Journal of Theoretical Biology

Article	Citations
Estimating the reproductive number R0 of SARS-CoV-2 in the United States and eight European countries and implications for vaccination	107
Predicting the second wave of COVID-19 in Washtenaw County, MI	64
Optimal strategies for social distancing and testing to control COVID-19	60
Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold	59
Predicting the number of reported and unreported cases for the COVID-19 epidemics in China, South Korea, Italy, France, Germany and United Kingdom	57
Optimal strategies for vaccination and social distancing in a game-theoretic epidemiologic model	48
Parameter identifiability and model selection for sigmoid population growth models	47
A novel COVID-19 epidemiological model with explicit susceptible and asymptomatic isolation compartments reveals unexpected consequences of timing social distancing	39
Impact of intervention on the spread of COVID-19 in India: A model based study	39
COVID-19 endgame: From pandemic to endemic? Vaccination, reopening and evolution in low- and high-vaccinated populations	38
Joint impacts of media, vaccination and treatment on an epidemic Filippov model with application to COVID-19	36
A multi-strain epidemic model for COVID-19 with infected and asymptomatic cases: Application to French data	34
Dynamics of a stage-structured predator-prey model: cost and benefit of fear-induced group defense	33
Effects of latency and age structure on the dynamics and containment of COVID-19	32
A behavioural modelling approach to assess the impact of COVID-19 vaccine hesitancy	31
Network models to evaluate vaccine strategies towards herd immunity in COVID-19	30
An ecological framework for the analysis of prebiotic chemical reaction networks	29
Rolling-circle and strand-displacement mechanisms for non-enzymatic RNA replication at the time of the origin of life	29
How best can finite-time social distancing reduce epidemic final size?	27
Modelling the effects of the contaminated environments on tuberculosis in Jiangsu, China	26
Optimal control of pattern formations for an SIR reaction–diffusion epidemic model	26
Human choice to self-isolate in the face of the COVID-19 pandemic: A game dynamic modelling approach	25
Governance of risky public goods under graduated punishment	25
Photoinhibition in optically thick samples: Effects of light attenuation on chlorophyll fluorescence-based parameters	24
Matrix adhesion and remodeling diversifies modes of cancer invasion across spatial scales	24

Model-based data analysis of tissue growth in thin 3D printed scaffolds	24
Rapid, large-scale, and effective detection of COVID-19 via non-adaptive testing	23
Mathematical investigation of innate immune responses to lung cancer: The role of macrophages with mixed phenotypes	23
Modelling COVID-19 dynamics and potential for herd immunity by vaccination in Austria, Luxembourg and Sweden	23
Eco-evolutionary dynamics of cooperation in the presence of policing	21
Modelling within-host macrophage dynamics in influenza virus infection	19
Symbiotic behaviour in the public goods game with altruistic punishment	19
An RNA-based theory of natural universal computation	19
A virtual host model of Mycobacterium tuberculosis infection identifies early immune events as predictive of infection outcomes	18
Distinguishing viruses responsible for influenza-like illness	18
Control of tumor growth distributions through kinetic methods	17
Modeling the outbreak and control of African swine fever virus in large-scale pig farms	17
Multi-method global sensitivity analysis of mathematical models	17
Estimating local outbreak risks and the effects of non-pharmaceutical interventions in age-structured populations: SARS-CoV-2 as a case study	16
When to lift the lockdown in Hubei province during COVID-19 epidemic? An insight from a patch model and multiple source data	16
Heterogeneity in susceptibility dictates the order of epidemic models	16
Transmission dynamics of COVID-19 in Nepal: Mathematical model uncovering effective controls	16
Modelling strategies to organize healthcare workforce during pandemics: Application to COVID-19	16
A type IV functional response with different shapes in a predator–prey model	16
Ascertainment rate of SARS-CoV-2 infections from healthcare and community testing in the UK	16
Internal phosphorus recycling promotes rich and complex dynamics in an algae-phosphorus model: Implications for eutrophication management	15
Mathematical modeling of atherogenesis: Atheroprotective role of HDL	15
Design of an engineered ACE2 as a novel therapeutics against COVID-19	14
Evolution of state-dependent strategies in stochastic games	14
Structure-function relationships in the feto-placental circulation from in silico interpretation of micro-CT vascular structures	14
Differential impacts of contact tracing and lockdowns on outbreak size in COVID-19 model applied to China	14
Modelling female physiology from head to Toe: Impact of sex hormones, menstrual cycle, and pregnancy	14
A mathematical model to study the impact of intra-tumour heterogeneity on anti-tumour CD8+ T cell immune response	13
Free ticket, discount ticket or intermediate of the best of two worlds – Which subsidy policy is socially optimal to suppress the disease spreading?	13
Competition delays multi-drug resistance evolution during combination therapy	13
A simple correction for COVID-19 sampling bias	13
Role of vascular smooth muscle cell phenotypic switching in plaque progression: A hybrid modeling study	13
Dynamics of kinesin motor proteins under longitudinal and sideways loads	13
Co-adaptive behavior of interacting populations in a habitat selection game significantly impacts ecosystem functions	13
Projecting COVID-19 cases and hospital burden in Ohio	13
Emergence of ribozyme and tRNA-like structures from mineral-rich muddy pools on prebiotic earth	12
Projecting the COVID-19 immune landscape in Japan in the presence of waning immunity and booster vaccination	12
Inference on the structure of gene regulatory networks	12
Analysis of individual strategies for artificial and natural immunity with imperfectness and durability of protection	12
A white noise approach to evolutionary ecology	12
Enhanced species coexistence in Lotka-Volterra competition models due to nonlocal interactions	12
Ecological and evolutionary consequences of predator-prey role reversal: Allee effect and catastrophic predator extinction	12
Towards the virtual tumor for optimizing radiotherapy treatments of hypoxic tumors: A novel model of heterogeneous tissue vasculature and oxygenation	12
Spatio-temporal modelling of phenotypic heterogeneity in tumour tissues and its impact on radiotherapy treatment	12
The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data	12
Individual specialization and generalization in predator-prey dynamics: The determinant role of predation efficiency and prey reproductive rates	12
The components of directional and disruptive selection in heterogeneous group-structured populations	11
Mathematical modeling of tumor-immune system interactions: the effect of rituximab on breast cancer immune response	11
Best response dynamics improve sustainability and equity outcomes in common-pool resources problems, compared to imitation dynamics	11
Mathematical modelling of the hematopoietic stem cell-niche system: Clonal dominance based on stem cell fitness.	11

Co-inoculation with arbuscular mycorrhizal fungi differing in carbon sink strength induces a synergistic effect in plant growth	11
A DNA-structured mathematical model of cell-cycle progression in cyclic hypoxia	11
The ecology of cancer differentiation therapy	11
How optimal allocation of limited testing capacity changes epidemic dynamics	11
Modelling somatic mutation accumulation and expansion in a long-lived tree with hierarchical modular architecture	11
An ensemble mixed effects model of sleep loss and performance	11
Rules of nature’s Formula Run: Muscle mechanics during late stance is the key to explaining maximum running speed	11
Patterns of reported infection and reinfection of SARS-CoV-2 in England	11
Population dynamic regulators in an empirical predator-prey system	10
Linking the disease transmission to information dissemination dynamics: An insight from a multi-scale model study	10
A model of COVID-19 propagation based on a gamma subordinated negative binomial branching process	10
Predator avoidance and foraging for food shape synchrony and response to perturbations in trophic metacommunities	10
Modelling cell guidance and curvature control in evolving biological tissues	10
Eco-evolutionary cyclic dominance among predators, prey, and parasites	10
The study of myocardial ischemia-reperfusion treatment through computational modelling	10
Density dependent Resource Budget Model for alternate bearing	10
Temporal signaling, population control, and information processing through chromatin-mediated gene regulation	10
Dynamics of sensory integration of olfactory and mechanical stimuli within the response patterns of moth antennal lobe neurons	10
A practical guide to mathematical methods for estimating infectious disease outbreak risks	10
Habitual sleep duration affects recovery from acute sleep deprivation: A modeling study	10
On the Fourier transform of a quantitative trait: Implications for compressive sensing	10
A direct comparison of methods for assessing the threat from emerging infectious diseases in seasonally varying environments	10
How the resource supply distribution structures competitive communities	9
Are host control strategies effective to eradicate tick-borne diseases (TBD)?	9
Mathematical modelling of SARS-CoV-2 infection of human and animal host cells reveals differences in the infection rates and delays in viral particle production by infected cells	9
A multi-strain model with asymptomatic transmission: Application to COVID-19 in the US	9
Multiple cohort study of hospitalized SARS-CoV-2 in-host infection dynamics: Parameter estimates, identifiability, sensitivity and the eclipse phase profile	9
Hamilton’s rule, gradual evolution, and the optimal (feedback) control of phenotypically plastic traits	9
The heterogeneous mixing model of COVID-19 with interventions	9
Modeling continuous glucose monitoring with fractional differential equations subject to shocks	9
Conditions under which distributions of edge length ratios on phylogenetic trees can be used to order evolutionary events	9
Reliable and efficient parameter estimation using approximate continuum limit descriptions of stochastic models	9
A novel 3D atomistic-continuum cancer invasion model: In silico simulations of an in vitro organotypic invasion assay	9
Effect of feedback regulation on stem cell fractions in tissues and tumors: Understanding chemoresistance in cancer	9
Competitive effects in bacterial mRNA decay	9
Modeling HIV multiple infection	9
The Moon illusion explained by the projective consciousness model	9
Spatiotemporal pattern recognition and dynamical analysis of COVID-19 in Shanghai, China	9
A Monte Carlo method to estimate cell population heterogeneity from cell snapshot data	9
The Role of Biofilms, Bacterial Phenotypes, and Innate Immune Response in Mycobacterium avium Colonization to Infection	9
Aging-induced fragility of the immune system	9
Pandemic modelling for regions implementing an elimination strategy	9
Optimal heat transport induced by magnetic nanoparticle delivery in vascularised tumours	9
The effectiveness of various control strategies: An insight from a comparison modelling study	9
Imaging the living brain: An argument for ruthless reductionism from olfactory neurobiology	8
Mathematical modeling of ventilator-induced lung inflammation	8
An investigation of the effect of brain atrophy on brain injury in multiple sclerosis	8
Identifiability and inference of phylogenetic birth–death models	8
Modeling the effect of immunotherapies on human castration-resistant prostate cancer	8
Coevolutionary dynamics of genetic traits and their long-term extended effects under non-random interactions	8
Designing experimental conditions to use the Lotka–Volterra model to infer tumor cell line interaction types	8
A PID controller for synchronization between master-slave neurons in fractional-order of neocortical network model	8
Propagation of invasive plant species in the presence of a road	8
The adaptive value of tandem communication in ants: Insights from an agent-based model	8
Perivascular pumping in the mouse brain: Improved boundary conditions reconcile theory, simulation, and experiment	8
A mathematical model of the multiple sclerosis plaque	8
Evolutionary dynamics of zero-determinant strategies in repeated multiplayer games	8
A two-sex model of human papillomavirus infection: Vaccination strategies and a case study	8
Bifurcation and sensitivity analysis reveal key drivers of multistability in a model of macrophage polarization	8
A mechanochemical model for rho GTPase mediated cell polarization	8
Temperature robustness in Arabidopsis circadian clock models is facilitated by repressive interactions, autoregulation, and three-node feedbacks	8
Three-dimensional random walk models of individual animal movement and their application to trap counts modelling	8
Chaos in memory function of sleep: A nonlinear dynamical analysis in thalamocortical study	8
Signal transduction in cognitive systems: Origin and dynamics of the inverted-U/U dose-response relations	8
The role of mound functions and local environment in the diversity of termite mound structures	8
The role of alcohol consumption on acetaminophen induced liver injury: Implications from a mathematical model	8
Schooling in habitats with aggregative sites: The case of tropical tuna and floating objects	8
A unified mathematical model of thyroid hormone regulation and implication for personalized treatment of thyroid disorders	8
A spatio-stochastic model for the spread of infectious diseases	8
The role of syncytia during viral infections	8
Control analysis of electrical stimulation for epilepsy waveforms in a thalamocortical network	8
A theoretical analysis of the scale separation in a model to predict solid tumour growth	8
Analysis of aerodynamic and electrostatic sensing in mechanoreceptor arthropod hairs	7
Cell orientation under stretch: A review of experimental findings and mathematical modelling	7
Workplace absenteeism due to COVID-19 and influenza across Canada: A mathematical model	7
A broader context for understanding amino acid alphabet optimality	7
Delay-driven oscillations via Axin2 feedback in the Wnt/β-catenin signalling	7
Uncovering potential interventions for pancreatic cancer patients via mathematical modeling	7
Deep learning characterization of brain tumours with diffusion weighted imaging	7
How temporal environmental stochasticity affects species richness: Destabilization, neutralization and the storage effect	7

Modelling count data with partial differential equation models in biology	7
A multiscale multicellular spatiotemporal model of local influenza infection and immune response	7
Rule-based epidemic models	7
Resource allocation in tragedy of the commons game in plants for belowground competition	7
Effective nonlocal kernels on reaction–diffusion networks	7
Sterile males and females can synergistically suppress wild pests targeted by sterile insect technique	7
Vaccine hesitancy promotes emergence of new SARS-CoV-2 variants	7
Anticipating future learning affects current control decisions: A comparison between passive and active adaptive management in an epidemiological setting	7
A novel nonlocal partial differential equation model of endothelial progenitor cell cluster formation during the early stages of vasculogenesis	7
Deciphering the dynamics of lamellipodium in a fish keratocytes model	7
Dynamical properties of feedback signalling in B lymphopoiesis: A mathematical modelling approach	7
A quantitative method to project the probability of the end of an epidemic: Application to the COVID-19 outbreak in Wuhan, 2020	7
Phenotypic variation modulates the growth dynamics and response to radiotherapy of solid tumours under normoxia and hypoxia	7
Mathematical modelling to assess the feasibility of Wolbachia in malaria vector biocontrol	7
Bidirectional, unlike unidirectional transport, allows transporting axonal cargos against their concentration gradient	7
Fluid dynamic simulation suggests hopping locomotion in the Ordovician trilobite Placoparia	7
The role of RdCVFL in a mathematical model of photoreceptor interactions	7
Assessing the impact of insecticide-treated nets in the face of insecticide resistance on malaria control	7
First passage time properties of miRNA-mediated protein translation	7
Global sensitivity analysis informed model reduction and selection applied to a Valsalva maneuver model	7
On deriving Murray’s law from constrained minimization of flow resistance	7
Modeling dynamics of cancer radiovirotherapy	7
A computational model of cell membrane bioelectric polarization and depolarization, connected with cell proliferation, in different tissue geometries	7
Selection principles for Gaia	7
From insulin to Akt: Time delays and dominant processes	7
Inflected wings in flight: Uniform flow of stresses makes strong and light wings for stable flight	7
Network modeling and inference of peroxisome proliferator-activated receptor pathway in high fat diet-linked obesity	6
Genetic polymorphism under cyclical selection in long-lived species: The complex effect of age structure and maternal selection	6
Beyond the limits of circadian entrainment: Non-24-h sleep-wake disorder, shift work, and social jet lag	6
Combined anti-angiogenic and cytotoxic treatment of a solid tumour: in silico investigation of a xenograft animal model’s digital twin	6
Mathematical modelling of autoimmune myocarditis and the effects of immune checkpoint inhibitors	6
Animal intermittent locomotion: A null model for the probability of moving forward in bounded space	6
Modeling the synergistic properties of drugs in hormonal treatment for prostate cancer	6
Modelling how increased Cathepsin B/L and decreased TMPRSS2 usage for cell entry by the SARS-CoV-2 Omicron variant may affect the efficacy and synergy of TMPRSS2 and Cathepsin B/L inhibitors	6
Trade-off between climatic and human population impacts on Aedes aegypti life history shapes its geographic distribution	6
Study of dose-dependent combination immunotherapy using engineered T cells and IL-2 in cervical cancer	6
A mathematical model of immunomodulatory treatment in myocardial infarction	6
Mathematical modelling of haemorrhagic transformation after ischaemic stroke	6
Ethnic homophily affects vaccine prioritization strategies	6
Disease dynamics and mean field models for clustered networks	6
Artificial selection of communities drives the emergence of structured interactions	6
A mathematical model of the within-host kinetics of SARS-CoV-2 neutralizing antibodies following COVID-19 vaccination	6
The novel Ideal Symmetry Genetic Code table – Common purine-pyrimidine symmetry net for all RNA and DNA species	6
Lockhart with a twist: Modelling cellulose microfibril deposition and reorientation reveals twisting plant cell growth mechanisms	6
Stochastic modelling of collective motor protein transport through a crossing of microtubules	6
Memory-driven movement model for periodic migrations	6
A dynamic model for spread of livestock-associated methicillin-resistant Staphylococcus aureus on a pig farm, incorporating bacterial load and human exposure through air	6
Optimization of antitumor radiotherapy fractionation via mathematical modeling with account of 4 R’s of radiobiology	6
Fitness dependence preserves selection for recombination across diverse mixed mating strategies	6
The non-pharmaceutical interventions may affect the advantage in transmission of mutated variants during epidemics: A conceptual model for COVID-19	6
Optimal pollen stickiness to pollinators for maximizing paternal fitness: Increased number of recipient flowers or increased pollen deposition on recipient flowers?	6
Cerebrospinal fluid flow driven by arterial pulsations in axisymmetric perivascular spaces: Analogy with Taylor’s swimming sheet	6
Effect of the group size on the evolution of cooperation when an exit option is present	6
A hybrid discrete-continuum model of immune responses to SARS-CoV-2 infection in the lung alveolar region, with a focus on interferon induced innate response	6
Modeling identifies variability in SARS-CoV-2 uptake and eclipse phase by infected cells as principal drivers of extreme variability in nasal viral load in the 48 h post infection	6
Modelling the effects of environmental heterogeneity within the lung on the tuberculosis life-cycle	6
Hormonal regulation of ovarian follicle growth in humans: Model-based exploration of cycle variability and parameter sensitivities	6
Evolutionary game in an androdioecious population: Coupling of outcrossing and male production	6
Modeling the subjective perspective of consciousness and its role in the control of behaviours	6
Calcium-dependent insulin resistance in hepatocytes: mathematical model	5
Conditions for the existence of zero-determinant strategies under observation errors in repeated games	5
Modelling the impact of repeat asymptomatic testing policies for staff on SARS-CoV-2 transmission potential	5
A bidirectional Hopf bifurcation analysis of Parkinson’s oscillation in a simplified basal ganglia model	5
Critical observation of WHO recommended multidrug therapy on the disease leprosy through mathematical study	5
A Josephson junction-coupled neuron with double capacitive membranes	5
Two-strategy games with time constraints on regular graphs	5
A Tale of two receptors	5
A theoretical model for the Fåhræus effect in medium–large microvessels	5
Prevention and control of OQDS (olive quick decline syndrome) outbreaks caused by Xylella fastidiosa.	5
Boolean function metrics can assist modelers to check and choose logical rules	5
Evolutionary game dynamics with non-uniform interaction rates in finite population	5
Inference on tissue transplantation experiments	5
Combining refuges with transgenic insect releases for the management of an insect pest with non-recessive resistance to Bt crops in agricultural landscapes	5
Exploring COVID-19 transmission patterns and key factors during epidemics caused by three major strains in Asia	5
Olfactory encoding within the insect antennal lobe: The emergence and role of higher order temporal correlations in the dynamics of antennal lobe spiking activity	5
Diffusion approximations in population genetics and the rate of Muller’s ratchet	5
Parasite evolution in an age-structured population	5
Lepidopteran mouthpart architecture suggests a new mechanism of fluid uptake by insects with long proboscises	5
Optimal dormancy strategies in fluctuating environments given delays in phenotypic switching	5
A second-order stability analysis for the continuous model of indirect reciprocity	5
Effects of extracellular potassium on calcium handling and force generation in a model of excitation-contraction coupling in skeletal muscle	5
Impact of noise on the regulation of intracellular transport of intermediate filaments	5
Tag-based spite with correlated interactions	5
Mathematical modeling of cerebral capillary blood flow heterogeneity and its effect on brain tissue oxygen levels	5
Comparison between best-response dynamics and replicator dynamics in a social-ecological model of lake eutrophication	5
Antibody protection from SARS-CoV-2 respiratory tract exposure and infection	5
Maintaining the proliferative cell niche in multicellular models of epithelia	5
Coexistence of Hopf-born rotation and heteroclinic cycling in a time-delayed three-gene auto-regulated and mutually-repressed core genetic regulation network	5
Mathematical model for the dynamics of Savanna ecosystem considering fire disturbances	5
A phenomenological-based semi-physical model of the kidneys and its role in glucose metabolism	5
The effect of bottleneck size on evolution in nested Darwinian populations	5
Theoretical evidence of osteoblast self-inhibition after activation of the genetic regulatory network controlling mineralization	5
The asymmetric Hawk-Dove game with costs measured as time lost	5
Analysis of serological surveys of antibodies to SARS-CoV-2 in the United States to estimate parameters needed for transmission modeling and to evaluate and improve the accuracy of predictions	5
A process-based, stage-structured model of potato cyst nematode population dynamics: Effects of temperature and resistance	5