OOIR: Observatory of International Research

Papers

(The median citation count of Plasmid is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-03-01 to 2024-03-01.)

Article	Citations
Structures bounded by directly-oriented members of the IS26 family are pseudo-compound transposons.	51
Contemporary IncI1 plasmids involved in the transmission and spread of antimicrobial resistance in Enterobacteriaceae	51
The role of hosts, plasmids and environment in determining plasmid transfer rates: A meta-analysis	38
Improved pEKEx2-derived expression vectors for tightly controlled production of recombinant proteins in Corynebacterium glutamicum	20
Bacteriophages as sources of small non-coding RNA molecules	18
Estimating plasmid conjugation rates: A new computational tool and a critical comparison of methods	18
Tailor-made sRNAs: a plasmid tool to control the expression of target mRNAs in Pseudomonas putida	17
Strong synthetic stationary phase promoter-based gene expression system for Escherichia coli	16
Construction of a novel dual-inducible duet-expression system for gene (over)expression in Pseudomonas putida	14
Mobile genetic elements beyond the VanB-resistance dissemination among hospital-associated enterococci and other Gram-positive bacteria	11
Evolution of Acinetobacter baumannii plasmids carrying the oxa58 carbapenemase resistance gene via plasmid fusion, IS26-mediated events and dif module shuffling	11
ORF-based binarized structure network analysis of plasmids (OSNAp), a novel approach to core gene-independent plasmid phylogeny	10
Construction of a novel CRISPRi-based tool for silencing of multiple genes in Mycobacterium tuberculosis	10
Evolution and dissemination of L and M plasmid lineages carrying antibiotic resistance genes in diverse Gram-negative bacteria	10
Plasmid classifications	10
Genomic islands related to Salmonella genomic island 1; integrative mobilisable elements in trmE mobilised in trans by A/C plasmids	10
The cell-penetrating YopM protein-functionalized quantum dot-plasmid DNA conjugate as a novel gene delivery vector	9
Plasmidome of an environmental Acinetobacter lwoffii strain originating from a former gold and arsenic mine	8
The ever-expanding tcp conjugation locus of pCW3 from Clostridium perfringens	8
Simultaneous transformation of five vectors in Gluconobacter oxydans	7
Replication initiator proteins of Acinetobacter baumannii plasmids: An update note	6
Antimicrobial resistance gene shuffling and a three-element mobilisation system in the monophasic Salmonella typhimurium strain ST1030	6
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms	6
Characterization of blaCMY-2-carrying IncC and rmtB-carrying IncI1/ST136 plasmids in an avian Escherichia coli ST224 strain	6
Insights into the individual evolutionary origins of Yersinia virulence factor effector proteins	5

Quantifying plasmid dynamics using single-cell microfluidics and image bioinformatics	5
Genomic analysis of plasmid content in food isolates of E. coli strongly supports its role as a reservoir for the horizontal transfer of virulence and antibiotic resistance genes	5
Characterization of the Agrobacterium octopine-cucumopine catabolic plasmid pAtAg67	4
Formation of new PHE plasmids in pseudomonads in a phenol-polluted environment	4
Incompatibility and phylogenetic relationship of I-complex plasmids	4
SSR identification and phylogenetic analysis in four plant species based on complete chloroplast genome sequences	4
Transcriptomic analysis of Entamoeba histolytica reveals domain-specific sense strand expression of LINE-encoded ORFs with massive antisense expression of RT domain	4
Screening of CHO-K1 endogenous promoters for expressing recombinant proteins in mammalian cell cultures	4
An overview of plasmid transfer in the plant microbiome	4
Frequency and diversity of small plasmids in mesophilic Aeromonas isolates from fish, water and sediment	4
Novel class 1 integron harboring antibiotic resistance genes in wastewater-derived bacteria as revealed by functional metagenomics	4
Reprogramming Targeted-Antibacterial-Plasmids (TAPs) to achieve broad-host range antibacterial activity	4
Evolution of IS26-bounded pseudo-compound transposons carrying the tet(C) tetracycline resistance determinant	3
Identification and characterization of a spreadable IncI1 plasmid harbouring a blaCTX-M-15 gene in an Italian human isolate of Salmonella serovar Napoli	3
Cloning of pAhX22, a small cryptic plasmid from Aeromonas hydrophila, and construction of a pAhX22-derived shuttle vector	3
Guidelines for the estimation and reporting of plasmid conjugation rates	3
Incorporating the plasmidome into antibiotic resistance surveillance in animal agriculture	2
Molecular characterization of two novel NDM-1-producing atypical enteroaggregative Escherichia coli isolates from patients	2
An X1α plasmid from a Salmonella enterica serovar Ohio isolate carrying a novel IS26-bounded tet(C) pseudo-compound transposon	2
Plasmid localization of sole rrn operon in genomes of Oecophyllibacter saccharovorans (Acetobacteraceae)	2
IS26-mediated loss of the translocatable unit from Tn4352B requires the presence of the recA1 allele	2
IncFV plasmid pED208: Sequence analysis and evidence for translocation of maintenance/leading region proteins through diverse type IV secretion systems	2
The extrachromosomal elements of the Naegleria genus: How little we know	2
Novel conditional plasmids regulated by chemical switches provide versatile tools for genetic engineering in Escherichia coli	2
Utilization of a tetracycline-inducible system for high-level expression of recombinant proteins in Francisella tularensis LVS	2
Can SGI1 family integrative mobilizable elements overcome entry exclusion exerted by IncA and IncC plasmids on IncC plasmids?	2
The extensively antibiotic resistant ST111 Acinetobacter baumannii isolate RBH2 carries an extensive mobile element complement of plasmids, transposons and insertion sequences	1
An easily modifiable conjugative plasmid for studying horizontal gene transfer	1
Plasmidome analysis of a hospital effluent biofilm: Status of antibiotic resistance	1
Sequence polarity between the promoter and the adjacent gene modulates promoter activity	1
In-silico functional analysis of hypothetical proteins from Lactiplantibacillus plantarum plasmids reveals enrichment of cell envelope proteins	1
Enhancement of transgene expression by the β-catenin inhibitor iCRT14	1
Implementation of a tunable t-CRISPRi system for gene regulation in Giardia duodenalis	1
One-step construction of a food-grade expression system based on the URA3 gene in Kluyveromyces lactis	1
Effect of the S008-sgaCD operon on IncC plasmid stability in the presence of SGI1-K or absence of an SGI1 variant	1
The fluorination effect on the transfection efficacy of cell penetrating peptide complexes	1
Conjugation-mediated transfer of pXO16, a large plasmid from Bacillus thuringiensis sv. israelensis, across the Bacillus cereus group and its impact on host phenotype	1
Brick into the Gateway (BiG): A novel approach for faster cloning combining Golden Gate and Gateway methods	1
Carriage of three plasmids in a single human clinical isolate of Clostridioides difficile	1
Interference of ISEcp1-blaCTX-M-1 with the shufflon rearrangement in IncI1 plasmids	1