OOIR: Observatory of International Research

Papers

(The TQCC of Plant Molecular Biology is 9. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
GmNAC06, a NAC domain transcription factor enhances salt stress tolerance in soybean	117
sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks	92
Different regulatory mechanisms of plant hormones in the ripening of climacteric and non-climacteric fruits: a review	75
Insight into melatonin-mediated response and signaling in the regulation of plant defense under biotic stress	67
The interplay between ABA/ethylene and NAC TFs in tomato fruit ripening: a review	67
The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula	42
How salt stress-responsive proteins regulate plant adaptation to saline conditions	39
The interaction of MYB, bHLH and WD40 transcription factors in red pear (Pyrus pyrifolia) peel	38
From source to sink: mechanistic insight of photoassimilates synthesis and partitioning under high temperature and elevated [CO2]	37
Genome-wide identification and characterization of long non-coding RNAs involved in flag leaf senescence of rice	34
The influence of endophytes on rice fitness under environmental stresses	33
Cell wall integrity regulation across plant species	32
Three novel transcription factors involved in cannabinoid biosynthesis in Cannabis sativa L.	31
Structure, function, and evolution of plant ADP-glucose pyrophosphorylase	30
Fundamental mechanisms of the stem cell regulation in land plants: lesson from shoot apical cells in bryophytes	29
Improving rice eating and cooking quality by coordinated expression of the major starch synthesis-related genes, SSII and Wx, in endosperm	29
Phytohormone biosynthesis and signaling pathways of mosses	29
HY5 and ABI5 transcription factors physically interact to fine tune light and ABA signaling in Arabidopsis	29
The rice wound-inducible transcription factor RERJ1 sharing same signal transduction pathway with OsMYC2 is necessary for defense response to herbivory and bacterial blight	27
The Ca2+ sensor proteins CML37 and CML42 antagonistically regulate plant stress responses by altering phytohormone signals	26
Two B-box domain proteins, BBX28 and BBX29, regulate flowering time at low ambient temperature in Arabidopsis	26
The dual function of elicitors and effectors from insects: reviewing the ‘arms race’ against plant defenses	25
A coumarin exudation pathway mitigates arbuscular mycorrhizal incompatibility in Arabidopsis thaliana	25
StCaM2, a calcium binding protein, alleviates negative effects of salinity and drought stress in tobacco	25
On the cluster structure of amylopectin	25

SiMADS34, an E-class MADS-box transcription factor, regulates inflorescence architecture and grain yield in Setaria italica	24
The lincRNA XH123 is involved in cotton cold-stress regulation	24
Acylsugars protect Nicotiana benthamiana against insect herbivory and desiccation	23
OsNAC109 regulates senescence, growth and development by altering the expression of senescence- and phytohormone-associated genes in rice	22
OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	22
The CBM48 domain-containing protein FLO6 regulates starch synthesis by interacting with SSIVb and GBSS in rice	22
Genome-wide identification and classification of Lipoxygenase gene family and their roles in sorghum-aphid interaction	21
Cassava mosaic disease and its management in Southeast Asia	21
CIN-like TCP13 is essential for plant growth regulation under dehydration stress	20
NtCycB2 negatively regulates tobacco glandular trichome formation, exudate accumulation, and aphid resistance	20
Elucidating the functional role of heat stress transcription factor A6b (TaHsfA6b) in linking heat stress response and the unfolded protein response in wheat	20
Revealing floral metabolite network in tuberose that underpins scent volatiles synthesis, storage and emission	19
Root engineering in maize by increasing cytokinin degradation causes enhanced root growth and leaf mineral enrichment	19
Ethephon induces coordinated ripening acceleration and divergent coloration responses in fig (Ficus carica L.) flowers and receptacles	19
Transcriptional profiling reveals conserved and species-specific plant defense responses during the interaction of Physcomitrium patens with Botrytis cinerea	19
Molecular and biochemical characterization of two 4-coumarate: CoA ligase genes in tea plant (Camellia sinensis)	18
A type-2C protein phosphatase (GhDRP1) participates in cotton (Gossypium hirsutum) response to drought stress	18
Plant responses to high temperature: a view from pre-mRNA alternative splicing	18
Heightened miR6024-NLR interactions facilitate necrotrophic pathogenesis in tomato	18
High-LD SNP markers exhibiting pleiotropic effects on salt tolerance at germination and seedlings stages in spring wheat	17
Genome-wide characterization of the TALE homeodomain family and the KNOX-BLH interaction network in tomato	17
Insight into early diversification of leucine-rich repeat receptor-like kinases provided by the sequenced moss and hornwort genomes	17
T-DNA regions from 350 Agrobacterium genomes: maps and phylogeny	17
Nod factor perception: an integrative view of molecular communication during legume symbiosis	17
Opportunities and challenges with CRISPR-Cas mediated homologous recombination based precise editing in plants and animals	17
Crocus transcription factors CstMYB1 and CstMYB1R2 modulate apocarotenoid metabolism by regulating carotenogenic genes	16
Optimum root zone temperature of photosynthesis and plant growth depends on air temperature in lettuce plants	16
To have or not to have: expression of amino acid transporters during pathogen infection	16
Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.)	16
Editing of the starch branching enzyme gene SBE2 generates high-amylose storage roots in cassava	16
CmMYB9a activates floral coloration by positively regulating anthocyanin biosynthesis in chrysanthemum	16
Role of jasmonate signaling in rice resistance to the leaf folder Cnaphalocrocis medinalis	16
PpGRAS12 acts as a positive regulator of meristem formation in Physcomitrium patens	15
Overexpression of nicotinamidase 3 (NIC3) gene and the exogenous application of nicotinic acid (NA) enhance drought tolerance and increase biomass in Arabidopsis	15
Integrative transcriptome and proteome analyses provide deep insights into the molecular mechanism of salt tolerance in Limonium bicolor	14
Potent inhibition of TCP transcription factors by miR319 ensures proper root growth in Arabidopsis	14
Chitooligosaccharide elicitor and oxylipins synergistically elevate phytoalexin production in rice	14
Suppressed expression of starch branching enzyme 1 and 2 increases resistant starch and amylose content and modifies amylopectin structure in cassava	14
Citrus NIP5;1 aquaporin regulates cell membrane water permeability and alters PIPs plasma membrane localization	13
Plastid genome evolution in Amazonian açaí palm (Euterpe oleracea Mart.) and Atlantic forest açaí palm (Euterpe edulis Mart.)	13
Using interdisciplinary, phylogeny-guided approaches to understand the evolution of plant metabolism	13
Calmodulin7: recent insights into emerging roles in plant development and stress	13
Molecular response and evolution of plant anion transport systems to abiotic stress	13
Current status and impending progress for cassava structural genomics	13
Regulatory mechanism of GA3 on tuber growth by DELLA-dependent pathway in yam (Dioscorea opposita)	12
Arabidopsis GELP7 functions as a plasma membrane-localized acetyl xylan esterase, and its overexpression improves saccharification efficiency	12
Relative importance of branching enzyme isoforms in determining starch fine structure and physicochemical properties of indica rice	12
Anthocyanins and reactive oxygen species: a team of rivals regulating plant development?	12
Quantitative cell biology of tip growth in moss	12
Modulation of GmFAD3 expression alters abiotic stress responses in soybean	12

Possible role of small secreted peptides (SSPs) in immune signaling in bryophytes	12
Combined transcriptome and proteome analysis provides insights into anthocyanin accumulation in the leaves of red-leaved poplars	12
Tomato leaves under stress: a comparison of stress response to mild abiotic stress between a cultivated and a wild tomato species	12
Combination analysis of single-molecule long-read and Illumina sequencing provides insights into the anthocyanin accumulation mechanism in an ornamental grass, Pennisetum setaceum cv. Rubrum	12
The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings	11
Anthocyanins identification and transcriptional regulation of anthocyanin biosynthesis in purple Brassica napus	11
Transcriptome and DNA methylome analyses provide insight into the heterosis in flag leaf of inter-subspecific hybrid rice	11
Heat stress during grain filling regulates seed germination through alterations of DNA methylation in barley (Hordeum vulgare L.)	11
CRISPR gene editing of major domestication traits accelerating breeding for Solanaceae crops improvement	11
Role of ethylene in the regulatory mechanism underlying the abortion of ovules after fertilization in Xanthoceras sorbifolium	11
Promoter profiling of Arabidopsis amino acid transporters: clues for improving crops	11
Into a dilemma of plants: the antagonism between chemical defenses and growth	11
Metabolomic profiling of wheat genotypes resistant and susceptible to root-lesion nematode Pratylenchus thornei	10
Multiplex CRISPR-Cas9 mutagenesis of the phytochrome gene family in Physcomitrium (Physcomitrella) patens	10
Characterizing serotonin biosynthesis in Setaria viridis leaves and its effect on aphids	10
Biased allelic expression in tissues of F1 hybrids between tropical and temperate lotus (Nelumbo nuicfera)	10
Ocimum sanctum, OscWRKY1, regulates phenylpropanoid pathway genes and promotes resistance to pathogen infection in Arabidopsis	10
Construction of two regulatory networks related to salt stress and lignocellulosic synthesis under salt stress based on a Populus davidiana × P. bolleana transcriptome analysis	10
TOPLESS in the regulation of plant immunity	10
Transcriptional loss of domestication-driven cytoskeletal GhPRF1 gene causes defective floral and fiber development in cotton (Gossypium)	10
SCARECROW-LIKE3 regulates the transcription of gibberellin-related genes by acting as a transcriptional co-repressor of GAI-ASSOCIATED FACTOR1	10
Phytochelatin-mediated metal detoxification pathway is crucial for an organomercurial phenylmercury tolerance in Arabidopsis	10
1-Octen-3-ol is formed from its primeveroside after mechanical wounding of soybean leaves	10
Expansion of the evolutionarily conserved network of J-domain proteins in the Arabidopsis mitochondrial import complex	10
Kleisin NSE4 of the SMC5/6 complex is necessary for DNA double strand break repair, but not for recovery from DNA damage in Physcomitrella (Physcomitrium patens)	10
Ethanol induces heat tolerance in plants by stimulating unfolded protein response	10
Enhanced glutathione content improves lateral root development and grain yield in rice plants	9
Active-type starch synthase (SS) IIa from indica rice partially complements the sugary-1 phenotype in japonica rice endosperm	9
Multiple pathways mediate chloroplast singlet oxygen stress signaling	9
The transcriptome landscapes of citrus leaf in different developmental stages	9
Natural population re-sequencing detects the genetic basis of local adaptation to low temperature in a woody plant	9
Transcriptome landscape of early inflorescence developmental stages identifies key flowering time regulators in chickpea	9
DNA fingerprinting reveals varietal composition of Vietnamese cassava germplasm (Manihot esculenta Crantz) from farmers’ field and genebank collections	9
Analysis of mitochondrial recombination in the male sterile Brassica juncea cybrid Og1 and identification of the molecular basis of fertility reversion	9
Transcriptome analysis of a near-isogenic line and its recurrent parent reveals the role of Pup1 QTL in phosphorus deficiency tolerance of rice at tillering stage	9
H2O2 priming induces proteomic responses to defense against salt stress in maize	9
Computational identification of ubiquitination sites in Arabidopsis thaliana using convolutional neural networks	9
Association of gene expression with syringyl to guaiacyl ratio in sugarcane lignin	9
Multiple and integrated functions of floral C-class MADS-box genes in flower and fruit development of Physalis floridana	9