Plant Molecular Biology

Article	Citations
GmNAC06, a NAC domain transcription factor enhances salt stress tolerance in soybean	117
sgRNACNN: identifying sgRNA on-target activity in four crops using ensembles of convolutional neural networks	92
Different regulatory mechanisms of plant hormones in the ripening of climacteric and non-climacteric fruits: a review	75
Insight into melatonin-mediated response and signaling in the regulation of plant defense under biotic stress	67
The interplay between ABA/ethylene and NAC TFs in tomato fruit ripening: a review	67
The R2R3-MYB transcription factor MtMYB134 orchestrates flavonol biosynthesis in Medicago truncatula	42
How salt stress-responsive proteins regulate plant adaptation to saline conditions	39
The interaction of MYB, bHLH and WD40 transcription factors in red pear (Pyrus pyrifolia) peel	38
From source to sink: mechanistic insight of photoassimilates synthesis and partitioning under high temperature and elevated [CO2]	37
Genome-wide identification and characterization of long non-coding RNAs involved in flag leaf senescence of rice	34
The influence of endophytes on rice fitness under environmental stresses	33
Cell wall integrity regulation across plant species	32
Three novel transcription factors involved in cannabinoid biosynthesis in Cannabis sativa L.	31
Structure, function, and evolution of plant ADP-glucose pyrophosphorylase	30
Fundamental mechanisms of the stem cell regulation in land plants: lesson from shoot apical cells in bryophytes	29
Improving rice eating and cooking quality by coordinated expression of the major starch synthesis-related genes, SSII and Wx, in endosperm	29
Phytohormone biosynthesis and signaling pathways of mosses	29
HY5 and ABI5 transcription factors physically interact to fine tune light and ABA signaling in Arabidopsis	29
The rice wound-inducible transcription factor RERJ1 sharing same signal transduction pathway with OsMYC2 is necessary for defense response to herbivory and bacterial blight	27
Two B-box domain proteins, BBX28 and BBX29, regulate flowering time at low ambient temperature in Arabidopsis	26
The Ca2+ sensor proteins CML37 and CML42 antagonistically regulate plant stress responses by altering phytohormone signals	26
A coumarin exudation pathway mitigates arbuscular mycorrhizal incompatibility in Arabidopsis thaliana	25
StCaM2, a calcium binding protein, alleviates negative effects of salinity and drought stress in tobacco	25
On the cluster structure of amylopectin	25
The dual function of elicitors and effectors from insects: reviewing the ‘arms race’ against plant defenses	25

The lincRNA XH123 is involved in cotton cold-stress regulation	24
SiMADS34, an E-class MADS-box transcription factor, regulates inflorescence architecture and grain yield in Setaria italica	24
Acylsugars protect Nicotiana benthamiana against insect herbivory and desiccation	23
OsPUB41, a U-box E3 ubiquitin ligase, acts as a negative regulator of drought stress response in rice (Oryza Sativa L.)	22
The CBM48 domain-containing protein FLO6 regulates starch synthesis by interacting with SSIVb and GBSS in rice	22
OsNAC109 regulates senescence, growth and development by altering the expression of senescence- and phytohormone-associated genes in rice	22
Cassava mosaic disease and its management in Southeast Asia	21
Genome-wide identification and classification of Lipoxygenase gene family and their roles in sorghum-aphid interaction	21
NtCycB2 negatively regulates tobacco glandular trichome formation, exudate accumulation, and aphid resistance	20
Elucidating the functional role of heat stress transcription factor A6b (TaHsfA6b) in linking heat stress response and the unfolded protein response in wheat	20
CIN-like TCP13 is essential for plant growth regulation under dehydration stress	20
Root engineering in maize by increasing cytokinin degradation causes enhanced root growth and leaf mineral enrichment	19
Ethephon induces coordinated ripening acceleration and divergent coloration responses in fig (Ficus carica L.) flowers and receptacles	19
Transcriptional profiling reveals conserved and species-specific plant defense responses during the interaction of Physcomitrium patens with Botrytis cinerea	19
Revealing floral metabolite network in tuberose that underpins scent volatiles synthesis, storage and emission	19
A type-2C protein phosphatase (GhDRP1) participates in cotton (Gossypium hirsutum) response to drought stress	18
Plant responses to high temperature: a view from pre-mRNA alternative splicing	18
Heightened miR6024-NLR interactions facilitate necrotrophic pathogenesis in tomato	18
Molecular and biochemical characterization of two 4-coumarate: CoA ligase genes in tea plant (Camellia sinensis)	18
High-LD SNP markers exhibiting pleiotropic effects on salt tolerance at germination and seedlings stages in spring wheat	17
Genome-wide characterization of the TALE homeodomain family and the KNOX-BLH interaction network in tomato	17
Insight into early diversification of leucine-rich repeat receptor-like kinases provided by the sequenced moss and hornwort genomes	17
T-DNA regions from 350 Agrobacterium genomes: maps and phylogeny	17
Nod factor perception: an integrative view of molecular communication during legume symbiosis	17
Opportunities and challenges with CRISPR-Cas mediated homologous recombination based precise editing in plants and animals	17
To have or not to have: expression of amino acid transporters during pathogen infection	16
Decreased grain size1, a C3HC4-type RING protein, influences grain size in rice (Oryza sativa L.)	16
Editing of the starch branching enzyme gene SBE2 generates high-amylose storage roots in cassava	16
CmMYB9a activates floral coloration by positively regulating anthocyanin biosynthesis in chrysanthemum	16
Role of jasmonate signaling in rice resistance to the leaf folder Cnaphalocrocis medinalis	16
Crocus transcription factors CstMYB1 and CstMYB1R2 modulate apocarotenoid metabolism by regulating carotenogenic genes	16
Optimum root zone temperature of photosynthesis and plant growth depends on air temperature in lettuce plants	16
Overexpression of nicotinamidase 3 (NIC3) gene and the exogenous application of nicotinic acid (NA) enhance drought tolerance and increase biomass in Arabidopsis	15
PpGRAS12 acts as a positive regulator of meristem formation in Physcomitrium patens	15
Potent inhibition of TCP transcription factors by miR319 ensures proper root growth in Arabidopsis	14
Chitooligosaccharide elicitor and oxylipins synergistically elevate phytoalexin production in rice	14
Suppressed expression of starch branching enzyme 1 and 2 increases resistant starch and amylose content and modifies amylopectin structure in cassava	14
Integrative transcriptome and proteome analyses provide deep insights into the molecular mechanism of salt tolerance in Limonium bicolor	14
Using interdisciplinary, phylogeny-guided approaches to understand the evolution of plant metabolism	13
Calmodulin7: recent insights into emerging roles in plant development and stress	13
Molecular response and evolution of plant anion transport systems to abiotic stress	13
Current status and impending progress for cassava structural genomics	13
Citrus NIP5;1 aquaporin regulates cell membrane water permeability and alters PIPs plasma membrane localization	13
Plastid genome evolution in Amazonian açaí palm (Euterpe oleracea Mart.) and Atlantic forest açaí palm (Euterpe edulis Mart.)	13
Relative importance of branching enzyme isoforms in determining starch fine structure and physicochemical properties of indica rice	12
Anthocyanins and reactive oxygen species: a team of rivals regulating plant development?	12
Quantitative cell biology of tip growth in moss	12
Modulation of GmFAD3 expression alters abiotic stress responses in soybean	12
Possible role of small secreted peptides (SSPs) in immune signaling in bryophytes	12
Combined transcriptome and proteome analysis provides insights into anthocyanin accumulation in the leaves of red-leaved poplars	12

Tomato leaves under stress: a comparison of stress response to mild abiotic stress between a cultivated and a wild tomato species	12
Combination analysis of single-molecule long-read and Illumina sequencing provides insights into the anthocyanin accumulation mechanism in an ornamental grass, Pennisetum setaceum cv. Rubrum	12
Regulatory mechanism of GA3 on tuber growth by DELLA-dependent pathway in yam (Dioscorea opposita)	12
Arabidopsis GELP7 functions as a plasma membrane-localized acetyl xylan esterase, and its overexpression improves saccharification efficiency	12
Transcriptome and DNA methylome analyses provide insight into the heterosis in flag leaf of inter-subspecific hybrid rice	11
Heat stress during grain filling regulates seed germination through alterations of DNA methylation in barley (Hordeum vulgare L.)	11
CRISPR gene editing of major domestication traits accelerating breeding for Solanaceae crops improvement	11
Role of ethylene in the regulatory mechanism underlying the abortion of ovules after fertilization in Xanthoceras sorbifolium	11
Promoter profiling of Arabidopsis amino acid transporters: clues for improving crops	11
Into a dilemma of plants: the antagonism between chemical defenses and growth	11
The lipoxygenase OsLOX10 affects seed longevity and resistance to saline-alkaline stress during rice seedlings	11
Anthocyanins identification and transcriptional regulation of anthocyanin biosynthesis in purple Brassica napus	11
1-Octen-3-ol is formed from its primeveroside after mechanical wounding of soybean leaves	10
Expansion of the evolutionarily conserved network of J-domain proteins in the Arabidopsis mitochondrial import complex	10
Kleisin NSE4 of the SMC5/6 complex is necessary for DNA double strand break repair, but not for recovery from DNA damage in Physcomitrella (Physcomitrium patens)	10
Ethanol induces heat tolerance in plants by stimulating unfolded protein response	10
Metabolomic profiling of wheat genotypes resistant and susceptible to root-lesion nematode Pratylenchus thornei	10
Multiplex CRISPR-Cas9 mutagenesis of the phytochrome gene family in Physcomitrium (Physcomitrella) patens	10
Characterizing serotonin biosynthesis in Setaria viridis leaves and its effect on aphids	10
Biased allelic expression in tissues of F1 hybrids between tropical and temperate lotus (Nelumbo nuicfera)	10
Phytochelatin-mediated metal detoxification pathway is crucial for an organomercurial phenylmercury tolerance in Arabidopsis	10
Ocimum sanctum, OscWRKY1, regulates phenylpropanoid pathway genes and promotes resistance to pathogen infection in Arabidopsis	10
Construction of two regulatory networks related to salt stress and lignocellulosic synthesis under salt stress based on a Populus davidiana × P. bolleana transcriptome analysis	10
TOPLESS in the regulation of plant immunity	10
Transcriptional loss of domestication-driven cytoskeletal GhPRF1 gene causes defective floral and fiber development in cotton (Gossypium)	10
SCARECROW-LIKE3 regulates the transcription of gibberellin-related genes by acting as a transcriptional co-repressor of GAI-ASSOCIATED FACTOR1	10
Computational identification of ubiquitination sites in Arabidopsis thaliana using convolutional neural networks	9
Association of gene expression with syringyl to guaiacyl ratio in sugarcane lignin	9
Multiple and integrated functions of floral C-class MADS-box genes in flower and fruit development of Physalis floridana	9
Enhanced glutathione content improves lateral root development and grain yield in rice plants	9
Active-type starch synthase (SS) IIa from indica rice partially complements the sugary-1 phenotype in japonica rice endosperm	9
Multiple pathways mediate chloroplast singlet oxygen stress signaling	9
The transcriptome landscapes of citrus leaf in different developmental stages	9
Natural population re-sequencing detects the genetic basis of local adaptation to low temperature in a woody plant	9
Transcriptome landscape of early inflorescence developmental stages identifies key flowering time regulators in chickpea	9
DNA fingerprinting reveals varietal composition of Vietnamese cassava germplasm (Manihot esculenta Crantz) from farmers’ field and genebank collections	9
Analysis of mitochondrial recombination in the male sterile Brassica juncea cybrid Og1 and identification of the molecular basis of fertility reversion	9
Transcriptome analysis of a near-isogenic line and its recurrent parent reveals the role of Pup1 QTL in phosphorus deficiency tolerance of rice at tillering stage	9
H2O2 priming induces proteomic responses to defense against salt stress in maize	9
Rapid sequence evolution is associated with genetic incompatibilities in the plastid Clp complex	8
Characterization of Cry2 genes (CRY2a and CRY2b) of B. napus and comparative analysis of BnCRY1 and BnCRY2a in regulating seedling photomorphogenesis	8
Tubby-like proteins (TLPs) transcription factor in different regulatory mechanism in plants: a review	8
Large-scale comparative transcriptomic analysis of temperature-responsive genes in Arabidopsis thaliana	8
BcWRKY1 confers salt sensitivity via inhibiting Reactive oxygen species scavenging	8
The stress induced caleosin, RD20/CLO3, acts as a negative regulator of GPA1 in Arabidopsis	8
How do emerging long-read sequencing technologies function in transforming the plant pathology research landscape?	8
The first homosporous lycophyte genome revealed the association between the recent dynamic accumulation of LTR-RTs and genome size variation	8
Evolutionary history of the mediterranean Pinus halepensis-brutia species complex using gene-resequencing and transcriptomic approaches	8
Life, death and resurrection of plant GPCRs	8
How plants grow under gravity conditions besides 1 g: perspectives from hypergravity and space experiments that employ bryophytes as a model organism	8
DNA-binding properties of the MADS-domain transcription factor SEPALLATA3 and mutant variants characterized by SELEX-seq	8
Protein targeting to starch 1, a functional protein of starch biosynthesis in wheat (Triticum aestivum L.)	8
Two trehalase isoforms, produced from a single transcript, regulate drought stress tolerance in Arabidopsis thaliana	8
A de novo gene originating from the mitochondria controls floral transition in Arabidopsis thaliana	8
Completing the TRB family: newly characterized members show ancient evolutionary origins and distinct localization, yet similar interactions	7
Mutation in BEIIb mitigates the negative effect of the mutation in ISA1 on grain filling and amyloplast formation in rice	7
High temporal-resolution transcriptome landscapes of maize embryo sac and ovule during early seed development	7
Pseudocrossidium replicatum (Taylor) R.H. Zander is a fully desiccation-tolerant moss that expresses an inducible molecular mechanism in response to severe abiotic stress	7
Ethanol treatment enhances drought stress avoidance in cassava (Manihot esculenta Crantz)	7
CBM20CP, a novel functional protein of starch metabolism in green algae	7
A scheme for C4 evolution derived from a comparative analysis of the closely related C3, C3–C4 intermediate, C4-like, and C4 species in the genus Flaveria	7
Starch synthases SSIIa and GBSSI control starch structure but do not determine starch granule morphology in the absence of SSIIIa and SSIVb	7
Genome-wide identification and in-silico expression analysis of CCO gene family in sunflower (Helianthus annuus) against abiotic stress	7
Elucidating the genetic architecture controlling antioxidant status and ionic balance in barley under salt stress	7
Genome-wide analysis of the rose (Rosa chinensis) NAC family and characterization of RcNAC091	7
Early sensing of phosphate deprivation triggers the formation of extra root cap cell layers via SOMBRERO through a process antagonized by auxin signaling	7
Transgenerational effects of elevated CO2 on rice photosynthesis and grain yield	7
Photosynthetic traits of Australian wild rice (Oryza australiensis) confer tolerance to extreme daytime temperatures	7
AUXIN RESPONSE FACTOR 16 (StARF16) regulates defense gene StNPR1 upon infection with necrotrophic pathogen in potato	7
DELLA-GAF1 complex is involved in tissue-specific expression and gibberellin feedback regulation of GA20ox1 in Arabidopsis	7
Changes in fine structure of amylopectin and internal structures of starch granules in developing endosperms and culms caused by starch branching enzyme mutations of japonica rice	7
Genetic divergence in transcriptional regulators of defense metabolism: insight into plant domestication and improvement	7
The complete plastid genome sequence of the enigmatic moss, Takakia lepidozioides (Takakiopsida, Bryophyta): evolutionary perspectives on the largest collection of genes in mosses and the intensive RN	7
Expression of peat moss VASCULAR RELATED NAC-DOMAIN homologs in Nicotiana benthamiana leaf cells induces ectopic secondary wall formation	7
A mutation in Arabidopsis SAL1 alters its in vitro activity against IP3 and delays developmental leaf senescence in association with lower ROS levels	6
Cytonuclear coevolution in a holoparasitic plant with highly disparate organellar genomes	6
Molecular mechanism of different flower color formation of Cymbidium ensifolium	6
A wheat WRKY transcription factor TaWRKY17 enhances tolerance to salt stress in transgenic Arabidopsis and wheat plant	6
The interaction between exogenous IBA with sucrose, light and ventilation alters the expression of ARFs and Aux/IAA genes in Carica papaya plantlets	6
Genetic diversity and gene expression diversity shape the adaptive pattern of the aquatic plant Batrachium bungei along an altitudinal gradient on the Qinghai–Tibet plateau	6

In Arabidopsis thaliana mitochondria 5′ end polymorphisms of nad4L-atp4 and nad3-rps12 transcripts are linked to RNA PROCESSING FACTORs 1 and 8	6
Protein kinase PpCIPK1 modulates plant salt tolerance in Physcomitrella patens	6
Loss-of-function mutations in WRKY22 and WRKY25 impair stomatal-mediated immunity and PTI and ETI responses against Pseudomonas syringae pv. tomato	6
An amino acid ester of menthol elicits defense responses in plants	6
Phylogenetic and functional diversity of aldehyde-alcohol dehydrogenases in microalgae	6
Comparison of Brassica Genomes reveals asymmetrical gene retention between functional groups of genes in recurrent polyploidizations	6
GhBES1 mediates brassinosteroid regulation of leaf size by activating expression of GhEXO2 in cotton (Gossypium hirsutum)	6
miR397-LACs mediated cadmium stress tolerance in Arabidopsis thaliana	6
Integrative analysis of chloroplast DNA methylation in a marine alga—Saccharina japonica	5
Lyso-phosphatidylethanolamine triggers immunity against necrotrophs by promoting JA-signaling and ROS-homeostasis	5
Phenolic sucrose esters: evolution, regulation, biosynthesis, and biological functions	5
Early gene expression response of barley root tip to toxic concentrations of cadmium	5
Deciphering the role of SPL12 and AGL6 from a genetic module that functions in nodulation and root regeneration in Medicago sativa	5
Comparative transcriptome analyses between cultivated and wild grapes reveal conservation of expressed genes but extensive rewiring of co-expression networks	5
The role of iron nanoparticles on morpho-physiological traits and genes expression (IRT1 and CAT) in rue (Ruta graveolens)	5
α-Mannosidase and β-d-N-acetylhexosaminidase outside the wall: partner exoglycosidases involved in fruit ripening process	5
Anthocyanin accumulation and transcriptional regulation in purple flowering stalk (Brassica campestris L. var. purpurea Bailey)	5
Characterization of infected process and primary mechanism in rice Acuce defense against rice blast fungus, Magnaporthe oryzae	5
Functional characterization of genes with daily expression patterns in common wheat	5
Identification of QTLs and a putative candidate gene involved in rhizome enlargement of Asian lotus (Nelumbo nucifera)	5
Enhanced growth rate under elevated CO2 conditions was observed for transgenic lines of genes identified by intraspecific variation analyses in Arabidopsis thaliana	5
Xylobiose treatment triggers a defense-related response and alters cell wall composition	5
LC–MS based metabolic fingerprinting of apricot pistils after self-compatible and self-incompatible pollinations	5
Molecular regulation of starch metabolism	5
Generalist endophyte Phomopsis liquidambaris colonization of Oryza sativa L. promotes plant growth under nitrogen starvation	5
IMPERFECTIVE EXINE FORMATION (IEF) is required for exine formation and male fertility in Arabidopsis	5
Identification and transcriptome data analysis of ARF family genes in five Orchidaceae species	5
Root-specific CLE3 expression is required for WRKY33 activation in Arabidopsis shoots	4
Allantoin improves salinity tolerance in Arabidopsis and rice through synergid activation of abscisic acid and brassinosteroid biosynthesis	4
Modelling cassava production and pest management under biotic and abiotic constraints	4
In silico analysis of NAC gene family in the mangrove plant Avicennia marina provides clues for adaptation to intertidal habitats	4
Identification of the MYB gene family in Sorghum bicolor and functional analysis of SbMYBAS1 in response to salt stress	4
Phytol recycling: essential, yet not limiting for tomato fruit tocopherol accumulation under normal growing conditions	4
A deleterious Sar1c variant in rice inhibits export of seed storage proteins from the endoplasmic reticulum	4
Moderate heat stress prevented the observed biomass and yield stimulation caused by elevated CO2 in two well-watered wheat cultivars	4
Novel insight into anthocyanin metabolism and molecular characterization of its key regulators in Camellia sasanqua	4
Cloning, functional characterization and evaluating potential in metabolic engineering for lavender ( +)-bornyl diphosphate synthase	4
The involvement of AtMKK1 and AtMKK3 in plant-deleterious microbial volatile compounds-induced defense responses	4
Transcriptomic analysis provides insights into the AUXIN RESPONSE FACTOR 6-mediated repression of nicotine biosynthesis in tobacco (Nicotiana tabacum L.)	4
The role of RST1 and RIPR proteins in plant RNA quality control systems	4
Effects of conserved Arg20, Glu74 and Asp77 on the structure and function of a tau class glutathione S-transferase in rice	4
A premature stop codon in BrFLC2 transcript results in early flowering in oilseed-type Brassica rapa plants	4
Multiple indeterminate domain (IDD)–DELLA1 complexes participate in gibberellin feedback regulation in peach	4
Combined analysis of mRNA and miRNA reveals the banana potassium absorption regulatory network and validation of miRNA160a	4
Transcriptomic analysis reveals the role of FOUR LIPS in response to salt stress in rice	4
Arabidopsis PLDζ1 and PLDζ2 localize to post-Golgi membrane compartments in a partially overlapping manner	4
Effect of ACGT motif in spatiotemporal regulation of AtAVT6D, which improves tolerance to osmotic stress and nitrogen-starvation	4
Genome-wide identification of Arabidopsis non-AUG-initiated upstream ORFs with evolutionarily conserved regulatory sequences that control protein expression levels	3
ddRADseq-mediated detection of genetic variants in sugarcane	3
OsPEX1, an extensin-like protein, negatively regulates root growth in a gibberellin-mediated manner in rice	3
GmWRKY17-mediated transcriptional regulation of GmDREB1D and GmABA2 controls drought tolerance in soybean	3
The nuclear GUCT domain-containing DEAD-box RNA helicases govern gametophytic and sporophytic development in Physcomitrium patens	3
SbCASP-LP1C1 improves salt exclusion by enhancing the root apoplastic barrier	3
Optimized transgene expression in the red alga Porphyridium purpureum and efficient recombinant protein secretion into the culture medium	3
Mucilage secretion by aerial roots in sorghum (Sorghum bicolor): sugar profile, genetic diversity, GWAS and transcriptomic analysis	3
Comprehensive analysis of KCS gene family in pear reveals the involvement of PbrKCSs in cuticular wax and suberin synthesis and pear fruit skin formation	3
Eucalyptus grandis AUX/INDOLE-3-ACETIC ACID 13 (EgrIAA13) is a novel transcriptional regulator of xylogenesis	3
The phosphorylated pathway of serine biosynthesis is crucial for indolic glucosinolate biosynthesis and plant growth promotion conferred by the root endophyte Colletotrichum tofieldiae	3
Transcriptome profiling of cashew apples (Anacardium occidentale) genotypes reveals specific genes linked to firmness and color during pseudofruit development	3
Transcriptome analysis provides insights into the bases of salicylic acid-induced resistance to anthracnose in sorghum	3
Tip growth defective1 interacts with cellulose synthase A3 to regulate cellulose biosynthesis in Arabidopsis	3
Cucumis sativus PHLOEM PROTEIN 2-A1 like gene positively regulates salt stress tolerance in cucumber seedlings	3
A complex interplay of Gβ and Gγ proteins regulates plant growth and defence traits in the allotetraploid Brassica juncea	3
Cosuppression of AtGELP22 and AtGELP23, two ubiquitinated target proteins of RING E3 ligase AtAIRP5, increases tolerance to drought stress in Arabidopsis	3
Immunohistochemical dynamics of cell wall matrix polymers during tomato autograft healing	3
Using k-mer embeddings learned from a Skip-gram based neural network for building a cross-species DNA N6-methyladenine site prediction model	3
Correction to: Current status and impending progress for cassava structural genomics	3
Exploration of molecular mechanism of intraspecific cross-incompatibility in sweetpotato by transcriptome and metabolome analysis	3
Allelic variation for alpha-Glucan Water Dikinase is associated with starch phosphate content in tetraploid potato	3
Transcriptomic and proteomic analysis reveals (E)-2-hexenal modulates tomato resistance against Botrytis cinerea by regulating plant defense mechanism	3
RXam2, a NLR from cassava (Manihot esculenta) contributes partially to the quantitative resistance to Xanthomonas phaseoli pv. manihotis	3
Laser microdissection transcriptome data derived gene regulatory networks of developing rice endosperm revealed tissue- and stage-specific regulators modulating starch metabolism	3