Journal of Neuroscience Methods

Article	Citations
Disconnecting prefrontal cortical neurons from the ventral midline thalamus: Loss of specificity due to progressive neural toxicity of an AAV-Cre in the rat thalamus	131
Editorial Board	74
Developmental, time-of-day, and stimulus-specific Golgi-Cox staining patterns detected in the mouse brain	56
Deep learning models for atypical serotonergic cells recognition	55
Using a mixed-reality headset to elicit and track clinically relevant movement in the clinic	51
A fast and simple algorithm for accurate spike detection in HD-MEA recordings	47
Identification and functional comparison of primary astrocytes and microglia	46
Optimizing tissue clearing methods for improved imaging of whole-mount retinas and optic nerves	44
µ-rhythm phase from somatosensory but not motor cortex correlates with corticospinal excitability in EEG-triggered TMS	38
IDyOMpy: A new Python-based model for the statistical analysis of musical expectations	37
The anoxia escape test as a novel and sensitive protocol to assess despair-like behavior in zebrafish	36
Real-time channel selection for enhanced steady-state visual evoked potentials online brain–computer interface systems	35
EEG Analyses of visual cue effects on executed movements	35
Decoding fMRI data with support vector machines and deep neural networks	35
REST is a superior EEG re-referencing method: A commentary on the rCAR by Kyle Q. Lepagea et al.	34
Phase-amplitude coupling detection and analysis of human 2-dimensional neural cultures in multi-well microelectrode array in vitro	34
Potential mechanism and efficacy evaluation of transcranial focused ultrasound therapy for Alzheimer's disease	32
Self-attention-based convolutional neural network and time-frequency common spatial pattern for enhanced motor imagery classification	31
Long-term organotypic brain slices cultured on collagen-based microcontact prints: A perspective for a brain-on-a-chip	31
The larval diving response (LDR): Validation of an automated, high-throughput, ecologically relevant measure of anxiety-related behavior in larval zebrafish (Danio rerio)	30
A fast and efficient method for isolating and culturing enteric neural precursor cells from adult mouse colon	30
Recognizable rehabilitation movements of multiple unilateral upper limb: An fMRI study of motor execution and motor imagery	30
In a century from agitated cells to human organoids	30
Editorial Board	29
Editorial Board	27

A comparison of confocal and epifluorescence microscopy for quantification of RNAScope and immunohistochemistry fluorescent images	27
Determining the atlas correspondence of Desikan-Killiany-Tourville and Glasser MMP1 atlases across magnetic field strengths	27
Drawing time-density curve with Fiji/ImageJ: An alternative approach for parametric coding of cerebral digital subtraction angiography	26
CircadiPy: An open-source toolkit for analyzing chronobiology time series	24
Longitudinal EEG-based assessment of neuroplasticity and adaptive responses to transcranial focused ultrasound stimulation	24
Evaluation of the deep learning-based detection of dopaminergic neurons in primary culture: A practical alternative to manual counting	23
Full-field exposure of larval zebrafish to narrow waveband LED light sources at defined power and energy for optogenetic applications	23
How to study sleep apneas in mouse models of human pathology	22
Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain	22
Validation of structure tensor analysis for orientation estimation in brain tissue microscopy	21
neuroVIISAS-based construction of a stereotactic rhesus monkey brain atlas for connectome research	21
Decoding Autism: Uncovering patterns in brain connectivity through sparsity analysis with rs-fMRI data	20
A novel transgenic reporter mouse line of astrocyte-derived small extracellular vesicles for investigating intercellular communication in vivo	20
OpenIrisDPI: An open-source digital dual Purkinje image eye tracker for visual neuroscience	20
Proper reference selection and re-referencing to mitigate bias in single pulse electrical stimulation data	20
Juggler’s ASR: Unpacking the principles of artifact subspace reconstruction for revision toward extreme MoBI	20
Electrophysiological and morphological characterization of single neurons in intact human brain organoids	20
The 3D Vertical Maze: A new model system for studying the interactions between social and spatial cognition	19
Editorial Board	19
Special issue on TMS-EEG methods, data analysis and processing	19
Uncertainty in population receptive field estimates revealed by variational qPRF	19
Direct dorsal root ganglia (DRG) injection in mice for analysis of adeno-associated viral (AAV) gene transfer to peripheral somatosensory neurons	19
LANMAO sleep recorder versus polysomnography in neonatal EEG recording and sleep analysis	18
Adoption of deep learning-based magnetic resonance image information diagnosis in brain function network analysis of Parkinson’s disease patients with end-of-dose wearing-off	18
3-dimensional morphological analysis of microglia in the sheep brain	17
Atraumatic access to human glioblastoma in a xenograft animal model by cerebral open flow microperfusion	17
A new protocol for the development of organoids based on molecular mechanisms in the developing newborn rat brain: Prospective applications in the study of Alzheimer’s disease	17
Analysis of modulations of mental fatigue on intra-individual variability from single-trial event related potentials	16
2.5D HAU-Net with gated spatial attention for automatic hippocampus segmentation in MRI	16
Reconstruction of natural images from human fMRI using a three-stage multi-level deep fusion model	16
Unsupervised alignment in neuroscience: Introducing a toolbox for Gromov–Wasserstein optimal transport	16
Applying the area fraction fractionator (AFF) probe for total volume estimations of somatic, dendritic and axonal domains of the nigrostriatal dopaminergic system in a murine model	16
Reconstructing time-domain data from discontinuous Percept™ PC and RC output using external data acquisition and linear filtering	16
Editorial Board	15
A novel rat model of cerebral small vessel disease and evaluation by super-resolution ultrasound imaging	15
A practical test for retronasal odor identification based on aromatized tablets	15
Two phases of macrophages: Inducing maturation and death of oligodendrocytes in vitro co-culture	15
Neurorehabilitation strategies: Assessing the impact on postoperative psychological state, pain, and complications in trigeminal neuralgia	15
Unlocking non-invasive brain stimulations for Next-Gen Clinical Speciality: Opportunities, challenges and future	14
Investigation into the influence of stimulation area and coil orientation on the results of navigated transcranial magnetic stimulation (nTMS) mapping of lower limb intracortical excitability	14
Primary culture of inner ear schwannoma	14
Visiomode: An open-source platform for building rodent touchscreen-based behavioral assays	14
AutoRG: An automatized reach-to-grasp platform technology for assessing forelimb motor function, neural circuit activation, and cognition in rodents	14
Comparative evaluation of cerebral tissue pretreatment strategies for metabolomics using UHPLC-high-resolution mass spectrometry	14
Detection of eye movements and eye blinks using a portable two-channel EEG platform	14
Neurophysiological metrics of surprise during locomotor uncertainty	14
Electrode configurations for sensitive and specific detection of compound muscle action potentials to the tibialis anterior muscle after peroneal nerve injury in rats	14
Measuring spatial visual loss in rats by retinotopic mapping of the superior colliculus using a novel multi-electrode array technique	13
Cross prior Bayesian attention with correlated inception and residual learning for brain tumor classification using MR images (CB-CIRL Net)	13
Behavioral phenotyping based on physical inactivity can predict sleep in female rats before, during, and after sleep disruption	12

A novel method for sparse dynamic functional connectivity analysis from resting-state fMRI	12
Multi-view graph fusion of self-weighted EEG feature representations for speech imagery decoding	12
Neurophysiological and behavioral effects of oscillatory transcranial direct current stimulation (otDCS)	12
Towards the automated detection of interictal epileptiform discharges with magnetoencephalography	12
Membrane-coated glass electrodes for stable, low-noise electrophysiology recordings in Drosophila central neurons	12
A novel approach of brain-computer interfacing (BCI) and Grad-CAM based explainable artificial intelligence: Use case scenario for smart healthcare	12
Improving the accuracy of decoding monkey brain–machine interface data by estimating the state of unobserved cell assemblies	12
Characterization of the echo-time dependence of spin-echo BOLD fMRI at 3 Tesla in grey and white matter	12
Chronic brain functional ultrasound imaging in freely moving rodents performing cognitive tasks	12
Enhancing therapeutic efficacy of fingolimod via intranasal delivery in an ethidium bromide-induced model of multiple sclerosis	12
A comparative study between a power and a connectivity sEEG biomarker for seizure-onset zone identification in temporal lobe epilepsy	12
A chinrest-based approach to measure eye movements and experimental task engagement in macaques with minimal restraint	11
biPACT: A method for three-dimensional visualization of mouse spinal cord circuits of long segments with high resolution	11
Training the spatially-coded SSVEP BCI on the fly	11
Systematic development of immunohistochemistry protocol for large cryosections-specific to non-perfused fetal brain	11
Brain MRIs classification based on 2D SWD-MF-DFA	11
Generation and validation of a D1 dopamine receptor Flpo knock-in mouse	11
Integrated Short-TE and Hadamard-edited Multi-Sequence (ISTHMUS) for advanced MRS	11
Detectability and accuracy of computational measurements of in-silico and physical representations of enlarged perivascular spaces from magnetic resonance images	11
RETRACTED: Lightweight attention mechanisms for EEG emotion recognition for brain computer interface	10
A high-resolution approach for cerebrospinal fluid cytokine detection using push-pull sampling and nano dot blot: Minute by minute TNF-α dynamics during epileptiform activity	10
The superiority verification of morphological features in the EEG-based assessment of depression	10
EC-FST: A novel pipeline for automatically analyzing mouse forced swim test	10
Multi-scale self-attention approach for analysing motor imagery signals in brain-computer interfaces	10
Editorial Board	10
Retraction notice to “Lightweight attention mechanisms for EEG emotion recognition for brain computer interface”	10
BrainTRACE (Brain Tumor Registration and Cortical Electrocorticography): A novel tool for localizing electrocorticography electrodes in patients with brain tumors	10
A novel thermoelectric device integrated with a psychophysical paradigm to study pain processing in human subjects	10
Closed-loop phase-targeted stimulation during sleep: Open-source benchmarking of methods and a novel algorithm for the epileptic brain	10
Enhanced affinity for lipophilic dyes in neurons damaged by ischemia or hypoxia	10
Activity‐State Entropy: A novel brain entropy measure based on spatial patterns of activity	10
An electrode-impedance-aware neurostimulator IC that achieves low-power consumption and fast charge balance	10
Evaluation of a stable non-aqueous coupling medium for transcranial ultrasonic stimulation and sonogenetics	9
Exploring persistence in animal models: The sinking platform test	9
Brain-computer interfaces inspired spiking neural network model for depression stage identification	9
A Weighted Head Accelerator Mechanism (WHAM) for visualizing brain rheology using magnetic resonance imaging	9
Automating behavioral analysis in neuroscience: Development of an open-source python software for more consistent and reliable results	9
Simultaneous isolation of intact brain cells and cell-specific extracellular vesicles from cryopreserved Alzheimer’s disease cortex	9
Addressing the elephant in the T-maze: Developing experimental conduct guidelines for neuroscience	9
Dynamic functional network connectivity based on spatial source phase maps of complex-valued fMRI data: Application to schizophrenia	9
Exploring the light/dark box test: Protocols and implications for neuroscience research	9
Dementia rhythms: Unveiling the EEG dynamics for MCI detection through spectral and synchrony neuromarkers	9
Editorial Board	9
Optimization of permeabilized brain tissue preparation to improve the analysis of mitochondrial oxidative capacities in specific subregions of the rat brain	9
Three-dimensional imaging and computational quantitation as a novel approach to assess nerve fibers, enteric glial cells, mast cells, and the proximity of mast cells to the nerve fibers in human sigmo	9
SIFIAE: An adaptive emotion recognition model with EEG feature-label inconsistency consideration	9
Pupillometry is sensitive to speech masking during story listening: A commentary on the critical role of modeling temporal trends	9
Editorial Board	9
Robust high spatio-temporal line-scanning fMRI in humans at 7T using multi-echo readouts, denoising and prospective motion correction	9
Estimation of complete mutual information exploiting nonlinear magnitude-phase dependence: Application to spatial FNC for complex-valued fMRI data	9
CLARITY in Alzheimer’s Research: Merging Tissue Transparency with Next-Gen Neurotechnologies	9
Cognitive driven gait freezing phase detection and classification for neuro-rehabilitated patients using machine learning algorithms	8
Editorial Board	8
Ramp protocol for non-linear cerebrovascular reactivity with transcranial doppler ultrasound	8
Assessing the impact of transcranial electrical stimulation on intracranial and cerebral perfusion pressures in patients with severe craniocerebral injury: A novel methodological approach	8
Correlating brain arteriovenous malformations location with clinical and angio-architectural characteristics: A voxel-based lesion symptom mapping approach	8
Spatial nonstationarity of image noise in widefield optical imaging and its effects on cluster-based inference for resting-state functional connectivity	8
Intra-rater reliability and validity of neuro-mobinavigation: A mobile app and laser-guided system of motor HotSpot localization	8
Development of a 3D-immunofluorescence analysis for sensory nerve endings in human ligaments	8
Rats chasing the dragon: A new heroin inhalation method	8
Adaptations to the neuronal culture for researchers at undergraduate institutions	8
Influence of threshold selection and image sequence in in-vivo segmentation of enlarged perivascular spaces	8
Quantifying GFAP immunohistochemistry in the brain – Introduction of the Reactivity score (R-score) and how it compares to other methodologies	8
Establishing In-vivo brain microdialysis for comparing concentrations of a variety of cortical neurotransmitters in the awake rhesus macaque between different cognitive states	8
Investigating dynamic causal network with unified Granger causality analysis	8
Ultrasound biomicroscopy in the quantification of brain perfusion parameters of a rat stroke model: Analysis of contrast agent bolus kinetic dynamics	8
A review of critical challenges in MI-BCI: From conventional to deep learning methods	8
Human spinal cord microglia/macrophages culture: Accutase digestion and non-enzymatic purification	8
Aseptic, semi-sealed cranial chamber implants for chronic multi-channel neurochemical and electrophysiological neural recording in nonhuman primates	8
A novel ANN-based classification of spike-wave activity in 24-hour EEG recordings in rats using spectrograms: Spike-Wave Discharge Artificial Neural Network (SWAN)	8
WS-BiTM: Integrating White Shark Optimization with Bi-LSTM for enhanced autism spectrum disorder diagnosis	7
A comparison of transduction efficiency of medial septal neurons by adeno-associated viruses with three promoters	7
Convolutional Neural Networks for the segmentation of hippocampal structures in postmortem MRI scans	7
Integrating neuroscience and artificial intelligence: EEG analysis using ensemble learning for diagnosis Alzheimer’s disease and frontotemporal dementia	7
A review on Alzheimer’s disease classification from normal controls and mild cognitive impairment using structural MR images	7
A refined Golgi-Cox method for the staining of embryonic neurons in the mouse brain	7
Functional MRI study with conductivity signal changes during visual stimulation	7
Commentary on “Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex”	7
Transcranial magnetic stimulation-based neuroplasticity in the treatment of amblyopia	7
Assessing the nature of premature responses in the rodent continuous performance test variable intertrial interval schedule using atomoxetine and amphetamine	7

A method to study human synaptic protein-protein interactions by using flow cytometry coupled to proximity ligation assay (Syn-FlowPLA)	7
Editorial Board	7
Guidelines for animal models of endurance and resistance exercise	7
The impact of temporal synchronisation imprecision on TRF analyses	7
Differences in conduction velocities of nerve fibers excited by infrared and electrical stimulation	7
Proliferation of SH-SY5Y neuroblastoma cells on confined spaces	7
Comparing human annotation and machine learning models for optimizing zebrafish behavioral classification in seizure analysis	7
Identification and verification of a 'true' TMS evoked potential in TMS-EEG	7
A novel method of neurophysiological brainstem mapping in neurosurgery	7
Stereotactic intracranial implantation of patient-derived glioblastoma cells in rats: A xenograft modeling approach	7
Standardization of a silver stain to reveal mesoscale myelin in histological preparations of the mammalian brain	7
Implementation of the neuro-glia-vascular unit through co-culture of adult neural stem cells and vascular cells and transcriptomic analysis of diverse Aβ assembly types	7
Mapping and quantifying neuropeptides in the enteric nervous system	7
Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex	7
Comparison of methods for the preparation of single-cell suspensions of rat retina and immunophenotyping by flow cytometry	7
Detecting abnormal dynamic patterns of phase changes in schizophrenia from complex-valued fMRI data	6
Editorial Board	6
Isolation, culture, and characterization of primary endothelial cells and pericytes from mouse sciatic nerve	6
μGlia-Flow, an automatic workflow for microglia segmentation and classification	6
A method for estimating and characterizing explicitly nonlinear dynamic functional network connectivity in resting-state fMRI data	6
Behavioral dynamics of different stages of sexual motivation in male and female rats	6
Brain tumor segmentation with deep learning: Current approaches and future perspectives	6
Editorial Board	6
A cranial implant for stabilizing whole-cell patch-clamp recordings in behaving rodents	6
Feature library for behavioural characterization of early and late seizures in an experimental model of post-traumatic epilepsy	6
Corrigendum to “An MRI protocol for anatomical and functional evaluation of the California sea lion brain” [J. Neurosci. Methods 353 (2021) 109097]	6
Assessment of neural function recovery in premature infants at high risk of brain injury using amplitude integrated electroencephalography and GMs scales	6
Quantification of early gait development: Expanding the application of Catwalk technology to an infant rhesus macaque model	6
Measuring the replicability of our own research	6
FB-EEGNet: A fusion neural network across multi-stimulus for SSVEP target detection	6
Single-trial-based temporal principal component analysis on extracting event-related potentials of interest for an individual subject	6
Development of a monoclonal antibody specific for a calpain-generated ∆48 kDa calcineurin fragment, a marker of distressed astrocytes	6
REVS: A new open-source platform for high-resolution analysis of rodent wheel running behavior	6
Periodicity-based multi-dimensional interaction convolution network with multi-scale feature fusion for motor imagery EEG classification	6
Assessment of voluntary drug and alcohol intake in Drosophila melanogaster using a modified one-tube capillary feeding assay	6
Activation of primate frontal eye fields with a CMUT phased array system	6
Editorial Board	6
Evaluating the efficacy of non-invasive brain stimulation techniques in managing pediatric epilepsy	6
Editorial Board	6
The use of integrated behavioural z-scoring in behavioural neuroscience – A perspective article	6
Effective R2 relaxation rate, derived from dual-contrast fast-spin-echo MRI, enables detection of hemisphere differences in iron level and dopamine function in Parkinson’s disease and healthy individu	6
CT myelography by intrathecal injection of contrast medium though percutaneous administration route visualizes compressed cervical spinal cord in a mouse	6
Voxeloc: A time-saving graphical user interface for localizing and visualizing stereo-EEG electrodes	6
Computer-controlled electrical stimulation of facial muscles by facial neuromuscular electrical stimulation (fNMES): Hardware and software solutions	6
A multimodal depression recognition method based on EEG-fNIRS-SDS	6
A method for constructing a mouse model of congenital hearing loss by bilateral cochlear ablation	6