Bulletin of Mathematical Biology

Article	Citations
Turing Instabilities and Rotating Spiral Waves in Glycolytic Processes	45
3D Genome Reconstruction from Partially Phased Hi-C Data	34
Epidemic Management via Imperfect Testing: A Multi-criterial Perspective	31
Bayesian Inference of Phylogenetic Distances: Revisiting the Eigenvalue Approach	28
A Hybrid Epidemic Model to Explore Stochasticity in COVID-19 Dynamics	26
RNA Secondary Structures with Given Motif Specification: Combinatorics and Algorithms	24
Range Shifts Under Constant-Speed and Accelerated Climate Warming	23
A Mathematical Study of the Role of tBregs in Breast Cancer	18
An Age-Structured Model for Tilapia Lake Virus Transmission in Freshwater with Vertical and Horizontal Transmission	18
Bayesian-Weighted Triplet and Quartet Methods for Species Tree Inference	17
Compartmental Model Suggests Importance of Innate Immune Response to COVID-19 Infection in Rhesus Macaques	16
Model-Based Projection of Zika Infection Risk with Temperature Effect: A Case Study in Southeast Asia	16
Generalized Stressors on Hive and Forager Bee Colonies	14
Modeling the Interplay Between Seasonal Flu Outcomes and Individual Vaccination Decisions	14
The Effects of Migration and Limited Medical Resources of the Transmission of SARS-CoV-2 Model with Two Patches	14
Modeling and Evaluation of the Joint Prevention and Control Mechanism for Curbing COVID-19 in Wuhan	14
Dynamics of Lotka–Volterra Competition Patch Models in Streams with Two Branches	14
A Coupled Statistical and Deterministic Model for Forecasting Climate-Driven Dengue Incidence in Selangor, Malaysia	14
Biophysical Models of PAR Cluster Transport by Cortical Flow in C. elegans Early Embryogenesis	14
Performance Study of Two Serial Interconnected Chemostats with Mortality	14
Stochastic Modeling of In Vitro Bactericidal Potency	14
Connecting Agent-Based Models with High-Dimensional Parameter Spaces to Multidimensional Data Using SMoRe ParS: A Surrogate Modeling Approach	13
Statistical Mobility of Multicellular Colonies of Flagellated Swimming Cells	13
Special Tributes	12
Predicting the Behavior of Sparsely-Sampled Systems Across Neurobiology and Epidemiology	12

A Diffusion-Based Approach for Simulating Forward-in-Time State-Dependent Speciation and Extinction Dynamics	12
Effect of Buffers with Multiple Binding Sites on Calcium Waves	12
The Influence of Nucleus Mechanics in Modelling Adhesion-independent Cell Migration in Structured and Confined Environments	12
Mathematical Assessment of the Role of Human Behavior Changes on SARS-CoV-2 Transmission Dynamics in the United States	12
Invasiveness of a Growth-Migration System in a Two-dimensional Percolation cluster: A Stochastic Mathematical Approach	12
Phylogenetic Diversity Indices from an Affine and Projective Viewpoint	12
Analysing the Effect of Test-and-Trace Strategy in an SIR Epidemic Model	11
Predator–Prey Evolution from an Eco-evolutionary Trade-off Model: The Role of Trait Differentiation	11
Mathematical Modeling of Tumor and Cancer Stem Cells Treated with CAR-T Therapy and Inhibition of TGF-$$\beta $$	11
Mathematical Models of Early Hepatitis B Virus Dynamics in Humanized Mice	11
Threshold Dynamics in a Model for Zika Virus Disease with Seasonality	11
Dynamical Differences in Respiratory Syncytial Virus	11
From Policy to Prediction: Forecasting COVID-19 Dynamics Under Imperfect Vaccination	10
Alternative Strategies for the Estimation of a Disease’s Basic Reproduction Number: A Model-Agnostic Study	10
Bifurcation and Pattern Formation in an Activator–Inhibitor Model with Non-local Dispersal	10
The Tumor Invasion Paradox in Cancer Stem Cell-Driven Solid Tumors	10
Algebra, Geometry and Topology of ERK Kinetics	10
A Multigenerational Turing Model Reproduces Transgressive Petal Spot Phenotypes in Hybrid Mimulus	10
Assortment and Reciprocity Mechanisms for Promotion of Cooperation in a Model of Multilevel Selection	10
Forest-Based Networks	10
Atto-Foxes and Other Minutiae	10
A Mathematical Description of Bacterial Chemotaxis in Response to Two Stimuli	10
Stability Analysis of a Signaling Circuit with Dual Species of GTPase Switches	10
Disease-Induced Hydra Effect with Overcompensatory Recruitment	10
Sexual Dimorphism in Substrate Metabolism During Exercise	9
Assessing the Role of Patient Generation Techniques in Virtual Clinical Trial Outcomes	9
Turing Pattern Formation in Reaction-Cross-Diffusion Systems with a Bilayer Geometry	9
The Shape of Phylogenies Under Phase-Type Distributed Times to Speciation and Extinction	9
Making Predictions Using Poorly Identified Mathematical Models	9
How Cells Stay Together: A Mechanism for Maintenance of a Robust Cluster Explored by Local and Non-local Continuum Models	9
Effect of Population Partitioning on the Probability of Silent Circulation of Poliovirus	9
Modelling Role of Protective and Nonprotective HLA Allele Inducing Different HIV Infection Outcomes	9
Evolution of dispersal in river networks	9
The Impact of Phenotypic Heterogeneity on Chemotactic Self-Organisation	9
Impacts of Vaccination and Severe Acute Respiratory Syndrome Coronavirus 2 Variants Alpha and Delta on Coronavirus Disease 2019 Transmission Dynamics in Four Metropolitan Areas of the United States	9
Coevolution of Age-Structured Tolerance and Virulence	9
Approximating Quasi-Stationary Behaviour in Network-Based SIS Dynamics	8
Modelling Radiation Cancer Treatment with a Death-Rate Term in Ordinary and Fractional Differential Equations	8
ATM and ATR Activation Through Crosstalk Between DNA Damage Response Pathways	8
Order-of-Mutation Effects on Cancer Progression: Models for Myeloproliferative Neoplasm	8
Control Strategies for a Multi-strain Epidemic Model	8
Effects of Elasticity on Cell Proliferation in a Tissue-Engineering Scaffold Pore	8
Correction to: Mathematical Modelling of Alternative Pathway of Complement System	8
Emergent Lag Phase in Flux-Regulation Models of Bacterial Growth	8
Dynamics of Stoichiometric Autotroph–Mixotroph–Bacteria Interactions in the Epilimnion	8
The Signature of Endemic Populations in the Spread of Mountain Pine Beetle Outbreaks	8
A Coupled Spatial-Network Model: A Mathematical Framework for Applications in Epidemiology	8
Correction to: Oscillations and Pattern Formation in a Slow–Fast Prey–Predator System	8
Dynamics of Antibody Binding and Neutralization during Viral Infection	7
Measles Infection Dose Responses: Insights from Mathematical Modeling	7

Evolutionary Game Dynamics with Environmental Feedback in a Network with Two Communities	7
Tumor Evolution Models of Phase-Field Type with Nonlocal Effects and Angiogenesis	7
Bifurcation Analysis of a Heat-Sensitive Epigenetic Regulatory Network	7
The Post-Kelly Strategy: A Negative Feedback Model of Reallocating Ant Foragers	7
Computational Model of the Effect of Mitochondrial Dysfunction on Excitation–Contraction Coupling in Skeletal Muscle	7
An Epidemic Model with Time-Distributed Recovery and Death Rates	7
A Zika Endemic Model for the Contribution of Multiple Transmission Routes	7
A Data-Informed Mathematical Model of Microglial Cell Dynamics During Ischemic Stroke in the Middle Cerebral Artery	7
Discontinuity-Induced Dynamics in the Conductance-Based Adaptive Exponential Integrate-and-Fire Model	7
Resonance in Physiologically Structured Population Models	7
Identifying Markov Chain Models from Time-to-Event Data: An Algebraic Approach	7
Non-spatial Dynamics and Spatiotemporal Patterns Formation in a Predator–Prey Model with Double Allee and Dome-shaped Response Function	7
A Hypothesis-Free Bridging of Disease Dynamics and Non-pharmaceutical Policies	7
Long-Term Forecast of HIV/AIDS Epidemic in China with Fear Effect and 90-90-90 Strategies	7
0–1 Laws for Pattern Occurrences in Phylogenetic Trees and Networks	6
A Hybrid Discrete–Continuum Modelling Approach to Explore the Impact of T-Cell Infiltration on Anti-tumour Immune Response	6
Dynamics of Competitive Systems with Diffusion Between Source–Sink Patches	6
A Stage-Structured Continuous-/Discrete-Time Population Model: Persistence and Spatial Spread	6
Modelling Preferential Phagocytosis in Atherosclerosis: Delineating Timescales in Plaque Development	6
Cost Optimisation of Individual-Based Institutional Reward Incentives for Promoting Cooperation in Finite Populations	6
Combinatorial Cooperativity in miR200-Zeb Feedback Network can Control Epithelial–Mesenchymal Transition	6
The Role of Movement Patterns in Epidemic Models on Complex Networks	6
Model-Based Estimation of Expected Time to Cholera Extinction in Lusaka, Zambia	6
Inhibitor-Induced Wavetrains and Spiral Waves in an Extended FitzHugh–Nagumo Model of Nerve Cell Dynamics	6
Predicting Long-Term Asbestos Prevalence in Human Lungs, Lymph Nodes, and Remote Organs from Short-Term Murine Experiments	6
A Multiscale Model of COVID-19 Dynamics	6
Parameter Identifiability in PDE Models of Fluorescence Recovery After Photobleaching	6
A New Method for Low Density Distribution Modeling and Near Threatened Species: The Study Case of Plectrohyla Guatemalensis	6
The Role of Stochasticity in Noise-Induced Tipping Point Cascades: A Master Equation Approach	6
The Role of Antigen-Competitive Dynamics in Regulating the Immune Response	6
Ribosome Abundance Control in Prokaryotes	6
The Effect of Harvesting Adults on the Evolution of Reproduction Age Via Density-Dependent Juvenile Mortality	6
Maximum Likelihood Estimation for Unrooted 3-Leaf Trees: An Analytic Solution for the CFN Model	6
On the Validity of the Stochastic Quasi-Steady-State Approximation in Open Enzyme Catalyzed Reactions: Timescale Separation or Singular Perturbation?	6
An Adaptive Generalized Leaky Integrate-and-Fire Model for Hippocampal CA1 Pyramidal Neurons and Interneurons	5
Comparison Theorems for Stochastic Chemical Reaction Networks	5
Evolving Improved Sampling Protocols for Dose–Response Modelling Using Genetic Algorithms with a Profile-Likelihood Metric	5
Special Collection: Celebrating J.D. Murray’s Contributions to Mathematical Biology	5
Effects of Stage Structure on Coexistence: Mixed Benefits	5
Rearrangement Events on Circular Genomes	5
Modeling the Development of Cellular Exhaustion and Tumor-Immune Stalemate	5
Comparing Short-Term Univariate and Multivariate Time-Series Forecasting Models in Infectious Disease Outbreak	5
An Agent-Based Model of Biting Midge Dynamics to Understand Bluetongue Outbreaks	5
Discrete Models in Epidemiology: New Contagion Probability Functions Based on Real Data Behavior	5
Transmission Dynamics of Tuberculosis with Age-specific Disease Progression	5
A Mean-Field Approximation of SIR Epidemics on an Erdös–Rényi Network Model	5
Autopolyploidy, Allopolyploidy, and Phylogenetic Networks with Horizontal Arcs	5
Modeling Antiretrovial Treatment to Mitigate HIV in the Brain: Impact of the Blood-Brain Barrier	5
The Role of Permanently Resident Populations in the Two-Patches SIR Model with Commuters	5
Collective Oscillations in Coupled-Cell Systems	5
How Residual Fertility Impacts the Efficiency of Crop Pest Control by the Sterile Insect Technique	5
A Model for Membrane Degradation Using a Gelatin Invadopodia Assay	5
Testing and Isolation Efficacy: Insights from a Simple Epidemic Model	5
Probability Distribution of Tree Age for the Simple Birth–Death Process, with Applications to Distributions of Number of Ancestral Lineages and Divergence Times for Pairs of Taxa in a Yule Tree	5
Does Counting Different Life Stages Impact Estimates for Extinction Probabilities for Tsetse (Glossina spp)?	5
The Dynamics of Pasture–Herbivores–Carnivores with Sigmoidal Density Dependent Harvesting	5
Mathematical Analysis of Epidemic Models with Treatment in Heterogeneous Networks	5
Ecosystem Knowledge Should Replace Coexistence and Stability Assumptions in Ecological Network Modelling	4
Transient Propagation of the Invasion Front in the Homogeneous Landscape and in the Presence of a Road	4
On the Comparison of Incompatibility of Split Systems Across Different Numbers of Taxa	4
Impulsive Fire Disturbance in a Savanna Model: Tree–Grass Coexistence States, Multiple Stable System States, and Resilience	4
Minimal Mechanisms of Microtubule Length Regulation in Living Cells	4
Evolutionary Invasion Analysis of Modern Epidemics Highlights the Context-Dependence of Virulence Evolution	4
Orchard Networks are Trees with Additional Horizontal Arcs	4
VisualPDE: Rapid Interactive Simulations of Partial Differential Equations	4
Mathematical Modelling Highlights the Potential for Genetic Manipulation as an Adjuvant to Counter Efflux-Mediated MDR in Salmonella	4
Parameter Estimation and Identifiability in Kinetic Flux Profiling Models of Metabolism	4
Pretty Darn Good Control: When are Approximate Solutions Better than Approximate Models	4
Invading and Receding Sharp-Fronted Travelling Waves	4
Breast Cancer Exosomal microRNAs Facilitate Pre-Metastatic Niche Formation in the Bone: A Mathematical Model	4
Effects of Heterogeneity on Cancer: A Game Theory Perspective	4
Modeling the Growth and Size Distribution of Human Pluripotent Stem Cell Clusters in Culture	4
A Stochastic Model of Cortical Microtubule Anchoring and Mechanics Provides Regulatory Control of Microtubule Shape	4
Transition Therapy: Tackling the Ecology of Tumor Phenotypic Plasticity	4
Source-Sink Dynamics in a Two-Patch SI Epidemic Model with Life Stages and No Recovery from Infection	4
Evolution and Adaptation of Anti-predation Response of Prey in a Two-Patchy Environment	4
Local Identifiability Analysis, Parameter Subset Selection and Verification for a Minimal Brain PBPK Model	4
Mechanical Cell Interactions on Curved Interfaces	4
A Model for the Coexistence of Competing Mechanisms for $$\text {Ca}^{\text {2}+}$$ Oscillations in T-lymphocytes	4
A Computational Framework for the Administration of 5-Aminovulinic Acid Before Glioblastoma Surgery	4

Effect of Movement on the Early Phase of an Epidemic	4
Host Diversification May Split Epidemic Spread into Two Successive Fronts Advancing at Different Speeds	4
A Lipid-Structured Model of Atherosclerosis with Macrophage Proliferation	4
Design Principles for Perfect Adaptation in Biological Networks with Nonlinear Dynamics	4
The Effects of Background Noise on a Biophysical Model of Olfactory Bulb Mitral Cells	4
Mathematical Modeling to Guide Experimental Design: T Cell Clustering as a Case Study	4
Targeting CD4+ T cell Exhaustion to Improve Future Immunotherapy Strategies	4
Boolean Models of the Transport, Synthesis, and Metabolism of Tryptophan in Escherichia coli	3
Discretised Flux Balance Analysis for Reaction–Diffusion Simulation of Single-Cell Metabolism	3
Intermittent Hormone Therapy Models Analysis and Bayesian Model Comparison for Prostate Cancer	3
Asymptotic Analysis of Optimal Vaccination Policies	3
Estimation of Rates of Non-neutral Mutations When Bacteria are Exposed to Subinhibitory Levels of Antibiotics	3
Assessing Age-Specific Vaccination Strategies and Post-vaccination Reopening Policies for COVID-19 Control Using SEIR Modeling Approach	3
Mean Field Games for Diel Vertical Migration with Diffusion	3
On the Threshold of Release of Confinement in an Epidemic SEIR Model Taking into Account the Protective Effect of Mask	3
Modeling the Effect of HIV/AIDS Stigma on HIV Infection Dynamics in Kenya	3
Information-Theoretic Analysis of a Model of CAR-4-1BB-Mediated NFκB Activation	3
Tipping Cascades in a Multi-patch System with Noise and Spatial Coupling	3
Isolating Patterns in Open Reaction–Diffusion Systems	3
Modeling Microglia Activation and Inflammation-Based Neuroprotectant Strategies During Ischemic Stroke	3
Untangling the Molecular Interactions Underlying Intracellular Phase Separation Using Combined Global Sensitivity Analyses	3
Analysis of the Geographic Transmission Differences of COVID-19 in China Caused by Population Movement and Population Density	3
Novel Aspects in Pattern Formation Arise from Coupling Turing Reaction–Diffusion and Chemotaxis	3
Vaccination and Quarantine Effect on COVID-19 Transmission Dynamics Incorporating Chinese-Spring-Festival Travel Rush: Modeling and Simulations	3
Mechanical Torque Promotes Bipolarity of the Mitotic Spindle Through Multi-centrosomal Clustering	3
Mathematical Study of a Resource-Based Diffusion Model with Gilpin–Ayala Growth and Harvesting	3
Free and Interfacial Boundaries in Individual-Based Models of Multicellular Biological systems	3
Mathematical Modelling of Dengue Transmission with Intervention Strategies Using Fractional Derivatives	3
A Nonlinear Delay Model for Metabolic Oscillations in Yeast Cells	3
Designing Weights for Quartet-Based Methods When Data are Heterogeneous Across Lineages	3
Why the Spectral Radius? An intuition-building introduction to the basic reproduction number	3
The Impact of Host Abundance on the Epidemiology of Tick-Borne Infection	3
Model Dynamics and Optimal Control for Intervention Policy of COVID-19 Epidemic with Quarantine and Immigrating Disturbances	3
Modeling of Mouse Experiments Suggests that Optimal Anti-Hormonal Treatment for Breast Cancer is Diet-Dependent	3
Systematic Analysis of Emergent Collective Motion Produced by a 3D Hybrid Zonal Model	3
Microeconomics of Metabolism: The Warburg Effect as Giffen Behaviour	3
A Low-Dimensional Network Model for an SIS Epidemic: Analysis of the Super Compact Pairwise Model	3
Vector-Borne Disease Models with Active and Inactive Vectors: A Simple Way to Consider Biting Behavior	3
Controlling Multiple COVID-19 Epidemic Waves: An Insight from a Multi-scale Model Linking the Behaviour Change Dynamics to the Disease Transmission Dynamics	3
Combining Mechanisms of Growth Arrest in Solid Tumours: A Mathematical Investigation	3
Macrophage Anti-inflammatory Behaviour in a Multiphase Model of Atherosclerotic Plaque Development	3
A Comparison of Deterministic and Stochastic Plant-Vector-Virus Models Based on Probability of Disease Extinction and Outbreak	3
Harnessing Flex Point Symmetry to Estimate Logistic Tumor Population Growth	3
Correction to: A Two-Dimensional Model of Potassium Signaling and Oscillatory Growth in a Biofilm	3
A Mathematical Study of Metal Biosorption on Algal–Bacterial Granular Biofilms	3
Relation Between the Number of Peaks and the Number of Reciprocal Sign Epistatic Interactions	3
Variance Reduction with Array-RQMC for Tau-Leaping Simulation of Stochastic Biological and Chemical Reaction Networks	3
Random Search in Fluid Flow Aided by Chemotaxis	3
Oscillations and Pattern Formation in a Slow–Fast Prey–Predator System	3
Patient-Specific Modelling of Blood Coagulation	3
Mathematical Modeling of Mating Probability and Fertile Egg Production in Helminth Parasites	2
Modeling of Symbiotic Bacterial Biofilm Growth with an Example of the Streptococcus–Veillonella sp. System	2
Integrating Diversity, Equity, and Inclusion into Preclinical, Clinical, and Public Health Mathematical Models	2
Mosquito Control Based on Pesticides and Endosymbiotic Bacterium Wolbachia	2
Fixed and Distributed Gene Expression Time Delays in Reaction–Diffusion Systems	2
Characterizing Long Transients in Consumer–Resource Systems With Group Defense and Discrete Reproductive Pulses	2
A Mathematical Model of TCR-T Cell Therapy for Cervical Cancer	2
A Refunding Scheme to Incentivize Narrow-Spectrum Antibiotic Development	2
Assessing Markovian and Delay Models for Single-Nucleus RNA Sequencing	2
Modelling Mucus Clearance in Sinuses: Thin-Film Flow Inside a Fluid-Producing Cavity Lined with an Active Surface	2
A Data-Driven Mathematical Model of the Heroin and Fentanyl Epidemic in Tennessee	2
Effect of Human Behavior on the Evolution of Viral Strains During an Epidemic	2
Mathematical Derivation of Wave Propagation Properties in Hierarchical Neural Networks with Predictive Coding Feedback Dynamics	2
Stochastic Reaction Networks Within Interacting Compartments	2
The Michaelis–Menten Reaction at Low Substrate Concentrations: Pseudo-First-Order Kinetics and Conditions for Timescale Separation	2
Bounds on the Ultrasensitivity of Biochemical Reaction Cascades	2
A Model to Investigate the Impact of Farm Practice on Antimicrobial Resistance in UK Dairy Farms	2
Ancestral Lineages in Mutation Selection Equilibria with Moving Optimum	2
A Mathematical Model Supporting a Hyperpredation Effect in the Apparent Competition Between Invasive Eastern Cottontail and Native European Hare	2
Towards Optimal Control of Amyloid Fibrillation	2
Oviposition Model for a Southern Population of Mountain Pine Beetle	2
Effects of Sterile Males and Fertility of Infected Mosquitoes on Mosquito-Borne Disease Dynamics	2
Simulation of Angiogenesis in Three Dimensions: Development of the Retinal Circulation	2
Balancing Quarantine and Self-Distancing Measures in Adaptive Epidemic Networks	2
A Pressure-Based Model of IV Fluid Therapy Kinetics	2
$$R_0$$ May Not Tell Us Everything: Transient Disease Dynamics of Some SIR Models Over Patchy Environments	2
A Continuum Mathematical Model of Substrate-Mediated Tissue Growth	2
Reduced Models of Cardiomyocytes Excitability: Comparing Karma and FitzHugh–Nagumo	2
Identifiable Paths and Cycles in Linear Compartmental Models	2
Enumeration of Rooted Binary Unlabeled Galled Trees	2
Inferring Stochastic Rates from Heterogeneous Snapshots of Particle Positions	2
Reading Frame Retrieval of Genes: A New Parameter of Codon Usage Based on the Circular Code Theory	2
Quantitative Assessment of a Dual Epidemic Caused by Tuberculosis and HIV in the Philippines	2
Multiscale Modelling of De Novo Anaerobic Granulation	2
Impact of the WHO Integrated Stewardship Policy on the Control of Methicillin-Resistant Staphyloccus aureus and Third-Generation Cephalosporin-Resistant Escherichia coli: Using a Mathematical Modeling	2
A Variational Approach to Morphogenesis	2
Modeling Opioid Abuse: A Case Study of the Opioid Crisis in New England	2
Independent Decompositions of Chemical Reaction Networks	2
Basin Transition and Alternative States: Role of Multi-species Herbivores-Induced Volatile in Plant–Insect Interactions	2
A Kinetic Finite Volume Discretization of the Multidimensional PIDE Model for Gene Regulatory Networks	2
A Model of Gastric Mucosal pH Regulation: Extending Sensitivity Analysis Using Sobol’ Indices to Understand Higher Moments	2
Multi-Cue Kinetic Model with Non-Local Sensing for Cell Migration on a Fiber Network with Chemotaxis	2
Optimal Control of Plant Disease Epidemics with Clean Seed Usage	2
Slow–Fast Model and Therapy Optimization for Oncolytic Treatment of Tumors	2
Models for Implant-Induced Capsular Contracture Post Breast Cancer Surgery	2