Journal of Neuroscience Methods

Article	Citations
NeuriteNet: A convolutional neural network for assessing morphological parameters of neurite growth	88
High-frequency ultrasound-guided intrathecal injections in a young mouse model: Targeting the central nervous system in drug delivery	76
Primate eye tracking with carbon-nanotube-paper-composite based capacitive sensors and machine learning algorithms	71
Effects of the concentration level, eye fatigue and coffee consumption on the performance of a BCI system based on visual ERP-P300	62
Using FASS-LTP in postmortem mice brain tissues to assess pathological synaptic function	62
Comparison of automated video tracking systems in the open field test: ANY-Maze versus EthoVision XT	59
Disconnecting prefrontal cortical neurons from the ventral midline thalamus: Loss of specificity due to progressive neural toxicity of an AAV-Cre in the rat thalamus	56
Decoding EEG for optimizing naturalistic memory	53
Narrowband multivariate source separation for semi-blind discovery of experiment contrasts	47
EEG Analyses of visual cue effects on executed movements	46
A comprehensive protocol for efficient differentiation of human NPCs into electrically competent neurons	46
An application of dynamical directed connectivity of ictal intracranial EEG recordings in seizure onset zone localization	45
Mapping dependencies of BOLD signal change to end-tidal CO2: Linear and nonlinear modeling, and effect of physiological noise correction	45
Establishment of the glioma polyploid giant cancer cell model by a modified PHA-DMSO-PEG fusion method following dual drug-fluorescence screening in vitro	36
Objective neuromodulation basis for intrafascicular artificial somatosensation through carbon nanotube yarn electrodes	35
Editorial Board	35
Categorical predictive and disease progression modeling in the early stage of Alzheimer’s disease	35
Abnormal EEG signal energy in the elderly: A wavelet analysis of event-related potentials during a stroop task	34
State of the art imaging of neurotransmission in animal models	33
The past and present of Drosophila models of traumatic brain injury	31
Focused ultrasound stimulation of an ex-vivo Aplysia abdominal ganglion preparation	30
A behavioral paradigm for cortical control of a robotic actuator by freely moving rats in a one-dimensional two-target reaching task	30
Removing nonlinear misalignment in neuronal spike trains using the Fisher-Rao registration framework	29
Development of a 3D-immunofluorescence analysis for sensory nerve endings in human ligaments	27
Editorial Board	27

Assessing the nature of premature responses in the rodent continuous performance test variable intertrial interval schedule using atomoxetine and amphetamine	26
Investigating dynamic causal network with unified Granger causality analysis	26
Editorial Board	25
Simple methods for cerebrospinal fluid collection in fetal, neonatal, and adult rat	25
Editorial Board	25
A system based on machine learning for improving sleep	24
A multi-channel EEG mini-cap can improve reliability for recording auditory brainstem responses in chinchillas	24
Decoding fMRI data with support vector machines and deep neural networks	24
Self-attention-based convolutional neural network and time-frequency common spatial pattern for enhanced motor imagery classification	24
Modular, cement-free, customized headpost and connector-chamber implants for macaques	24
3D-mapping of TMS effects with automatic robotic placement improved reliability and the risk of spurious correlation	23
Identification and functional comparison of primary astrocytes and microglia	23
Multiplex imaging of human induced pluripotent stem cell-derived neurons with CO-Detection by indEXing (CODEX) technology	23
Clinimetric properties of relevant criteria for assessing writing and drawing orientation after right hemisphere stroke	22
Ultrasound biomicroscopy in the quantification of brain perfusion parameters of a rat stroke model: Analysis of contrast agent bolus kinetic dynamics	22
Editorial Board	22
Implementation of the EQIPD Quality System	21
A novel method of neurophysiological brainstem mapping in neurosurgery	21
The impact of simultaneous intracranial recordings on scalp EEG: A finite element analysis	20
Delay estimation for cortical-muscular interaction with wavelet coherence time lag	20
GelMA hydrogel as a scaffold to enhance the survival and differentiation of human induced lateral ganglionic eminence precursor cells	20
The EQIPD quality system – Assessment and certification procedures	19
A practical protocol for high-spatial-resolution magnetic resonance angiography for cerebral arteries in rats	19
Detection of movement related cortical potentials in freehand drawing on digital tablet	19
Accelerometry as a tool for measuring the effects of transcranial magnetic stimulation	19
Animal studies in clinical MRI scanners: A custom setup for combined fMRI and deep-brain stimulation in awake rats	19
A simple metric to study the mechanisms generating event-related potentials	19
Improving suction technology for nerve activity recording	19
A novel integrated approach to estimate the mitochondrial content of neuronal cells and brain tissues	18
To deconvolve, or not to deconvolve: Inferences of neuronal activities using calcium imaging data	18
Bringing together the best of chemistry and biology: hybrid indicators for imaging neuronal membrane potential	18
Identification of new behavioral parameters to assess odorant hedonic value in humans: A naturalistic approach	18
Light-Dark Open Field (LDOF): A novel task for sensitive assessment of anxiety	18
Low-cost apparatus for cigarette smoke exposure in rats	18
Test-retest reliability of the 5-minute psychomotor vigilance task in working-aged females	17
Editorial Board	17
Comparison of wire and disc electrodes to electrically activate the inspiratory muscles in dogs	16
An efficient cell culture system for the studies of heterogeneous astrocytes: Time gradient digestion	16
Virtual histology of an entire mouse brain from formalin fixation to paraffin embedding. Part 2: Volumetric strain fields and local contrast changes	16
Editorial Board	16
Method of intra-arterial drug administration in a rat: Sex based optimization of infusion rate	16
Editorial Board	16
Development of a protocol to assess within-subject, regional white matter hyperintensity changes in aging and dementia	15
Inter-subject registration and application of the SIGMA rat brain atlas for regional labeling in functional ultrasound imaging	15
Methodological and analytical issues of progressive ratio schedules: Definition and scaling of breakpoint	15
Editorial Board	15
Objective detection of microtremors in netrin-G2 knockout mice	14
Long term intravital single cell tracking under multiphoton microscopy	14
A temporal classification method based on behavior time series data in patients with behavioral variant of frontotemporal dementia and apathy	14
Automated quantification of neuronal swellings in a preclinical rodent model of Parkinson’s disease detects region-specific changes in pathology	14

Graph-theoretical analysis identifies transient spatial states of resting-state dynamic functional network connectivity and reveals dysconnectivity in schizophrenia	14
Editorial Board	14
Measuring executive function in sheep (Ovis aries) using visual stimuli in a semi-automated operant system	14
Fast variational alignment of non-flat 1D displacements for applications in neuroimaging	14
Inter-trial coherence as a measure of synchrony in cervical vestibular evoked myogenic potentials	14
Brain activation patterns during visuomotor adaptation in motor experts and novices: An FDG PET study with unrestricted movements	13
Non-rigid-registration-based positioning and labelling of triaxial OPMs on a flexible cap for wearable magnetoencephalography	13
Observational learning in rats: Interplay between demonstrator and observer behavior	13
A new method for physical disector analyses of numbers and mean volumes of immunohistochemically labeled cells in paraffin sections	13
Optogenetic estimation of synaptic connections in brain slices	13
Editorial Board	13
All-optical electrophysiology in behaving animals	13
Long-term organotypic brain slices cultured on collagen-based microcontact prints: A perspective for a brain-on-a-chip	13
Joint domain symmetry and predictive balance for cross-dataset EEG emotion recognition	13
Simultaneous flow cytometric characterization of multiple cell types and metabolic states in the rat brain after repeated mild traumatic brain injury	13
Virtual EEG-electrodes: Convolutional neural networks as a method for upsampling or restoring channels	12
Positive reinforcement-based magnet training permits social housing in catheterized squirrel monkeys	12
Nano dot blot: An alternative technique for protein identification and quantification in a high throughput format	12
Frequency specific co-activation pattern analysis via sparse nonnegative tensor decomposition	12
Classification of EEG signals: An interpretable approach using functional data analysis	12
Improved inference in coupling, encoding, and decoding models and its consequence for neuroscientific interpretation	12
Rats chasing the dragon: A new heroin inhalation method	12
A comparison of lesion-overlap approaches to quantify corticospinal tract involvement in chronic stroke	12
Directionality quantification of in vitro grown dorsal root ganglion neurites using Fast Fourier Transform	12
WS-BiTM: Integrating White Shark Optimization with Bi-LSTM for enhanced autism spectrum disorder diagnosis	12
Efficient infection of organotypic hippocampal slice cultures with adenovirus carrying the transgene REST/NRSF	11
The larval diving response (LDR): Validation of an automated, high-throughput, ecologically relevant measure of anxiety-related behavior in larval zebrafish (Danio rerio)	11
Triple electroantennography captures the range and spatial arrangement of olfactory sensory neuron response on an insect antenna	11
CluSem: Accurate clustering-based ensemble method to predict motor imagery tasks from multi-channel EEG data	11
Controlling test specificity for auditory evoked response detection using a frequency domain bootstrap	11
Altered resting fMRI spectral power in data-driven brain networks during development: A longitudinal study	11
The use of happy faces as visual stimuli improves the performance of the hybrid SSVEP+P300 brain computer interface	11
An adaptive weighted attention-enhanced deep convolutional neural network for classification of MRI images of Parkinson's disease	11
A method for quantification of vesicular compartments within cells using 3D reconstructed confocal z-stacks: Comparison of ImageJ and Imaris to count early endosomes within basal forebrain cholinergic	11
Advanced qEEG analyses discriminate between dementia subtypes	11
Probing neural tissues at small scales: Recent progress of oscillating gradient spin echo (OGSE) neuroimaging in humans	11
Clusterwise Independent Component Analysis (C-ICA): Using fMRI resting state networks to cluster subjects and find neurofunctional subtypes	11
Folded concave penalized learning of high-dimensional MRI data in Parkinson’s disease	11
Photo-transformable genetically-encoded optical probes for functional highlighting in vivo	11
µ-rhythm phase from somatosensory but not motor cortex correlates with corticospinal excitability in EEG-triggered TMS	11
Comparison of corticospinal tract integrity measures extracted from standard versus native space in chronic stroke	11
Intraparenchymal near-infrared spectroscopy for detection of delayed cerebral ischemia in poor-grade aneurysmal subarachnoid hemorrhage	11
Parkinson’s disease rodent models: Are they suitable for DBS research?	11
ExplantAnalyzer: An advanced automated neurite outgrowth analysis evaluated by means of organotypic auditory neuron explant cultures	10
Phase-amplitude coupling detection and analysis of human 2-dimensional neural cultures in multi-well microelectrode array in vitro	10
Development of deep learning models for microglia analyses in brain tissue using DeePathology™ STUDIO	10
Seed-based dual regression: An illustration of the impact of dual regression's inherent filtering of global signal	10
A review of objective assessments for hyperactivity in attention deficit hyperactivity disorder	10
Deep learning models for atypical serotonergic cells recognition	10
Editorial Board	10
Real-Time Semi-Automated and Automated Voxel Placement using fMRI Targets for Repeated Acquisition Magnetic Resonance Spectroscopy	10
Removing artifacts from TMS-evoked EEG: A methods review and a unifying theoretical framework	10
Ex vivo method for rapid quantification of post traumatic brain injury lesion volumes using ultrasound	10
A method to study human synaptic protein-protein interactions by using flow cytometry coupled to proximity ligation assay (Syn-FlowPLA)	10
MOD: A novel machine-learning optimal-filtering method for accurate and efficient detection of subthreshold synaptic events in vivo	10
Identification and verification of a 'true' TMS evoked potential in TMS-EEG	9
Low concentration dimethyl sulfoxide (DMSO) modulates epileptiform synchronization in the 4-aminopyridine in vitro model	9
Correcting physiological noise in whole-head functional near-infrared spectroscopy	9
Theoretical and methodological analysis of EEG based seizure detection and prediction: An exhaustive review	9
RPM: An open-source Rotation Platform for open- and closed-loop vestibular stimulation in head-fixed Mice	9
Intra-Rater Reliability and Validity of Neuro-Mobinavigation: A Mobile App and Laser-Guided System of Motor HotSpot Localization	9
A review of methods for classification and recognition of ASD using fMRI data	9
The rt-TEP tool: real-time visualization of TMS-Evoked Potentials to maximize cortical activation and minimize artifacts	9
Motor imagery EEG decoding using manifold embedded transfer learning	9
Improved brain effective connectivity modelling by dynamic Bayesian networks	9
Open cranium model for the study of cerebrovascular dynamics in intracranial hypertension	9
Corrigendum to: “Towards the automated detection of interictal epileptiform discharges with magnetoencephalography” [J. Neurosci. Methods 403 (2024) 110052]	9
Regularized Kalman filter for brain-computer interfaces using local field potential signals	9
Anatomical registration of intracranial electrodes. Robust model-based localization and deformable smooth brain-shift compensation methods	9
A fisher linear discriminant analysis classifier fused with naïve Bayes for simultaneous detection in an asynchronous brain-computer interface	9
Imaging the endocannabinoid signaling system	9
White matter and latency of visual evoked potentials during maturation: A miniature pig model of adolescent development	9
Increased maturation of iPSC-derived neurons in a hydrogel-based 3D culture	9
High quality, high throughput, and low-cost simultaneous video recording of 60 animals in operant chambers using PiRATeMC	9
Transduction profiles in minipig following MRI guided delivery of AAV-5 into thalamic and corona radiata areas	9
A novel 5D brain parcellation approach based on spatio-temporal encoding of resting fMRI data from deep residual learning	9
Cohesive parcellation of the human brain using resting-state fMRI	8
Electrophysiological and morphological characterization of single neurons in intact human brain organoids	8
Genetically encoded sensors towards imaging cAMP and PKA activity in vivo	8
Methods for intratumoral microdialysis probe targeting and validation in murine brain tumor models	8

Chronic recording of cortical activity underlying vocalization in awake minipigs	8
An automated planar patch-clamp approach to measure the membrane potential and resting membrane currents in a human cerebrovascular endothelial cell line	8
A review on Alzheimer’s disease classification from normal controls and mild cognitive impairment using structural MR images	8
ST-SHAP: A hierarchical and explainable attention network for emotional EEG representation learning and decoding	8
Editorial Board	8
Non-invasive brain stimulation to assess neurophysiologic underpinnings of lower limb motor impairment in multiple sclerosis	8
A conditional GABAergic synaptic vesicle marker for Drosophila	8
Measuring the replicability of our own research	8
Quantifying population-level neural tuning functions using Ricker wavelets and the Bayesian bootstrap	8
Affinity of structural white matter tracts between infant and adult pig	8
How to study sleep apneas in mouse models of human pathology	8
Full-field exposure of larval zebrafish to narrow waveband LED light sources at defined power and energy for optogenetic applications	8
Modular and state-relevant functional network connectivity in high-frequency eyes open vs eyes closed resting fMRI data	8
Mapping and quantifying neuropeptides in the enteric nervous system	7
Editorial Board	7
Connections of the sheep basolateral amygdala: A diffusion tensor imaging study	7
Extraction of the GVS electrical artifact from EEG recordings of the motor related cortical potential	7
Multimodal predictive modeling: Scalable imaging informed approaches to predict future brain health	7
A partial habituation method to test for anterograde and retrograde amnestic treatment effects: Evidence that antagonism of the NMDA receptor can induce anterograde but not retrograde amnestic effects	7
Optimizing multivariate pattern classification in rapid event-related designs	7
A novel 4-cell in-vitro blood-brain barrier model and its characterization by confocal microscopy and TEER measurement	7
Development and optimization of an effective method for evaluating habituation learning behavior in larval zebrafish	7
Decoding Autism: Uncovering patterns in brain connectivity through sparsity analysis with rs-fMRI data	7
Multiple averaged records to identify Aδ-fibers in sensory nerves	7
Improvement of olfactory fMRI activation and hemodynamic response function curve with respiration correction	7
High-frequency changes in single-trial visual evoked potentials for unattended stimuli in chronic schizophrenia	7
Effect of motion state variability on error-related potentials during continuous feedback paradigms and their consequences for classification	7
A novel 3D-printed multi-driven system for large-scale neurophysiological recordings in multiple brain regions	7
Editorial Board	7
FB-EEGNet: A fusion neural network across multi-stimulus for SSVEP target detection	7
Operant conditioning with a stimulus discrimination: An alternative method for evaluating alcohol reinforcement in preweaning rats	7
Quantifying defensive behavior and threat response through integrated headstage accelerometry	7
Recognizable rehabilitation movements of multiple unilateral upper limb: An fMRI study of motor execution and motor imagery	7
Editorial Board	7
A method for detecting spatiotemporal patterns of cancer biomarkers-evoked activity using radial basis function network extracted time-domain features from calcium imaging data	7
A fast and efficient method for isolating and culturing enteric neural precursor cells from adult mouse colon	7
Evaluating blood-brain barrier disruption and infarction volume concurrently in rats subjected to ischemic stroke using an optical imaging system	7
Crispr/Cas-based modeling of NF2 loss in meningioma cells	7
Phenomenological model of auditory nerve population responses to cochlear implant stimulation	7
Editorial Board	7
Comparative study of attention-related features on attention monitoring systems with a single EEG channel	7
Editorial Board	7
Feasibility of ultrasound-induced blood-brain barrier disruption with a single-element transducer under three different frequencies in two non-human primates in vivo: Case report	7
Intracellular neural control of an active feeding structure in Aplysia using a carbon fiber electrode array	7
Food preference assay in male and female C57BL/6 mice	7
Development of a vestibular schwannoma tumor slice model for pharmacological testing	7
Multimodal active subspace analysis for computing assessment oriented subspaces from neuroimaging data	6
Editorial Board	6
Using a new phase-locked visual feedback protocol to affirm simpler models for alpha dynamics	6
Multisite silicon probes enable simultaneous recording of spontaneous and evoked activity in multiple isolated C-fibres in rat saphenous nerve	6
Generation of induced pluripotent stem cells from rat fibroblasts and optimization of its differentiation into mature functional neurons	6
Ex-vivo systems for neuromodulation: A comparison of ex-vivo and in-vivo large animal nerve electrophysiology	6
Editorial Board	6
Simulation of background neuronal activity and noise in human intracranial microwire recordings	6
Combining voltage-sensitive dye, carbon fiber array, and extracellular nerve electrodes using a 3-D printed recording chamber and manipulators	6
A biophysically constrained brain connectivity model based on stimulation-evoked potentials.	6
A novel stimulator to investigate the tuning of multi-whisker responsive neurons for speed and the direction of global motion: Contact-sensitive moving stimulator for multi-whisker stimulation	6
Functional connectomes incorporating phase synchronization for the characterization and prediction of individual differences	6
Use of a stable and solvent-soluble variant of Amylo-Glo, Amylo-Glo+, for the high-contrast and resolution fluorescent localization of amyloid plaques in murine and human brain tissue sections	6
Wide field block face imaging using deep ultraviolet induced autofluorescence of the human brain	6
Editorial Board	6
Consistency of independent component analysis for FMRI	6
EEG based emotion recognition by hierarchical bayesian spectral regression framework	6
Editorial Board	6
A new method for preparing single-cell nuclear suspension of frozen spinal cord tissue	6
Imaging and analysis of neuronal mitochondria in murine acute brain slices	6
Biophoton imaging identification of delayed functional neural circuit injury after cerebral ischemia-reperfusion	6
A novel global ischemia-reperfusion rat model with asymmetric brain damage simulating post-cardiac arrest brain injury	6
Tissue oxygen partial pressure as a viability metric for ex vivo brain tissue slices	6
ReachingBot: An automated and scalable benchtop device for highly parallel Single Pellet Reach-and-Grasp training and assessment in mice	6
Editorial Board	6
Detecting slow eye movements using multi-scale one-dimensional convolutional neural network for driver sleepiness detection	6
TAAC - TMS Adaptable Auditory Control: A universal tool to mask TMS clicks	5
Whole-mount staining of neuromuscular junctions in adult mouse diaphragms with a sandwich-like apparatus	5
Editorial Board	5
Slowly conducting potentials in human sensory nerves	5
Moving back in the brain to drive the field forward: Targeting neurostimulation to different brain regions in animal models of depression and neurodegeneration	5
The reliability of two prospective cortical biomarkers for pain: EEG peak alpha frequency and TMS corticomotor excitability	5
Proliferation of SH-SY5Y neuroblastoma cells on confined spaces	5
Sparse representation of complex-valued fMRI data based on spatiotemporal concatenation of real and imaginary parts	5
A new method to study learning and memory using spontaneous locomotor activity in an open-field arena	5
Wide-angle, monocular head tracking using passive markers	5
Determining the optimal expression method for dual-color imaging	5
Pushing the boundaries of brain-computer interfacing (BCI) and neuron-electronics	5
Cross-subject emotion recognition in brain-computer interface based on frequency band attention graph convolutional adversarial neural networks	5
Toolkit for Oscillatory Real-time Tracking and Estimation (TORTE)	5
A method for estimating and characterizing explicitly nonlinear dynamic functional network connectivity in resting-state fMRI data	5
The diagnosis of amnestic mild cognitive impairment by combining the characteristics of brain functional network and support vector machine classifier	5
The role of neuronavigation in TMS–EEG studies: Current applications and future perspectives	5
A quality control pipeline for probabilistic reconstruction of white-matter pathways	5
TMS-EEG responses across the lifespan: Measurement, methods for characterisation and identified responses	5
Neuronal network inference and membrane potential model using multivariate Hawkes processes	5
Spatial-frequency-temporal convolutional recurrent network for olfactory-enhanced EEG emotion recognition	5
Development of a novel three-dimensional injection guide for trigeminal ganglia	5
Peaglet: A user-friendly probabilistic Kernel density estimation of intracranial cortical and subcortical stimulation sites	5