Journal of Microbiological Methods

Article	Citations
Editorial Board	112
Engineering of a monitorable expression system to characterize β-lactamase genes in Enterobacteriaceae	51
Quantitative method for measuring the proportion of bacterial cells expressing phase 1 or 2 of flagellin of Salmonella enterica serovar Typhimurium	39
Hyphal induction in Candida albicans: Optimizing medium parameters to accelerate hyphal growth enhanced by GlcNAc	29
Evaluation of phenotypic methods for detection of polymyxin B-resistant bacteria	27
Campylobacter fetus subspecies specific PCR assays inferred from comparative genomic analysis for accurate subspecies identification	27
Blood Culture Time to Positivity in Adults: Pathogen Type Prediction and Contamination Discrimination	26
Rapid antibiotic sensitivity prediction in Pseudomonas aeruginosa using UV–vis-NIR spectroscopy and gray-box one-vs-all models	26
Quantitative detection of Ganodermati lucidum immunomodulatory protein-8 by a peptide-antigen-antibody sandwich ELISA	26
A new killing assay with the Caenorhabditis elegans PX627 mutant to assess the virulence of uropathogenic Escherichia coli strains	25
Multienzyme isothermal rapid amplification (MIRA)-LFD assay for rapid detection of PEDV and PoRVA	23
A qPCR method for detection of ‘Candidatus Liberibacter asiaticus’: Optimization of selected assay parameters	23
Combination of the electronic nose with microbiology as a tool for rapid detection of Salmonella	23
Improved productivity and dye removal performance of Trametes versicolor pellets using rice husk as a co-substrate	22
Evaluation of colonization factors of ETEC isolated from diarrheal patients in Bangladesh: A comparative approach using multiplex PCR and dot blot immunoassay	22
Development of a high-throughput method for processing sponge-stick samples to detect viable Bacillus anthracis spores	22
Methodological validation of microbial limit tests for high-viscosity and common pharmaceutical excipients	21
Validation of gavage sampling as tool for longitudinal sampling of microbiota of the mouse gastric lumen	21
Development of qPCR methods to detect and quantify the novel Fusarium graminearum 3ANX chemotype variant	20
Evaluation of electroactive denitrifiers at different potentials, temperatures and buffers based on microcalorimetry	20
Standardization of in vitro dual-species biofilms of Staphylococcus pseudintermedius and Malassezia pachydermatis: a strategy to establish an ex vivo biofilm model	20
Editorial Board	19
Editorial Board	19
Diagnosis of abdominal tuberculosis: Detection of mycobacterial CFP-10 and HspX proteins by gold nanoparticle-PCR amplified immunoassay	18
Evaluation and optimization of lysis method for microbial DNA extraction from epiphytic phyllosphere samples	17

Enterobacteriaceae in unpackaged ice cream: Implications for microbial safety and methodological concordance between ISO and TEMPO®	17
Performance evaluation of InfectID-BSI: A rapid quantitative PCR assay for detecting sepsis-associated organisms directly from whole blood	17
Optimization of Manuka Honey microbubble particle structures for enhanced inhibition of Pseudomonas aeruginosa growth	17
Spectinomycin, gentamicin, and routine disc diffusion testing: An alternative for the treatment and monitoring of multidrug-resistant Neisseria gonorrhoeae?	16
Identification and characterization of cephalosporin-resistant Klebsiella pneumoniae by SERS: Insights into antimicrobial resistance patterns	16
Cryptosporidium occultus in disguise	16
Development of a three-panel multiplex real-time PCR assay for simultaneous detection of nine canine respiratory pathogens	16
Editorial Board	15
Non-amplification nucleic acid detection with thio-NAD cycling	15
Statistical optimization of amylase production from Bacillus amyloliquefaciens using agro-industrial waste (mango peels) under submerged fermentation by response surface methodology	15
A comparative study of a rapid phenotypic antimicrobial susceptibility testing system directly from positive blood cultures to the disk diffusion and VITEK 2 methods	15
A simple, sensitive, and specific method for the extraction and determination of thiamine and thiamine phosphate esters in fresh yeast biomass	15
The bacterial endotoxin test in the Chinese pharmacopoeia: A journey of international harmonization and national consideration	14
FastqOrienter: A Python utility for the automated orientation and quality diagnostics of paired-end Illumina metabarcoding reads	14
Machine learning powered profiling: Rapid identification of Klebsiella Pneumoniae drug resistance from MALDI-TOF MS	14
Development of polymerase chain reaction assays specific for individual pathogenic Aeromonas species	13
Editorial Board	13
Short communication: Investigating optimal laboratory growth conditions of Gracilibacillus halotolerans in media supplemented with salt	13
Innovative antigens for more accurate diagnosis of Q fever	13
Editorial Board	13
Electron microscopic observation of Mycobacterium avium subsp. paratuberculosis in cattle feces after a novel purification using liquid paraffin	12
Corrigendum to “Visualisation of Mycobacterium avium subsp. paratuberculosis in cultured cells, infected sheep and human tissue sections using fluorescent in situ hybridization (FISH)” [Journal of Mic	11
Novel artificial inoculation protocols in micro propagated and hardened tissue culture ginger plants (Zingiber officinale Rosc.): For early resistance screening against soil-borne pathogens	11
Development and validation of multiplex PCR based molecular serotyping of Salmonella serovars associated with poultry in India	11
Evaluation of the BL-RED (Beta-Lactamase Rapid Electrochemical Detection) test for the rapid detection of resistance to third-generation cephalosporins in Enterobacteriaceae	11
Editorial Board	10
Thermophilic bacteria mediated dye remediation in water and wastewater: Mechanistic and metabolic insights	10
A rapid in-lab toolbox for the discrimination of Vibrio natriegens and Escherichia coli cultures	10
An improved MTT colorimetric method for rapid viable bacteria counting	10
High-throughput screening assay for nitrification inhibitors and the discovery of goitrin as a biological nitrification inhibitor	10
A novel anti-C6 based approach for IgG avidity testing in Lyme borreliosis: A proof-of-concept study	10
A strategy to enhance detection of Corynebacterium in pus from human non-puerperal mastitis via pre-culture and extended incubation	10
CLI: A new protocol for the isolation of Lactic Acid Bacteria from complex plant samples	9
Improving high-throughput techniques for bacteriophage discovery in multi-well plates	9
Methylation-sensitive LAMP (MS-LAMP): assay design, readouts, and clinical translation in microbiology	9
Mobile carbapenemases in Gram-negative bacilli: Modification of a simplified phenotypic method for routine laboratory detection	9
Microbiologically influenced corrosion dynamics and technological innovations in monitoring and control	9
Molecular detection of “Candidatus Rickettsia tarasevichiae” by Loop-mediated Isothermal Amplification (LAMP) of the ompA gene	9
Microbial modified baslt fiber synergistic solidification of Pisha sandstone: Study on mechanical properties and mechanism	9
Editorial Board	9
Comparison of available methods to evaluate cefiderocol susceptibility in Acinetobacter spp	9
Rapid method for detection of Vibrio cholerae from drinking water with nanomaterials enhancing electrochemical biosensor	9
Performance of four bacterial cell counting apps for smartphones	9
Site-2 protease-like protein drives organic solvent tolerance in Rhodococcus ruber	9
Investigation of the potential of yeast strains for phytase biosynthesis in a two-step screening procedure	8
Classifying fungi biodiversity using hybrid transformer models	8
A new micro-agar dilution method to determine the minimum inhibitory concentration of essential oils against microorganisms	8
Revisiting gas-chromatography/mass-spectrometry molar response factors for quantitative analysis (FID or TIC) of glycosidic linkages in polysaccharides produced by oral bacterial biofilms	8
Pancreatic stone protein levels accurately predict severity in sepsis of various causes earlier than other biomarkers	8
Exploration of the optimum reaction conditions for the reverse transcription of mycoviral RNA from Lentinula edodes	8

Evaluation of cobas® Liat® Cdiff, STANDARD™ M10 C. difficile and Xpert® C. difficile BT assays for rapid detection of toxigenic Clostridioides difficile	8
Genotyping of Corynebacterium pseudotuberculosis isolates using PCR-based DNA fingerprinting methods	8
Editorial Board	8
Cell-free synthesis of the Salmonella specific broad host range bacteriophage, felixO1	8
A novel biosensing strategy for identification of three important bacteria causing meningitis	8
Long-term preservation and genetic stability of entomopathogenic fungal species	8
Disk-based method for rapid determination of primary antituberculosis drug susceptibility in Mycobacterium tuberculosis	8
Braided silk sutures coated with photoreduced silver nanoparticles for eradicating Staphylococcus aureus and Streptococcus mutans infections	8
A layered solid-state culture system for investigating the fungal growth and decay behaviour on the cellulosic substrate	8
Methodological aspects of investigating the resistome in pig farm environments	8
ClustFinder: A tool for threshold-delineated clustering of microbial isolates by pairwise genomic distance	8
Editorial Board	8
Development of a molecular marker for the Pi1 gene based on the association of the SNAP protocol with the touch-up gradient amplification method	8
Identification of genus Deinococcus strains by PCR detection using the gyrB gene and its extension to Bacteria domain	8
Application of audible acoustic stimulation to investigate growth responses in three Pleurotus species	8
Investigating E, E-farnesol production unleashed by an indigenous Saccharomyces cerevisiae isolated from baker's yeast under stationary culture	7
Host specific Eimeria genus diagnosis and qPCR development in Ovis aries and Capra hircus	7
Recovery of Escherichia coli and Salmonella enterica from long frozen rectal swabs using enrichment methods in a low-resource setting	7
The future in diagnostic tools for TB outbreaks: A review of the approaches with focus on LAMP and RPA diagnostics tests	7
Construction and optimization of a multiplex PMAxx-qPCR assay for viable Bacillus cereus and development of a detection kit	7
Identification of cry genes in Bacillus thuringiensis by multiplex real-time PCR	7
Simple cloning tricks to generate massive peptide libraries	7
Evaluation of the clinical sensitivity and specificity of the BD Max™ Enteric Bacterial Panel for molecular detection of pathogens for acute gastroenteritis in the Singaporean population	7
High-Resolution Melting (HRM) for rapid MLST analysis of Neisseria meningitidis	7
Engineering Citrobacter freundii using CRISPR/Cas9 system	7
Strain-level typing of Candida albicans and Saccharomyces cerevisiae using Fourier transform infrared spectroscopy and whole-genome sequencing	7
Integrated decentralized blood culture incubation: A step towards a 24/7 microbiology service?	7
Estimation of biosurfactant production parameters and yields without conducting additional experiments on a larger production scale	7
Crystal violet-based assay for the assessment of bacterial biofilm formation in medical tubing	7
A variety of simple and ultra-low-cost methods preparing SLiCE extracts and their application to DNA cloning	7
Corrigendum to <‘Evaluation of anti-LipL32 carbon nanotube immunofluorescence probe (carbo-lip) and comparison with MAT, IgM ELISA, IgM spot test and culture for early detection of leptospirosis at	7
Rapid qualitative identification and application of six common lactic acid bacteria based on surface enhanced Raman spectroscopy	7
Development of real-time PCR methods for the quantification of Methanoculleus, Methanosarcina and Methanobacterium in anaerobic digestion	7
Systematic review and critical reflection on the isolation and identification methods for spoilage associated bacteria in fresh marine fish	7
Microcalorimetric growth behavior of E. coli ATCC 25922 in an MCDSC	7
The performance of a Fully Automated Urine Particle Analyzer, Sysmex UF-5000, in detecting fastidious bacteria in urine samples	7
Inhibition of Pseudomonas aeruginosa with silver in a new synthetic medium: Investigation on the MIC, growth rate and lag-phase at the lower limit	7
Construction and application of MS2 bacteriophage virus-like particles for SARS-CoV-2 detection using a single-plasmid system	7
Ciliates as next-generation bioindicators in pollution-impacted freshwaters: Integrating community signatures with stress-response endpoints	7
Deciphering microbial diversity and predicting metabolic functionalities in fermented pigmented rice water using culture-independent characterization	6
Development of a novel visual isothermal amplification assay for rapid detection of Brucella spp.	6
Cell-free production of fluorescent proteins for the discovery of novel ribosome-targeting antibiotics	6
Coupon position does not affect Pseudomonas aeruginosa and Staphylococcus aureus biofilm densities in the CDC biofilm reactor	6
Differentiation of Salmonella vaccinated and infected animals by serological detection of antibody to T3SS effector SsaK in an indirect ELISA	6
A rapid MALDI Biotyper based approach for screening anovaginal colonization by Streptococcus agalactiae in pregnant women	6
Direct Xylella fastidiosa whole genome sequencing from various plant species using targeted enrichment	6
Microbial biofilms and nanoparticles synergistic interaction: A cutting-edge nano-bioremediation method for environmental cleanup and site restoration	6
In vivo Fusarium virulence and efficacy of voriconazole in a Galleria mellonella model of invasive fusariosis	6
A strip-based assay for detection of CrfA enzyme activity to differentiate Mycobacterium tuberculosis and non-tuberculous mycobacteria	6
A comparative study of invA and ttrC-based real-time PCR assays for the genus-specific molecular identification of Salmonella enterica	6
Assessment of the capacity of Whatman filter papers as support to store stools for the molecular diagnostic testing of soil-transmitted helminthiasis	6
Adapting a 96-well liquid culture assay to a colonial growth confirmation assay utilizing a 3D printed guide-frame system for a 96-well replicator	6
Comparison of molecular serotyping methods for Actinobacillus pleuropneumoniae and analysis of atypical serotypes detected in routine diagnostics	6
Vaginal microbe media (VMM): a novel medium to culture Lactobacillus iners and other fastidious vaginal bacteria	6
Broth microdilution protocol for determining antimicrobial susceptibility of Legionella pneumophila to clinically relevant antimicrobials	6
Insight into the biotechnology potential of Alicyclobacillus tolerans from whole genome sequence analysis and genome-scale metabolic network modeling.	6
Production optimization and characterization of amylase from Bacillus subtilis strain 2i under submerged fermentation	6
Transcriptomic insights into biofilm dynamics and therapeutic targets in chronic wound infections (MIMET 107281)	6
Phenotypic detection of carbapenemase production in carbapenem-resistant isolates with the rapid carbapenemase detection method (rCDM)	6
Editorial Board	6
Quantification of anaerobic methanotrophic archaea Candidatus Methanoperedens of the ANME-2d cluster using new PCR primers	6
Application of flow cytometry for rapid, high-throughput, multiparametric analysis of environmental microbiomes	6
Advances in molecular diagnostics of Neisseria gonorrhoeae	6
Deciphering the directed iron-stress regulatory network of Synechocystis sp. PCC 6803 reveals novel master regulators	6
Rapid counting of Kazachstania humilis and Saccharomyces cerevisiae in sourdough by deep learning-based classifier	5
Editorial Board	5
Detection of viable and VBNC Salmonella in retail meat using optimized PMAxx real-time PCR	5
A new plate-hanging method for biofilm quantification and its application to evaluate the role of surface hydrophobicity	5
A practical method for gas changing time estimation using a simple gas-liquid mass transfer model	5
Bacterial growth comparison of vaccine and non-vaccine type Streptococcus pneumoniae in different enrichment broths	5
Fungal false positive in BioFire® FilmArray® analysis for bloodstream infection	5
Comparison of agar-based and checkerboard methods to assess phage–antimicrobial synergy in Pseudomonas aeruginosa	5
I-dOne: A diagnostic tool in the field of identification of clinically relevant microbial strains	5
Follow-up of solid-state fungal wood pretreatment by a novel near-infrared spectroscopy-based lignin calibration model	5
Efficiency of CRISPR-Cas9 genetic engineering in Escherichia coli BL21 is impaired by lack of Lon protease	5
Application of a rapid and sensitive RPA-CRISPR/Cas12a assay for BCSP31-based Brucella detection	5
Electrochemical based quantification of bacterial growth in media using square wave voltammetry and low cost screen printed electrodes	5
Editorial Board	5
Sequencing on the edge: Tools and techniques for sequencing low biomass isolates from unicellular eukaryotic parasites and other challenging samples	5
Validation of pleural fluid group A Streptococcus and Staphylococcus aureus PCR assays and their potential clinical impact in children with complicated pneumonia	5

Comparative evaluation of beetroot and Mangosteen Peel extracts as natural alternatives to malachite green in the Kato–Katz method	5
Standardized ready-to-use laboratory protocol to isolate primary human wound associated fibroblasts from infected wound samples for clinical applications	5
Biomass and metabolic activity staining biofilm techniques are not reliable enough to be used in microbiology laboratories	5
A new duplex qPCR-based method to quantify Mycoplasma mycoides in complex cell culture systems and host tissues	5
Effects of microbial inoculants on soil microbial communities and enhancement of tomato yield	5
A replica plating method for efficient, high-throughput screening of antibiotic gene clusters in bacteria uncovers a holomycin-like cluster in the clinical isolate, Pantoea agglomerans 20KB447973	5
Comparing DNA isolation and sequencing strategies for 16S rRNA gene amplicon analysis in biofilm containing environments	5
Novel standard biodegradation test for synthetic phosphonates	5
Cost-effective immobilization of Chaetomium erraticum dextranase on c-MWCNT	5
Evaluation of a nucleic acid amplification system, GENECUBE, for rapid detection of staphylococcal nuc and mecA in blood culture samples	5
Prospective study on combined use of Sabouraud dextrose agar and blood agar for improved recovery of etiological agents in mycotic and Pythium keratitis	5
Design and validation of universal and taxon-specific 16S rRNA qPCR primers for detection of freshwater harmful algal bloom-forming cyanobacteria	5
Identification of bacterial infection types in decomposition stages at various temperatures using pathology images and artificial intelligence algorithms	5
The implications of quorum sensing inhibition in bacterial antibiotic resistance- with a special focus on aquaculture	5
Evaluation of IgG anti-L. tropica antibody response as a biomarker for cutaneous leishmaniasis using ELISA in endemic regions of Pakistan	5
Analytical techniques for laboratory testing of HIV: a systematic review	5
Curing of common plasmids in gram-negative bacteria using a Cas9-based conjugative vector	5
Subtractive genomics approach: A guide to unveiling therapeutic targets across pathogens	5
Quantitative investigation of the bacterial content of periodontal abscess samples by real-time PCR	5
Effects of primers, PCR approaches and sample preservation methods on diversity studies of myxobacteria	4
Novel method for screening probiotic candidates tolerant to human gastrointestinal stress	4
Understanding the reaction balances behind the viability PCR protocols based on photoreactive dyes	4
Improvement of transformation efficiency in hypermucoviscous Klebsiella pneumoniae using citric acid	4
Development of a closed-tube, calcein-based loop-mediated isothermal amplification assay to detect Salmonella spp. in raw meat samples	4
Improvement of the silver staining method for bacterial flagella	4
A workflow for selective isolation of bacterial RNA from Streptococcus agalactiae during in vivo infection	4
Anionic nanocellulose as competing agent in microbial DNA extraction from mine process samples	4
Studying the pre-implantation uterine microbiota in cattle using transabdominal laparoscopic low-volume lavage: Aiming for zero-contamination	4
DSE inoculation improves phosphorus efficiency and licorice's medicinal quality under various phosphorus sources	4
Characterization of circulating Mycoplasma hyopneumoniae variants in the Midwestern United States using Multiple-Locus Variable number tandem repeat Analysis and P146 gene sequencing	4
Rapid screening of primary and rationally synthesized anti-mycobacterial compounds in macrophage using double recombinant M. bovis BCG strain	4
Leveraging artificial intelligence in vaccine development: A narrative review	4
Current advancements in nanoparticles for vaccines and drug delivery for the treatment of tuberculosis	4
Development and validation of a multi-target TaqMan qPCR method for detection of Borrelia burgdorferi sensu lato	4
A new PMA-qPCR method for rapid and accurate detection of viable bacteria and spores of marine-derived Bacillus velezensis B-9987	4
Determination of limit of detection and relative limit of detection of Salmonella in raw pet food matrices using Salmonella bacteriological analytical manual methods	4
Single primer site-specific nested PCR for accurate and rapid genome-walking	4
Improving the identification of pneumonia pathogens by using the real-time polymerase chain reaction (qPCR) alongside culture methods	4
Rapid identification of Salmonella serovars Enteritidis and Typhimurium using whole cell matrix assisted laser desorption ionization – Time of flight mass spectrometry (MALDI-TOF MS) coupled with mult	4
Development of a rapid molecular assay for specific identification of Mycobacterium avium and Mycobacterium intracellulare	4
Occurrence of Rhodococcus sp. RR1 prmA and Rhodococcus jostii RHA1 prmA across microbial communities and their enumeration during 1,4-dioxane biodegradation	4
High-throughput characterization of the filamentous cyanobacterium Anabaena sp. using flow cytometry	4
Alternative protocol leading to rapid identification of Actinomycetes isolated from Algerian desertic soil by MALDI-TOF mass spectrometry	4
Contribution to optimization and standardization of antibacterial assays with silver nanoparticles: the culture medium and their aggregation	4
Rapid quantification of viable probiotic Lactobacillus species in Indian fermented dairy products using propidium monoazide-real time PCR assay	4
Enhancing sensitivity of qPCR assays targeting Streptococcus pneumoniae, Neisseria meningitidis and Haemophilus influenzae by using a mutant Taq DNA polymerase	4
A rapid and visual detection for canine Adenovirus-2 using CRISPR-Cas13a-based SHERLOCK technology	4
MobiRes: An integrative pipeline for resistome risk prediction through mobilome profiling	4
Comparative analysis of diagnostic assays for scrub typhus: Unveiling enhanced approaches for accurate detection	4
New vectors and optimal conditions for allelic exchange in hypervirulent Klebsiella pneumoniae	4
Leptospiral sphingomyelinase Sph2 as a potential biomarker for diagnosis of leptospirosis	4
Development of a microplate absorbance assay for assessing fungicide sensitivity of filamentous fungi and comparison to an amended agar assay	4
Development and validation of a VirB12-based indirect ELISA for differentiating Brucella abortus infection from A19-ΔVirB12 vaccination	4