Virology

Papers
(The TQCC of Virology is 6. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-02-01 to 2024-02-01.)
ArticleCitations
Growth, detection, quantification, and inactivation of SARS-CoV-2194
The novel coronavirus Disease-2019 (COVID-19): Mechanism of action, detection and recent therapeutic strategies161
Zika virus-spread, epidemiology, genome, transmission cycle, clinical manifestation, associated challenges, vaccine and antiviral drug development93
SARS-CoV-2 viroporin encoded by ORF3a triggers the NLRP3 inflammatory pathway76
Potential APOBEC-mediated RNA editing of the genomes of SARS-CoV-2 and other coronaviruses and its impact on their longer term evolution67
Association of viral load with serum biomakers among COVID-19 cases63
Antiviral activity of lycorine against Zika virus in vivo and in vitro54
Recovery of severely ill COVID-19 patients by intravenous immunoglobulin (IVIG) treatment: A case series49
Programmed −1 Ribosomal Frameshifting in coronaviruses: A therapeutic target42
Insilico study on the effect of SARS-CoV-2 RBD hotspot mutants’ interaction with ACE2 to understand the binding affinity and stability41
The use of cells from ANPEP knockout pigs to evaluate the role of aminopeptidase N (APN) as a receptor for porcine deltacoronavirus (PDCoV)36
On the road to ending the COVID-19 pandemic: Are we there yet?36
Quantifying the effect of remdesivir in rhesus macaques infected with SARS-CoV-233
Glial cell response to Epstein-Barr Virus infection: A plausible contribution to virus-associated inflammatory reactions in the brain32
Viral polymerase binding and broad-spectrum antiviral activity of molnupiravir against human seasonal coronaviruses31
A natural food preservative peptide nisin can interact with the SARS-CoV-2 spike protein receptor human ACE231
Dexamethasone inhibits SARS-CoV-2 spike pseudotyped virus viropexis by binding to ACE229
Characterization and evaluation of the pathogenicity of a natural recombinant transmissible gastroenteritis virus in China29
The development and kinetics of functional antibody-dependent cell-mediated cytotoxicity (ADCC) to SARS-CoV-2 spike protein28
Analytical and clinical comparison of Viasure (CerTest Biotec) and 2019-nCoV CDC (IDT) RT-qPCR kits for SARS-CoV2 diagnosis.28
A reverse-transcription recombinase-aided amplification assay for the rapid detection of N gene of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)28
Incomplete humoral response including neutralizing antibodies in asymptomatic to mild COVID-19 patients in Japan28
New insights into the evolutionary features of viral overlapping genes by discriminant analysis27
The pharmacology of plant virus nanoparticles26
Zika virus NS4A cytosolic region (residues 1–48) is an intrinsically disordered domain and folds upon binding to lipids25
Transmission dynamics between infected waterfowl and terrestrial poultry: Differences between the transmission and tropism of H5N8 highly pathogenic avian influenza virus (clade 2.3.4.4a) among ducks,24
Increased expression of microRNA-155-5p by alveolar type II cells contributes to development of lethal ARDS in H1N1 influenza A virus-infected mice23
Study on SARS-CoV-2 strains in Iran reveals potential contribution of co-infection with and recombination between different strains to the emergence of new strains23
Virome characterization of Cryphonectria parasitica isolates from Azerbaijan unveiled a new mymonavirus and a putative new RNA virus unrelated to described viral sequences22
MiR-BART1-5p targets core 2β-1,6-acetylglucosaminyltransferase GCNT3 to inhibit cell proliferation and migration in EBV-associated gastric cancer22
Transcription profile of human endogenous retroviruses in response to dengue virus serotype 2 infection22
CRISPR-Cas12a combined with reverse transcription recombinase polymerase amplification for sensitive and specific detection of human norovirus genotype GII.421
Evaluation of novobiocin and telmisartan for anti-CHIKV activity21
Influenza D virus diverges from its related influenza C virus in the recognition of 9-O-acetylated N-acetyl- or N-glycolyl-neuraminic acid-containing glycan receptors21
N6-methyladenosine regulates PEDV replication and host gene expression21
Zika virus NS5 nuclear accumulation is protective of protein degradation and is required for viral RNA replication21
Insect-Specific Viruses: An overview and their relationship to arboviruses of concern to humans and animals20
Construction and biological characterization of an infectious full-length cDNA clone of a Chinese isolate of Wheat yellow mosaic virus20
Detecting SARS-CoV-2 3CLpro expression and activity using a polyclonal antiserum and a luciferase-based biosensor20
Expression, purification and immunological characterization of recombinant nucleocapsid protein fragment from SARS-CoV-220
Novel and diverse mycoviruses co-inhabiting the hypogeous ectomycorrhizal fungus Picoa juniperi20
Molecular and serological characterization of SARS-CoV-2 infection among COVID-19 patients19
Coronavirus infection induces progressive restructuring of the endoplasmic reticulum involving the formation and degradation of double membrane vesicles19
Physicochemical effect of the N501Y, E484K/Q, K417N/T, L452R and T478K mutations on the SARS-CoV-2 spike protein RBD and its influence on agent fitness and on attributes developed by emerging variants18
Epstein-Barr virus-encoded miR-BART11 promotes tumor-associated macrophage-induced epithelial-mesenchymal transition via targeting FOXP1 in gastric cancer18
Strain wars 2: Binding constants, enthalpies, entropies, Gibbs energies and rates of binding of SARS-CoV-2 variants18
RNA virome abundance and diversity is associated with host age in a bird species18
Network analysis and molecular mapping for SARS-CoV-2 to reveal drug targets and repurposing of clinically developed drugs18
Analysis of a crucial interaction between the coronavirus nucleocapsid protein and the major membrane-bound subunit of the viral replicase-transcriptase complex17
Krebs von den Lungen-6 (KL-6) as a clinical marker for severe COVID-19: A systematic review and meta-analyses17
Frequency of HLA alleles among COVID-19 infected patients: Preliminary data from Saudi Arabia17
Insights into SARS-CoV-2 evolution, potential antivirals, and vaccines17
Characterization of a novel genomovirus in the phytopathogenic fungus Botrytis cinerea16
Strain wars 4 - Darwinian evolution through Gibbs’ glasses: Gibbs energies of binding and growth explain evolution of SARS-CoV-2 from Hu-1 to BA.216
Molecular characterisation of a novel pathogenic avipoxvirus from an Australian passerine bird, mudlark (Grallina cyanoleuca)16
A plate of viruses: Viral metagenomics of supermarket chicken, pork and beef from Brazil16
Highly pathogenic avian influenza virus H5N6 (clade 2.3.4.4b) has a preferable host tropism for waterfowl reflected in its inefficient transmission to terrestrial poultry16
Mycoviral diversity and characteristics of a negative-stranded RNA virus LeNSRV1 in the edible mushroom Lentinula edodes16
The G614 pandemic SARS-CoV-2 variant is not more pathogenic than the original D614 form in adult Syrian hamsters15
Effectiveness of favipiravir (T-705) against wild-type and oseltamivir-resistant influenza B virus in mice15
Azadirachta indica A. Juss bark extract and its Nimbin isomers restrict β-coronaviral infection and replication15
Pathogenesis of a novel porcine parainfluenza virus type 1 isolate in conventional and colostrum deprived/caesarean derived pigs15
Particle-specific neutralizing activity of a monoclonal antibody targeting the poxvirus A33 protein reveals differences between cell associated and extracellular enveloped virions15
Effect of SARS-CoV-2 coinfection was not apparent on the dynamics of chronic hepatitis B infection15
Structural heterogeneity of a human norovirus vaccine candidate14
RNAseq analysis identifies involvement of EBNA2 in PD-L1 induction during Epstein-Barr virus infection of primary B cells14
Poxvirus encoded eIF2α homolog, K3 family proteins, is a key determinant of poxvirus host species specificity14
Characterization of contemporary 2010.1 H3N2 swine influenza A viruses circulating in United States pigs14
Novel anti-flavivirus drugs targeting the nucleolar distribution of core protein14
The phylogeographic history of tomato mosaic virus in Eurasia14
Isolation of a novel insect-specific flavivirus with immunomodulatory effects in vertebrate systems14
Membrane binding and rearrangement by chikungunya virus capping enzyme nsP113
T-cell immunoglobulin and mucin (TIM) contributes to the infection of human airway epithelial cells by pseudotype viruses containing Hantaan virus glycoproteins13
The viral suppressor HCPro decreases DNA methylation and activates auxin biosynthesis genes13
Cryphonectria nitschkei chrysovirus 1 with unique molecular features and a very narrow host range13
Complex evolutionary history of felid anelloviruses13
Single nucleotide polymorphism (SNP) frequencies and distribution reveal complex genetic composition of seven novel natural isolates of Cydia pomonella granulovirus13
Gut microbiota is associated with protection against Marek's disease virus infection in chickens13
Spondweni virus causes fetal harm in Ifnar1 mice and is transmitted by Aedes aegypti mosquitoes12
SARS-CoV-2 and other coronaviruses bind to phosphorylated glycans from the human lung12
Sheep in wolves’ clothing: Temperate T7-like bacteriophages and the origins of the Autographiviridae12
Exploring the efficacy of naturally occurring biflavone based antioxidants towards the inhibition of the SARS-CoV-2 spike glycoprotein mediated membrane fusion12
Plant SNAREs SYP22 and SYP23 interact with Tobacco mosaic virus 126 kDa protein and SYP2s are required for normal local virus accumulation and spread12
Epithelial-mesenchymal transition of absorptive enterocytes and depletion of Peyer's patch M cells after PEDV infection12
No evidence of HEV genotype 1 infections harming the male reproductive system12
Identification and evaluation of antiviral potential of thymoquinone, a natural compound targeting Chikungunya virus capsid protein12
Diverse single-stranded DNA viruses identified in New Zealand (Aotearoa) South Island robin (Petroica australis) fecal samples12
Labyrinthopeptin A1 inhibits dengue and Zika virus infection by interfering with the viral phospholipid membrane12
‘PmLyO-Sf9 - WSSV complex’ could be a platform for elucidating the mechanism of viral entry, cellular apoptosis and replication impediments11
Effects of tumor necrosis factor on viral replication and pulmonary inflammation during acute mouse adenovirus type 1 respiratory infection11
Genomic evolution of the Coronaviridae family11
Identification of potential COVID-19 treatment compounds which inhibit SARS Cov2 prototypic, Delta and Omicron variant infection11
Anterograde transport of α-herpesviruses in neuronal axons11
Diverse cressdnaviruses and an anellovirus identified in the fecal samples of yellow-bellied marmots11
Genetic signatures for lineage/sublineage classification of HPV16, 18, 52 and 58 variants11
Acute porcine epidemic diarrhea virus infection reshapes the intestinal microbiota11
Hepatitis E viral infection causes testicular damage in mice11
The human papillomavirus 16 E5 gene potentiates MmuPV1-Dependent pathogenesis11
Inhibition of porcine epidemic diarrhea virus (PEDV) replication by A77 1726 through targeting JAK and Src tyrosine kinases11
Zika virus infects Aedes aegypti ovaries10
Azelastine inhibits viropexis of SARS-CoV-2 spike pseudovirus by binding to SARS-CoV-2 entry receptor ACE210
Chalcid wasp paleoviruses bridge the evolutionary gap between bracoviruses and nudiviruses10
Lipopolysaccharide restricts murine norovirus infection in macrophages mainly through NF-kB and JAK-STAT signaling pathway10
xCT/SLC7A11 antiporter function inhibits HIV-1 infection10
Upregulation of FOXP3 is associated with severity of hypoxia and poor outcomes in COVID-19 patients10
Gist of Zika Virus pathogenesis10
Viral metagenomics in Brazilian Pekin ducks identifies two gyrovirus, including a new species, and the potentially pathogenic duck circovirus10
Revisiting the amalgaviral landscapes in plant transcriptomes expands the host range of plant amalgaviruses10
H5N1 highly pathogenic avian influenza clade 2.3.4.4b in wild and domestic birds: Introductions into the United States and reassortments, December 2021–April 202210
Metabolic shifts modulate lung injury caused by infection with H1N1 influenza A virus10
Pathogenesis and infection dynamics of high pathogenicity avian influenza virus (HPAIV) H5N6 (clade 2.3.4.4b) in pheasants and onward transmission to chickens10
De novo modelling of HEV replication polyprotein: Five-domain breakdown and involvement of flexibility in functional regulation10
Development of a blocker of the universal phosphatidylserine- and phosphatidylethanolamine-dependent viral entry pathways9
Understanding the mechanism of action of cytomegalovirus-induced regulatory T cells9
Human group A rotavirus P[25] VP8* specifically binds to A-type histo-blood group antigen9
The interplay of viral loads, clinical presentation, and serological responses in SARS-CoV-2 – Results from a prospective cohort of outpatient COVID-19 cases9
Cross protection by inactivated recombinant influenza viruses containing chimeric hemagglutinin conjugates with a conserved neuraminidase or M2 ectodomain epitope9
Aspartic acid at residue 185 modulates the capacity of HP-PRRSV nsp4 to antagonize IFN-I expression9
Functional identification of a novel C7 protein of tomato yellow leaf curl virus9
Processing of the capsid proteins of the Betachrysovirus Fusarium graminearum virus-China 9 (FgV-ch9)9
Immunoinformatic approach for the construction of multi-epitopes vaccine against omicron COVID-19 variant9
Comparative analysis of the viral interferon regulatory factors of KSHV for their requisite for virus production and inhibition of the type I interferon pathway9
Virus-induced activation of the rac1 protein at the site of respiratory syncytial virus assembly is a requirement for virus particle assembly on infected cells9
Human Schlafen 11 exploits codon preference discrimination to attenuate viral protein synthesis of prototype foamy virus (PFV)9
Zika virus NS5 localizes at centrosomes during cell division9
Rolling circle amplification: A high fidelity and efficient alternative to plasmid preparation for the rescue of infectious clones9
SARS-CoV-2 and influenza co-infection: A cross-sectional study in central Missouri during the 2021–2022 influenza season9
Novel Gyrovirus genomes recovered from free-living pigeons in Southern Brazil9
Activation of DNA damage repair factors in HPV positive oropharyngeal cancers9
KSHV enhances mesenchymal stem cell homing and promotes KS-like pathogenesis9
Hsp90 is involved in pseudorabies virus virion assembly via stabilizing major capsid protein VP58
HPV-inactive cell populations arise from HPV16-transformed human keratinocytes after p53 knockout8
Bat mammalian orthoreoviruses cause severe pneumonia in mice8
A two-dose optimum for recombinant S1 protein-based COVID-19 vaccination8
Bacteriophage P1 does not show spatial preference when infecting Escherichia coli8
Fitness advantage of inter-species TYLCV recombinants induced by beneficial intra-genomic interactions rather than by specific mutations8
Antigenicity and immunogenicity of HA2 and M2e influenza virus antigens conjugated to norovirus-like, VP1 capsid-based particles by the SpyTag/SpyCatcher technology8
Components of a HIV-1 vaccine mediate virus-like particle (VLP)-formation and display of envelope proteins exposing broadly neutralizing epitopes8
Characterization of pseudotyped vesicular stomatitis virus bearing the heartland virus envelope glycoprotein8
CSFV protein NS5A activates the unfolded protein response to promote viral replication8
An RNA-dependent RNA polymerase inhibitor for tick-borne encephalitis virus8
Genomic characterisation of a novel avipoxvirus, magpiepox virus 2, from an Australian magpie (Gymnorhina tibicen terraereginae)8
Chimeric Zika viruses containing structural protein genes of insect-specific flaviviruses cannot replicate in vertebrate cells due to entry and post-translational restrictions8
Magnitude and diversity of immune response to vaccinia virus is dependent on route of administration8
Identification of A functional region in Bombyx mori nucleopolyhedrovirus VP39 that is essential for nuclear actin polymerization8
Global profiling of the alternative splicing landscape reveals transcriptomic diversity during the early phase of enterovirus 71 infection8
Molecular characterization of H3 subtype avian influenza viruses based on poultry-related environmental surveillance in China between 2014 and 20178
Repurposing of renin inhibitors as SARS-COV-2 main protease inhibitors: A computational study8
Adaptive genetic diversification of Lassa virus associated with the epidemic split of north-central Nigerian and non-Nigerian lineages8
Virome characterization in serum of healthy show pigs raised in Oklahoma demonstrated great diversity of ssDNA viruses7
Faecal virome of the Australian grey-headed flying fox from urban/suburban environments contains novel coronaviruses, retroviruses and sapoviruses7
Dynamics of SARS-CoV-2 variants of concern (VOC) in Bangladesh during the first half of 20217
Adipocyte Plasma Membrane Protein (APMAP) promotes JC Virus (JCPyV) infection in human glial cells7
Human neurotropic polyomavirus, JC virus, agnoprotein targets mitochondrion and modulates its functions7
The porcine deltacoronavirus accessory protein NS6 is expressed in vivo and incorporated into virions7
Complete genome reconstruction and genetic analysis of Taura syndrome virus of shrimp from archival Davidson's-fixed paraffin embedded tissue7
Identification of human adenovirus replication inhibitors from a library of small molecules targeting cellular epigenetic regulators7
Mucosal immune responses induced by oral administration of recombinant Lactococcus lactis expressing the S1 protein of PDCoV7
Pathogenesis and host responses in lungs and kidneys following Canadian 4/91 infectious bronchitis virus (IBV) infection in chickens7
Whitefly HES1 binds to the intergenic region of Tomato yellow leaf curl China virus and promotes viral gene transcription7
Specific antiviral effect of violaceoid E on bovine leukemia virus7
Multi-target direct-acting SARS-CoV-2 antivirals against the nucleotide-binding pockets of virus-specific proteins7
Characterization of a cancer-associated Epstein-Barr virus EBNA1 variant reveals a novel interaction with PLOD1 and PLOD37
Evaluation of the respiratory syncytial virus G-directed neutralizing antibody response in the human airway epithelial cell model7
Comparison of the antiviral activity of the microbicide candidate griffithsin and its tandemers derivatives against different modes of HIV-1 transmission7
Phenotypic characterization of gamma delta (γδ) T cells in chickens infected with or vaccinated against Marek's disease virus7
High prevalence of subclinical frog virus 3 infection in freshwater turtles of Ontario, Canada7
Unrecognized diversity of mammalian orthoreoviruses in North American bats7
Discovery of novel fish papillomaviruses: From the Antarctic to the commercial fish market7
Kaposi's sarcoma-associated herpesvirus ORF17 plays a key role in capsid maturation7
Expression of SARS coronavirus 1 spike protein from a herpesviral vector induces innate immune signaling and neutralizing antibody responses7
A full-length infectious cDNA clone of a dsRNA totivirus-like virus7
Comparative analysis of the course of infection and the immune response in rainbow trout (Oncorhynchus mykiss) infected with the 5 genotypes of infectious hematopoietic necrosis virus7
Misclassifications in human papillomavirus databases7
Guinea pig cytomegalovirus trimer complex gH/gL/gO uses PDGFRA as universal receptor for cell fusion and entry7
β-HPV 8E6 combined with TERT expression promotes long-term proliferation and genome instability after cytokinesis failure6
The VSV matrix protein inhibits NF-κB and the interferon response independently in mouse L929 cells6
Development of a thermostable SARS-CoV-2 variant-based bivalent protein vaccine with cross-neutralizing potency against Omicron subvariants6
American alligators are capable of West Nile virus amplification, mosquito infection and transmission6
Quantitative phylogenomic evidence reveals a spatially structured SARS-CoV-2 diversity6
Virological, pathological, and glycovirological investigations of an Ezo red fox and a tanuki naturally infected with H5N1 high pathogenicity avian influenza viruses in Hokkaido, Japan6
The interactions of flaviviruses with cellular receptors: Implications for virus entry6
PD-L1 upregulation by lytic induction of Epstein-Barr Virus6
Lipid metabolism is involved in the association of rotavirus viroplasms with endoplasmic reticulum membranes6
DNA repair gene expression is increased in HPV positive head and neck squamous cell carcinomas6
Dynamic changes impact the plum pox virus population structure during leaf and bud development6
Targeting of cucumber necrosis virus coat protein to the chloroplast stroma attenuates host defense response6
Nuclear transporter karyopherin subunit alpha 3 levels modulate Porcine circovirus type 2 replication in PK-15 cells6
Rat and human cytomegalovirus ORF116 encodes a virion envelope glycoprotein required for infectivity6
Sulfated glycans containing NeuAcα2-3Gal facilitate the propagation of human H1N1 influenza A viruses in eggs6
Clinical virology and effect of Covid-19 vaccination and monoclonal antibodies against highly infectious SARS- CoV-2 omicron sub variant BF.7 (BA.5.2.1.7): A systematic review6
Efficient establishment of reactivatable latency by an acyclovir-resistant herpes simplex virus 1 thymidine kinase substitution mutant with reduced neuronal replication6
Prediction of two novel overlapping ORFs in the genome of SARS-CoV-26
An essential N-terminal serine-rich motif in the AAV VP1 and VP2 subunits that may play a role in viral transcription6
Identification of brevinin-1EMa-derived stapled peptides as broad-spectrum virus entry blockers6
Enhanced effect of modified Zika virus E antigen on the immunogenicity of DNA vaccine6
BCG vaccination and the risk of COVID 19: A possible correlation6
Analysis of the reiteration regions (R1 to R5) of varicella-zoster virus6
Cauliflower mosaic virus P6 inclusion body formation: A dynamic and intricate process6
Whole-genome sequencing of Kaposi sarcoma-associated herpesvirus (KSHV/HHV8) reveals evidence for two African lineages6
The raspberry bushy dwarf virus 1b gene enables pollen grains to function efficiently in horizontal pollen transmission6
Inhibitors of the interferon response increase the replication of gorilla simian foamy viruses6
A novel human monoclonal antibody potently neutralizes human adenovirus serotype 7 by primarily targeting the adenovirus hexon protein6
NS1 protein as a novel anti-influenza target: Map-and-mutate antiviral rationale reveals new putative druggable hot spots with an important role on viral replication6
Estimating the age of the subfamily Orthocoronavirinae using host divergence times as calibration ages at two internal nodes6
Coinfection of porcine deltacoronavirus and porcine epidemic diarrhea virus altered viral tropism in gastrointestinal tract in a piglet model6
Identification of CD163 regions that are required for porcine reproductive and respiratory syndrome virus (PRRSV) infection but not for binding to viral envelope glycoproteins6
Immunization with a recombinant fusion of porcine reproductive and respiratory syndrome virus modified GP5 and ferritin elicits enhanced protective immunity in pigs6
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