Journal of Theoretical Biology

Article	Citations
Spatio-temporal model of combining ADT and chemotherapy with senolytic treatment in metastatic prostate cancer	113
Age-dependence of food allergy due to decreased supply of naïve T cells	59
A mathematical model of microglia glucose metabolism and lactylation with positive feedback	58
The impact of codon choice on translation process in Saccharomyces cerevisiae: folding class, protein function and secondary structure	44
The effectiveness of various control strategies: An insight from a comparison modelling study	43
Trade-off between climatic and human population impacts on Aedes aegypti life history shapes its geographic distribution	40
Deciphering circulating tumor cells binding in a microfluidic system thanks to a parameterized mathematical model	37
Editorial Board	36
A coupled neural field model for the standard consolidation theory	34
Editorial Board	34
Editorial Board	32
Editorial Board	29
The eco-evolutionary modelling of populations and their traits using a measure of trait differentiation	29
Editorial Board	28
Using geometry to rank evenness measures: Towards a deeper understanding of divergence	28
Editorial Board	28
A foraging ocean sunfish and the ‘nearest neighbor’ problem	27
A coupled model for the dynamics of gas exchanges in the human lung with Haldane and Bohr’s effects	27
Evolution of spite in an n-player game with an opting-out option	27
Editorial Board	23
Editorial Board	23
Multi-scale model of lumen formation via inverse membrane blebbing mechanism during sprouting angiogenesis process	22
Tumour growth control: analysis of alternative approaches	21
Editorial Board	19
Effect of permeability on the initiation of Atherosclerosis modeled as an inflammatory process	19

Modeling the response of homogeneous and heterogeneous cerebral capillary networks to local changes in vessel diameters	18
Editorial Board	18
Optimal foraging strategies for mutually avoiding competitors	18
Editorial Board	17
Editorial Board	17
Downstream resource leakage a necessary condition for the stress-gradient hypothesis in processing chain commensalisms	17
Modeling the influence of cell–cell contact and TGF-β signaling on the epithelial mesenchymal transition in MCF7 breast carcinoma cells	17
Editorial Board	17
Modeling microtubule dynamic instability: Microtubule growth, shortening and pause	17
Editorial Board	16
Application of a novel mathematical model to identify intermediate hosts of SARS-CoV-2	16
On-off intermittency and irruptions in host-parasitoid dynamics	16
A new real-time analog circuit of Ca2+ Li-Rinzel astrocyte model based on analytical method	16
The origin of the genetic code and origin of ideas	16
Editorial Board	16
Optimal vaccination strategies for imperfect vaccines and variable host susceptibility	15
In Remembrance: Professor Lewis Wolpert	15
Editorial Board	15
Exponential dynamics of DNA methylation with age	15
A multi-strain epidemic model for COVID-19 with infected and asymptomatic cases: Application to French data	14
A 3D mathematical model of coupled stem cell-nutrient dynamics in myocardial regeneration therapy	14
Quantifying robustness of the gap gene network	14
The heterogeneous mixing model of COVID-19 with interventions	14
The role of alcohol consumption on acetaminophen induced liver injury: Implications from a mathematical model	13
Prevalence estimation and optimal classification methods to account for time dependence in antibody levels	13
Molecular mechanism of interaction between kinesin motors affecting their residence times on microtubule lattice and end	13
A broader context for understanding amino acid alphabet optimality	13
Nonlinear thermodynamics of biological signal transduction for predicting conservation of entropy production rate	13
The voltage-depolarization performance vs the free energy cost of a single nACh receptor	13
Patterns of reported infection and reinfection of SARS-CoV-2 in England	13
Disentangling the growth curve of microbial culture	13
Nonlinear multi-objective flux balance analysis of the Warburg Effect	13
The circulation stage of the metastatic cascade: A mathematical description and its clinical implications	13
The impact of contact-network structure on important epidemiological quantities of infectious disease transmission and the identification of the extremes	12
Design, optimization, and inference of biphasic decay of infectious virus particles	12
Multisolitons-like patterns in a one-dimensional MARCKS protein cyclic model	12
From Bayes to Darwin: Evolutionary search as an exaptation from sampling-based Bayesian inference	12
Patient-specific parameter estimation: Coupling a heart model and experimental data	12
Replicator dynamics for the game theoretic selection models based on state	12
Comparative analysis of kinetic realizations of insulin signaling	11
Sensitivity assessment of optimal control strategies and cost-effectiveness analysis of a novel Candida Auris environmental transmission model in intensive care facilities	11
Mathematical modelling of the hematopoietic stem cell-niche system: Clonal dominance based on stem cell fitness.	11
Investigation of phase synchronization in functional brain networks of children with ADHD using nonlinear recurrence measure	11
Workplace absenteeism due to COVID-19 and influenza across Canada: A mathematical model	11
Linking the disease transmission to information dissemination dynamics: An insight from a multi-scale model study	11
Intelligent phenotype-detection and gene expression profile generation with generative adversarial networks	11
Sterile males and females can synergistically suppress wild pests targeted by sterile insect technique	11
Sharp boundary formation and invasion between spatially adjacent periodical cicada broods	11
Indirect reciprocity with abductive reasoning	11
Poacher-population dynamics when legal trade of naturally deceased organisms funds anti-poaching enforcement	10

Cooperative success in epithelial public goods games	10
Global analysis of a cancer model with drug resistance due to Lamarckian induction and microvesicle transfer	10
Modelling uniaxial non-uniform yeast colony growth: Comparing an agent-based model and continuum approximations	10
A dynamical model for the origin of anisogamy	10
Predator avoidance and foraging for food shape synchrony and response to perturbations in trophic metacommunities	10
Quasi-species evolution maximizes genotypic reproductive value (not fitness or flatness)	10
Modelling strategies to organize healthcare workforce during pandemics: Application to COVID-19	10
How do biases in sex ratio and disease characteristics affect the spread of sexually transmitted infections?	9
Second compartment widens plasmid invasion conditions: Two-compartment pair-formation model of conjugation in the gut	9
Evolution of enzyme levels in metabolic pathways: A theoretical approach. Part 1	9
Evolutionary coexistence in a metacommunity: Competition-colonization trade-off, ownership effects, environmental fluctuations	9
Social context modulates scale-free movements in a social insect	9
Comment on the article “Spatially-extended nucleation-aggregation-fragmentation models for the dynamics of prion-like neurodegenerative protein-spreading in the brain and its connectome 486 (2020) 110	9
Shrinkage in serial intervals across transmission generations of COVID-19	9
Two linked loci under mutation-selection balance and Muller’s ratchet	9
A mechanistic model captures livestock trading, disease dynamics, and compensatory behaviour in response to control measures	9
A mathematical model to evaluate the role of memory B and T cells in heterologous secondary dengue infection	9
A time series representation of protein sequences for similarity comparison	9
Parasite evolution in an age-structured population	9
Differential impacts of contact tracing and lockdowns on outbreak size in COVID-19 model applied to China	9
First passage time properties of miRNA-mediated protein translation	9
Cortical depth-dependent modeling of visual hemodynamic responses	9
Peripheral structures in unlabelled trees and the accumulation of subgenomes in the evolution of polyploids	9
The sensitivity of complex dynamic food webs to the loss of top omnivores	9
Phenotype-structured model of intra-clonal heterogeneity and drug resistance in multiple myeloma	8
Weak selection and stochastic evolutionary stability in a stochastic replicator dynamics	8
A kin-selection model of fairness in heterogeneous populations	8
Vaccine hesitancy promotes emergence of new SARS-CoV-2 variants	8
Understanding noise in cell signalling in the prospect of drug-targets	8
Evolutionary dynamics of zero-determinant strategies in repeated multiplayer games	8
Social relationship adjustments within the same sex promote marital bliss	8
Multi-timescale analysis of midbrain dopamine neuronal firing activities	8
Optimal dormancy strategies in fluctuating environments given delays in phenotypic switching	8
Epidemic dynamics with time-varying transmission risk reveal the role of disease stage-dependent infectiousness	8
Evolution of mixed mating: Effects of among-parent variation in early-acting inbreeding depression coupled with overproduction of ovules	8
LRBmat: A novel gut microbial interaction and individual heterogeneity inference method for colorectal cancer	8
T cell therapy against cancer: A predictive diffuse-interface mathematical model informed by pre-clinical studies	8
Diffusion approximations in population genetics and the rate of Muller’s ratchet	8
Assessing the impact of insecticide-treated nets in the face of insecticide resistance on malaria control	8
Theoretical evidence of osteoblast self-inhibition after activation of the genetic regulatory network controlling mineralization	8
Internal phosphorus recycling promotes rich and complex dynamics in an algae-phosphorus model: Implications for eutrophication management	8
A framework for relating natural movement to length and quality of life in human and non-human animals	8
Spatial metapopulation dynamics with local and global colonization	8
Evolution of pathogens with cross-immunity in response to healthcare interventions	8
Cell-center-based model for simulating three-dimensional monolayer tissue deformation	8
Pulsatile signaling of bistable switches reveal the distinct nature of pulse processing by mutual activation and mutual inhibition loop	8
Epidemic dynamics on metapopulation networks with node2vec mobility	8
Cell size homeostasis under the circadian regulation of cell division in cyanobacteria	8
Topological early warning signals: Quantifying varying routes to extinction in a spatially distributed population model	8
Critical observation of WHO recommended multidrug therapy on the disease leprosy through mathematical study	8
Human movement avoidance decisions during Coronavirus disease 2019 in Japan	7
Resource budget model with Duffing oscillator for dynamics of synchronized biennial-bearing olives in the Levant	7
A Tale of two receptors	7
Perceived risk induced multiscale model: Coupled within-host and between-host dynamics and behavioral dynamics	7
Evolutionary emergence of plant and pollinator polymorphisms in consumer-resource mutualisms	7
Statistical inference and neural network training based on stochastic difference model for air pollution and associated disease transmission	7
A mathematical model of competition between fiber and mucin degraders in the gut provides a possible explanation for mucus thinning	7
The evolutionary dynamics of hyperparasites	7
Investigating the synergistic effects of immunotherapy and normalization treatment in modulating tumor microenvironment and enhancing treatment efficacy	7
A spatially distributed model of brain metabolism highlights the role of diffusion in brain energy metabolism	7
Temperature variability regulates the interactive effects of warming and pharmaceutical on aquatic ecosystem dynamics	7
Corrigendum to “From the Price equation to the selection gradient in class-structured populations: A quasi-equilibrium route” [J. Theor. Biol. 447 (2018) 178–189]	7
Optimisation of gene expression noise for cellular persistence against lethal events	7
Agelessness is possible under the disposable soma theory but system complexity makes it unlikely	7
An adaptive numerical method for multi-cellular simulations of tissue development and maintenance	7
A resource-based mechanistic framework for castration-resistant prostate cancer (CRPC)	7
An integrated vertex model of the mesoderm invagination during the embryonic development of Drosophila	7
On the limits to invasion prediction using coexistence outcomes	7
Population dynamics and games of variable size	7
Discrete-state models identify pathway specific B cell states across diseases and infections at single-cell resolution	7
Subsistence of sib altruism in different mating systems and Haldane’s arithmetic	7
Learning to hunt: A data-driven stochastic feedback control model of predator–prey interactions	7
Optimal resource allocation in micro-organisms under periodic nutrient fluctuations	7
Data-driven mathematical modeling of sleep consolidation in early childhood	7
Lewy body radius growth: The hypothesis of the cube root of time dependency	7
Using registry data to identify individual dairy cows with abnormal patterns in routinely recorded somatic cell counts	7
The importance of vaccinated individuals to population-level evolution of pathogens	7
A mathematical model for nutrient-limited uniaxial growth of a compressible tissue	7
Corrigendum to “Stationary moments, diffusion limits, and extinction times for logistic growth with random catastrophes” [J. Theor. Biol. 454 (2018) 154–163]	6
How optimal allocation of limited testing capacity changes epidemic dynamics	6

MMM – The molecular model of memory	6
Temporal signaling, population control, and information processing through chromatin-mediated gene regulation	6
Modeling phyllotaxis: From the inhibition potential to the real plant	6
Possible regulatory mechanisms of typical and atypical absence seizures through an equivalent projection from the subthalamic nucleus to the cortex: Evidence in a computational model	6
Computational model of the cancer necrotic core formation in a tumor-on-a-chip device	6
Matrix adhesion and remodeling diversifies modes of cancer invasion across spatial scales	6
Individual specialization and generalization in predator-prey dynamics: The determinant role of predation efficiency and prey reproductive rates	6
Network models to evaluate vaccine strategies towards herd immunity in COVID-19	6
PULSAR Effect: Revealing potential synergies in combined radiation therapy and immunotherapy via differential equations	6
Identifiability and inference of phylogenetic birth–death models	6
Application of growth rate from kinetic model to calculate stochastic growth of a bacteria population at low contamination level	6
Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold	6
Mathematical models of long term evolution of blue whale song types’ frequencies	6
Chaos in memory function of sleep: A nonlinear dynamical analysis in thalamocortical study	6
Counting unique molecular identifiers in sequencing using a multi-type branching process with immigration	6
Passive electrolocation in terrestrial arthropods: Theoretical modelling of location detection	6
Coexistence of Hopf-born rotation and heteroclinic cycling in a time-delayed three-gene auto-regulated and mutually-repressed core genetic regulation network	6
A Josephson junction-coupled neuron with double capacitive membranes	6
A hybrid approach to study and forecast climate-sensitive norovirus infections in the USA	6
Evolution of cooperation in social dilemmas with assortment in finite populations	6
The eco-evolutionary dynamics of two strategic species: From the predator-prey to the innocent-spreader rumor model	6
Emergence of broad cytosolic Ca2+ oscillations in the absence of CRAC channels: A model for CRAC-mediated negative feedback on PLC and Ca2+ oscillations through PKC	6
Phase synchronization analysis of EEG functional connectivity in Parkinson’s disease	6
Resource allocation in tragedy of the commons game in plants for belowground competition	6
An investigation of the effect of brain atrophy on brain injury in multiple sclerosis	6
Mathematical modeling of calcium homeostasis in female rats: An analysis of sex differences and maternal adaptations	6
An RNA-based theory of natural universal computation	6
Redundancy-selection trade-off in phenotype-structured populations	5
Co-adaptive behavior of interacting populations in a habitat selection game significantly impacts ecosystem functions	5
Editorial Board	5
Dynamics of a ratio-dependent population model for Green Sea Turtle with age structure	5
Spatial distribution of gut microbes along the intestinal duct	5
Editorial Board	5
Modeling long COVID dynamics: Impact of underlying health conditions	5
Exploring COVID-19 transmission patterns and key factors during epidemics caused by three major strains in Asia	5
Modelling aspects of consciousness: A topological perspective	5
Computational modeling implicates protein scaffolding in p38 regulation of Akt	5
Network-based uncertainty quantification for mathematical models in epidemiology	5
Tumor microenvironment as a metapopulation model: The effects of angiogenesis, emigration and treatment modalities	5
Optimal heat transport induced by magnetic nanoparticle delivery in vascularised tumours	5
The role of mound functions and local environment in the diversity of termite mound structures	5
The role of RdCVFL in a mathematical model of photoreceptor interactions	5
Editorial Board	5
Fluid dynamic simulation suggests hopping locomotion in the Ordovician trilobite Placoparia	5
Modeling the outbreak and control of African swine fever virus in large-scale pig farms	5
A mechanistic systems pharmacology modeling platform to investigate the effect of PD-L1 expression heterogeneity and dynamics on the efficacy of PD-1 and PD-L1 blocking antibodies in cancer	5
Unraveling the origin of glucose mediated disparate proliferation dynamics of cancer stem cells	5
Editorial Board	5
Lockhart with a twist: Modelling cellulose microfibril deposition and reorientation reveals twisting plant cell growth mechanisms	5
Editorial Board	5
Antibody protection from SARS-CoV-2 respiratory tract exposure and infection	5
Editorial Board	5
A model for the regulation of apoptosis intrinsic pathway: The potential role of the transcriptional regulator E2F in the point of no return	5
Editorial Board	5
Powered-gliding/climbing flight	5
Corrigendum to “Multiscale numerical workflow describing microalgae motion and light pattern incidence towards population growth in a photobioreactor” [J. Theoret. Biol. 498 (2020) 110293]	5
On the misuse of evolutionary theory to bolster the ‘scientific’ case for intelligent design: A cautionary note	5
Competition with abundance-dependent fitness and the dynamics of heterogeneous populations in fluctuating environment	5
Phenomenological-based model of glucose transport from liver to abdominal subcutaneous adipose tissue	5
Mathematical modeling of the eyespots in butterfly wings	5
Temperate and chronic virus competition leads to low lysogen frequency	5
Olfactory encoding within the insect antennal lobe: The emergence and role of higher order temporal correlations in the dynamics of antennal lobe spiking activity	5
The novel Ideal Symmetry Genetic Code table – Common purine-pyrimidine symmetry net for all RNA and DNA species	5
A geometric approach to the evolution of altruism	5
Editorial Board	5
Editorial Board	5
A hybrid discrete-continuum model of immune responses to SARS-CoV-2 infection in the lung alveolar region, with a focus on interferon induced innate response	5
Editorial Board	5
Adaptive network modeling of social distancing interventions	5
Channel noise induced stochastic effect of Hodgkin–Huxley neurons in a real classification task	5
Structural patterns of SARS-CoV-2 variants of concern (alpha, beta, gamma, delta) spike protein are influenced by variant-specific amino acid mutations: A computational study with implications on vira	5
Assessing dengue risk globally using non-Markovian models	5
A multiscale continuum model of the vertebrate outer retina: The temporal dynamics of background-induced flicker enhancement	5
Editorial Board	5
Pólya-splitting distributions as stationary solutions of multivariate birth–death processes under extended neutral theory	4
Long-term effects of non-pharmaceutical interventions on total disease burden in parsimonious epidemiological models	4
Selection by differential survival among marine animals in the Phanerozoic	4
Optimal control of combination immunotherapy for a virtual murine cohort in a glioblastoma-immune dynamics model	4
An approximate solution of the SLIP model under the regime of linear angular dynamics during stance and the stability of symmetric periodic running gaits	4
Dynamics of cell-type transition mediated by epigenetic modifications	4
Separation of evolutionary timescales in coevolving species	4
Stoichiometric microplastics models in natural and laboratory environments	4
Modeling the synergistic properties of drugs in hormonal treatment for prostate cancer	4
Inferring stochastic group interactions within structured populations via coupled autoregression	4
Genomic compliance with Chargaff’s second parity rule may have originated non-adaptively, but stem-loops now function adaptively	4
Convergence of reputations under indirect reciprocity	4
Cellular communication among smooth muscle cells: The role of membrane potential via connexins	4
Identifying critical regulatory interactions in cell fate decision and transition by systematic perturbation analysis	4
Kinetics and regulation of coagulation factor X activation by intrinsic tenase on phospholipid membranes	4
Modeling the heterogeneous apoptotic response of caspase-mediated signaling in tumor cells	4
SIRS epidemics with individual heterogeneity of immunity waning	4
Peripheral straightness leads to shape diversification during formations of entire leaves	4
Excitable dynamics in a molecularly-explicit model of cell motility: Mixed-mode oscillations and beyond	4
A Boolean network model of the double-strand break repair pathway choice	4
A mathematical framework for the emergence of winners and losers in cell competition	4