Virology

Papers
(The TQCC of Virology is 7. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-07-01 to 2024-07-01.)
ArticleCitations
Growth, detection, quantification, and inactivation of SARS-CoV-2213
The novel coronavirus Disease-2019 (COVID-19): Mechanism of action, detection and recent therapeutic strategies183
The FDA-approved gold drug auranofin inhibits novel coronavirus (SARS-COV-2) replication and attenuates inflammation in human cells115
SARS-CoV-2 viroporin encoded by ORF3a triggers the NLRP3 inflammatory pathway82
Potential APOBEC-mediated RNA editing of the genomes of SARS-CoV-2 and other coronaviruses and its impact on their longer term evolution78
Contribution of single mutations to selected SARS-CoV-2 emerging variants spike antigenicity71
Association of viral load with serum biomakers among COVID-19 cases64
Antiviral activity of lycorine against Zika virus in vivo and in vitro58
Recovery of severely ill COVID-19 patients by intravenous immunoglobulin (IVIG) treatment: A case series51
Programmed −1 Ribosomal Frameshifting in coronaviruses: A therapeutic target51
Insilico study on the effect of SARS-CoV-2 RBD hotspot mutants’ interaction with ACE2 to understand the binding affinity and stability43
Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution41
H5N1 highly pathogenic avian influenza clade 2.3.4.4b in wild and domestic birds: Introductions into the United States and reassortments, December 2021–April 202241
Glial cell response to Epstein-Barr Virus infection: A plausible contribution to virus-associated inflammatory reactions in the brain38
On the road to ending the COVID-19 pandemic: Are we there yet?36
A natural food preservative peptide nisin can interact with the SARS-CoV-2 spike protein receptor human ACE235
Quantifying the effect of remdesivir in rhesus macaques infected with SARS-CoV-234
Viral polymerase binding and broad-spectrum antiviral activity of molnupiravir against human seasonal coronaviruses34
The pharmacology of plant virus nanoparticles31
Neutralizing antibody-dependent and -independent immune responses against SARS-CoV-2 in cynomolgus macaques31
A reverse-transcription recombinase-aided amplification assay for the rapid detection of N gene of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)30
Dexamethasone inhibits SARS-CoV-2 spike pseudotyped virus viropexis by binding to ACE229
The development and kinetics of functional antibody-dependent cell-mediated cytotoxicity (ADCC) to SARS-CoV-2 spike protein29
Incomplete humoral response including neutralizing antibodies in asymptomatic to mild COVID-19 patients in Japan29
Insect-Specific Viruses: An overview and their relationship to arboviruses of concern to humans and animals29
CRISPR-Cas12a combined with reverse transcription recombinase polymerase amplification for sensitive and specific detection of human norovirus genotype GII.428
New insights into the evolutionary features of viral overlapping genes by discriminant analysis28
Development of a SARS-CoV-2 nucleocapsid specific monoclonal antibody28
Virome characterization of Cryphonectria parasitica isolates from Azerbaijan unveiled a new mymonavirus and a putative new RNA virus unrelated to described viral sequences28
Analytical and clinical comparison of Viasure (CerTest Biotec) and 2019-nCoV CDC (IDT) RT-qPCR kits for SARS-CoV2 diagnosis.28
Flavonols and dihydroflavonols inhibit the main protease activity of SARS-CoV-2 and the replication of human coronavirus 229E28
Zika virus NS4A cytosolic region (residues 1–48) is an intrinsically disordered domain and folds upon binding to lipids26
Evaluation of novobiocin and telmisartan for anti-CHIKV activity24
Study on SARS-CoV-2 strains in Iran reveals potential contribution of co-infection with and recombination between different strains to the emergence of new strains23
Physicochemical effect of the N501Y, E484K/Q, K417N/T, L452R and T478K mutations on the SARS-CoV-2 spike protein RBD and its influence on agent fitness and on attributes developed by emerging variants23
CRISPR/Cas9-based inactivation of human papillomavirus oncogenes E6 or E7 induces senescence in cervical cancer cells23
Detecting SARS-CoV-2 3CLpro expression and activity using a polyclonal antiserum and a luciferase-based biosensor23
RNA virome abundance and diversity is associated with host age in a bird species22
Molecular and serological characterization of SARS-CoV-2 infection among COVID-19 patients22
Expression, purification and immunological characterization of recombinant nucleocapsid protein fragment from SARS-CoV-222
Construction and biological characterization of an infectious full-length cDNA clone of a Chinese isolate of Wheat yellow mosaic virus22
N6-methyladenosine regulates PEDV replication and host gene expression22
Strain wars 2: Binding constants, enthalpies, entropies, Gibbs energies and rates of binding of SARS-CoV-2 variants22
Analysis of a crucial interaction between the coronavirus nucleocapsid protein and the major membrane-bound subunit of the viral replicase-transcriptase complex21
Highly pathogenic avian influenza virus H5N6 (clade 2.3.4.4b) has a preferable host tropism for waterfowl reflected in its inefficient transmission to terrestrial poultry21
Characterization of neutralizing versus binding antibodies and memory B cells in COVID-19 recovered individuals from India21
Influenza C and D viral load in cattle correlates with bovine respiratory disease (BRD): Emerging role of orthomyxoviruses in the pathogenesis of BRD20
Coronavirus infection induces progressive restructuring of the endoplasmic reticulum involving the formation and degradation of double membrane vesicles20
Strain wars 4 - Darwinian evolution through Gibbs’ glasses: Gibbs energies of binding and growth explain evolution of SARS-CoV-2 from Hu-1 to BA.220
Mycoviral diversity and characteristics of a negative-stranded RNA virus LeNSRV1 in the edible mushroom Lentinula edodes20
RNAseq analysis identifies involvement of EBNA2 in PD-L1 induction during Epstein-Barr virus infection of primary B cells20
A high-resolution map of bacteriophage ϕX174 transcription19
Krebs von den Lungen-6 (KL-6) as a clinical marker for severe COVID-19: A systematic review and meta-analyses19
A plate of viruses: Viral metagenomics of supermarket chicken, pork and beef from Brazil19
Novel and diverse mycoviruses co-inhabiting the hypogeous ectomycorrhizal fungus Picoa juniperi19
SARS-CoV-2 and influenza co-infection: A cross-sectional study in central Missouri during the 2021–2022 influenza season19
Network analysis and molecular mapping for SARS-CoV-2 to reveal drug targets and repurposing of clinically developed drugs19
Epstein-Barr virus-encoded miR-BART11 promotes tumor-associated macrophage-induced epithelial-mesenchymal transition via targeting FOXP1 in gastric cancer18
The G614 pandemic SARS-CoV-2 variant is not more pathogenic than the original D614 form in adult Syrian hamsters18
Characterization of a novel genomovirus in the phytopathogenic fungus Botrytis cinerea18
Insights into SARS-CoV-2 evolution, potential antivirals, and vaccines17
Pharmacologic profiling reveals lapatinib as a novel antiviral against SARS-CoV-2 in vitro17
Alfalfa leaf curl virus is transmitted by Aphis craccivora in a highly specific circulative manner17
Discovery of novel fish papillomaviruses: From the Antarctic to the commercial fish market17
OvirusTdb: A database of oncolytic viruses for the advancement of therapeutics in cancer17
Frequency of HLA alleles among COVID-19 infected patients: Preliminary data from Saudi Arabia17
Azadirachta indica A. Juss bark extract and its Nimbin isomers restrict β-coronaviral infection and replication16
Cryphonectria nitschkei chrysovirus 1 with unique molecular features and a very narrow host range16
Effect of SARS-CoV-2 coinfection was not apparent on the dynamics of chronic hepatitis B infection16
Molecular characterisation of a novel pathogenic avipoxvirus from an Australian passerine bird, mudlark (Grallina cyanoleuca)16
Characterization of contemporary 2010.1 H3N2 swine influenza A viruses circulating in United States pigs15
Complex evolutionary history of felid anelloviruses15
Pathogenesis of a novel porcine parainfluenza virus type 1 isolate in conventional and colostrum deprived/caesarean derived pigs15
Structural heterogeneity of a human norovirus vaccine candidate15
Gut microbiota is associated with protection against Marek's disease virus infection in chickens15
Exploring the efficacy of naturally occurring biflavone based antioxidants towards the inhibition of the SARS-CoV-2 spike glycoprotein mediated membrane fusion15
Genomic evolution of the Coronaviridae family15
The phylogeographic history of tomato mosaic virus in Eurasia15
Diverse single-stranded DNA viruses identified in New Zealand (Aotearoa) South Island robin (Petroica australis) fecal samples14
De novo modelling of HEV replication polyprotein: Five-domain breakdown and involvement of flexibility in functional regulation14
Isolation of a novel insect-specific flavivirus with immunomodulatory effects in vertebrate systems14
The viral suppressor HCPro decreases DNA methylation and activates auxin biosynthesis genes14
Acute porcine epidemic diarrhea virus infection reshapes the intestinal microbiota14
Gist of Zika Virus pathogenesis14
Pathogenesis and infection dynamics of high pathogenicity avian influenza virus (HPAIV) H5N6 (clade 2.3.4.4b) in pheasants and onward transmission to chickens14
A two-dose optimum for recombinant S1 protein-based COVID-19 vaccination13
Azelastine inhibits viropexis of SARS-CoV-2 spike pseudovirus by binding to SARS-CoV-2 entry receptor ACE213
Analysis of SARS-CoV-2 synonymous codon usage evolution throughout the COVID-19 pandemic13
No evidence of HEV genotype 1 infections harming the male reproductive system13
Specificity and effector functions of non-neutralizing gB-specific monoclonal antibodies isolated from healthy individuals with human cytomegalovirus infection13
Microsecond simulations and CD spectroscopy reveals the intrinsically disordered nature of SARS-CoV-2 spike-C-terminal cytoplasmic tail (residues 1242–1273) in isolation13
Identification and evaluation of antiviral potential of thymoquinone, a natural compound targeting Chikungunya virus capsid protein13
Plant SNAREs SYP22 and SYP23 interact with Tobacco mosaic virus 126 kDa protein and SYP2s are required for normal local virus accumulation and spread13
Spondweni virus causes fetal harm in Ifnar1 mice and is transmitted by Aedes aegypti mosquitoes12
Understanding the mechanism of action of cytomegalovirus-induced regulatory T cells12
Immunoinformatic approach for the construction of multi-epitopes vaccine against omicron COVID-19 variant12
Epithelial-mesenchymal transition of absorptive enterocytes and depletion of Peyer's patch M cells after PEDV infection12
Labyrinthopeptin A1 inhibits dengue and Zika virus infection by interfering with the viral phospholipid membrane12
Zika virus infects Aedes aegypti ovaries12
‘PmLyO-Sf9 - WSSV complex’ could be a platform for elucidating the mechanism of viral entry, cellular apoptosis and replication impediments12
SARS-CoV-2 and other coronaviruses bind to phosphorylated glycans from the human lung12
Lipopolysaccharide restricts murine norovirus infection in macrophages mainly through NF-kB and JAK-STAT signaling pathway12
Characteristics of the major structural proteins of African swine fever virus: Role as antigens in the induction of neutralizing antibodies. A review12
Functional identification of a novel C7 protein of tomato yellow leaf curl virus12
Revisiting the amalgaviral landscapes in plant transcriptomes expands the host range of plant amalgaviruses12
Diverse cressdnaviruses and an anellovirus identified in the fecal samples of yellow-bellied marmots12
Sheep in wolves’ clothing: Temperate T7-like bacteriophages and the origins of the Autographiviridae12
Activation of DNA damage repair factors in HPV positive oropharyngeal cancers12
Capsid-specific nanobody effects on HIV-1 assembly and infectivity11
Viral metagenomics in Brazilian Pekin ducks identifies two gyrovirus, including a new species, and the potentially pathogenic duck circovirus11
Aspartic acid at residue 185 modulates the capacity of HP-PRRSV nsp4 to antagonize IFN-I expression11
Anterograde transport of α-herpesviruses in neuronal axons11
Novel Paju Apodemus paramyxovirus 1 and 2, harbored by Apodemus agrarius in the Republic of Korea11
Components of a HIV-1 vaccine mediate virus-like particle (VLP)-formation and display of envelope proteins exposing broadly neutralizing epitopes11
Zika virus capsid anchor forms cytotoxic amyloid-like fibrils11
Genetic signatures for lineage/sublineage classification of HPV16, 18, 52 and 58 variants11
Inhibition of porcine epidemic diarrhea virus (PEDV) replication by A77 1726 through targeting JAK and Src tyrosine kinases11
Effects of tumor necrosis factor on viral replication and pulmonary inflammation during acute mouse adenovirus type 1 respiratory infection11
Clinical virology and effect of Covid-19 vaccination and monoclonal antibodies against highly infectious SARS- CoV-2 omicron sub variant BF.7 (BA.5.2.1.7): A systematic review11
Evaluation of the respiratory syncytial virus G-directed neutralizing antibody response in the human airway epithelial cell model11
Development and characterization of infectious clones of two strains of Usutu virus11
Misclassifications in human papillomavirus databases11
Identification of potential COVID-19 treatment compounds which inhibit SARS Cov2 prototypic, Delta and Omicron variant infection11
Hsp90 is involved in pseudorabies virus virion assembly via stabilizing major capsid protein VP511
Virological, pathological, and glycovirological investigations of an Ezo red fox and a tanuki naturally infected with H5N1 high pathogenicity avian influenza viruses in Hokkaido, Japan11
Immunization with a recombinant fusion of porcine reproductive and respiratory syndrome virus modified GP5 and ferritin elicits enhanced protective immunity in pigs11
Virome characterization in serum of healthy show pigs raised in Oklahoma demonstrated great diversity of ssDNA viruses10
Cloacal virome of an ancient host lineage – The tuatara (Sphenodon punctatus) – Reveals abundant and diverse diet-related viruses10
Upregulation of FOXP3 is associated with severity of hypoxia and poor outcomes in COVID-19 patients10
Characterization of pseudotyped vesicular stomatitis virus bearing the heartland virus envelope glycoprotein10
Transmission parameters of pepper whitefly-borne vein yellows virus (PeWBVYV) by Bemisia tabaci and identification of an insect protein with a putative role in polerovirus transmission10
xCT/SLC7A11 antiporter function inhibits HIV-1 infection10
Processing of the capsid proteins of the Betachrysovirus Fusarium graminearum virus-China 9 (FgV-ch9)10
Metabolic shifts modulate lung injury caused by infection with H1N1 influenza A virus10
Bat mammalian orthoreoviruses cause severe pneumonia in mice10
Human Schlafen 11 exploits codon preference discrimination to attenuate viral protein synthesis of prototype foamy virus (PFV)10
Faecal virome of the Australian grey-headed flying fox from urban/suburban environments contains novel coronaviruses, retroviruses and sapoviruses10
Antigenicity and immunogenicity of HA2 and M2e influenza virus antigens conjugated to norovirus-like, VP1 capsid-based particles by the SpyTag/SpyCatcher technology10
Pathogenicity, infective dose and altered gut microbiota in piglets infected with porcine deltacoronavirus10
Cross protection by inactivated recombinant influenza viruses containing chimeric hemagglutinin conjugates with a conserved neuraminidase or M2 ectodomain epitope10
KSHV enhances mesenchymal stem cell homing and promotes KS-like pathogenesis10
Lipid metabolism is involved in the association of rotavirus viroplasms with endoplasmic reticulum membranes9
Mucosal immune responses induced by oral administration of recombinant Lactococcus lactis expressing the S1 protein of PDCoV9
A novel lineage of polyomaviruses identified in bark scorpions9
Estimating the age of the subfamily Orthocoronavirinae using host divergence times as calibration ages at two internal nodes9
Novel Gyrovirus genomes recovered from free-living pigeons in Southern Brazil9
The interplay of viral loads, clinical presentation, and serological responses in SARS-CoV-2 – Results from a prospective cohort of outpatient COVID-19 cases9
Rolling circle amplification: A high fidelity and efficient alternative to plasmid preparation for the rescue of infectious clones9
An essential N-terminal serine-rich motif in the AAV VP1 and VP2 subunits that may play a role in viral transcription9
An RNA-dependent RNA polymerase inhibitor for tick-borne encephalitis virus9
Phenotypic characterization of gamma delta (γδ) T cells in chickens infected with or vaccinated against Marek's disease virus9
Development of a blocker of the universal phosphatidylserine- and phosphatidylethanolamine-dependent viral entry pathways9
Evolution of resistance to fluoroquinolones by dengue virus serotype 4 provides insight into mechanism of action and consequences for viral fitness9
Dynamics of SARS-CoV-2 variants of concern (VOC) in Bangladesh during the first half of 20218
Kappa-RBD produced by glycoengineered Pichia pastoris elicited high neutralizing antibody titers against pseudoviruses of SARS-CoV-2 variants8
HPV-inactive cell populations arise from HPV16-transformed human keratinocytes after p53 knockout8
PD-L1 upregulation by lytic induction of Epstein-Barr Virus8
Adenovirus transduction to express human ACE2 causes obesity-specific morbidity in mice, impeding studies on the effect of host nutritional status on SARS-CoV-2 pathogenesis8
Pathogenesis and host responses in lungs and kidneys following Canadian 4/91 infectious bronchitis virus (IBV) infection in chickens8
The VSV matrix protein inhibits NF-κB and the interferon response independently in mouse L929 cells8
Specific antiviral effect of violaceoid E on bovine leukemia virus8
In-Silico targeting of SARS-CoV-2 NSP6 for drug and natural products repurposing8
Identification of human adenovirus replication inhibitors from a library of small molecules targeting cellular epigenetic regulators8
Porcine deltacoronavirus nsp10 antagonizes interferon-β production independently of its zinc finger domains8
Efficient establishment of reactivatable latency by an acyclovir-resistant herpes simplex virus 1 thymidine kinase substitution mutant with reduced neuronal replication8
Comparative analysis of the course of infection and the immune response in rainbow trout (Oncorhynchus mykiss) infected with the 5 genotypes of infectious hematopoietic necrosis virus8
Microbiota-independent antiviral effects of antibiotics on poliovirus and coxsackievirus8
Plaque Size Tool: An automated plaque analysis tool for simplifying and standardising bacteriophage plaque morphology measurements8
Repurposing of renin inhibitors as SARS-COV-2 main protease inhibitors: A computational study8
Analysis of the reiteration regions (R1 to R5) of varicella-zoster virus8
Chimeric Zika viruses containing structural protein genes of insect-specific flaviviruses cannot replicate in vertebrate cells due to entry and post-translational restrictions8
Virus-induced activation of the rac1 protein at the site of respiratory syncytial virus assembly is a requirement for virus particle assembly on infected cells8
Whole-genome sequencing of Kaposi sarcoma-associated herpesvirus (KSHV/HHV8) reveals evidence for two African lineages8
Characterization of a cancer-associated Epstein-Barr virus EBNA1 variant reveals a novel interaction with PLOD1 and PLOD38
Full genotype constellations analysis of unusual DS-1-like G12P[6] and G6P[8] rotavirus strains detected in Brazil, 20198
A full-length infectious cDNA clone of a dsRNA totivirus-like virus8
Dynamic changes impact the plum pox virus population structure during leaf and bud development8
Identification of A functional region in Bombyx mori nucleopolyhedrovirus VP39 that is essential for nuclear actin polymerization8
Genomic characterisation of a novel avipoxvirus, magpiepox virus 2, from an Australian magpie (Gymnorhina tibicen terraereginae)8
Excavating new facts from ancient Hepatitis B virus sequences8
Virus-like nanoparticles as enzyme carriers for Enzyme Replacement Therapy (ERT)8
Global profiling of the alternative splicing landscape reveals transcriptomic diversity during the early phase of enterovirus 71 infection8
Phylogenetic and pathogenic characterization of lumpy skin disease virus circulating in China7
Coinfection of porcine deltacoronavirus and porcine epidemic diarrhea virus altered viral tropism in gastrointestinal tract in a piglet model7
A robust high-throughput fluorescence polarization assay for rapid screening of SARS-CoV-2 papain-like protease inhibitors7
Immune escape mutations selected by neutralizing antibodies in natural HIV-1 infection can alter coreceptor usage repertoire of the transmitted/founder virus7
Guinea pig cytomegalovirus trimer complex gH/gL/gO uses PDGFRA as universal receptor for cell fusion and entry7
Unrecognized diversity of mammalian orthoreoviruses in North American bats7
Sulfated glycans containing NeuAcα2-3Gal facilitate the propagation of human H1N1 influenza A viruses in eggs7
Japanese Encephalitis Virus infection increases USP42 to stabilize TRIM21 and OAS1 for neuroinflammatory and anti-viral response in human microglia7
Expression of SARS coronavirus 1 spike protein from a herpesviral vector induces innate immune signaling and neutralizing antibody responses7
Multi-target direct-acting SARS-CoV-2 antivirals against the nucleotide-binding pockets of virus-specific proteins7
The porcine deltacoronavirus accessory protein NS6 is expressed in vivo and incorporated into virions7
Impacts of single nucleotide deletions from the 3′ end of Senecavirus A 5′ untranslated region on activity of viral IRES and on rescue of recombinant virus7
XerD-dependent integration of a novel filamentous phage Cf2 into the Xanthomonas citri genome7
Identification of CD163 regions that are required for porcine reproductive and respiratory syndrome virus (PRRSV) infection but not for binding to viral envelope glycoproteins7
Nuclear transporter karyopherin subunit alpha 3 levels modulate Porcine circovirus type 2 replication in PK-15 cells7
Matrix metalloproteinases and tissue inhibitors of metalloproteinases in murine β-coronavirus-induced neuroinflammation7
Replicase 1a gene plays a critical role in pathogenesis of avian coronavirus infectious bronchitis virus7
Exposure of white-tailed deer in North America to influenza D virus7
Human neurotropic polyomavirus, JC virus, agnoprotein targets mitochondrion and modulates its functions7
Influenza A virus NS1 induces degradation of sphingosine 1-phosphate lyase to obstruct the host innate immune response7
Human group A rotavirus P[25] VP8* specifically binds to A-type histo-blood group antigen7
Complete sequence and genetic characterization of a novel insect-specific reovirus discovered from Laodelphax striatellus7
Complete genome reconstruction and genetic analysis of Taura syndrome virus of shrimp from archival Davidson's-fixed paraffin embedded tissue7
DNA repair gene expression is increased in HPV positive head and neck squamous cell carcinomas7
Development of a thermostable SARS-CoV-2 variant-based bivalent protein vaccine with cross-neutralizing potency against Omicron subvariants7
Host gene expression modulated by Zika virus infection of human-293 cells7
Kaposi's sarcoma-associated herpesvirus ORF17 plays a key role in capsid maturation7
Adipocyte Plasma Membrane Protein (APMAP) promotes JC Virus (JCPyV) infection in human glial cells7
NS1 protein as a novel anti-influenza target: Map-and-mutate antiviral rationale reveals new putative druggable hot spots with an important role on viral replication7
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