Mathematical Biosciences

Article	Citations
Measuring tree balance using symmetry nodes — A new balance index and its extremal properties	89
Controlling smoking: A smoking epidemic model with different smoking degrees in deterministic and stochastic environments	67
Processes governing species richness in communities exposed to temporal environmental stochasticity: A review and synthesis of modelling approaches	32
Effect of homophily on coupled behavior-disease dynamics near a tipping point	28
Imperfect vaccine can yield multiple Nash equilibria in vaccination games	22
Investigating the eco-evolutionary tunnels for establishing cooperative communities	21
Analyzing the use of non-pharmaceutical personal protective measures through self-interest and social optimum for the control of an emerging disease	20
Effect of cross-immunity in a two-strain cholera model with aquatic component	20
Editorial Board	19
Optimization of additive chemotherapy combinations for an in vitro cell cycle model with constant drug exposures	19
Influence of telomerase activity and initial distribution on human follicular aging: Moving from a discrete to a continuum model	17
A new method for the estimation of stochastic epidemic descriptors reinforced by Kalman-based dynamic parameter estimation. Application to mpox data	16
Editorial Board	16
Mycoloop: Modeling phytoplankton–chytrid–zooplankton interactions in aquatic food webs	15
Interplay of virulence factors shapes ecology and treatment outcomes in polymicrobial infections	15
On the role of vesicle transport in neurite growth: Modeling and experiments	14
Editorial Board	13
Minimising the use of costly control measures in an epidemic elimination strategy: A simple mathematical model	13
Overcoming the impossibility of age-balanced harvest	13
Machine learning provides insight into models of heterogeneous electrical activity in human beta-cells	12
A joint-threshold Filippov model describing the effect of intermittent androgen-deprivation therapy in controlling prostate cancer	12
Fractional modelling of COVID-19 transmission incorporating asymptomatic and super-spreader individuals	11
A stochastic programming approach to the antibiotics time machine problem	11
Sequential allocation of vaccine to control an infectious disease	11
Editorial Board	11

A simple model of coupled individual behavior and its impact on epidemic dynamics	11
Metabolic blood flow regulation in a hybrid model of the human retinal microcirculation	11
We are all different: Modeling key individual differences in physiological systems	10
Variation in environmental stochasticity dramatically affects viability and extinction time in a predator–prey system with high prey group cohesion	10
Learning transmission dynamics modelling of COVID-19 using comomodels	10
Predicting resistance and pseudoprogression: are minimalistic immunoediting mathematical models capable of forecasting checkpoint inhibitor treatment outcomes in lung cancer?	10
Cell orientation under stretch: Stability of a linear viscoelastic model	9
Optimal control of species augmentation in a competition model	9
A stochastic model for neural progenitor dynamics in the mouse cerebral cortex	9
Exploring trade-offs in drug administration for cancer treatment: A multi-criteria optimisation approach	9
Randomness accelerates the dynamic clearing process of the COVID-19 outbreaks in China	9
A framework for the modelling and the analysis of epidemiological spread in commuting populations	9
Mechanistic gene networks inferred from single-cell data with an outlier-insensitive method	8
Mathematical modeling of spatio-temporal population dynamics and application to epidemic spreading	8
Assessing the accuracy of an imperfect dichotomous test in a multiple testing context	8
Optimal allocation of limited vaccine to control an infectious disease: Simple analytical conditions	8
Nonlinear control designs and their application to cancer differentiation therapy	8
Finding analytical approximations for discrete, stochastic, individual-based models of ecology	8
Mechanistic models are hypotheses: A perspective	8
Life-History traits and the replicator equation	7
Stability of periodic solution for a free boundary problem modeling small plaques	7
Applying a multi-strain dengue model to epidemics data	7
Extinction in host–vector infection models and the role of heterogeneity	7
Classification of 2-node excitatory–inhibitory networks	7
A spatiotemporal model for the effects of toxicants on the competitive dynamics of aquatic species	7
Predicting the results of competition between two breast cancer lines grown in 3-D spheroid culture	7
Modeling the interplay between disease spread, behaviors, and disease perception with a data-driven approach	7
A mathematical modeling study of the effectiveness of contact tracing in reducing the spread of infectious diseases with incubation period	7
Editorial Board	7
Hypergraphs and centrality measures identifying key features in gene expression data	6
The dynamics of casual groups can keep free-riders at bay	6
Deconstructing the integrated oscillator model for pancreatic β-ce	6
Editorial Board	6
Existence and stability criteria for global synchrony and for synchrony in two alternating clusters of pulse-coupled oscillators updated to include conduction delays	6
Social vs. individual age-dependent costs of imperfect vaccination	6
Mathematical modelling of the mosquito Aedes polynesiensis in a heterogeneous environment	6
Mathematical modeling of neuroblast migration towards the olfactory bulb	6
Book Review	6
Editorial Board	6
An SEIR network epidemic model with manual and digital contact tracing allowing delays	6
Using observed incidence to calibrate the transmission level of a mathematical model for Plasmodium vivax dynamics including case management and importation	6
Modulation of nuclear and cytoplasmic mRNA fluctuations by time-dependent stimuli: Analytical distributions	6
Modeling and analysis of a human papilloma virus transmission model with impact of media	6
Model reduction for initial value ODEs	6
Editorial Board	6
Rate-limiting recovery processes in neurotransmission under sustained stimulation	6
Analysis of tumor-immune functional responses in a mathematical model of neoantigen cancer vaccines	6
Topological data analysis of antibody dynamics of severe and non-severe patients with COVID-19	6
Spatio-temporal model of combining chemotherapy with senolytic treatment in lung cancer	5
Effects of nonlinear impulsive controls and seasonality on hantavirus infection	5

Profile likelihood-based parameter and predictive interval analysis guides model choice for ecological population dynamics	5
Epidemic spread on patch networks with community structure	5
Probabilistic models of uORF-mediated ATF4 translation control	5
A non local model for cell migration in response to mechanical stimuli	5
A machine learning model for nowcasting epidemic incidence	5
Lockdown measures and their impact on single- and two-age-structured epidemic model for the COVID-19 outbreak in Mexico	5
Modeling the synergistic interplay between malaria dynamics and economic growth	5
The impact of risk compensation adaptive behavior on the final epidemic size	5
Editorial Board	5
Combining mathematical modeling and deep learning to make rapid and explainable predictions of the patient-specific response to anticoagulant therapy under venous flow	5
Genome-wide covariation in SARS-CoV-2	5
Critical assessment of the impact of vaccine-type and immunity on the burden of COVID-19	5
A stochastic framework for evaluating CAR T cell therapy efficacy and variability	4
Modeling realistic synaptic inputs of CA1 hippocampal pyramidal neurons and interneurons via Adaptive Generalized Leaky Integrate-and-Fire models	4
A metapopulation model with exit screening measure for the 2014–2016 West Africa Ebola virus outbreak	4
Efficacy of the Sterile Insect Technique in the presence of inaccessible areas: A study using two-patch models	4
Stochastic modeling of SIS epidemics with logarithmic Ornstein–Uhlenbeck process and generalized nonlinear incidence	4
Dynamic analysis of a drug resistance evolution model with nonlinear immune response	4
Bifurcations of higher codimension in a Leslie–Gower predator–prey model with Holling II functional response and weak Allee effect	4
Editorial Board	4
Likelihood function for estimating parameters in multistate disease process with Laplace-transformation-based transition probabilities	4
Open problems in mathematical biology	4
Determinants of successful disease control through voluntary quarantine dynamics on social networks	4
To Sobol or not to Sobol? The effects of sampling schemes in systems biology applications	4
From economic threshold to economic injury level: Modeling the residual effect and delayed response of pesticide application	4
Emergence of non-trivial solutions from trivial solutions in reaction–diffusion equations for pattern formation	4
His and her mathematical models of physiological systems	4
The impact of water storage capacity on plant dynamics in arid environments: A stoichiometric modeling approach	4
Different mechanisms of CD200-CD200R induce diverse outcomes in cancer treatment	4
A simple model for how the risk of pandemics from different virus families depends on viral and human traits	4
Infection-induced host extinction: Deterministic and stochastic models for environmentally transmitted pathogens	4
Dynamics of phase tumbling and the reentrainment of circadian oscillators	4
Two-step global sensitivity analysis of a non-local integro-differential model for Cancer-on-Chip experiments	3
Infection propagation in a tissue with resident macrophages	3
Interaction intensity in strategic fitness: A quantifying yardstick of selection optimization for evolutionary game	3
Editorial Board	3
A mathematical model for the within-host (re)infection dynamics of SARS-CoV-2	3
Editorial Board	3
Different routes of infection of H5N1 lead to changes in infecting time	3
Editorial Board	3
A yeast cell cycle pulse generator model shows consistency with multiple oscillatory and checkpoint mutant datasets	3
A simultaneous simulation of human behavior dynamics and epidemic spread: A multi-country study amidst the COVID-19 pandemic	3
Target reproduction numbers for time-delayed population systems	3
Stochastic two-strain epidemic model with saturated incidence rates driven by Lévy noise	3
A theory for viral rebound after antiviral treatment: A study case for SARS-CoV-2	3
Mathematical modeling of brain metastases growth and response to therapies: A review	3
Patterning of nonlocal transport models in biology: The impact of spatial dimension	3
Chemotaxis effects on the vascular tumor growth: Phase-field model and simulations	3
Mathematical modelling of atrial and ventricular pressure–volume dynamics and their change with heart rate	3
An augmented phase plane approach for discrete planar maps: Introducing next-iterate operators	3
Challenges in cybersecurity: Lessons from biological defense systems	3
A simple model for the analysis of epidemics based on hospitalization data	3
Modeling correlated uncertainties in stochastic compartmental models	3
Towards a new combination therapy with vectored immunoprophylaxis for HIV: Modeling “shock and kill” strategy	3
Partial mean-field model for neurotransmission dynamics	3
Emergence of multiple foraging strategies under competition	3
Editorial Board	3
Coupling dynamics of 2D Notch-Delta signalling	3
Optimal allocation of limited vaccine to minimize the effective reproduction number	3
Global dynamics of a compartmental model to assess the effect of transmission from deceased	2
A fully dynamical theory for the rate of arterial gas embolism growth and dissolution	2
Editorial Board	2
A mathematical model of protein subunits COVID-19 vaccines	2
Mathematically modeling the effect of touch frequency on the environmental transmission of Clostridioides difficile in healthcare settings	2
A ‘Portfolio of Model Approximations’ approach to understanding invasion success with vector-borne disease	2
Combining mutation and horizontal gene transfer in a within-host model of antibiotic resistance	2
Modeling county level COVID-19 transmission in the greater St. Louis area: Challenges of uncertainty and identifiability when fitting mechanistic models to time-varying processes	2
Mechanical causes and implications of repetitive DNA motifs	2
Great fish war with moratorium	2
Impact of heterogeneity on infection probability: Insights from single-hit dose-response models	2
A stochastic model for the bacterial growth exhibiting staged growth, desynchronization, saturation and persistence	2
Spatial heterogeneity analysis for the transmission of syphilis disease in China via a data-validated reaction–diffusion model	2
Variant-specific interventions to slow down replacement and prevent outbreaks	2
Editorial Board	2
How to correctly fit an SIR model to data from an SEIR model?	2
A systematic review of mathematical models of Lassa fever	2
A closed-loop multi-scale model for intrinsic frequency-dependent regulation of axonal growth	2
Mathematical model for IL-2-based cancer immunotherapy	2
Editorial Board	2
Mathematical modeling and analysis of the heat shock protein response during thermal stress in fish and HeLa cells	2

Optimal control of the SIR model with constrained policy, with an application to COVID-19	2
A mechanistic modeling and estimation framework for environmental pathogen surveillance	2
Modeling of network based digital contact tracing and testing strategies, including the pre-exposure notification system, for the COVID-19 pandemic	2
NREM–REM alternation complicates transitions from napping to non-napping behavior in a three-state model of sleep–wake regulation	2
Modeling the life cycle of the spotted lanternfly (Lycorma delicatula) with management implications	2
Spatially localized cluster solutions in inhibitory neural networks	2
Stratified epidemic model using a latent marked Hawkes process	2
Editorial Board	2
The effects of tritiated water on competitive outcomes of two Daphnia species in lakes: A reaction–diffusion tritium-taxis model	2
Analyzing time activity curves from spatio-temporal tracer data to determine tracer transport velocity in plants	2
A soluble model for synchronized rhythmic activity in ant colonies	2
Fibrotic extracellular matrix preferentially induces a partial Epithelial–Mesenchymal Transition phenotype in a 3-D agent based model of fibrosis	2
Theoretical quantification of the polyvalent binding of nanoparticles coated with peptide-major histocompatibility complex to T cell receptor-nanoclusters	2
Optimal classification and generalized prevalence estimates for diagnostic settings with more than two classes	2
Stochastic Epidemic Models inference and diagnosis with Poisson Random Measure Data Augmentation	2
Editorial Board	2
A local polynomial moment approximation for compartmentalized biochemical systems	2
Population dynamics of a stoichiometric aquatic tri-trophic level model with fear effect	2
Post-pandemic modeling of COVID-19: Waning immunity determines recurrence frequency	2
Comparing the long-term persistence of different Wolbachia strains after the release of bacteria-carrying mosquitoes	2
Allee effects introduced by density dependent phenology	1
Editorial Board	1
A constrained optimisation framework for parameter identification of the SIRD model	1
Assessment of effective mitigation and prediction of the spread of SARS-CoV-2 in Germany using demographic information and spatial resolution	1
A two-galectin network establishes mesenchymal condensation phenotype in limb development	1
In silico modeling of endocrine organ-on-a-chip systems	1
Modelling the stochastic importation dynamics and establishment of novel pathogenic strains using a general branching processes framework	1
Editorial Board	1
A conceptual framework for modeling a latching mechanism for cell cycle regulation	1
Evidence of the cooperative response of Blattella germanica gut microbiota to antibiotic treatment	1
Editorial Board	1
Adolescent vaping behaviours: Exploring the dynamics of a social contagion model	1
Editorial Board	1
Analyzing the effects of observation function selection in ensemble Kalman filtering for epidemic models	1
Estimating cellular redundancy in networks of genetic expression	1
Bloom dynamics under the effects of periodic driving forces	1
A numerical evaluation of the economic tradeoff of vaccination against chikungunya virus in Brazil	1
Sustainable scenarios in a plants–rhizobacteria–plant consumers system are in risk when biotic or abiotic factors change	1
A dynamical adaptation model of visual spatiotemporal processing in cones and horizontal cells	1
Insights of infected Schwann cells extinction and inherited randomness in a stochastic model of leprosy	1
Impact of enzyme turnover on the dynamics of the Michaelis–Menten model	1
Sustainable management of predatory fish affected by an Allee effect through marine protected areas and taxation	1
Effects of fish–human transmission and different life stages of fish on Clonorchiasis: A novel mathematical model	1
A birth–death model to understand bacterial antimicrobial heteroresistance from time-kill curves	1
Identifying patterning behavior in a plant infestation of insect pests	1
WENDY: Covariance dynamics based gene regulatory network inference	1
Efficient and scalable prediction of stochastic reaction–diffusion processes using graph neural networks	1
Analysis of the absorption kinetics following dermal exposure to large doses of volatile organic compounds	1
Modeling the effects of size-dependent harvesting strategies on the population dynamics of tropical trees	1
On the necessity of accounting for age structure in human malaria transmission modeling	1
Deficient cell-cell cohesion is linked with lobular localization in simplified models of lobular carcinoma in situ (LCIS)	1
Role of non-exponential reversal times in aggregation models of bacterial populations	1
A hybrid spatiotemporal model of PCa dynamics and insights into optimal therapeutic strategies	1
Unraveling the influence of the objective functional on epidemic optimal control: Insights from the SIR model	1
On the anti-quasi-steady-state conditions of enzyme kinetics	1
Fractional-order modeling of myocardium structure effects on atrial fibrillation electrograms	1
A simple derivation of the mean of the Sackin index of tree balance under the uniform model on rooted binary labeled trees	1
Generalized measures of population synchrony	1
Random evolutionary dynamics in predator–prey systems yields large, clustered ecosystems	1
Competing elastic and viscous gradients determine directional cell migration	1
Editorial Board	1
Dynamics aspects and bifurcations of a tumor-immune system interaction under stationary immunotherapy	1
Network thermodynamics of biological systems: A bond graph approach	1
Parameter estimation for closed-loop lumped parameter models of the systemic circulation using synthetic data	1
Infection thresholds for two interacting pathogens in a wild animal population	1
A topological data analysis study on murine pulmonary arterial trees with pulmonary hypertension	1
Editorial Board	1
Pairwise and higher-order epistatic effects among somatic cancer mutations across oncogenesis	1
In Memory of Edmund John Crampin: Multi-scale and multi-physics phenomena in biology	1