Journal of Neuroscience Methods

Article	Citations
A simple metric to study the mechanisms generating event-related potentials	94
Improving suction technology for nerve activity recording	87
Comparison of corticospinal tract integrity measures extracted from standard versus native space in chronic stroke	85
Imaging the endocannabinoid signaling system	71
Disconnecting prefrontal cortical neurons from the ventral midline thalamus: Loss of specificity due to progressive neural toxicity of an AAV-Cre in the rat thalamus	66
Phase-amplitude coupling detection and analysis of human 2-dimensional neural cultures in multi-well microelectrode array in vitro	51
Decoding fMRI data with support vector machines and deep neural networks	50
Folded concave penalized learning of high-dimensional MRI data in Parkinson’s disease	48
Using a mixed-reality headset to elicit and track clinically relevant movement in the clinic	47
A fisher linear discriminant analysis classifier fused with naïve Bayes for simultaneous detection in an asynchronous brain-computer interface	42
Seed-based dual regression: An illustration of the impact of dual regression's inherent filtering of global signal	42
IDyOMpy: A new Python-based model for the statistical analysis of musical expectations	39
EEG Analyses of visual cue effects on executed movements	39
Objective neuromodulation basis for intrafascicular artificial somatosensation through carbon nanotube yarn electrodes	38
State of the art imaging of neurotransmission in animal models	37
Self-attention-based convolutional neural network and time-frequency common spatial pattern for enhanced motor imagery classification	36
Identification and functional comparison of primary astrocytes and microglia	36
Deep learning models for atypical serotonergic cells recognition	34
The larval diving response (LDR): Validation of an automated, high-throughput, ecologically relevant measure of anxiety-related behavior in larval zebrafish (Danio rerio)	33
A novel 5D brain parcellation approach based on spatio-temporal encoding of resting fMRI data from deep residual learning	32
Theoretical and methodological analysis of EEG based seizure detection and prediction: An exhaustive review	32
Mapping dependencies of BOLD signal change to end-tidal CO2: Linear and nonlinear modeling, and effect of physiological noise correction	30
Abnormal EEG signal energy in the elderly: A wavelet analysis of event-related potentials during a stroop task	30
Virtual EEG-electrodes: Convolutional neural networks as a method for upsampling or restoring channels	29
Editorial Board	27

Long-term organotypic brain slices cultured on collagen-based microcontact prints: A perspective for a brain-on-a-chip	27
Editorial Board	27
µ-rhythm phase from somatosensory but not motor cortex correlates with corticospinal excitability in EEG-triggered TMS	27
Recognizable rehabilitation movements of multiple unilateral upper limb: An fMRI study of motor execution and motor imagery	27
A fast and efficient method for isolating and culturing enteric neural precursor cells from adult mouse colon	26
A novel tool for the removal of muscle artefacts from EEG: Improving data quality in the gamma frequency range	26
CircadiPy: An open-source toolkit for analyzing chronobiology time series	26
TMS-EEG responses across the lifespan: Measurement, methods for characterisation and identified responses	25
A comparison of confocal and epifluorescence microscopy for quantification of RNAScope and immunohistochemistry fluorescent images	25
Molecular fMRI of neurochemical signaling	25
How to study sleep apneas in mouse models of human pathology	25
Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain	25
Decoding Autism: Uncovering patterns in brain connectivity through sparsity analysis with rs-fMRI data	24
In a century from agitated cells to human organoids	23
Full-field exposure of larval zebrafish to narrow waveband LED light sources at defined power and energy for optogenetic applications	22
Two brains, one target: Design of a multi-level information fusion model based on dual-subject RSVP	22
Analysis of modulations of mental fatigue on intra-individual variability from single-trial event related potentials	21
Drawing time-density curve with Fiji/ImageJ: An alternative approach for parametric coding of cerebral digital subtraction angiography	21
Special issue on TMS-EEG methods, data analysis and processing	21
Electrophysiological and morphological characterization of single neurons in intact human brain organoids	21
Neurorehabilitation strategies: Assessing the impact on postoperative psychological state, pain, and complications in trigeminal neuralgia	21
TAAC - TMS Adaptable Auditory Control: A universal tool to mask TMS clicks	21
A conditional GABAergic synaptic vesicle marker for Drosophila	21
A practical test for retronasal odor identification based on aromatized tablets	20
LANMAO sleep recorder versus polysomnography in neonatal EEG recording and sleep analysis	20
Atraumatic access to human glioblastoma in a xenograft animal model by cerebral open flow microperfusion	20
Reconstruction of natural images from human fMRI using a three-stage multi-level deep fusion model	19
Editorial Board	19
Adoption of deep learning-based magnetic resonance image information diagnosis in brain function network analysis of Parkinson’s disease patients with end-of-dose wearing-off	19
Direct dorsal root ganglia (DRG) injection in mice for analysis of adeno-associated viral (AAV) gene transfer to peripheral somatosensory neurons	18
Mouse model of voluntary movement deficits induced by needlestick injuries to the primary motor cortex	18
Continual cerebrospinal fluid sampling in the neonatal domestic piglet for biomarker and discovery studies	18
A new protocol for the development of organoids based on molecular mechanisms in the developing newborn rat brain: Prospective applications in the study of Alzheimer’s disease	18
Applying the area fraction fractionator (AFF) probe for total volume estimations of somatic, dendritic and axonal domains of the nigrostriatal dopaminergic system in a murine model	18
A 3D cell culture approach for studying neuroinflammation	17
Cross prior Bayesian attention with correlated inception and residual learning for brain tumor classification using MR images (CB-CIRL Net)	17
A novel approach of brain-computer interfacing (BCI) and Grad-CAM based explainable artificial intelligence: Use case scenario for smart healthcare	17
Editorial Board	17
Editorial Board	17
A novel rat model of cerebral small vessel disease and evaluation by super-resolution ultrasound imaging	17
Automated lever task with minimum antigravity movement for rats with cervical spinal cord injury	16
A novel method for sparse dynamic functional connectivity analysis from resting-state fMRI	16
A 120-target brain-computer interface based on code-modulated visual evoked potentials	16
Characterization of neuronal viability and network activity under microfluidic flow	16
Selective isolation of mouse glial nuclei optimized for reliable downstream omics analyses	16
Real-time estimation of perceptual thresholds based on the electroencephalogram using a deep neural network	16
Multi-view iterative random walker for automated salvageable tissue delineation in ischemic stroke from multi-sequence MRI	16
Effects of inter-stimulus intervals on concurrent P300 and SSVEP features for hybrid brain-computer interfaces	16
Characterization of the echo-time dependence of spin-echo BOLD fMRI at 3 Tesla in grey and white matter	15
Visiomode: An open-source platform for building rodent touchscreen-based behavioral assays	15

Behavioral phenotyping based on physical inactivity can predict sleep in female rats before, during, and after sleep disruption	15
Two phases of macrophages: Inducing maturation and death of oligodendrocytes in vitro co-culture	15
Electrode configurations for sensitive and specific detection of compound muscle action potentials to the tibialis anterior muscle after peroneal nerve injury in rats	15
Chronic brain functional ultrasound imaging in freely moving rodents performing cognitive tasks	14
Dynamic theta/beta ratio of clinical EEG in Alzheimer's disease	14
An electrode-impedance-aware neurostimulator IC that achieves low-power consumption and fast charge balance	14
biPACT: A method for three-dimensional visualization of mouse spinal cord circuits of long segments with high resolution	14
Measuring spatial visual loss in rats by retinotopic mapping of the superior colliculus using a novel multi-electrode array technique	14
Membrane-coated glass electrodes for stable, low-noise electrophysiology recordings in Drosophila central neurons	14
A new approach to symmetric registration of longitudinal structural MRI of the human brain	14
Systematic development of immunohistochemistry protocol for large cryosections-specific to non-perfused fetal brain	14
AutoRG: An automatized reach-to-grasp platform technology for assessing forelimb motor function, neural circuit activation, and cognition in rodents	14
A comparative study between a power and a connectivity sEEG biomarker for seizure-onset zone identification in temporal lobe epilepsy	14
A chinrest-based approach to measure eye movements and experimental task engagement in macaques with minimal restraint	14
A low-cost mouse cage warming system provides improved intra-ischemic and post-ischemic body temperature control – Application for reducing variability in experimental stroke studies	13
Improving the accuracy of decoding monkey brain–machine interface data by estimating the state of unobserved cell assemblies	13
An autonomous hybrid brain-computer interface system combined with eye-tracking in virtual environment	13
Computational framework for investigating predictive processing in auditory perception	13
Microelectrode clusters enable therapeutic deep brain stimulation without noticeable side-effects in a rodent model of Parkinson’s disease	13
Training the spatially-coded SSVEP BCI on the fly	13
A miniature kinematic coupling device for mouse head fixation	13
A method for the selective depletion of microglia in the dorsal hippocampus in the juvenile rat brain	13
A novel thermoelectric device integrated with a psychophysical paradigm to study pain processing in human subjects	13
The superiority verification of morphological features in the EEG-based assessment of depression	13
Avian adeno-associated virus as an anterograde transsynaptic vector	13
Exploring the light/dark box test: Protocols and implications for neuroscience research	12
Imaging mitochondrial calcium dynamics in the central nervous system	12
Generation and validation of a D1 dopamine receptor Flpo knock-in mouse	12
Activity‐State Entropy: A novel brain entropy measure based on spatial patterns of activity	12
Integrated Short-TE and Hadamard-edited Multi-Sequence (ISTHMUS) for advanced MRS	12
Eavesdropping wires: Recording activity in axons using genetically encoded calcium indicators	12
RETRACTED: Lightweight attention mechanisms for EEG emotion recognition for brain computer interface	12
Multi-scale self-attention approach for analysing motor imagery signals in brain-computer interfaces	12
Dementia rhythms: Unveiling the EEG dynamics for MCI detection through spectral and synchrony neuromarkers	12
Pupillometry is sensitive to speech masking during story listening: A commentary on the critical role of modeling temporal trends	12
Convolutional neural networks ensemble model for neonatal seizure detection	11
Establishing In-vivo brain microdialysis for comparing concentrations of a variety of cortical neurotransmitters in the awake rhesus macaque between different cognitive states	11
Quantification of relative neurite tortuosity using Fourier transforms	11
Method of long-term, recurrent, intracerebroventricular infusion of cellular therapy in mice	11
Automating behavioral analysis in neuroscience: Development of an open-source python software for more consistent and reliable results	11
Detectability and accuracy of computational measurements of in-silico and physical representations of enlarged perivascular spaces from magnetic resonance images	11
Editorial Board	11
Addressing the elephant in the T-maze: Developing experimental conduct guidelines for neuroscience	11
Non-stimulus-evoked activity as a measure of neural noise in the frequency-following response	11
Dynamic functional network connectivity based on spatial source phase maps of complex-valued fMRI data: Application to schizophrenia	11
Towards the automated detection of interictal epileptiform discharges with magnetoencephalography	11
A new patterned air-flow device to reveal the network for tactile motion coding using fMRI	11
Editorial Board	11
Automated segmentation of choroidal layers from 3-dimensional macular optical coherence tomography scans	11
Editorial Board	11
Spatial nonstationarity of image noise in widefield optical imaging and its effects on cluster-based inference for resting-state functional connectivity	10
Low-quality training data detection method of EEG signals for motor imagery BCI system	10
Quantifying GFAP immunohistochemistry in the brain – Introduction of the Reactivity score (R-score) and how it compares to other methodologies	10
Influence of threshold selection and image sequence in in-vivo segmentation of enlarged perivascular spaces	10
Simultaneous isolation of intact brain cells and cell-specific extracellular vesicles from cryopreserved Alzheimer’s disease cortex	10
A Weighted Head Accelerator Mechanism (WHAM) for visualizing brain rheology using magnetic resonance imaging	10
Let's get wild: A review of free-ranging rat assays as context-enriched supplements to traditional laboratory models	10
Brain-computer interfaces inspired spiking neural network model for depression stage identification	10
A subgaleal electrode array for neurostimulation allows the recording of relevant information in closed loop applications	10
Estimation of complete mutual information exploiting nonlinear magnitude-phase dependence: Application to spatial FNC for complex-valued fMRI data	10
Exploring persistence in animal models: The sinking platform test	10
Robust high spatio-temporal line-scanning fMRI in humans at 7T using multi-echo readouts, denoising and prospective motion correction	10
Spatio-Spectral CCA (SS-CCA): A novel approach for frequency recognition in SSVEP-based BCI	10
Cognitive driven gait freezing phase detection and classification for neuro-rehabilitated patients using machine learning algorithms	10
Investigating dynamic causal network with unified Granger causality analysis	9
Classification of EEG signals: An interpretable approach using functional data analysis	9
A comparison of lesion-overlap approaches to quantify corticospinal tract involvement in chronic stroke	9
A method to study human synaptic protein-protein interactions by using flow cytometry coupled to proximity ligation assay (Syn-FlowPLA)	9
Development of a 3D-immunofluorescence analysis for sensory nerve endings in human ligaments	9
Detection of movement related cortical potentials in freehand drawing on digital tablet	9
Simultaneous flow cytometric characterization of multiple cell types and metabolic states in the rat brain after repeated mild traumatic brain injury	9
Optimization of permeabilized brain tissue preparation to improve the analysis of mitochondrial oxidative capacities in specific subregions of the rat brain	9
A review of critical challenges in MI-BCI: From conventional to deep learning methods	9
Rats chasing the dragon: A new heroin inhalation method	9
Editorial Board	9
Animal studies in clinical MRI scanners: A custom setup for combined fMRI and deep-brain stimulation in awake rats	9
CluSem: Accurate clustering-based ensemble method to predict motor imagery tasks from multi-channel EEG data	9
SIFIAE: An adaptive emotion recognition model with EEG feature-label inconsistency consideration	9
Ultrasound biomicroscopy in the quantification of brain perfusion parameters of a rat stroke model: Analysis of contrast agent bolus kinetic dynamics	9
Assessing the nature of premature responses in the rodent continuous performance test variable intertrial interval schedule using atomoxetine and amphetamine	9

Removing nonlinear misalignment in neuronal spike trains using the Fisher-Rao registration framework	9
Editorial Board	9
Convolutional Neural Networks for the segmentation of hippocampal structures in postmortem MRI scans	8
Editorial Board	8
Commentary on “Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex”	8
Cortical stimulation depth of nTMS investigated in a cohort of convexity meningiomas above the primary motor cortex	8
Ramp protocol for non-linear cerebrovascular reactivity with transcranial doppler ultrasound	8
A machine learning approach to identify stochastic resonance in human perceptual thresholds	8
WS-BiTM: Integrating White Shark Optimization with Bi-LSTM for enhanced autism spectrum disorder diagnosis	8
Editorial Board	8
Implementation of the neuro-glia-vascular unit through co-culture of adult neural stem cells and vascular cells and transcriptomic analysis of diverse Aβ assembly types	8
FB-EEGNet: A fusion neural network across multi-stimulus for SSVEP target detection	8
Virtual histology of an entire mouse brain from formalin fixation to paraffin embedding. Part 2: Volumetric strain fields and local contrast changes	8
A novel method of neurophysiological brainstem mapping in neurosurgery	8
Editorial Board	8
Multiscale modeling and analytical methods in neuroscience: Molecules, neural circuits, cognition and brain disorders	8
Comparison of methods for the preparation of single-cell suspensions of rat retina and immunophenotyping by flow cytometry	8
Functional connectomes incorporating phase synchronization for the characterization and prediction of individual differences	8
Intra-rater reliability and validity of neuro-mobinavigation: A mobile app and laser-guided system of motor HotSpot localization	8
Identification and verification of a 'true' TMS evoked potential in TMS-EEG	8
Functional MRI study with conductivity signal changes during visual stimulation	7
Guidelines for animal models of endurance and resistance exercise	7
Toolkit for Oscillatory Real-time Tracking and Estimation (TORTE)	7
Proliferation of SH-SY5Y neuroblastoma cells on confined spaces	7
The impact of temporal synchronisation imprecision on TRF analyses	7
A novel 3D-printed multi-driven system for large-scale neurophysiological recordings in multiple brain regions	7
A method for estimating and characterizing explicitly nonlinear dynamic functional network connectivity in resting-state fMRI data	7
Crispr/Cas-based modeling of NF2 loss in meningioma cells	7
Genetically encoded sensors towards imaging cAMP and PKA activity in vivo	7
Integrating neuroscience and artificial intelligence: EEG analysis using ensemble learning for diagnosis Alzheimer’s disease and frontotemporal dementia	7
Editorial Board	7
Comparative analysis of spectral and temporal combinations in CSP-based methods for decoding hand motor imagery tasks	7
Imaging and analysis of neuronal mitochondria in murine acute brain slices	7
Computational approach to understand temporal and spatial tactile transmission processes from mechanical stimuli of the index fingertip to the primary somatosensory cortex	7
Disjoint subspaces for common and distinct component analysis: Application to the fusion of multi-task FMRI data	7
Measuring the replicability of our own research	7
Dorsal myelotomy in E15–E16 fetal rat: A promising paradigm in regeneration research, with serendipitous transcriptomic effects on development, of the primary afferent system	7
A review on Alzheimer’s disease classification from normal controls and mild cognitive impairment using structural MR images	7
The use of integrated behavioural z-scoring in behavioural neuroscience – A perspective article	7
Effective R2 relaxation rate, derived from dual-contrast fast-spin-echo MRI, enables detection of hemisphere differences in iron level and dopamine function in Parkinson’s disease and healthy individu	7
Standardization of a silver stain to reveal mesoscale myelin in histological preparations of the mammalian brain	7
Mapping and quantifying neuropeptides in the enteric nervous system	7
Spatial localization in target detection based on decoding N2pc component	7
Food preference assay in male and female C57BL/6 mice	7
Analytic consistency and neural correlates of peak alpha frequency in the study of pain	7
Editorial Board	6
Facile method to incorporate high-affinity ACAT/SOAT1 inhibitor F12511 into stealth liposome-based nanoparticle and demonstration of its efficacy in blocking cholesteryl ester biosynthesis without ove	6
Machine learning applications on neuroimaging for diagnosis and prognosis of epilepsy: A review	6
Editorial Board	6
Editorial Board	6
Spectrum dependency to rate and spike timing in neuronal spike trains	6
Morphological active contour model for automatic brain tumor extraction from multimodal magnetic resonance images	6
A new waveform analysis method reflecting the diversity of F-wave Waveforms–Waveform types in healthy subjects based on the combined use of the additive averaging method and histograms-	6
Aptamer-based enrichment of TDP-43 from human cells and tissues with quantification by HPLC-MS/MS	6
Development of a monoclonal antibody specific for a calpain-generated ∆48 kDa calcineurin fragment, a marker of distressed astrocytes	6
Decoding olfactory EEG signals for different odor stimuli identification using wavelet-spatial domain feature	6
Integration of human whole-brain transcriptome and neuroimaging data: Practical considerations of current available methods	6
A cranial implant for stabilizing whole-cell patch-clamp recordings in behaving rodents	6
Median amplitude and frequency analysis of sensory nerve responses to intraepidermal stimulation	6
Reconfiguration of cortical brain network from searching to spotting for dynamic visual targets	6
Voxeloc: A time-saving graphical user interface for localizing and visualizing stereo-EEG electrodes	6
Quantification of early gait development: Expanding the application of Catwalk technology to an infant rhesus macaque model	6
Assessment of neural function recovery in premature infants at high risk of brain injury using amplitude integrated electroencephalography and GMs scales	6
An LC-APCI+-MS/MS-based method for determining the concentration of neurosteroids in the brain of male mice with different gut microbiota	6
Isolation, culture, and characterization of primary endothelial cells and pericytes from mouse sciatic nerve	6
Automated system for training and assessing reaching and grasping behaviors in rodents	6
A radiofrequency coil to facilitate task-based fMRI of awake marmosets	6
Periodicity-based multi-dimensional interaction convolution network with multi-scale feature fusion for motor imagery EEG classification	6
A multiscale siamese convolutional neural network with cross-channel fusion for motor imagery decoding	6
Single-trial-based temporal principal component analysis on extracting event-related potentials of interest for an individual subject	6
Editorial Board	6
EEG artifact rejection by extracting spatial and spatio-spectral common components	5
Editorial Board	5
Micropipette-guided Drug Administration (MDA) as a non-invasive chronic oral administration method in male rats	5
Demonstrating a measurement protocol for studying comparative whisker movements with implications for the evolution of behaviour	5
New approach to control ischemic severity ex vivo	5
Global brain connectivity: Test-retest stability and association with biological and neurocognitive variables	5
Accelerating input-output model estimation with parallel computing for testing hippocampal memory prostheses in human	5
Localization of neurons from extracellular footprints	5
The blood biomarkers puzzle – A review of protein biomarkers in neurodegenerative diseases	5
The ototoxic effect of locally applied kanamycin and furosemide in guinea pigs	5
Editorial Board	5
Three-dimensional reconstruction of magnetic resonance images of carp brain for brain control technology	5
Using dynamic spatio-temporal graph pooling network for identifying autism spectrum disorders in spontaneous functional infrared spectral sequence signals	5
Novel comprehensive analysis of skilled reaching and grasping behavior in adult rats	5
A reliable and efficient adaptive Bayesian method to assess static lower limb position sense	5
“Counting sheep PSG”: EEGLAB-compatible open-source matlab software for signal processing, visualization, event marking and staging of polysomnographic data	5
An efficient new assay for measuring zebrafish anxiety: Tall tanks that better characterize between-individual differences	5
Holo-Hilbert spectral-based noise removal method for EEG high-frequency bands	5
Editorial Board	5
Diagnosis of Alzheimer's disease based on regional attention with sMRI gray matter slices	5
Brain imaging-based machine learning in autism spectrum disorder: methods and applications	5
Characterization of the GfaABC1D promoter to selectively target astrocytes in the rhesus macaque brain	5
Comparison of electrical microstimulation artifact removal methods for high-channel-count prostheses	5
Assessment of dynamic phase amplitude coupling using matching pursuit	5