plaque detection in the carotid artery	29
Rad4XCNN: A new agnostic method for post-hoc global explanation of CNN-derived features by means of Radiomics	29
Recent advancements and future directions in automatic swallowing analysis via videofluoroscopy: A review	28
Effective active learning in digital pathology: A case study in tumor infiltrating lymphocytes	28
MEDUSA©: A novel Python-based software ecosystem to accelerate brain-computer interface and cognitive neuroscience research	28
Diabetic retinopathy detection through convolutional neural networks with synaptic metaplasticity	28
Gait performance in toddlers born preterm: A sensor based quantitative characterization	28
MM-CCNB: Essential protein prediction using MAX-MIN strategies and compartment of common neighboring approach	28
EESCN: A novel spiking neural network method for EEG-based emotion recognition	28
Masked hypergraph learning for weakly supervised histopathology whole slide image classification	27
Real-time estimation of lung deformation from body surface using a general CoordConv CNN	27
Virtual diabetic patient with physical activity dynamics	27
AutoDPS: An unsupervised diffusion model based method for multiple degradation removal in MRI	27
Monitoring deterioration of knee osteoarthritis using vibration arthrography in daily activities	27
Assessing the impact of tear direction in coronary artery dissection on thrombosis development: A hemodynamic computational study	27
Experimental and computational model approach to assess the photothermal effects in transparent nanocrystalline yttria stabilized zirconia cranial implant	27
Endoscopic versus laparoscopic bariatric procedures: A computational biomechanical study through a patient-specific approach	27
BaroWavelet: An R-based tool for dynamic baroreflex evaluation through wavelet analysis techniques	27
PredictMed-epilepsy: A multi-agent based system for epilepsy detection and prediction in neuropediatrics	27
A Markov Chain methodology for care pathway mapping using health insurance data, a study case on pediatric TBI	27
Enhancing multimodal medical image analysis with Slice-Fusion: A novel fusion approach to address modality imbalance	27
Editorial Board	27
Tumor spheroid elasticity estimation using mechano-microscopy combined with a conditional generative adversarial network	27
BAPCP: A comprehensive and user-friendly web tool for identifying biomarkers from protein microarray technologies	27
Interactive polar diagrams for model comparison	27
Cross-modal alignment and contrastive learning for enhanced cancer survival prediction	27
The effect of CT high-resolution imaging diagnosis based on deep residual network on the pathology of bladder cancer classification and staging	27
Altered dynamic joint space in the lateral condyle compartment following medial unicompartmental knee arthroplasty	27
Automating COVID-19 epidemiological situation reports based on multiple data sources, the Netherlands, 2020 to 2023	26
Noninvasive and fast method of calculation for instantaneous wave-free ratio based on haemodynamics and deep learning	26
Dual-path neural network extracts tumor microenvironment information from whole slide images to predict molecular typing and prognosis of Glioma	26
Automated analysis of medial gastrocnemius muscle-tendon junction displacements in heathy young adults during isolated contractions and walking using deep neural networks	26
DE-MRI myocardial fibrosis segmentation and classification model based on multi-scale self-supervision and transformer	26
Effect of a reduced arterial axial pre-stretch ratio during aging on the cardiac output and cerebral blood flow in the healthy elders	26
Chained occurrences of early afterdepolarizations may create a directional triggered activity to initiate reentrant ventricular tachyarrhythmias	26
An integrated deep learning model for motor intention recognition of multi-class EEG Signals in upper limb amputees	26
Dual center validation of deep learning for automated multi-label segmentation of thoracic anatomy in bedside chest radiographs	26
Physics-Informed Graph Neural Networks to solve 1-D equations of blood flow	26
BGCSL: An unsupervised framework reveals the underlying structure of large-scale whole-brain functional connectivity networks	26
Scale resolving simulations of the effect of glottis motion and the laryngeal jet on flow dynamics during respiration	26
4D-Precise: Learning-based 3D motion estimation and high temporal resolution 4DCT reconstruction from treatment 2D+t X-ray projections	26
Influence of adaptive denoising on Diffusion Kurtosis Imaging at 3T and 7T	26
Computational simulation of cellular proliferation using a meshless method	25
Classification of recurrent major depressive disorder using a residual denoising autoencoder framework: Insights from large-scale multisite fMRI data	25
Skin lesion segmentation using two-phase cross-domain transfer learning framework	25
Generative adversarial network based data augmentation and gender-last training strategy with application to bone age assessment	25
Symbolic knowledge extraction for explainable nutritional recommenders	25
Screening chronic myeloid leukemia neutrophils using a novel 3-Dimensional Spectral Gradient Mapping algorithm on hyperspectral images	25
Is Human Walking a Network Medicine Problem? An Analysis Using Symbolic Regression Models with Genetic Programming	25
Automatic analysis system of calcaneus radiograph: Rotation-invariant landmark detection for calcaneal angle measurement, fracture identification and fracture region segmentation	25
Real-time ultrasound shear wave elastography using a local phase gradient	25
Theoretical prediction of early afterdepolarization-evoked triggered activity formation initiating ventricular reentrant arrhythmias	25
Multi-event survival analysis through dynamic multi-modal learning for ICU mortality prediction	25
Computer-aided diagnostic system for hypertensive retinopathy: A review	25
Deep learning network for medical volume data segmentation based on multi axial plane fusion	25
Gradient boosted trees with individual explanations: An alternative to logistic regression for viability prediction in the first trimester of pregnancy	25
Social Media Data Analytics for Outbreak Risk Communication: Public Attention on the “New Normal” During the COVID-19 Pandemic in Indonesia	24
MigraR: An open-source, R-based application for analysis and quantification of cell migration parameters	24
MemBrain: A deep learning-aided pipeline for detection of membrane proteins in Cryo-electron tomograms	24
Attentional decoder networks for chest X-ray image recognition on high-resolution features	24
Effects of using different algorithms and fiducial points for the detection of interbeat intervals, and different sampling rates on the assessment of pulse rate variability from photoplethysmography	24
Machine learning for surgical time prediction	24
3D-MRI super-resolution reconstruction using multi-modality based on multi-resolution CNN	24
Stress analysis of intervertebral disc during occupational activities	24
Validity and reliability of different smartphones applications to measure HRV during short and ultra-short measurements in elite athletes	24
Developing machine learning models for prediction of mortality in the medical intensive care unit	24
Dilated densely connected U-Net with uncertainty focus loss for 3D ABUS mass segmentation	24
COVID-19: Estimation of the transmission dynamics in Spain using a stochastic simulator and black-box optimization techniques	24
Precise prediction of multiple anticancer drug efficacy using multi target regression and support vector regression analysis	24
DAX-Net: A dual-branch dual-task adaptive cross-weight feature fusion network for robust multi-class cancer classification in pathology images	24
Lightweight convolution transformer for cross-patient seizure detection in multi-channel EEG signals	24
Optimization of thread configuration in dental implants through regulating the mechanical stimuli in neighboring bone	23