Computer Methods and Programs in Biomedicine

Article	Citations
Evaluation of Mandibular Advancement Surgery Efficacy in Treating Obstructive Sleep Apnea: A Study on Turbulence Kinetic Energy	332
MBGA-Net: A multi-branch graph adaptive network for individualized motor imagery EEG classification	317
Multi-task longitudinal forecasting with missing values on Alzheimer’s disease	241
Development of detailed finite element models for in silico analyses of brain impact dynamics	154
Unsupervised domain adaptation for nuclei segmentation: Adapting from hematoxylin & eosin stained slides to immunohistochemistry stained slides using a curriculum approach	127
Enhanced joint hybrid deep neural network explainable artificial intelligence model for 1-hr ahead solar ultraviolet index prediction	127
DualA-Net: A generalizable and adaptive network with dual-branch encoder for medical image segmentation	125
CASMatching strategy for automated detection and quantification of carotid artery stenosis based on digital subtraction angiography	121
Non-rigid image registration using a modified fuzzy feature-based inference system for 3D cardiac motion estimation	117
A microstructure-based modeling approach to assess aging-sensitive mechanics of human intervertebral disc	113
Artery vein classification in fundus images using serially connected U-Nets	113
Multiple electrocardiogram generator with single-lead electrocardiogram	112
A simulation study of transcranial magnetoacoustic stimulation of the basal ganglia thalamic neural network to improve pathological beta oscillations in Parkinson's disease	103
Effect of non-Newtonian fluid rheology on an arterial bypass graft: A numerical investigation guided by constructal design	96
Cross-Gram matrices and their use in transfer learning: Application to automatic REM detection using heart rate	94
Practical use of a multicenter clinical research support system connected to electronic medical records	94
A multimodal Parkinson quantification by fusing eye and gait motion patterns, using covariance descriptors, from non-invasive computer vision	89
Computer simulations of consecutive radiofrequency pulses applied at the same point during cardiac catheter ablation: Implications for lesion size and risk of overheating	87
In silico fatigue optimization of TAVR stent designs with physiological motion in a beating heart model	85
BLA-Net:Boundary learning assisted network for skin lesion segmentation	84
A Novel Combined Level Set Model for Carpus Segmentation from Magnetic Resonance Images with Prior Knowledge aligned in Polar Coordinate System	82
A His bundle pacing protocol for suppressing ventricular arrhythmia maintenance and improving defibrillation efficacy	82
Editorial Board	82
Comparison of two methods for converting central venous values of acid-base status to arterial values in critically ill patients	80
ECGMiner: A flexible software for accurately digitizing ECG	79

A real-time integrated framework to support clinical decision making for covid-19 patients	78
Cardi-Net: A deep neural network for classification of cardiac disease using phonocardiogram signal	76
Information extraction from medical case reports using OpenAI InstructGPT	75
Patient-ventilator asynchrony classification in mechanically ventilated patients: Model-based or machine learning method?	74
Biophysical essentials – A full stack open-source software framework for conserved and advanced analysis of patch-clamp recordings	73
Inductive thematic analysis of healthcare qualitative interviews using open-source large language models: How does it compare to traditional methods?	72
Tabular data augmentation for video-based detection of hypomimia in Parkinson’s disease	67
Domain adaptation based on rough adjoint inconsistency and optimal transport for identifying autistic patients	67
Breast mass detection in digital mammography based on anchor-free architecture	65
Unsupervised detection and classification of heartbeats using the dissimilarity matrix in PCG signals	62
Advanced image analysis-based evaluation of protein antibody microarray chemiluminescence signal improves glioma type identification by blood serum proteins concentrations	61
Convolutional bi-directional learning and spatial enhanced attentions for lung tumor segmentation	61
An automatic segmentation method with self-attention mechanism on left ventricle in gated PET/CT myocardial perfusion imaging	60
The Gap in the Thickness: Estimating Effectiveness of Pulmonary Nodule Detection in Thick- and Thin-Section CT Images with 3D Deep Neural Networks	58
Adaptive learning and cross training improves R-wave detection in ECG	58
Light&fast generative adversarial network for high-fidelity CT image synthesis of liver tumor	57
Machine learning models for predicting diagnosis or prognosis of COVID-19: A systematic review	57
MATLAB-based innovative 3D finite element method simulator for optimized real-time hyperthermia analysis	56
Evaluation of eyestrain with vertical electrooculogram	55
Electrical-mechanical dynamical coupling between electrocardiographic and photoplethysmographic signals during cardiopulmonary resuscitation	55
A robust discriminative multi-atlas label fusion method for hippocampus segmentation from MR image	54
D-SORM: A digital solution for remote monitoring based on the attitude of wearable devices	54
SI-ViT: Shuffle instance-based Vision Transformer for pancreatic cancer ROSE image classification	54
Interpretable machine learning models for predicting in-hospital death in patients in the intensive care unit with cerebral infarction	53
Differential evolution method to find optimal location of a single-element transducer for transcranial focused ultrasound therapy	52
A self-learned decomposition and classification model for schizophrenia diagnosis	50
Spatial feature and resolution maximization GAN for bone suppression in chest radiographs	49
Model based dose personalization in clinical trials	48
Ontology Driven Smart Health Service Integration	48
Functional analysis of arteriovenous fistulae in non-contrast magnetic resonance images	47
Automated detection and classification of patient–ventilator asynchrony by means of machine learning and simulated data	47
Real-time model-based cerebral perfusion calculation for ischemic stroke	47
Estimation of tumor parameters using neural networks for inverse bioheat problem	46
Integration- and separation-aware adversarial model for cerebrovascular segmentation from TOF-MRA	46
Cerebral perfusion simulation using realistically generated synthetic trees for healthy and stroke patients	46
Femoral image segmentation based on two-stage convolutional network using 3D-DMFNet and 3D-ResUnet	46
A parametric head geometry model accounting for variation among adolescent and young adult populations	46
Prediction of the position of external markers using a recurrent neural network trained with unbiased online recurrent optimization for safe lung cancer radiotherapy	46
Big problems in spatio-temporal disease mapping: Methods and software	46
A Graph-guided Hybrid Regularization Method For Bioluminescence Tomography	46
Automatic normalized digital color staining in the recognition of abnormal blood cells using generative adversarial networks	44
Multi-Modality guidance based surgical navigation for percutaneous endoscopic transforaminal discectomy	43
Reinforcement learning coupled with finite element modeling for facial motion learning	43
An interactive augmented reality software for facial reconstructive surgeries	42
Applications of genome-scale metabolic models to the study of human diseases: A systematic review	41
Fast and robust parameter estimation with uncertainty quantification for the cardiac function	41
Physically informed deep neural networks for metabolite-corrected plasma input function estimation in dynamic PET imaging	41
Adaptive processing for noise attenuation in laser speckle contrast imaging	41
Data-driven learning to identify biomarkers in bipolar disorder	41
Masked autoencoders with handcrafted feature predictions: Transformer for weakly supervised esophageal cancer classification	41

Management of medical and health big data based on integrated learning-based health care system: A review and comparative analysis	40
Fusion-based tensor radiomics using reproducible features: Application to survival prediction in head and neck cancer	40
MRI radiogenomics for intelligent diagnosis of breast tumors and accurate prediction of neoadjuvant chemotherapy responses-a review	40
Quantitative transmastoid ultrasound for detecting middle ear effusion in pediatric patients	40
Peristaltic activity for electro-kinetic complex driven cilia transportation through a non-uniform channel	40
Deep reconstruction-recoding network for unsupervised domain adaptation and multi-center generalization in colonoscopy polyp detection	40
Survival prediction in second primary breast cancer patients with machine learning: An analysis of SEER database	39
Evaluation of deep learning training strategies for the classification of bone marrow cell images	39
Advanced OCTA imaging segmentation: Unsupervised, non-linear retinal vessel detection using modified self-organizing maps and joint MGRF modeling	39
Estimators and confidence intervals off2using bootstrap meth	39
Using AI and passive medical radiometry for diagnostics (MWR) of venous diseases	38
KIEGLFN: A unified acne grading framework on face images	38
Automated anxiety detection using probabilistic binary pattern with ECG signals	38
A hybrid few-shot multiple-instance learning model predicting the aggressiveness of lymphoma in PET/CT images	38
Improved generative adversarial network for retinal image super-resolution	38
Classification-based deep neural network vs mixture density network models for insulin sensitivity prediction problem	38
Inflating 2D convolution weights for efficient generation of 3D medical images	38
Transcription factor NFE2L3 promotes the proliferation of esophageal squamous cell carcinoma cells and causes radiotherapy resistance by regulating IL-6	38
A novel online BCI system using speech imagery and ear-EEG for home appliances control	38
Dual-space high-frequency learning for transformer-based MRI super-resolution	37
The feasibility of predicting impending malignant ventricular arrhythmias by using nonlinear features of short heartbeat intervals	37
Editorial Board	37
VENet: Variational energy network for gland segmentation of pathological images and early gastric cancer diagnosis of whole slide images	37
Risk assessment of resurfacing implant loosening and femur fracture under low-energy impacts taking into account degenerative changes in bone tissues. Computer simulation	37
SIMUS3: An open-source simulator for 3-D ultrasound imaging	36
Mechanical behaviors of a new elliptical valve stent in bicuspid aortic valve	36
An intelligent diagnostic method of ECG signal based on Markov transition field and a ResNet	36
Real-time soft body dissection simulation with parallelized graph-based shape matching on GPU	36
Fear of falling in community-dwelling older adults: What their gait acceleration pattern reveals	35
A lightweight asymmetric U-Net framework for acute ischemic stroke lesion segmentation in CT and CTP images	35
Nasal airflow comparison in neonates, infant and adult nasal cavities using computational fluid dynamics	35
VP-Detector: A 3D multi-scale dense convolutional neural network for macromolecule localization and classification in cryo-electron tomograms	35
Direct tool for quantitative analysis of cell/object dynamic behavior – metastasis and far beyond	35
An interactive and realistic phantom for cricothyroidotomy simulation of a patient with obesity through a reusable design using 3D-printing and Arduino	35
The integration of clinical data in the assessment of multiple sclerosis – A review	34
A study for lens capsule tearing during capsulotomy by finite element simulation	34
Automatic data extraction from 24 hour blood pressure measurement reports of a large multicenter clinical trial	34
Optimal Deep Belief Network with Opposition based Pity Beetle Algorithm for Lung Cancer Classification: A DBNOPBA Approach	34
Deep collaborative network with alpha matte for precise knee tissue segmentation from MRI	34
Ventricular fibrillation waveform properties influenced by thoracic impedance guided chest compressions in a porcine model	34
Kashin-Beck disease diagnosis based on deep learning from hand X-ray images	34
Deep Gaussian processes for multiple instance learning: Application to CT intracranial hemorrhage detection	33
Editorial Board	33
FEM based simulation of magnetic drug targeting in a multibranched vessel model	32
CTGAN-driven synthetic data generation: A multidisciplinary, expert-guided approach (TIMA)	32
Deep convolutional neural networks in thyroid disease detection: A multi-classification comparison by ultrasonography and computed tomography	32
A novel combined dynamic ensemble selection model for imbalanced data to detect COVID-19 from complete blood count	32
BreathVisionNet: A pulmonary-function-guided CNN-transformer hybrid model for expiratory CT image synthesis	32
TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning	31
Euler-Lagrange numerical simulation of improved magnetic drug delivery in a three-dimensional CT-based carotid artery bifurcation	31
The practicability of different preparation of mandibular molar restored by modified endocrown with intracanal extension: Computational analysis using finite element models	31
A self-organizing deep neuro-fuzzy system approach for classification of kidney cancer subtypes using miRNA genomics data	31
Improved algorithm for generating evenly-spaced streamlines from an orientation field on a triangulated surface	31
CureAuxSP: An R package for estimating mixture cure models with auxiliary survival probabilities	31
Patient-specific multi-scale design optimization of transcatheter aortic valve stents	31
Automated ECG classification using a non-local convolutional block attention module	31
SC-Net: Symmetrical conical network for colorectal pathology image segmentation	31
MHSU-Net: A more versatile neural network for medical image segmentation	30
Cross-task cognitive workload recognition using a dynamic residual network with attention mechanism based on neurophysiological signals	30
Computational investigation reveals that the mutant strains of SARS-CoV2 have differential structural and binding properties	30
High performance multi-platform computing for large-scale image-based finite element modeling of bone	30
A deep learning-based interactive medical image segmentation framework with sequential memory	30
Model-based evaluation of local hemodynamic effects of enhanced external counterpulsation	30
Evaluation of cerebrovascular hemodynamics in vascular dementia patients with a new individual computational fluid dynamics algorithm	30
TGRA-P: Task-driven model predicts 90-day mortality from ICU clinical notes on mechanical ventilation	30
DallphinAtoM: Physiologically based pharmacokinetics software predicting human PK parameters based on physicochemical properties, in vitro and animal in vivo data	29
Influence of therapeutic grip exercises induced loading rates in distal radius fracture healing with volar locking plate fixation	29
Sensitivity of hostile hemodynamics to aneurysm geometry via unsupervised shape interpolation	29
Consistent representation via contrastive learning for skin lesion diagnosis	29
CAPNet: Context attention pyramid network for computer-aided detection of microcalcification clusters in digital breast tomosynthesis	29
Numerical analysis of airflow and particle deposition in multi-fidelity designs of nasal replicas following nasal administration	29
A novel methodology for evaluation of S	29
Editorial Board	29
Evaluation of the type I error rate when using parametric bootstrap analysis of a cluster randomized controlled trial with binary outcomes and a small number of clusters	29
Graph- and transformer-guided boundary aware network for medical image segmentation	29
Implementing new computational methods for the study of JCT and SC inner wall basement membrane biomechanics and hydrodynamics	28
Comparison of machine learning methods in the early identification of vasculitides, myositides and glomerulonephritides	28
IODeep: An IOD for the introduction of deep learning in the DICOM standard	28
Towards precision medicine in breast imaging: A novel open mammography database with tailor-made 3D image retrieval for AI and teaching	28
A Laplacian regularized graph neural network for predictive modeling of multiple chronic conditions	28

Editorial Board	28
Reducing residual forces in spinal fusion using a custom-built rod bending machine	28
HCTMFS: A multi-modal feature selection framework with higher-order correlated topological manifold for ESRDaMCI	28
Intelligent assessment of atrial fibrillation gradation based on sinus rhythm electrocardiogram and baseline information	28
Estimation of the in-plane ultimate stress of lamellar tissue as a function of bone mineral density and osteocyte lacunae porosity	28
Assessing privacy leakage in synthetic 3-D PET imaging using transversal GAN	28
Automatic Segmentation of the Optic Nerve Head Region in Optical Coherence Tomography: A Methodological Review	28
Biomechanical analysis of all-polyethylene total knee arthroplasty on periprosthetic tibia using the finite element method	28
Editorial Board	28
Editorial Board	28
MPC based optimization applied to treatment of HCV infections	27
Normalization of series of fundus images to monitor the geographic atrophy growth in dry age-related macular degeneration	27
Accurate consistency-based MSA reducing the memory footprint	27
Mechanistic modeling of metastatic relapse in early breast cancer to investigate the biological impact of prognostic biomarkers	27
Using a poroelastodynamic model to investigate the dynamic behaviour of articular cartilage	27
MRI-based mechanical analysis of carotid atherosclerotic plaque using a material-property-mapping approach	27
A real-time computer-aided diagnosis method for hydatidiform mole recognition using deep neural network	27
Meta-computational techniques' for managing spare data: An application in off-pump heart surgery	27
Application of full waveform inversion algorithm in Laplace–Fourier domain for high-contrast ultrasonic bone quantitative imaging	27
Success indicators for an efficient utilization of cloud computing in healthcare organizations: Saudi healthcare as case study	26
Editorial Board	26
Lazy Luna: Extendible software for multilevel reader comparison in cardiovascular magnetic resonance imaging	26
A cloud-based consultation and collaboration system for radiotherapy: Remote decision support services for community radiotherapy centers	26
1D-model of the human liver circulatory system	26
Editorial Board	26
Optimal machine learning methods for prediction of high-flow nasal cannula outcomes using image features from electrical impedance tomography	26
Multi-view features integrated 2D\3D Net for glomerulopathy histologic types classification using ultrasound images	26
A bidirectional interaction-based hybrid network architecture for EEG cognitive recognition	26
A novel dynamic electromagnetic tracking navigation system for distal locking of intramedullary nails	26
Editorial Board	26
Equivalent loads from the life-cycle of acetabular cages in relation to bone-graft transformation	25
Alteration in membrane-based pumping flow with rheological behaviour: A mathematical model	25
Learning brain representation using recurrent Wasserstein generative adversarial net	25
An optimal ablation time prediction model based on minimizing the relapse risk	25
Adaptive surface representation based on homogeneous hexahedrons for interactive simulation of soft tissue cutting	25
VOC-DL: Deep learning prediction model for COVID-19 based on VOC virus variants	25
Knowledge and attitude of healthcare professionals toward the use of telemedicine-robotic remote presence during Hajj	25
Simplified modeling of implanted medical devices with metallic filamentary closed loops exposed to low or medium frequency magnetic fields	25
Cardiovascular readmissions in Saudi Arabia	25
New approach to establish a surgical planning in infantile vallecular cyst synchronous with laryngomalacia based on aerodynamic analysis	25
Disentangled representation for sequential treatment effect estimation	24
Incorporating strategy in hybrid surgery for continuous two-level cervical spondylosis from a biomechanical perspective	24
Hospital-wide surveillance-based antimicrobial treatments: A Monte-Carlo look-ahead method	24
Mathematical modelling, parameter estimation and computational simulation for skin wound healing under Copaiferalangsdorffi treatments	24
Editorial Board	24
Mechanism of exercise intolerance in heart diseases predicted by a computer model of myocardial demand‐supply feedback system	24
High Inter-Patient Variability in Sepsis Evolution: A Hidden Markov Model Analysis	24
A cascade of preconditioned conjugate gradient networks for accelerated magnetic resonance imaging	24
4-dimensional local radial basis function interpolation of large, uniformly spaced datasets	24
Editorial Board	24
An in silico derived dosage and administration guide for effective thermochemical ablation of biological tissues with simultaneous injection of acid and base	24
Predict DLBCL patients' recurrence within two years with Gaussian mixture model cluster oversampling and multi-kernel learning	24
Digital biomarkers of mobility and quality of life in Parkinson's disease based on a wearable motion analysis LAB	23
Risk of hypoglycemia in type 1 diabetes management: An in-silico sensitivity analysis to assess and rank the quantitative impact of different behavioral factors	23
Spatial-Frequency dual-branch attention model for determining KRAS mutation status in colorectal cancer with T2-weighted MRI	23
Recognition of necrotic regions in MRI images of chronic spinal cord injury based on superpixel	23
COLET: A dataset for COgnitive workLoad estimation based on eye-tracking	23
Early Alzheimer’s disease diagnosis with the contrastive loss using paired structural MRIs	23
Breast ultrasound image despeckling using multi-filtering DFrFT and adaptive fast BM3D	23
HPM-Net: Hierarchical progressive multiscale network for liver vessel segmentation in CT images	23
Fully-automated functional region annotation of liver via a 2.5D class-aware deep neural network with spatial adaptation	23
Automatic Sleep Stage Classification Using Temporal Convolutional Neural Network and New Data Augmentation Technique from Raw Single-Channel EEG	23
Development, validation and a case study: The female finite element head model (FeFEHM)	23
Quantification of the intrinsic neural plexus of the heart – The missing link in histological tissue analysis	23
Enhancing AI-CDSS with U-AnoGAN: Tackling data imbalance	23
Spectral and network characterization of focal seizure types and phases	23
Mass Image Synthesis in Mammogram with Contextual Information Based on GANs	23
Explainable machine learning models based on multimodal time-series data for the early detection of Parkinson’s disease	23
ProDiv: Prototype-driven consistent pseudo-bag division for whole-slide image classification	23
Study on transfer learning capabilities for pneumonia classification in chest-x-rays images	22
A vision transformer based approach for analysis of plasmodium vivax life cycle for malaria prediction using thin blood smear microscopic images	22
Pulmonary response prediction through personalized basis functions in a virtual patient model	22
From local counterfactuals to global feature importance: efficient, robust, and model-agnostic explanations for brain connectivity networks	22
A standardized analytics pipeline for reliable and rapid development and validation of prediction models using observational health data	22
Unsupervised band selection of medical hyperspectral images guided by data gravitation and weak correlation	22
An ECG generative model of myocardial infarction	22
GEEMAEE: A SAS macro for the analysis of correlated outcomes based on GEE and finite-sample adjustments with application to cluster randomized trials	22
Cuffless blood pressure estimation using chaotic features of photoplethysmograms and parallel convolutional neural network	22
A novel higher order appearance texture analysis to diagnose lung cancer based on a modified local ternary pattern	22
Faster region convolutional neural network and semen tracking algorithm for sperm analysis	22
A review of image processing methods for fetal head and brain analysis in ultrasound images	22
Synthetic microbleeds generation for classifier training without ground truth	21
The impact of small movements with dual lumen cannulae during venovenous extracorporeal membrane oxygenation: A computational fluid dynamics analysis	21
Design and research of bone repair scaffold based on two-way fluid-structure interaction	21
Human-airway surface mesh smoothing based on graph convolutional neural networks	21
Case studies of clinical decision-making through prescriptive models based on machine learning	21
Automatic segmentation and reconstruction of intracellular compartments in volumetric electron microscopy data	21
MV-MS-FETE: Multi-view multi-scale feature extractor and transformer encoder for stenosis recognition in echocardiograms	21
An automatic pipeline for atlas-based fetal and neonatal brain segmentation and analysis	21
Experimentally validated modeling of dynamic drug-hERG channel interactions reproducing the binding mechanisms and its importance in action potential duration.	21
CT-based COPD identification using multiple instance learning with two-stage attention	21
One-shot screening: Utilization of a two-dimensional convolutional neural network for automatic detection of left ventricular hypertrophy using electrocardiograms	21
Segmentation of paracentral acute middle maculopathy lesions in spectral-domain optical coherence tomography images through weakly supervised deep convolutional networks	21
D2-RecST: Dual-domain joint reconstruction strategy for fluorescence molecular tomography based on image domain and perception domain	21
Influence of genetic mutations to atria vulnerability to atrial fibrillation: An in-silico 3D human atria study	21