Journal of Neuroscience Methods

Article	Citations
NeuriteNet: A convolutional neural network for assessing morphological parameters of neurite growth	88
High-frequency ultrasound-guided intrathecal injections in a young mouse model: Targeting the central nervous system in drug delivery	76
Primate eye tracking with carbon-nanotube-paper-composite based capacitive sensors and machine learning algorithms	71
Effects of the concentration level, eye fatigue and coffee consumption on the performance of a BCI system based on visual ERP-P300	66
Comparison of automated video tracking systems in the open field test: ANY-Maze versus EthoVision XT	62
Using FASS-LTP in postmortem mice brain tissues to assess pathological synaptic function	62
Reproducibility of power spectrum, functional connectivity and network construction in resting-state EEG	59
Disconnecting prefrontal cortical neurons from the ventral midline thalamus: Loss of specificity due to progressive neural toxicity of an AAV-Cre in the rat thalamus	58
Decoding EEG for optimizing naturalistic memory	56
Narrowband multivariate source separation for semi-blind discovery of experiment contrasts	53
EEG Analyses of visual cue effects on executed movements	48
A comprehensive protocol for efficient differentiation of human NPCs into electrically competent neurons	47
Establishment of the glioma polyploid giant cancer cell model by a modified PHA-DMSO-PEG fusion method following dual drug-fluorescence screening in vitro	46
Mapping dependencies of BOLD signal change to end-tidal CO2: Linear and nonlinear modeling, and effect of physiological noise correction	46
An application of dynamical directed connectivity of ictal intracranial EEG recordings in seizure onset zone localization	46
Objective neuromodulation basis for intrafascicular artificial somatosensation through carbon nanotube yarn electrodes	45
Editorial Board	45
Categorical predictive and disease progression modeling in the early stage of Alzheimer’s disease	45
Abnormal EEG signal energy in the elderly: A wavelet analysis of event-related potentials during a stroop task	44
State of the art imaging of neurotransmission in animal models	41
Focused ultrasound stimulation of an ex-vivo Aplysia abdominal ganglion preparation	39
The past and present of Drosophila models of traumatic brain injury	39
Removing nonlinear misalignment in neuronal spike trains using the Fisher-Rao registration framework	36
A behavioral paradigm for cortical control of a robotic actuator by freely moving rats in a one-dimensional two-target reaching task	36
Investigating dynamic causal network with unified Granger causality analysis	35

Editorial Board	35
Development of a 3D-immunofluorescence analysis for sensory nerve endings in human ligaments	35
Assessing the nature of premature responses in the rodent continuous performance test variable intertrial interval schedule using atomoxetine and amphetamine	34
Simple methods for cerebrospinal fluid collection in fetal, neonatal, and adult rat	33
Editorial Board	33
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Modular, cement-free, customized headpost and connector-chamber implants for macaques	31
Decoding fMRI data with support vector machines and deep neural networks	30
Self-attention-based convolutional neural network and time-frequency common spatial pattern for enhanced motor imagery classification	30
A system based on machine learning for improving sleep	30
A multi-channel EEG mini-cap can improve reliability for recording auditory brainstem responses in chinchillas	29
Multiplex imaging of human induced pluripotent stem cell-derived neurons with CO-Detection by indEXing (CODEX) technology	28
Identification and functional comparison of primary astrocytes and microglia	27
3D-mapping of TMS effects with automatic robotic placement improved reliability and the risk of spurious correlation	27
Clinimetric properties of relevant criteria for assessing writing and drawing orientation after right hemisphere stroke	26
Editorial Board	26
Ultrasound biomicroscopy in the quantification of brain perfusion parameters of a rat stroke model: Analysis of contrast agent bolus kinetic dynamics	25
A novel method of neurophysiological brainstem mapping in neurosurgery	25
Implementation of the EQIPD Quality System	25
Accelerometry as a tool for measuring the effects of transcranial magnetic stimulation	24
Delay estimation for cortical-muscular interaction with wavelet coherence time lag	24
GelMA hydrogel as a scaffold to enhance the survival and differentiation of human induced lateral ganglionic eminence precursor cells	24
A practical protocol for high-spatial-resolution magnetic resonance angiography for cerebral arteries in rats	24
The impact of simultaneous intracranial recordings on scalp EEG: A finite element analysis	24
A simple metric to study the mechanisms generating event-related potentials	23
The EQIPD quality system – Assessment and certification procedures	23
Detection of movement related cortical potentials in freehand drawing on digital tablet	23
Animal studies in clinical MRI scanners: A custom setup for combined fMRI and deep-brain stimulation in awake rats	22
Improving suction technology for nerve activity recording	22
Identification of new behavioral parameters to assess odorant hedonic value in humans: A naturalistic approach	22
Low-cost apparatus for cigarette smoke exposure in rats	22
To deconvolve, or not to deconvolve: Inferences of neuronal activities using calcium imaging data	21
Light-Dark Open Field (LDOF): A novel task for sensitive assessment of anxiety	21
Bringing together the best of chemistry and biology: hybrid indicators for imaging neuronal membrane potential	20
Editorial Board	20
A novel integrated approach to estimate the mitochondrial content of neuronal cells and brain tissues	20
Virtual histology of an entire mouse brain from formalin fixation to paraffin embedding. Part 2: Volumetric strain fields and local contrast changes	19
Editorial Board	19
Comparison of wire and disc electrodes to electrically activate the inspiratory muscles in dogs	19
Editorial Board	19
An efficient cell culture system for the studies of heterogeneous astrocytes: Time gradient digestion	19
Test-retest reliability of the 5-minute psychomotor vigilance task in working-aged females	19
Method of intra-arterial drug administration in a rat: Sex based optimization of infusion rate	19
Inter-subject registration and application of the SIGMA rat brain atlas for regional labeling in functional ultrasound imaging	19
Automated quantification of neuronal swellings in a preclinical rodent model of Parkinson’s disease detects region-specific changes in pathology	18
Methodological and analytical issues of progressive ratio schedules: Definition and scaling of breakpoint	18
Inter-trial coherence as a measure of synchrony in cervical vestibular evoked myogenic potentials	18
Editorial Board	18
A temporal classification method based on behavior time series data in patients with behavioral variant of frontotemporal dementia and apathy	18
Development of a protocol to assess within-subject, regional white matter hyperintensity changes in aging and dementia	18

Objective detection of microtremors in netrin-G2 knockout mice	17
Editorial Board	17
Measuring executive function in sheep (Ovis aries) using visual stimuli in a semi-automated operant system	16
Long term intravital single cell tracking under multiphoton microscopy	16
Optogenetic estimation of synaptic connections in brain slices	16
Fast variational alignment of non-flat 1D displacements for applications in neuroimaging	16
Mediterranean Neuroscience Methods 2019	16
Non-rigid-registration-based positioning and labelling of triaxial OPMs on a flexible cap for wearable magnetoencephalography	16
A new mouse tool for studying dopaminergic neurons	16
Brain activation patterns during visuomotor adaptation in motor experts and novices: An FDG PET study with unrestricted movements	16
Graph-theoretical analysis identifies transient spatial states of resting-state dynamic functional network connectivity and reveals dysconnectivity in schizophrenia	16
Observational learning in rats: Interplay between demonstrator and observer behavior	15
Joint domain symmetry and predictive balance for cross-dataset EEG emotion recognition	15
Editorial Board	15
All-optical electrophysiology in behaving animals	15
Array processing of neural signals recorded from the peripheral nervous system for the classification of action potentials	14
A new method for physical disector analyses of numbers and mean volumes of immunohistochemically labeled cells in paraffin sections	14
Classification of EEG signals: An interpretable approach using functional data analysis	14
Tracing goes viral: Viruses that introduce expression of fluorescent proteins in chemically-specific neurons	14
Nano dot blot: An alternative technique for protein identification and quantification in a high throughput format	14
Improved inference in coupling, encoding, and decoding models and its consequence for neuroscientific interpretation	14
Simultaneous flow cytometric characterization of multiple cell types and metabolic states in the rat brain after repeated mild traumatic brain injury	14
Long-term organotypic brain slices cultured on collagen-based microcontact prints: A perspective for a brain-on-a-chip	14
Directionality quantification of in vitro grown dorsal root ganglion neurites using Fast Fourier Transform	14
Positive reinforcement-based magnet training permits social housing in catheterized squirrel monkeys	13
Rats chasing the dragon: A new heroin inhalation method	13
Folded concave penalized learning of high-dimensional MRI data in Parkinson’s disease	13
An adaptive weighted attention-enhanced deep convolutional neural network for classification of MRI images of Parkinson's disease	13
WS-BiTM: Integrating White Shark Optimization with Bi-LSTM for enhanced autism spectrum disorder diagnosis	13
Virtual EEG-electrodes: Convolutional neural networks as a method for upsampling or restoring channels	13
Efficient infection of organotypic hippocampal slice cultures with adenovirus carrying the transgene REST/NRSF	13
Frequency specific co-activation pattern analysis via sparse nonnegative tensor decomposition	13
IDyOMpy: A new Python-based model for statistical analysis of musical expectations	13
A comparison of lesion-overlap approaches to quantify corticospinal tract involvement in chronic stroke	13
The use of happy faces as visual stimuli improves the performance of the hybrid SSVEP+P300 brain computer interface	13
A scalable, fully automated approach for regional quantification of immunohistochemical staining of astrocytes in the rat brain	13
Probing neural tissues at small scales: Recent progress of oscillating gradient spin echo (OGSE) neuroimaging in humans	12
Photo-transformable genetically-encoded optical probes for functional highlighting in vivo	12
µ-rhythm phase from somatosensory but not motor cortex correlates with corticospinal excitability in EEG-triggered TMS	12
Comparison of corticospinal tract integrity measures extracted from standard versus native space in chronic stroke	12
Altered resting fMRI spectral power in data-driven brain networks during development: A longitudinal study	12
The larval diving response (LDR): Validation of an automated, high-throughput, ecologically relevant measure of anxiety-related behavior in larval zebrafish (Danio rerio)	12
Triple electroantennography captures the range and spatial arrangement of olfactory sensory neuron response on an insect antenna	12
CluSem: Accurate clustering-based ensemble method to predict motor imagery tasks from multi-channel EEG data	12
A method for quantification of vesicular compartments within cells using 3D reconstructed confocal z-stacks: Comparison of ImageJ and Imaris to count early endosomes within basal forebrain cholinergic	12
A reliable strategy for single-cell RNA sequencing analysis using cryoconserved primary cortical cells	12
Clusterwise Independent Component Analysis (C-ICA): Using fMRI resting state networks to cluster subjects and find neurofunctional subtypes	11
Real-Time Semi-Automated and Automated Voxel Placement using fMRI Targets for Repeated Acquisition Magnetic Resonance Spectroscopy	11
MOD: A novel machine-learning optimal-filtering method for accurate and efficient detection of subthreshold synaptic events in vivo	11
Imaging the endocannabinoid signaling system	11
White matter and latency of visual evoked potentials during maturation: A miniature pig model of adolescent development	11
The rt-TEP tool: real-time visualization of TMS-Evoked Potentials to maximize cortical activation and minimize artifacts	11
Parkinson’s disease rodent models: Are they suitable for DBS research?	11
Intraparenchymal near-infrared spectroscopy for detection of delayed cerebral ischemia in poor-grade aneurysmal subarachnoid hemorrhage	11
A review of objective assessments for hyperactivity in attention deficit hyperactivity disorder	11
Correcting physiological noise in whole-head functional near-infrared spectroscopy	11
Low concentration dimethyl sulfoxide (DMSO) modulates epileptiform synchronization in the 4-aminopyridine in vitro model	11
Identification and verification of a 'true' TMS evoked potential in TMS-EEG	11
Controlling test specificity for auditory evoked response detection using a frequency domain bootstrap	11
Advanced qEEG analyses discriminate between dementia subtypes	11
Seed-based dual regression: An illustration of the impact of dual regression's inherent filtering of global signal	11
Removing artifacts from TMS-evoked EEG: A methods review and a unifying theoretical framework	11
Motor imagery EEG decoding using manifold embedded transfer learning	11
A fisher linear discriminant analysis classifier fused with naïve Bayes for simultaneous detection in an asynchronous brain-computer interface	11
ExplantAnalyzer: An advanced automated neurite outgrowth analysis evaluated by means of organotypic auditory neuron explant cultures	11
A method to study human synaptic protein-protein interactions by using flow cytometry coupled to proximity ligation assay (Syn-FlowPLA)	10
Deep learning models for atypical serotonergic cells recognition	10
Improved brain effective connectivity modelling by dynamic Bayesian networks	10
A novel 5D brain parcellation approach based on spatio-temporal encoding of resting fMRI data from deep residual learning	10
Corrigendum to: “Towards the automated detection of interictal epileptiform discharges with magnetoencephalography” [J. Neurosci. Methods 403 (2024) 110052]	10
Development of deep learning models for microglia analyses in brain tissue using DeePathology™ STUDIO	10
Ex vivo method for rapid quantification of post traumatic brain injury lesion volumes using ultrasound	10
Open cranium model for the study of cerebrovascular dynamics in intracranial hypertension	10
Increased maturation of iPSC-derived neurons in a hydrogel-based 3D culture	10
High quality, high throughput, and low-cost simultaneous video recording of 60 animals in operant chambers using PiRATeMC	10
An EEG-Based Emotion Recognition Method by Fusing Multi-Frequency-Spatial Features Under Multi-Frequency Bands	10
RPM: An open-source Rotation Platform for open- and closed-loop vestibular stimulation in head-fixed Mice	10
Theoretical and methodological analysis of EEG based seizure detection and prediction: An exhaustive review	10
Animal models of pain: Diversity and benefits	10
Quantitative determination of neuronal size and density using flow cytometry	9

Convolutional Neural Networks for the segmentation of hippocampal structures in postmortem MRI scans	9
Biophoton imaging identification of delayed functional neural circuit injury after cerebral ischemia-reperfusion	9
Development of a novel three-dimensional injection guide for trigeminal ganglia	9
Quantifying defensive behavior and threat response through integrated headstage accelerometry	9
Editorial Board	9
Evaluating blood-brain barrier disruption and infarction volume concurrently in rats subjected to ischemic stroke using an optical imaging system	9
Multisite silicon probes enable simultaneous recording of spontaneous and evoked activity in multiple isolated C-fibres in rat saphenous nerve	9
Editorial Board	9
Proliferation of SH-SY5Y neuroblastoma cells on confined spaces	9
Phase-amplitude coupling detection and analysis of human 2-dimensional neural cultures in multi-well microelectrode array in vitro	9
Use of a stable and solvent-soluble variant of Amylo-Glo, Amylo-Glo+, for the high-contrast and resolution fluorescent localization of amyloid plaques in murine and human brain tissue sections	9
Comparative study of attention-related features on attention monitoring systems with a single EEG channel	9
Editorial Board	9
A fast and efficient method for isolating and culturing enteric neural precursor cells from adult mouse colon	9
A step-by-step guide for microsurgical collection of uncontaminated cerebrospinal fluid from rat cisterna magna	9
A review on Alzheimer’s disease classification from normal controls and mild cognitive impairment using structural MR images	9
Editorial Board	9
Feasibility of ultrasound-induced blood-brain barrier disruption with a single-element transducer under three different frequencies in two non-human primates in vivo: Case report	9
Food preference assay in male and female C57BL/6 mice	9
Improvement of olfactory fMRI activation and hemodynamic response function curve with respiration correction	9
High-frequency changes in single-trial visual evoked potentials for unattended stimuli in chronic schizophrenia	9
Multimodal active subspace analysis for computing assessment oriented subspaces from neuroimaging data	8
Editorial Board	8
Ex-vivo systems for neuromodulation: A comparison of ex-vivo and in-vivo large animal nerve electrophysiology	8
Intracellular neural control of an active feeding structure in Aplysia using a carbon fiber electrode array	8
Multiple averaged records to identify Aδ-fibers in sensory nerves	8
Editorial Board	8
A biophysically constrained brain connectivity model based on stimulation-evoked potentials.	8
Recognizing the individualized sensorimotor loop of stroke patients during BMI-supported rehabilitation training based on brain functional connectivity analysis	8
Visualizing the cerebral distribution of chemical elements: A challenge met with LIBS elemental imaging	8
A partial habituation method to test for anterograde and retrograde amnestic treatment effects: Evidence that antagonism of the NMDA receptor can induce anterograde but not retrograde amnestic effects	8
Development of a vestibular schwannoma tumor slice model for pharmacological testing	8
Decoding Autism: Uncovering patterns in brain connectivity through sparsity analysis with rs-fMRI data	8
Generation of induced pluripotent stem cells from rat fibroblasts and optimization of its differentiation into mature functional neurons	8
Editorial Board	8
Editorial Board	8
Mapping and quantifying neuropeptides in the enteric nervous system	8
Editorial Board	8
A method for detecting spatiotemporal patterns of cancer biomarkers-evoked activity using radial basis function network extracted time-domain features from calcium imaging data	8
Connections of the sheep basolateral amygdala: A diffusion tensor imaging study	8
Using a new phase-locked visual feedback protocol to affirm simpler models for alpha dynamics	7
Rapid annotation of seizures and interictal-ictal-injury continuum EEG patterns	7
Automated analyses for single-fiber electrophysiological recordings using a newly developed Microsoft Excel application and graphical user interface	7
Label-free assessment of myelin status using birefringence microscopy	7
Editorial Board	7
Simulation of background neuronal activity and noise in human intracranial microwire recordings	7
Imaging and analysis of neuronal mitochondria in murine acute brain slices	7
A novel stimulator to investigate the tuning of multi-whisker responsive neurons for speed and the direction of global motion: Contact-sensitive moving stimulator for multi-whisker stimulation	7
A novel 4-cell in-vitro blood-brain barrier model and its characterization by confocal microscopy and TEER measurement	7
Detecting slow eye movements using multi-scale one-dimensional convolutional neural network for driver sleepiness detection	7
Editorial Board	7
Multiscale modeling and analytical methods in neuroscience: Molecules, neural circuits, cognition and brain disorders	7
Effect of motion state variability on error-related potentials during continuous feedback paradigms and their consequences for classification	7
Operant conditioning with a stimulus discrimination: An alternative method for evaluating alcohol reinforcement in preweaning rats	7
Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain	7
Unlocking the brain: A new method for Western blot protein detection from fixed brain tissue	7
Determining the optimal expression method for dual-color imaging	7
Consistency of independent component analysis for FMRI	7
A novel global ischemia-reperfusion rat model with asymmetric brain damage simulating post-cardiac arrest brain injury	7
Combining voltage-sensitive dye, carbon fiber array, and extracellular nerve electrodes using a 3-D printed recording chamber and manipulators	7
Simultaneous invasive and non-invasive recordings in humans: A novel Rosetta stone for deciphering brain activity	7
Recognizable rehabilitation movements of multiple unilateral upper limb: An fMRI study of motor execution and motor imagery	7
Tissue oxygen partial pressure as a viability metric for ex vivo brain tissue slices	7
ReachingBot: An automated and scalable benchtop device for highly parallel Single Pellet Reach-and-Grasp training and assessment in mice	7
Functional connectomes incorporating phase synchronization for the characterization and prediction of individual differences	7
A new method for preparing single-cell nuclear suspension of frozen spinal cord tissue	7
Editorial Board	7
Sequential semi-supervised segmentation for serial electron microscopy image with small number of labels	7
Slowly conducting potentials in human sensory nerves	7
Editorial Board	7
EEG based emotion recognition by hierarchical bayesian spectral regression framework	7
Editorial Board	7
Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex	7
Development and optimization of an effective method for evaluating habituation learning behavior in larval zebrafish	7
Modular and state-relevant functional network connectivity in high-frequency eyes open vs eyes closed resting fMRI data	7
Editorial Board	7