Soil Biology & Biochemistry

Article	Citations
A microbial-explicit model with comprehensive nitrogen processes to quantify gaseous nitrogen production from agricultural soils	579
The soil microbial community and plant biomass differentially contribute to the retention and recycling of urinary-N in grasslands	260
Biogeography of soil protistan consumer and parasite is contrasting and linked to microbial nutrient mineralization in forest soils at a wide-scale	202
Scaling up taxon-specific microbial traits to predict community-level microbial activity in agricultural systems	195
Drying-rewetting of permanent pasture and agricultural soils induces a shift towards microbial use of more C-rich organic matter	195
Trophic interrelationships drive the biogeography of protistan community in agricultural ecosystems	178
Microbial “hotspots” of organic matter decomposition in temperate peatlands are driven by local spatial heterogeneity in abiotic conditions and not by vegetation structure	177
Wildland fire ash enhances short-term CO2 flux from soil in a Southern African savannah	163
Responses of root architecture and the rhizosphere microbiome assembly of maize (Zea mays L.) to a soil texture gradient	161
Protists modulate fungal community assembly in paddy soils across climatic zones at the continental scale	160
Carbon acquisition ecological strategies to connect soil microbial biodiversity and carbon cycling	154
Microbial transformation mechanisms of particulate organic carbon to mineral-associated organic carbon at the chemical molecular level: Highlighting the effects of ambient temperature and soil moistur	154
Limited effects of century-old biochar on taxonomic and functional diversities of collembolan communities across land-uses	151
Revisiting process-based simulations of soil nitrite dynamics: Tighter cycling between nitrite and nitrate than considered previously	145
Nitrate-induced hydroxyl radical releases deep soil organic carbon by opening the ‘enzyme latch’ under micro-aerobic conditions	141
Legacy effects of rhizodeposits on soil microbiomes: A perspective	138
Impact of common sample pre-treatments on key soil microbial properties	137
The influence of soil development on the depth distribution and structure of soil microbial communities	135
Altered rainfall greatly affects enzyme activity but has limited effect on microbial biomass in Australian dryland soils	132
Abundant and rare fungal taxa exhibit different patterns of phylogenetic niche conservatism and community assembly across a geographical and environmental gradient	131
Strong rhizosphere priming effects on N dynamics in soils with higher soil N supply capacity: The ‘Matthew effect’ in plant-soil systems	129
Editorial Board	123
Stability of iron-carbon complexes determines carbon sequestration efficiency in iron-rich soils	123
Tackling global biogeography and drivers of soil microbial dehalogenation traits and taxa: Insights from metagenomic profiling based on a curated dehalogenase database	119
Arbuscular mycorrhizal inoculation and plant response strongly shape bacterial and eukaryotic soil community trajectories	114

Shrub effects on the decomposition microenvironment and changes in litter quality have opposing effects on litter decomposition	112
Earthworm ecotype diversity mitigates resource limitations of microbial community in arable soils	105
Distinct mechanisms drive plant-nitrifier interactions in topsoil and subsoil	104
Root exudation processes induce the utilization of microbial-derived components by rhizoplane microbiota under conservation agriculture	103
Contrasting effects of biological soil crusts on soil respiration in a typical steppe	101
Response of soil microbial diversity and functionality to snow removal in a cool-temperate forest	100
Phosphorus addition ameliorates soil micro-food web simplification due to nitrogen enrichment but does not restore nematode community composition	99
Comparative analysis of diversity and environmental niches of soil bacterial, archaeal, fungal and protist communities reveal niche divergences along environmental gradients in the Alps	99
Multi-amplicon nitrogen cycling gene standard: An innovative approach for quantifying N-transforming soil microbes in terrestrial ecosystems	98
Soil metabolomics - current challenges and future perspectives	98
Nitrogen addition altered the plant-arbuscular mycorrhizal fungi network through reducing redundant interactions in an alpine meadow	97
Crop productivity, resource allocation and nitrogen concentration as affected by soil decomposers, mixed cropping and crop genotype	97
Biochar addition regulates soil and earthworm gut microbiome and multifunctionality	93
Cry for help from rhizosphere microbiomes and self-rescue strategies cooperatively alleviate drought stress in spring wheat	92
Soil oxidoreductase zymography: Visualizing spatial distributions of peroxidase and phenol oxidase activities at the root-soil interface	90
Time-dependent regulation of soil aggregates on fertilizer N retention and the influence of straw mulching	90
VNIR and MIR spectroscopy of PLFA-derived soil microbial properties and associated soil physicochemical characteristics in an experimental plant diversity gradient	89
Fungal decomposition and transformation of molecular and colloidal fractions of dissolved organic matter extracted from boreal forest soil	89
Expedited loss of soil biodiversity in blue carbon ecosystems caused by rising sea levels	86
Earthworms in an enhanced weathering mesocosm experiment: Effects on soil carbon sequestration, base cation exchange and soil CO2 efflux	85
Tree decline and mortality following pathogen invasion alters the diversity, composition and network structure of the soil microbiome	85
From rhizosphere to detritusphere – Soil structure formation driven by plant roots and the interactions with soil biota	85
Different responses of nitrous oxide emissions to liming and manure amendment of an acidic ultisol are controlled by autotrophic and heterotrophic nitrification	84
Long-term warming-induced trophic downgrading in the soil microbial food web	83
Drought-induced changes in rare microbial community promoted contribution of microbial necromass C to SOC in a subtropical forest	82
Nitrogen induced soil carbon gains are resistant to loss after the cessation of excess nitrogen inputs	82
Straw return and low N addition modify the partitioning of dissimilatory nitrate reduction by increasing conversion to ammonium in paddy fields	82
Metabolic pathways of CO2 fixing microorganisms determined C-fixation rates in grassland soils along the precipitation gradient	82
Conversion of SIC to SOC enhances soil carbon sequestration and soil structural stability in alpine ecosystems of the Qinghai-Tibet Plateau	81
Dual role of silt and clay in the formation and accrual of stabilized soil organic carbon	80
Corrigendum to “Spatial and temporal detection of root exudates with a paper-based microfluidic device” [Soil Biol. Biochem. 195 (2024), 109456]	79
Hydrophilic and hydrophobic fractions of extracellular fungal phosphatases interact differently with clay mineral surfaces	79
Enhanced mite grazing leads to pattern shifts in soil N2O emissions after organic fertilizer application	78
Selective utilization of organic carbon molecules promotes arsenic methylation by increasing methyltransferase activity in arsM-harboring microbes of paddy soils	77
Spatial and temporal detection of root exudates with a paper-based microfluidic device	77
Nitrogen availability and mineral particles contributed fungal necromass to the newly formed stable carbon pool in the alpine areas of Southwest China	77
Shedding light on the functional role of the Ignavibacteria in Italian rice field soil: A meta-genomic/transcriptomic analysis	76
Editorial Board	75
Contrasting responses of microbial diversity and community structure in decaying root bark and xylem to N addition in an alpine shrubland	74
Historical forest disturbance reduces soil microbial efficiency across multiple carbon sources	74
The effects of climate warming and exogenous nitrogen input on soil N2O emissions from mangroves	74
The interplay between Azospirillum brasilense and the native bacterial communities in the soil and rhizosphere of maize (Zea mays L.)	74
Rice root Fe plaque increases paddy soil CH4 emissions via the promotion of electron transfer for syntrophic methanogenesis	73
No thermal adaptation in soil extracellular enzymes across a temperate grassland region	73
Testing the environmental controls of microbial nitrogen-mining induced by semi-continuous labile carbon additions in the subarctic	72
Impact of graphite nano amendments on soil enzyme activities, functional genes and microbiome composition in a soil-plant system	71
Manure application effects on subsoils: Abundant taxa initiate the diversity reduction of rare bacteria and community functional alterations	71
Mineral type and land-use intensity control composition and functions of microorganisms colonizing pristine minerals in grassland soils	71
Rapid transfer of C and N excreted by decomposer soil animals to plants and above-ground herbivores	70
Thermodynamic control on the decomposition of organic matter across different electron acceptors	70

Microbial resistance in rhizosphere hotspots under biodegradable and conventional microplastic amendment: Community and functional sensitivity	70
Depth effects on bacterial community assembly processes in paddy soils	69
Arbuscular mycorrhizal fungi have a greater role than root hairs of maize for priming the rhizosphere microbial community and enhancing rhizosphere organic P mineralization	69
Pathways of biogenically excreted organic matter into soil aggregates	69
Soil textural control on moisture distribution at the microscale and its effect on added particulate organic matter mineralization	69
Resolving dynamic mineral-organic interactions in the rhizosphere by combining in-situ microsensors with plant-soil reactive transport modeling	69
Sporadic P limitation constrains microbial growth and facilitates SOM accumulation in the stoichiometrically coupled, acclimating microbe–plant–soil model	69
Long-term N-addition alters the community structure of functionally important N-cycling soil microorganisms across global grasslands	69
Addition of base cations increases microbial carbon use efficiency and biomass in acidic soils	68
Energy and matter dynamics in an estuarine soil are more sensitive to warming than salinization	67
Microbial necromass as the source of soil organic carbon in global ecosystems	67
Coupling energy balance and carbon flux during cellulose degradation in arable soils	66
Carbon flow from roots to rhizobacterial networks: Grafting effects	66
A global meta-analysis reveals the positive effect of invasive alien plants on soil heterotrophic respiration	65
Tillage and pesticide seed treatments have distinct effects on soil microbial diversity and function	64
Soil carbon mineralization and microbial community dynamics in response to pyrogenic organic matter addition	64
Organic cropping systems alter metabolic potential and carbon, nitrogen and phosphorus cycling capacity of soil microbial communities	64
Soil legacies of a primary invader strongly drive secondary invasions for species that are phylogenetically distant	63
Soil clay minerals: An overlooked mediator of gross N transformations in Regosolic soils of subtropical montane landscapes	62
Effects of warming on bacterial growth rates in a peat soil under ambient and elevated CO2	61
Reductive dissolution of iron phosphate modifies rice root morphology in phosphorus-deficient paddy soils	60
Alternate wetting-drying had no preferences for rice P uptake but increased microbial P allocation to phospholipids: Evidence from dual 32P and 33P labeling	60
Kinetics of arsenic and antimony reduction and oxidation in peatlands treating mining-affected waters: Effects of microbes, temperature, and carbon substrate	59
Root exudation and rhizosphere microbial assembly are influenced by novel plant trait diversity in carrot genotypes	59
Spatial access and resource limitations control carbon mineralization in soils	59
Whole soil warming promotes surface soil carbon loss but deep soil carbon gain, depending on land management practices in temperate climate	58
Field application of pure polyethylene microplastic has no significant short-term effect on soil biological quality and function	58
Role of different size classes of organisms in cropped soils: What do litterbag experiments tell us? A meta-analysis	58
Disentangling carbon stabilization in a Calcisol subsoil amended with iron oxyhydroxides: A dual-13C isotope approach	57
Identification of the rhizosphere microbes that actively consume plant-derived carbon	57
Eukaryotes in soil aggregates across conservation managements: Major roles of protists, fungi and taxa linkages in soil structuring and C stock	57
Abundant and rare bacteria possess different diversity and function in crop monoculture and rotation systems across regional farmland	56
Mixing with coniferous tree species alleviates rhizosphere soil phosphorus limitation of broad-leaved trees in subtropical plantations	56
Plant root exudates and rhizosphere bacterial communities shift with neighbor context	55
Drought shifts soil nematodes to smaller size across biological scales	55
Editorial Board	55
Altered microbial CAZyme families indicated dead biomass decomposition following afforestation	55
Editorial Board	55
Do chromogenic assays of soil enzyme activities need buffers? More disadvantages than advantages of modified universal buffer in the para-nitrophenyl-based assay of phosphomonoesterase and β-glucosida	54
Primary carbon sources and self-induced metabolic landscapes shape community structure in soil bacterial hotspots	54
Rewetting alongside biochar and sulphate addition mitigates greenhouse gas emissions and retain carbon in degraded upland peatlands	54
Corrigendum to “Plant phenology modulates and undersown cover crops mitigate N2O emissions” [Soil Biol. Biochem. 198 (2024) 109548]	54
Forest restoration increases energy flow through the fungal channel and decreases energy flow through the herbivorous channel in soil micro-food webs	54
Alterations in substrate stoichiometry control the responses of soil diazotrophs to nutrient enrichment	54
Simplified estimates of soil nematode body mass using maximum diameter: Insights from large-scale grasslands across China	53
Regulation of soil nitrogen cycling by shrubs in grasslands	52
Factors predictive of the biogeographic distribution of comammox Nitrospira in terrestrial ecosystems	52
Tillage homogenizes soil bacterial communities in microaggregate fractions by facilitating dispersal	52
Spatiotemporal variation in soil methane uptake in a cool-temperate immature deciduous forest	51
Divergent responses of soil glomalin and microbial necromass to precipitation reduction: New perspectives from soil aggregates and multi-trophic networks	51
Soil nematode community profiling using reference-free mito-metagenomics	51
Evaluation of the relation between soil biomass of arbuscular mycorrhizal fungi and glomalin-related soil protein in conservation agriculture	50
Nitrifier controls on soil NO and N2O emissions in three chaparral ecosystems under contrasting atmospheric N inputs	50
Unravelling the facilitation-competition continuum among ectomycorrhizal and saprotrophic fungi	49
Root exudate stoichiometry is a key driver of soil N cycling: implications for forest responses to global change	49
Dynamic changes in bacterial community structure are associated with distinct priming effect patterns	49
Disproportional oxidation rates of ammonia and nitrite deciphers the heterogeneity of fertilizer-induced N2O emissions in agricultural soils	49
Molecular weight of dissolved organic matter determines its interactions with microbes and its assembly processes in soils	49
Phosphorus limitation regulates the responses of microbial carbon metabolism to long-term combined additions of nitrogen and phosphorus in a cropland	49
Priming effect varies with root order: A case of Cunninghamia lanceolata	49
Planar optodes reveal spatio-temporal heterogeneity of oxic and pH microenvironments driven by dung beetle activity in soil	49
Transferring concepts from plant to microbial ecology: A framework proposal to identify relevant bacterial functional traits	48
Priming effect on soil carbon decomposition by root exudate surrogates: A meta-analysis	48
Dynamic stability of mineral-associated organic matter: enhanced stability and turnover through organic fertilization in a temperate agricultural topsoil	48
Rice rhizodeposition promotes the build-up of organic carbon in soil via fungal necromass	48
Dominant plants affect litter decomposition mainly through modifications of the soil microbial community	48
Soil P availability and mycorrhizal type determine root exudation in sub-tropical forests	47
How does organic amendment affect soil microbial nitrate immobilization rate?	47
Litter diversity accelerates labile carbon but slows recalcitrant carbon decomposition	47
Modeling ecosystem-scale carbon dynamics in soil: The microbial dimension	47
Fiddler crab bioturbation stimulates methane emissions in mangroves: Insights into microbial mechanisms	47
Corrigendum to “A meta-analysis of global cropland soil carbon change from cover cropping” [Soil Biol. Biochem. 143 (2020) 107735]	46
Editorial Board	46
Microbial community assembly and its influencing factors of secondary forests in Qinling Mountains	46
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Structure and function of bacterial metaproteomes across biomes	44
The soil microbial methylome: A tool to explore the role of epigenetic memory in driving soil abiotic legacy effects	44
Earthworm influence on soil aggregate distribution and protected carbon at managed forest sites in Vermont, USA	44
Plant organ rather than cover crop species determines residue incorporation into SOC pools	43

Precipitation balances deterministic and stochastic processes of bacterial community assembly in grassland soils	43
Distinct seasonal and annual variability of prokaryotes, fungi and protists in cropland soil under different tillage systems and soil texture	43
Deciphering factors controlling decay and nitrogen accumulation in coarse wood debris of five tree species using 15N labeled wood disks	43
Differential accumulation patterns of microbial necromass induced by maize root vs. shoot residue addition in agricultural Alfisols	43
The only constant is change: Endogenous circadian rhythms of soil microbial activities	43
Microplastics exert minor influence on bacterial community succession during the aging of earthworm (Lumbricus terrestris) casts	43
Preceding crop legacy modulates the early growth of winter wheat by influencing root growth dynamics, rhizosphere processes, and microbial interactions	42
Co-localised phosphorus mobilization processes in the rhizosphere of field-grown maize jointly contribute to plant nutrition	42
Nitrogen addition increases the glucose-induced priming effect of the particulate but not the mineral-associated organic carbon fraction	42
Visualizing the transfer of organic matter from decaying plant residues to soil mineral surfaces controlled by microorganisms	42
N-induced soil acidification triggers metal stimulation of soil methane oxidation in a temperate steppe ecosystem	42
Elevated CO2 and nitrogen interactively affect the rhizosphere priming effect of Cunninghamia lanceolata	42
Aeolian dust deposition as a driver of cyanobacterial community structure in biological soil crusts	42
Linking Rock-Eval parameters to soil heterotrophic respiration and microbial residues in a black soil	42
When microclimates meet soil microbes: Temperature controls soil microbial diversity along an elevational gradient in subtropical forests	42
Degradation dynamics and microbial processes in yak dung on the Tibetan Plateau	42
Plant mixture effects on carbon-degrading enzymes promote soil organic carbon accumulation	42
Nematode community diversity and function across an alpine landscape undergoing plant colonization of previously unvegetated soils	41
High stochasticity in rare bacterial community assembly in rice-wheat rotation soils at a regional scale	41
Interplanting leguminous shrubs boosts the trophic interactions of soil micro-food web in a karst grassland	40
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Carbon cycle in the microbial ecosystems of biological soil crusts	40
Restructuring of soil food webs reduces carbon storage potential in boreal peatlands	40
Acidic amelioration of soil amendments improves soil health by impacting rhizosphere microbial assemblies	40
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D genome acquisition and breeding have had a significant impact on interaction of wheat with ACC deaminase producers in soil or ACC deaminase potential activity in the rhizosphere	39
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Seed treatment with plant-defense elicitors decreases the abundance of ammonia oxidizers associated with winter wheat roots	39
Editorial Board	39
Signal molecules and enzymes produced by Rhizobium leguminosarum sv. trifolii strains originating from the subpolar and temperate climate zones as elements of adaptation to low temperature stress	39
Obituary : Clive Arthur Tudor Edwards - 16 June 1925–20 July 2021	39
Distinct N-cycling microbial communities contribute to microtopographic variation in soil N2O emissions from denitrification	38
Specific utilization of biopolymers of plant and fungal origin reveals the existence of substrate-specific guilds for bacteria in temperate forest soils	38
The influence of forest-to-cropland conversion on temperature sensitivity of soil microbial respiration across tropical to temperate zones	38
Wood decomposition in poorly-drained forested wetland soils: How important are termites?	38
Seasonal changes in soil biofilm microbial communities	38
Phosphorus fertiliser source determines the allocation of root-derived organic carbon to soil organic matter fractions	38
The role of the soil microbiome in the colonisation of glacier forefields by Antarctic pearlwort (Colobanthus quitensis) under current and future climate change scenarios	38
Tracing sources and turnover of soil organic matter in a long-term irrigated dry forest using a novel hydrogen isotope approach	38
Global climate changes decoupled soil nitrogen mineralization and immobilization	38
Contributions of microbial necromass and plant lignin to soil organic carbon stock in a paddy field under simulated conditions of long-term elevated CO2 and warming	38
Deepened snow in combination with summer warming increases growing season nitrous oxide emissions in dry tundra, but not in wet tundra	37
Land use intensification homogenizes soil protist communities and alters their diversity across Europe	37
Iron oxidation coupled with nitrate reduction affects the acetate-assimilating microbial community structure elucidated by stable isotope probing in flooded paddy soil	37
Long-term N inputs shape microbial communities more strongly than current-year inputs in soils under 10-year continuous corn cropping	37
Polar soils exhibit distinct patterns in microbial diversity and dominant phylotypes	37
Decoupled responses of leaf and root decomposition to nutrient deposition in a subtropical plantation	37
The effects of tree-mycorrhizal type on soil organic matter properties from neighborhood to watershed scales	37
Adult body mass influences multi-element stoichiometry in ground beetles	36
Nitrogen deposition stimulates decomposition via changes in the structure and function of litter food webs	36
Nitrogen-15 natural abundance is robust to quantify nitrogen transfer from clover to grass in temporary grassland	36
Aridity thresholds of microbiome-soil function relationship along a climatic aridity gradient in alpine ecosystem	36
Linkages between the temperature sensitivity of soil respiration and microbial life strategy are dependent on sampling season	36
Lithologic control of microbial-derived carbon in forest soils	36
Biocrusts drive soil respiration across seasons and depths in a cold-winter desert	36
Bacterial community response to environmental change varies with depth in the surface soil	36
Soil microbial communities are driven by the declining availability of cations and phosphorus during ecosystem retrogression	35
Respiration and carbon use efficiency characteristics of soluble protein-derived carbon by soil microorganisms: A case study at afforested sites	35
Increase in iron-bound organic carbon content under simulated sea-level rise: A “marsh organ” field experiment	35
Aligning theoretical and empirical representations of soil carbon-to-nitrogen stoichiometry with process-based terrestrial biogeochemistry models	35
Opposite priming responses to labile carbon versus oxygen pulses in anoxic peat	35
A rapid and sensitive assay to quantify amino sugars, neutral sugars and uronic acid necromass biomarkers using pre-column derivatization, ultra-high-performance liquid chromatography and high-resolut	35
Shifts in C-degradation genes and microbial metabolic activity with vegetation types affected the surface soil organic carbon pool	35
Editorial Board	35
Year-round activity of microbial communities in cold-climate peatlands treating mining-affected waters	35
Arbuscular mycorrhizal fungal communities of pristine rainforests and adjacent sugarcane fields recruit from different species pools	34
Biocrusts regulate the effect of rainfall pulses on soil respiration at different temporal scales on the Loess Plateau	34
Revising the dynamic energy budget theory with a new reserve mobilization rule and three example applications to bacterial growth	34
Rigorous, empirical, and quantitative: a proposed pipeline for soil health assessments	34
Interactive dynamics between rhizosphere bacterial and viral communities facilitate soybean fitness to cadmium stress revealed by time-series metagenomics	34
Physical characterisation of chia mucilage polymeric gel and its implications on rhizosphere science - Integrating imaging, MRI, and modelling to gain insights into plant and microbial amended soils	34
Influences of arsenate and/or phosphate adsorption to ferrihydrite on iron-reducing and arsenic-reducing microbial communities in paddy soil revealed by rRNA-13C-acetate probing	34
Root exudates from drought-affected plants increase soil respiration across a range of grassland species	34
Strong conditionality in plant-fungal community assembly after soil inoculation in post-agricultural grasslands	34
Time-varying associations between absorptive fine roots and leaf litter decomposition across 23 plant species	33
Plant community composition and traits modulate the impacts of drought intensity on soil microbial community composition and function	33
Sorption strength determines alanine mineralization in volcanic soils	33
Are enzymes transported in soils by water fluxes?	33
Different stochastic processes regulate bacterial and fungal community assembly in estuarine wetland soils	33
Recording earthworm diversity on the tropical island of Martinique using DNA barcoding unveiled endemic species in bromeliad plants	33
Soil aggregate isolation method affects interpretation of protistan community	33
Use of metabolomics to quantify changes in soil microbial function in response to fertiliser nitrogen supply and extreme drought	33
Phosphorus addition decreases soil fungal richness and alters fungal guilds in two tropical forests	33
The role of earthworms in the transformation of labile plant litter into mineral-associated organic matter	33
Mapping of suitable habitats for earthworms in China	33
Insight into the role of competition in niche differentiation between ammonia-oxidizing archaea and bacteria in ammonium-rich alkaline soil: A network-based study	32
Earthworm invasion shifts trophic niches of ground-dwelling invertebrates in a North American forest	32
UV-B stress reshapes root-associated microbial communities and networks, driven by host plant resistance	32
Responses of soil rare and abundant microorganisms to recurring biotic disturbances	32
Obituary: Philip Charles Brookes: 26th March 1951–28th September 2023	32
Agronomic amendments drive a diversity of real and apparent priming responses within a grassland soil	32
Plants with nitrate preference can regulate nitrification to meet their nitrate demand	32
Life at the extreme: Plant-driven hotspots of soil nutrient cycling in the hyper-arid core of the Atacama Desert	32
Prolonged drought causes negative plant-soil feedbacks in grassland species under field conditions	32
Different factors control organic matter degradation in bulk and rhizosphere soil from the top- and subsoils of three forest stands	31