Virology

Article	Citations
Growth, detection, quantification, and inactivation of SARS-CoV-2	213
The novel coronavirus Disease-2019 (COVID-19): Mechanism of action, detection and recent therapeutic strategies	183
The FDA-approved gold drug auranofin inhibits novel coronavirus (SARS-COV-2) replication and attenuates inflammation in human cells	115
SARS-CoV-2 viroporin encoded by ORF3a triggers the NLRP3 inflammatory pathway	82
Potential APOBEC-mediated RNA editing of the genomes of SARS-CoV-2 and other coronaviruses and its impact on their longer term evolution	78
Contribution of single mutations to selected SARS-CoV-2 emerging variants spike antigenicity	71
Association of viral load with serum biomakers among COVID-19 cases	64
Antiviral activity of lycorine against Zika virus in vivo and in vitro	58
Recovery of severely ill COVID-19 patients by intravenous immunoglobulin (IVIG) treatment: A case series	51
Programmed −1 Ribosomal Frameshifting in coronaviruses: A therapeutic target	51
Insilico study on the effect of SARS-CoV-2 RBD hotspot mutants’ interaction with ACE2 to understand the binding affinity and stability	43
Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution	41
H5N1 highly pathogenic avian influenza clade 2.3.4.4b in wild and domestic birds: Introductions into the United States and reassortments, December 2021–April 2022	41
Glial cell response to Epstein-Barr Virus infection: A plausible contribution to virus-associated inflammatory reactions in the brain	38
On the road to ending the COVID-19 pandemic: Are we there yet?	36
A natural food preservative peptide nisin can interact with the SARS-CoV-2 spike protein receptor human ACE2	35
Quantifying the effect of remdesivir in rhesus macaques infected with SARS-CoV-2	34
Viral polymerase binding and broad-spectrum antiviral activity of molnupiravir against human seasonal coronaviruses	34
The pharmacology of plant virus nanoparticles	31
Neutralizing antibody-dependent and -independent immune responses against SARS-CoV-2 in cynomolgus macaques	31
A reverse-transcription recombinase-aided amplification assay for the rapid detection of N gene of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)	30
Dexamethasone inhibits SARS-CoV-2 spike pseudotyped virus viropexis by binding to ACE2	29
The development and kinetics of functional antibody-dependent cell-mediated cytotoxicity (ADCC) to SARS-CoV-2 spike protein	29
Incomplete humoral response including neutralizing antibodies in asymptomatic to mild COVID-19 patients in Japan	29
Insect-Specific Viruses: An overview and their relationship to arboviruses of concern to humans and animals	29

CRISPR-Cas12a combined with reverse transcription recombinase polymerase amplification for sensitive and specific detection of human norovirus genotype GII.4	28
New insights into the evolutionary features of viral overlapping genes by discriminant analysis	28
Development of a SARS-CoV-2 nucleocapsid specific monoclonal antibody	28
Virome characterization of Cryphonectria parasitica isolates from Azerbaijan unveiled a new mymonavirus and a putative new RNA virus unrelated to described viral sequences	28
Analytical and clinical comparison of Viasure (CerTest Biotec) and 2019-nCoV CDC (IDT) RT-qPCR kits for SARS-CoV2 diagnosis.	28
Flavonols and dihydroflavonols inhibit the main protease activity of SARS-CoV-2 and the replication of human coronavirus 229E	28
Zika virus NS4A cytosolic region (residues 1–48) is an intrinsically disordered domain and folds upon binding to lipids	26
Evaluation of novobiocin and telmisartan for anti-CHIKV activity	24
Study on SARS-CoV-2 strains in Iran reveals potential contribution of co-infection with and recombination between different strains to the emergence of new strains	23
Physicochemical effect of the N501Y, E484K/Q, K417N/T, L452R and T478K mutations on the SARS-CoV-2 spike protein RBD and its influence on agent fitness and on attributes developed by emerging variants	23
CRISPR/Cas9-based inactivation of human papillomavirus oncogenes E6 or E7 induces senescence in cervical cancer cells	23
Detecting SARS-CoV-2 3CLpro expression and activity using a polyclonal antiserum and a luciferase-based biosensor	23
RNA virome abundance and diversity is associated with host age in a bird species	22
Molecular and serological characterization of SARS-CoV-2 infection among COVID-19 patients	22
Expression, purification and immunological characterization of recombinant nucleocapsid protein fragment from SARS-CoV-2	22
Construction and biological characterization of an infectious full-length cDNA clone of a Chinese isolate of Wheat yellow mosaic virus	22
N6-methyladenosine regulates PEDV replication and host gene expression	22
Strain wars 2: Binding constants, enthalpies, entropies, Gibbs energies and rates of binding of SARS-CoV-2 variants	22
Analysis of a crucial interaction between the coronavirus nucleocapsid protein and the major membrane-bound subunit of the viral replicase-transcriptase complex	21
Highly pathogenic avian influenza virus H5N6 (clade 2.3.4.4b) has a preferable host tropism for waterfowl reflected in its inefficient transmission to terrestrial poultry	21
Characterization of neutralizing versus binding antibodies and memory B cells in COVID-19 recovered individuals from India	21
Influenza C and D viral load in cattle correlates with bovine respiratory disease (BRD): Emerging role of orthomyxoviruses in the pathogenesis of BRD	20
Coronavirus infection induces progressive restructuring of the endoplasmic reticulum involving the formation and degradation of double membrane vesicles	20
Strain wars 4 - Darwinian evolution through Gibbs’ glasses: Gibbs energies of binding and growth explain evolution of SARS-CoV-2 from Hu-1 to BA.2	20
Mycoviral diversity and characteristics of a negative-stranded RNA virus LeNSRV1 in the edible mushroom Lentinula edodes	20
RNAseq analysis identifies involvement of EBNA2 in PD-L1 induction during Epstein-Barr virus infection of primary B cells	20
A high-resolution map of bacteriophage ϕX174 transcription	19
Krebs von den Lungen-6 (KL-6) as a clinical marker for severe COVID-19: A systematic review and meta-analyses	19
A plate of viruses: Viral metagenomics of supermarket chicken, pork and beef from Brazil	19
Novel and diverse mycoviruses co-inhabiting the hypogeous ectomycorrhizal fungus Picoa juniperi	19
SARS-CoV-2 and influenza co-infection: A cross-sectional study in central Missouri during the 2021–2022 influenza season	19
Network analysis and molecular mapping for SARS-CoV-2 to reveal drug targets and repurposing of clinically developed drugs	19
Epstein-Barr virus-encoded miR-BART11 promotes tumor-associated macrophage-induced epithelial-mesenchymal transition via targeting FOXP1 in gastric cancer	18
The G614 pandemic SARS-CoV-2 variant is not more pathogenic than the original D614 form in adult Syrian hamsters	18
Characterization of a novel genomovirus in the phytopathogenic fungus Botrytis cinerea	18
Insights into SARS-CoV-2 evolution, potential antivirals, and vaccines	17
Pharmacologic profiling reveals lapatinib as a novel antiviral against SARS-CoV-2 in vitro	17
Alfalfa leaf curl virus is transmitted by Aphis craccivora in a highly specific circulative manner	17
Discovery of novel fish papillomaviruses: From the Antarctic to the commercial fish market	17
OvirusTdb: A database of oncolytic viruses for the advancement of therapeutics in cancer	17
Frequency of HLA alleles among COVID-19 infected patients: Preliminary data from Saudi Arabia	17
Azadirachta indica A. Juss bark extract and its Nimbin isomers restrict β-coronaviral infection and replication	16
Cryphonectria nitschkei chrysovirus 1 with unique molecular features and a very narrow host range	16
Effect of SARS-CoV-2 coinfection was not apparent on the dynamics of chronic hepatitis B infection	16
Molecular characterisation of a novel pathogenic avipoxvirus from an Australian passerine bird, mudlark (Grallina cyanoleuca)	16
Characterization of contemporary 2010.1 H3N2 swine influenza A viruses circulating in United States pigs	15
Complex evolutionary history of felid anelloviruses	15
Pathogenesis of a novel porcine parainfluenza virus type 1 isolate in conventional and colostrum deprived/caesarean derived pigs	15
Structural heterogeneity of a human norovirus vaccine candidate	15
Gut microbiota is associated with protection against Marek's disease virus infection in chickens	15

Exploring the efficacy of naturally occurring biflavone based antioxidants towards the inhibition of the SARS-CoV-2 spike glycoprotein mediated membrane fusion	15
Genomic evolution of the Coronaviridae family	15
The phylogeographic history of tomato mosaic virus in Eurasia	15
Diverse single-stranded DNA viruses identified in New Zealand (Aotearoa) South Island robin (Petroica australis) fecal samples	14
De novo modelling of HEV replication polyprotein: Five-domain breakdown and involvement of flexibility in functional regulation	14
Isolation of a novel insect-specific flavivirus with immunomodulatory effects in vertebrate systems	14
The viral suppressor HCPro decreases DNA methylation and activates auxin biosynthesis genes	14
Acute porcine epidemic diarrhea virus infection reshapes the intestinal microbiota	14
Gist of Zika Virus pathogenesis	14
Pathogenesis and infection dynamics of high pathogenicity avian influenza virus (HPAIV) H5N6 (clade 2.3.4.4b) in pheasants and onward transmission to chickens	14
No evidence of HEV genotype 1 infections harming the male reproductive system	13
Specificity and effector functions of non-neutralizing gB-specific monoclonal antibodies isolated from healthy individuals with human cytomegalovirus infection	13
A two-dose optimum for recombinant S1 protein-based COVID-19 vaccination	13
Identification and evaluation of antiviral potential of thymoquinone, a natural compound targeting Chikungunya virus capsid protein	13
Plant SNAREs SYP22 and SYP23 interact with Tobacco mosaic virus 126 kDa protein and SYP2s are required for normal local virus accumulation and spread	13
Analysis of SARS-CoV-2 synonymous codon usage evolution throughout the COVID-19 pandemic	13
Azelastine inhibits viropexis of SARS-CoV-2 spike pseudovirus by binding to SARS-CoV-2 entry receptor ACE2	13
Microsecond simulations and CD spectroscopy reveals the intrinsically disordered nature of SARS-CoV-2 spike-C-terminal cytoplasmic tail (residues 1242–1273) in isolation	13
Functional identification of a novel C7 protein of tomato yellow leaf curl virus	12
Revisiting the amalgaviral landscapes in plant transcriptomes expands the host range of plant amalgaviruses	12
Diverse cressdnaviruses and an anellovirus identified in the fecal samples of yellow-bellied marmots	12
Sheep in wolves’ clothing: Temperate T7-like bacteriophages and the origins of the Autographiviridae	12
Activation of DNA damage repair factors in HPV positive oropharyngeal cancers	12
Spondweni virus causes fetal harm in Ifnar1 mice and is transmitted by Aedes aegypti mosquitoes	12
Understanding the mechanism of action of cytomegalovirus-induced regulatory T cells	12
Immunoinformatic approach for the construction of multi-epitopes vaccine against omicron COVID-19 variant	12
Epithelial-mesenchymal transition of absorptive enterocytes and depletion of Peyer's patch M cells after PEDV infection	12
Labyrinthopeptin A1 inhibits dengue and Zika virus infection by interfering with the viral phospholipid membrane	12
Zika virus infects Aedes aegypti ovaries	12
‘PmLyO-Sf9 - WSSV complex’ could be a platform for elucidating the mechanism of viral entry, cellular apoptosis and replication impediments	12
SARS-CoV-2 and other coronaviruses bind to phosphorylated glycans from the human lung	12
Lipopolysaccharide restricts murine norovirus infection in macrophages mainly through NF-kB and JAK-STAT signaling pathway	12
Characteristics of the major structural proteins of African swine fever virus: Role as antigens in the induction of neutralizing antibodies. A review	12
Effects of tumor necrosis factor on viral replication and pulmonary inflammation during acute mouse adenovirus type 1 respiratory infection	11
Clinical virology and effect of Covid-19 vaccination and monoclonal antibodies against highly infectious SARS- CoV-2 omicron sub variant BF.7 (BA.5.2.1.7): A systematic review	11
Evaluation of the respiratory syncytial virus G-directed neutralizing antibody response in the human airway epithelial cell model	11
Development and characterization of infectious clones of two strains of Usutu virus	11
Misclassifications in human papillomavirus databases	11
Identification of potential COVID-19 treatment compounds which inhibit SARS Cov2 prototypic, Delta and Omicron variant infection	11
Hsp90 is involved in pseudorabies virus virion assembly via stabilizing major capsid protein VP5	11
Virological, pathological, and glycovirological investigations of an Ezo red fox and a tanuki naturally infected with H5N1 high pathogenicity avian influenza viruses in Hokkaido, Japan	11
Immunization with a recombinant fusion of porcine reproductive and respiratory syndrome virus modified GP5 and ferritin elicits enhanced protective immunity in pigs	11
Capsid-specific nanobody effects on HIV-1 assembly and infectivity	11
Viral metagenomics in Brazilian Pekin ducks identifies two gyrovirus, including a new species, and the potentially pathogenic duck circovirus	11
Aspartic acid at residue 185 modulates the capacity of HP-PRRSV nsp4 to antagonize IFN-I expression	11
Anterograde transport of α-herpesviruses in neuronal axons	11
Novel Paju Apodemus paramyxovirus 1 and 2, harbored by Apodemus agrarius in the Republic of Korea	11
Components of a HIV-1 vaccine mediate virus-like particle (VLP)-formation and display of envelope proteins exposing broadly neutralizing epitopes	11
Zika virus capsid anchor forms cytotoxic amyloid-like fibrils	11
Genetic signatures for lineage/sublineage classification of HPV16, 18, 52 and 58 variants	11
Inhibition of porcine epidemic diarrhea virus (PEDV) replication by A77 1726 through targeting JAK and Src tyrosine kinases	11
Faecal virome of the Australian grey-headed flying fox from urban/suburban environments contains novel coronaviruses, retroviruses and sapoviruses	10
Antigenicity and immunogenicity of HA2 and M2e influenza virus antigens conjugated to norovirus-like, VP1 capsid-based particles by the SpyTag/SpyCatcher technology	10
Pathogenicity, infective dose and altered gut microbiota in piglets infected with porcine deltacoronavirus	10
Cross protection by inactivated recombinant influenza viruses containing chimeric hemagglutinin conjugates with a conserved neuraminidase or M2 ectodomain epitope	10
KSHV enhances mesenchymal stem cell homing and promotes KS-like pathogenesis	10
Virome characterization in serum of healthy show pigs raised in Oklahoma demonstrated great diversity of ssDNA viruses	10
Cloacal virome of an ancient host lineage – The tuatara (Sphenodon punctatus) – Reveals abundant and diverse diet-related viruses	10
Upregulation of FOXP3 is associated with severity of hypoxia and poor outcomes in COVID-19 patients	10
Characterization of pseudotyped vesicular stomatitis virus bearing the heartland virus envelope glycoprotein	10
Transmission parameters of pepper whitefly-borne vein yellows virus (PeWBVYV) by Bemisia tabaci and identification of an insect protein with a putative role in polerovirus transmission	10
xCT/SLC7A11 antiporter function inhibits HIV-1 infection	10
Processing of the capsid proteins of the Betachrysovirus Fusarium graminearum virus-China 9 (FgV-ch9)	10
Metabolic shifts modulate lung injury caused by infection with H1N1 influenza A virus	10
Bat mammalian orthoreoviruses cause severe pneumonia in mice	10
Human Schlafen 11 exploits codon preference discrimination to attenuate viral protein synthesis of prototype foamy virus (PFV)	10
Rolling circle amplification: A high fidelity and efficient alternative to plasmid preparation for the rescue of infectious clones	9
An essential N-terminal serine-rich motif in the AAV VP1 and VP2 subunits that may play a role in viral transcription	9
An RNA-dependent RNA polymerase inhibitor for tick-borne encephalitis virus	9
Phenotypic characterization of gamma delta (γδ) T cells in chickens infected with or vaccinated against Marek's disease virus	9
Development of a blocker of the universal phosphatidylserine- and phosphatidylethanolamine-dependent viral entry pathways	9
Evolution of resistance to fluoroquinolones by dengue virus serotype 4 provides insight into mechanism of action and consequences for viral fitness	9
Lipid metabolism is involved in the association of rotavirus viroplasms with endoplasmic reticulum membranes	9
Mucosal immune responses induced by oral administration of recombinant Lactococcus lactis expressing the S1 protein of PDCoV	9
A novel lineage of polyomaviruses identified in bark scorpions	9
Estimating the age of the subfamily Orthocoronavirinae using host divergence times as calibration ages at two internal nodes	9
Novel Gyrovirus genomes recovered from free-living pigeons in Southern Brazil	9
The interplay of viral loads, clinical presentation, and serological responses in SARS-CoV-2 – Results from a prospective cohort of outpatient COVID-19 cases	9
Virus-induced activation of the rac1 protein at the site of respiratory syncytial virus assembly is a requirement for virus particle assembly on infected cells	8
Whole-genome sequencing of Kaposi sarcoma-associated herpesvirus (KSHV/HHV8) reveals evidence for two African lineages	8

Characterization of a cancer-associated Epstein-Barr virus EBNA1 variant reveals a novel interaction with PLOD1 and PLOD3	8
Full genotype constellations analysis of unusual DS-1-like G12P[6] and G6P[8] rotavirus strains detected in Brazil, 2019	8
A full-length infectious cDNA clone of a dsRNA totivirus-like virus	8
Dynamic changes impact the plum pox virus population structure during leaf and bud development	8
Identification of A functional region in Bombyx mori nucleopolyhedrovirus VP39 that is essential for nuclear actin polymerization	8
Genomic characterisation of a novel avipoxvirus, magpiepox virus 2, from an Australian magpie (Gymnorhina tibicen terraereginae)	8
Excavating new facts from ancient Hepatitis B virus sequences	8
Virus-like nanoparticles as enzyme carriers for Enzyme Replacement Therapy (ERT)	8
Global profiling of the alternative splicing landscape reveals transcriptomic diversity during the early phase of enterovirus 71 infection	8
Dynamics of SARS-CoV-2 variants of concern (VOC) in Bangladesh during the first half of 2021	8
Kappa-RBD produced by glycoengineered Pichia pastoris elicited high neutralizing antibody titers against pseudoviruses of SARS-CoV-2 variants	8
HPV-inactive cell populations arise from HPV16-transformed human keratinocytes after p53 knockout	8
PD-L1 upregulation by lytic induction of Epstein-Barr Virus	8
Adenovirus transduction to express human ACE2 causes obesity-specific morbidity in mice, impeding studies on the effect of host nutritional status on SARS-CoV-2 pathogenesis	8
Pathogenesis and host responses in lungs and kidneys following Canadian 4/91 infectious bronchitis virus (IBV) infection in chickens	8
The VSV matrix protein inhibits NF-κB and the interferon response independently in mouse L929 cells	8
Specific antiviral effect of violaceoid E on bovine leukemia virus	8
In-Silico targeting of SARS-CoV-2 NSP6 for drug and natural products repurposing	8
Identification of human adenovirus replication inhibitors from a library of small molecules targeting cellular epigenetic regulators	8
Porcine deltacoronavirus nsp10 antagonizes interferon-β production independently of its zinc finger domains	8
Efficient establishment of reactivatable latency by an acyclovir-resistant herpes simplex virus 1 thymidine kinase substitution mutant with reduced neuronal replication	8
Comparative analysis of the course of infection and the immune response in rainbow trout (Oncorhynchus mykiss) infected with the 5 genotypes of infectious hematopoietic necrosis virus	8
Microbiota-independent antiviral effects of antibiotics on poliovirus and coxsackievirus	8
Plaque Size Tool: An automated plaque analysis tool for simplifying and standardising bacteriophage plaque morphology measurements	8
Repurposing of renin inhibitors as SARS-COV-2 main protease inhibitors: A computational study	8
Analysis of the reiteration regions (R1 to R5) of varicella-zoster virus	8
Chimeric Zika viruses containing structural protein genes of insect-specific flaviviruses cannot replicate in vertebrate cells due to entry and post-translational restrictions	8
Replicase 1a gene plays a critical role in pathogenesis of avian coronavirus infectious bronchitis virus	7
Exposure of white-tailed deer in North America to influenza D virus	7
Human neurotropic polyomavirus, JC virus, agnoprotein targets mitochondrion and modulates its functions	7
Influenza A virus NS1 induces degradation of sphingosine 1-phosphate lyase to obstruct the host innate immune response	7
Human group A rotavirus P[25] VP8* specifically binds to A-type histo-blood group antigen	7
Complete sequence and genetic characterization of a novel insect-specific reovirus discovered from Laodelphax striatellus	7
Complete genome reconstruction and genetic analysis of Taura syndrome virus of shrimp from archival Davidson's-fixed paraffin embedded tissue	7
DNA repair gene expression is increased in HPV positive head and neck squamous cell carcinomas	7
Development of a thermostable SARS-CoV-2 variant-based bivalent protein vaccine with cross-neutralizing potency against Omicron subvariants	7
Host gene expression modulated by Zika virus infection of human-293 cells	7
Kaposi's sarcoma-associated herpesvirus ORF17 plays a key role in capsid maturation	7
Adipocyte Plasma Membrane Protein (APMAP) promotes JC Virus (JCPyV) infection in human glial cells	7
NS1 protein as a novel anti-influenza target: Map-and-mutate antiviral rationale reveals new putative druggable hot spots with an important role on viral replication	7
Phylogenetic and pathogenic characterization of lumpy skin disease virus circulating in China	7
Coinfection of porcine deltacoronavirus and porcine epidemic diarrhea virus altered viral tropism in gastrointestinal tract in a piglet model	7
A robust high-throughput fluorescence polarization assay for rapid screening of SARS-CoV-2 papain-like protease inhibitors	7
Immune escape mutations selected by neutralizing antibodies in natural HIV-1 infection can alter coreceptor usage repertoire of the transmitted/founder virus	7
Guinea pig cytomegalovirus trimer complex gH/gL/gO uses PDGFRA as universal receptor for cell fusion and entry	7
Unrecognized diversity of mammalian orthoreoviruses in North American bats	7
Sulfated glycans containing NeuAcα2-3Gal facilitate the propagation of human H1N1 influenza A viruses in eggs	7
Japanese Encephalitis Virus infection increases USP42 to stabilize TRIM21 and OAS1 for neuroinflammatory and anti-viral response in human microglia	7
Expression of SARS coronavirus 1 spike protein from a herpesviral vector induces innate immune signaling and neutralizing antibody responses	7
Multi-target direct-acting SARS-CoV-2 antivirals against the nucleotide-binding pockets of virus-specific proteins	7
The porcine deltacoronavirus accessory protein NS6 is expressed in vivo and incorporated into virions	7
Impacts of single nucleotide deletions from the 3′ end of Senecavirus A 5′ untranslated region on activity of viral IRES and on rescue of recombinant virus	7
XerD-dependent integration of a novel filamentous phage Cf2 into the Xanthomonas citri genome	7
Identification of CD163 regions that are required for porcine reproductive and respiratory syndrome virus (PRRSV) infection but not for binding to viral envelope glycoproteins	7
Nuclear transporter karyopherin subunit alpha 3 levels modulate Porcine circovirus type 2 replication in PK-15 cells	7
Matrix metalloproteinases and tissue inhibitors of metalloproteinases in murine β-coronavirus-induced neuroinflammation	7