OOIR: Observatory of International Research

Papers

(The TQCC of FEMS Microbiology Ecology is 17. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)

Article	Citations
Influence of plant genotype and soil on the wheat rhizosphere microbiome: evidences for a core microbiome across eight African and European soils	121
Temporal dynamics of bacterial communities during seed development and maturation	44
Four decades of soil water stress history together with host genotype constrain the response of the wheat microbiome to soil moisture	43
Different community assembly mechanisms underlie similar biogeography of bacteria and microeukaryotes in Tibetan lakes	42
Insights into dryland biocrust microbiome: geography, soil depth and crust type affect biocrust microbial communities and networks in Mojave Desert, USA	36
Alkaline soil pH affects bulk soil, rhizosphere and root endosphere microbiomes of plants growing in a Sandhills ecosystem	35
Exploring the abundance, metabolic potential and gene expression of subseafloor Chloroflexi in million-year-old oxic and anoxic abyssal clay	34
Seasonal effects of river flow on microbial community coalescence and diversity in a riverine network	32
Temporal changes in microbial communities attached to forages with different lignocellulosic compositions in cattle rumen	31
Insights into the community structure and lifestyle of the fungal root endophytes of tomato by combining amplicon sequencing and isolation approaches with phytohormone profiling	30
Supplemental selenium source on gut health: insights on fecal microbiome and fermentation products of growing puppies	29
Responses of abundant and rare bacterioplankton to temporal change in a subtropical urban reservoir	29
Water management and phenology influence the root-associated rice field microbiota	29
Metagenome-assembled genome distribution and key functionality highlight importance of aerobic metabolism in Svalbard permafrost	29
The bacterioplankton community composition and a host genotype dependent occurrence of taxa shape the Daphnia magna gut bacterial community	28
Abundance, diversity and mobility potential of antibiotic resistance genes in pristine Tibetan Plateau soil as revealed by soil metagenomics	28
Temporal changes in water temperature and salinity drive the formation of a reversible plastic-specific microbial community	26
Root exposure to apple replant disease soil triggers local defense response and rhizoplane microbiome dysbiosis	25
The marine intertidal zone shapes oyster and clam digestive bacterial microbiota	25
Effects of simulated drought on biological soil quality, microbial diversity and yields under long-term conventional and organic agriculture	25
Breeding selection imposed a differential selective pressure on the wheat root-associated microbiome	24
Microbial selenium metabolism: a brief history, biogeochemistry and ecophysiology	23
Diversity and genetic lineages of environmental staphylococci: a surface water overview	23
Editorial: The Environmental Dimension of Antibiotic Resistance	23
Abiotic factors influence patterns of bacterial diversity and community composition in the Dry Valleys of Antarctica	23

MicroNiche: an R package for assessing microbial niche breadth and overlap from amplicon sequencing data	23
Community dynamics of duckweed-associated bacteria upon inoculation of plant growth-promoting bacteria	22
Effect of stevia on the gut microbiota and glucose tolerance in a murine model of diet-induced obesity	22
Vegetation type determines spore deposition within a forest–agricultural mosaic landscape	22
Distribution of phenotypic and genotypic antimicrobial resistance and virulence genes in Vibrio parahaemolyticus isolated from cultivated oysters and estuarine water	21
Global warming shifts the composition of the abundant bacterial phyllosphere microbiota as indicated by a cultivation-dependent and -independent study of the grassland phyllosphere of a long-term warm	21
Local factors drive bacterial and microeukaryotic community composition in lake surface sediment collected across an altitudinal gradient	20
Response of a methane-driven interaction network to stressor intensification	19
Acinetobacter baumannii in manure and anaerobic digestates of German biogas plants	19
Online searching platform for the antibiotic resistome in bacterial tree of life and global habitats	19
Exploring microbial determinants of apple replant disease (ARD): a microhabitat approach under split-root design	19
Redox stratification within cryoconite granules influences the nitrogen cycle on glaciers	19
Mucoidy, a general mechanism for maintaining lytic phage in populations of bacteria	18
Strong effects of lab-to-field environmental transitions on the bacterial intestinal microbiota ofMus musculusare modulated byTrichuris murisinfection	17
AHL-priming for enhanced resistance as a tool in sustainable agriculture	17
Culturable diversity of bacterial endophytes associated with medicinal plants of the Western Ghats, India	17
Multi-species relationships in legume roots: From pairwise legume-symbiont interactions to the plant – microbiome – soil continuum	17
Biopolymers modulate microbial communities in municipal organic waste digestion	17
Bacterial community dynamics across developmental stages of fungal fruiting bodies	17