Journal of Theoretical Biology

Article	Citations
Estimating the reproductive number R0 of SARS-CoV-2 in the United States and eight European countries and implications for vaccination	103
Predicting the second wave of COVID-19 in Washtenaw County, MI	57
Predicting the number of reported and unreported cases for the COVID-19 epidemics in China, South Korea, Italy, France, Germany and United Kingdom	57
Optimal strategies for social distancing and testing to control COVID-19	52
Optimal strategies for vaccination and social distancing in a game-theoretic epidemiologic model	44
Mechanistic modelling of the large-scale Lassa fever epidemics in Nigeria from 2016 to 2019	42
Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold	42
Impact of media reports on the early spread of COVID-19 epidemic	38
A novel COVID-19 epidemiological model with explicit susceptible and asymptomatic isolation compartments reveals unexpected consequences of timing social distancing	37
Parameter identifiability and model selection for sigmoid population growth models	36
How range residency and long-range perception change encounter rates	35
Impact of intervention on the spread of COVID-19 in India: A model based study	33
Joint impacts of media, vaccination and treatment on an epidemic Filippov model with application to COVID-19	32
Modeling of the early stage of atherosclerosis with emphasis on the regulation of the endothelial permeability	31
Understanding the role of phenotypic switching in cancer drug resistance	30
Effects of latency and age structure on the dynamics and containment of COVID-19	29
Data-driven analysis of a mechanistic model of CAR T cell signaling predicts effects of cell-to-cell heterogeneity	28
Network models to evaluate vaccine strategies towards herd immunity in COVID-19	28
COVID-19 endgame: From pandemic to endemic? Vaccination, reopening and evolution in low- and high-vaccinated populations	28
Modelling the effects of the contaminated environments on tuberculosis in Jiangsu, China	25
A behavioural modelling approach to assess the impact of COVID-19 vaccine hesitancy	25
A multi-strain epidemic model for COVID-19 with infected and asymptomatic cases: Application to French data	25
Dynamics of a stage-structured predator-prey model: cost and benefit of fear-induced group defense	25
How best can finite-time social distancing reduce epidemic final size?	24
Modeling the waning and boosting of immunity from infection or vaccination	24

Governance of risky public goods under graduated punishment	24
Model-based data analysis of tissue growth in thin 3D printed scaffolds	23
Rapid, large-scale, and effective detection of COVID-19 via non-adaptive testing	23
Predicting protein-peptide binding sites with a deep convolutional neural network	22
An ecological framework for the analysis of prebiotic chemical reaction networks	22
The total path length hydraulic resistance according to known anatomical patterns: What is the shape of the root-to-leaf tension gradient along the plant longitudinal axis?	21
Modelling COVID-19 dynamics and potential for herd immunity by vaccination in Austria, Luxembourg and Sweden	21
Human choice to self-isolate in the face of the COVID-19 pandemic: A game dynamic modelling approach	21
Rolling-circle and strand-displacement mechanisms for non-enzymatic RNA replication at the time of the origin of life	21
Photoinhibition in optically thick samples: Effects of light attenuation on chlorophyll fluorescence-based parameters	21
Designing combination therapies using multiple optimal controls	20
Pattern formation in a coupled membrane-bulk reaction-diffusion model for intracellular polarization and oscillations	19
Mathematical investigation of innate immune responses to lung cancer: The role of macrophages with mixed phenotypes	19
Eco-evolutionary dynamics of cooperation in the presence of policing	19
Systems biology of ferroptosis: A modeling approach	18
Matrix adhesion and remodeling diversifies modes of cancer invasion across spatial scales	18
Computational predictive approaches for interaction and structure of aptamers	18
True epidemic growth construction through harmonic analysis	18
Fixation properties of rock-paper-scissors games in fluctuating populations	18
Determinants of optimal insecticide resistance management strategies	17
Optimal control of pattern formations for an SIR reaction–diffusion epidemic model	17
Regulatory dynamic enzyme-cost flux balance analysis: A unifying framework for constraint-based modeling	16
A game-theoretical analysis of poliomyelitis vaccination	16
Physically-plausible modelling of biomolecular systems: A simplified, energy-based model of the mitochondrial electron transport chain	16
Cost-efficiency analysis of voluntary vaccination against n-serovar diseases using antibody-dependent enhancement: A game approach	16
Symbiotic behaviour in the public goods game with altruistic punishment	15
Modelling strategies to organize healthcare workforce during pandemics: Application to COVID-19	15
A virtual host model of Mycobacterium tuberculosis infection identifies early immune events as predictive of infection outcomes	14
Modelling within-host macrophage dynamics in influenza virus infection	14
Estimating local outbreak risks and the effects of non-pharmaceutical interventions in age-structured populations: SARS-CoV-2 as a case study	14
When to lift the lockdown in Hubei province during COVID-19 epidemic? An insight from a patch model and multiple source data	14
Transmission dynamics of COVID-19 in Nepal: Mathematical model uncovering effective controls	14
Control of tumor growth distributions through kinetic methods	14
Structure-function relationships in the feto-placental circulation from in silico interpretation of micro-CT vascular structures	13
A model for establishment, maintenance and reactivation of the immune response after vaccination against Ebola virus	13
Dynamics of social interactions, in the flow of information and disease spreading in social insects colonies: Effects of environmental events and spatial heterogeneity	13
Heterogeneity in susceptibility dictates the order of epidemic models	13
Evolution of conditional and unconditional commitment	13
Dynamics of a birth–death process based on combinatorial innovation	13
A type IV functional response with different shapes in a predator–prey model	13
Mathematical modeling of atherogenesis: Atheroprotective role of HDL	13
Distinguishing viruses responsible for influenza-like illness	12
Periodic orbit can be evolutionarily stable: Case Study of discrete replicator dynamics	12
Modeling the outbreak and control of African swine fever virus in large-scale pig farms	12
The probability distribution of the reconstructed phylogenetic tree with occurrence data	12
The effect of viral plasticity on the persistence of host-virus systems	12
Dynamics of a nutrient-phytoplankton model with random phytoplankton mortality	12
Dynamics of kinesin motor proteins under longitudinal and sideways loads	12
A practical guide to pseudo-marginal methods for computational inference in systems biology	12
Locally temperature - driven mathematical model of West Nile virus spread in Germany	12

An RNA-based theory of natural universal computation	12
Design of an engineered ACE2 as a novel therapeutics against COVID-19	12
A mathematical model to study the impact of intra-tumour heterogeneity on anti-tumour CD8+ T cell immune response	12
The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data	12
Differential impacts of contact tracing and lockdowns on outbreak size in COVID-19 model applied to China	12
Non-tight and tight chemomechanical couplings of biomolecular motors under hindering loads	12
Modelling female physiology from head to Toe: Impact of sex hormones, menstrual cycle, and pregnancy	11
Ecological and evolutionary consequences of predator-prey role reversal: Allee effect and catastrophic predator extinction	11
Dynamics of sensory integration of olfactory and mechanical stimuli within the response patterns of moth antennal lobe neurons	11
The components of directional and disruptive selection in heterogeneous group-structured populations	11
A simple correction for COVID-19 sampling bias	11
An ensemble mixed effects model of sleep loss and performance	11
Association extraction from biomedical literature based on representation and transfer learning	11
Internal phosphorus recycling promotes rich and complex dynamics in an algae-phosphorus model: Implications for eutrophication management	11
Free ticket, discount ticket or intermediate of the best of two worlds – Which subsidy policy is socially optimal to suppress the disease spreading?	11
Role of vascular smooth muscle cell phenotypic switching in plaque progression: A hybrid modeling study	10
Modelling of energy-driven switch for glucagon and insulin secretion	10
Multi-method global sensitivity analysis of mathematical models	10
Cooperative predation on mutualistic prey communities	10
Co-adaptive behavior of interacting populations in a habitat selection game significantly impacts ecosystem functions	10
Cancer-induced immunosuppression can enable effectiveness of immunotherapy through bistability generation: A mathematical and computational examination	10
Analysis of individual strategies for artificial and natural immunity with imperfectness and durability of protection	10
Statistical approach for parameter identification by Turing patterns	10
Ascertainment rate of SARS-CoV-2 infections from healthcare and community testing in the UK	10
Enhanced species coexistence in Lotka-Volterra competition models due to nonlocal interactions	10
Linking the disease transmission to information dissemination dynamics: An insight from a multi-scale model study	10
Emergence of ribozyme and tRNA-like structures from mineral-rich muddy pools on prebiotic earth	10
Dominance, sharing, and assessment in an iterated Hawk–Dove game	10
An extended stochastic Allee model with harvesting and the risk of extinction of the herring population	10
Evolution of state-dependent strategies in stochastic games	10
Inference on the structure of gene regulatory networks	10
A general mathematical framework for understanding the behavior of heterogeneous stem cell regeneration	9
Dual mechanisms of Ca2+ oscillations in hepatocytes	9
A generic arboviral model framework for exploring trade-offs between vector control and environmental concerns	9
Mathematical modelling of the hematopoietic stem cell-niche system: Clonal dominance based on stem cell fitness.	9
Habitual sleep duration affects recovery from acute sleep deprivation: A modeling study	9
A model of COVID-19 propagation based on a gamma subordinated negative binomial branching process	9
Phenotype- and patient-specific modelling in asthma: Bronchial thermoplasty and uncertainty quantification	9
A direct comparison of methods for assessing the threat from emerging infectious diseases in seasonally varying environments	9
The Moon illusion explained by the projective consciousness model	9
Towards the virtual tumor for optimizing radiotherapy treatments of hypoxic tumors: A novel model of heterogeneous tissue vasculature and oxygenation	9
A white noise approach to evolutionary ecology	9
Hypnozoite dynamics for Plasmodium vivax malaria: The epidemiological effects of radical cure	9
Temporal signaling, population control, and information processing through chromatin-mediated gene regulation	9
Best response dynamics improve sustainability and equity outcomes in common-pool resources problems, compared to imitation dynamics	9
A size and space structured model describing interactions of tumor cells with immune cells reveals cancer persistent equilibrium states in tumorigenesis	8
A two-sex model of human papillomavirus infection: Vaccination strategies and a case study	8
A unified mathematical model of thyroid hormone regulation and implication for personalized treatment of thyroid disorders	8
Autoimmune diseases initiated by pathogen infection: Mathematical modeling	8
A theoretical analysis of the scale separation in a model to predict solid tumour growth	8
Rules of nature’s Formula Run: Muscle mechanics during late stance is the key to explaining maximum running speed	8
Effective nonlocal kernels on reaction–diffusion networks	8
Individual specialization and generalization in predator-prey dynamics: The determinant role of predation efficiency and prey reproductive rates	8
How the resource supply distribution structures competitive communities	8
Bifurcation and sensitivity analysis reveal key drivers of multistability in a model of macrophage polarization	8
Projecting COVID-19 cases and hospital burden in Ohio	8
A mechanochemical model for rho GTPase mediated cell polarization	8
When optimal foragers meet in a game theoretical conflict: A model of kleptoparasitism	8
Mathematical modeling of tumor-immune system interactions: the effect of rituximab on breast cancer immune response	8
Hamilton’s rule, gradual evolution, and the optimal (feedback) control of phenotypically plastic traits	8
Modeling the effect of immunotherapies on human castration-resistant prostate cancer	8
A Monte Carlo method to estimate cell population heterogeneity from cell snapshot data	8
OSIRIS: A model for integrating the effects of multiple stressors on marine ecosystems	8
Modelling cell guidance and curvature control in evolving biological tissues	8
Competitive effects in bacterial mRNA decay	8
The Singaporean model in public goods dilemmas with benevolent leaders and bribery	8
Predator avoidance and foraging for food shape synchrony and response to perturbations in trophic metacommunities	8
Modeling HIV multiple infection	7
How optimal allocation of limited testing capacity changes epidemic dynamics	7
The study of myocardial ischemia-reperfusion treatment through computational modelling	7
Reconstructing the population dynamics of foreign residents in Japan to estimate the prevalence of infection with Mycobacterium tuberculosis	7
The role of syncytia during viral infections	7
Using statistical methods to model the fine-tuning of molecular machines and systems	7
Population dynamic regulators in an empirical predator-prey system	7
Modelling fungal hypha tip growth via viscous sheet approximation	7
Modeling continuous glucose monitoring with fractional differential equations subject to shocks	7
From insulin to Akt: Time delays and dominant processes	7
Reliable and efficient parameter estimation using approximate continuum limit descriptions of stochastic models	7
Control analysis of electrical stimulation for epilepsy waveforms in a thalamocortical network	7
Optimal heat transport induced by magnetic nanoparticle delivery in vascularised tumours	7

Chaos in memory function of sleep: A nonlinear dynamical analysis in thalamocortical study	7
Imaging the living brain: An argument for ruthless reductionism from olfactory neurobiology	7
Evolutionary dynamics of zero-determinant strategies in repeated multiplayer games	7
Competition delays multi-drug resistance evolution during combination therapy	7
Delay-driven oscillations via Axin2 feedback in the Wnt/β-catenin signalling	7
Density dependent Resource Budget Model for alternate bearing	7
Quantifying nutrient throughput and DOM production by algae in continuous culture	7
Preservation of the value of rice paddy fields: Investigating how to prevent farmers from abandoning the fields by means of evolutionary game theory	7
Modeling dynamics of cancer radiovirotherapy	7
Susceptibility to organophosphates pesticides and the development of infectious-contagious respiratory diseases	7
Eco-evolutionary cyclic dominance among predators, prey, and parasites	7
Bidirectional, unlike unidirectional transport, allows transporting axonal cargos against their concentration gradient	7
Inflected wings in flight: Uniform flow of stresses makes strong and light wings for stable flight	7
Identifying and characterising the impact of excitability in a mathematical model of tumour-immune interactions	7
The effect of seasonal strength and abruptness on predator–prey dynamics	7
The role of alcohol consumption on acetaminophen induced liver injury: Implications from a mathematical model	7
The effectiveness of various control strategies: An insight from a comparison modelling study	7
Co-inoculation with arbuscular mycorrhizal fungi differing in carbon sink strength induces a synergistic effect in plant growth	7
A broader context for understanding amino acid alphabet optimality	7
A novel 3D atomistic-continuum cancer invasion model: In silico simulations of an in vitro organotypic invasion assay	7
Spatio-temporal modelling of phenotypic heterogeneity in tumour tissues and its impact on radiotherapy treatment	7
Spatiotemporal pattern recognition and dynamical analysis of COVID-19 in Shanghai, China	7
Identification of potential therapeutic targets in Neisseria gonorrhoeae by an in-silico approach	7
Deciphering the dynamics of lamellipodium in a fish keratocytes model	7
Separate seasons of infection and reproduction can lead to multi-year population cycles	7
The mechanism of pulsed electric field (PEF) targeting location on the spatial conformation of pine nut peptide	7
The lodging of crops by tornadoes	7
The role of RdCVFL in a mathematical model of photoreceptor interactions	7
The ecology of cancer differentiation therapy	7
Rule-based epidemic models	6
Memory-driven movement model for periodic migrations	6
Projecting the COVID-19 immune landscape in Japan in the presence of waning immunity and booster vaccination	6
A quantitative method to project the probability of the end of an epidemic: Application to the COVID-19 outbreak in Wuhan, 2020	6
Modeling the synergistic properties of drugs in hormonal treatment for prostate cancer	6
Modelling cancer cell budding in-vitro as a self-organised, non-equilibrium growth process	6
The role of mound functions and local environment in the diversity of termite mound structures	6
A spatio-stochastic model for the spread of infectious diseases	6
The heterogeneous mixing model of COVID-19 with interventions	6
Uncovering potential interventions for pancreatic cancer patients via mathematical modeling	6
Anticipating future learning affects current control decisions: A comparison between passive and active adaptive management in an epidemiological setting	6
Disease dynamics and mean field models for clustered networks	6
Beyond the limits of circadian entrainment: Non-24-h sleep-wake disorder, shift work, and social jet lag	6
Aging-induced fragility of the immune system	6
The adaptive value of tandem communication in ants: Insights from an agent-based model	6
Temperature robustness in Arabidopsis circadian clock models is facilitated by repressive interactions, autoregulation, and three-node feedbacks	6
Schooling in habitats with aggregative sites: The case of tropical tuna and floating objects	6
Effect of feedback regulation on stem cell fractions in tissues and tumors: Understanding chemoresistance in cancer	6
The Role of Biofilms, Bacterial Phenotypes, and Innate Immune Response in Mycobacterium avium Colonization to Infection	6
Mathematical modeling of ventilator-induced lung inflammation	6
Are host control strategies effective to eradicate tick-borne diseases (TBD)?	6
A modeling platform for the lymphatic system	6
Modeling the subjective perspective of consciousness and its role in the control of behaviours	6
Signal transduction in cognitive systems: Origin and dynamics of the inverted-U/U dose-response relations	6
Designing experimental conditions to use the Lotka–Volterra model to infer tumor cell line interaction types	6
Low leg compliance permits grounded running at speeds where the inverted pendulum model gets airborne	6
Stochastic modelling of collective motor protein transport through a crossing of microtubules	6
On the Fourier transform of a quantitative trait: Implications for compressive sensing	6
Mathematical modelling of SARS-CoV-2 infection of human and animal host cells reveals differences in the infection rates and delays in viral particle production by infected cells	6
A novel nonlocal partial differential equation model of endothelial progenitor cell cluster formation during the early stages of vasculogenesis	6
Reducing courtship time promotes marital bliss: The Battle of the Sexes game revisited with costs measured as time lost	6
A multiscale multicellular spatiotemporal model of local influenza infection and immune response	6
Effect of the group size on the evolution of cooperation when an exit option is present	6
Hormonal regulation of ovarian follicle growth in humans: Model-based exploration of cycle variability and parameter sensitivities	6
Multiple cohort study of hospitalized SARS-CoV-2 in-host infection dynamics: Parameter estimates, identifiability, sensitivity and the eclipse phase profile	6
Fitness dependence preserves selection for recombination across diverse mixed mating strategies	6
Cost analysis of vaccination in tick-mouse transmission of Lyme disease	6
The role of advanced and late provisions in a co-evolutionary epidemic game model for assessing the social triple-dilemma aspect	6
Fluid dynamic simulation suggests hopping locomotion in the Ordovician trilobite Placoparia	6
Modelling somatic mutation accumulation and expansion in a long-lived tree with hierarchical modular architecture	6
Perivascular pumping in the mouse brain: Improved boundary conditions reconcile theory, simulation, and experiment	6
A DNA-structured mathematical model of cell-cycle progression in cyclic hypoxia	6
Patterns of reported infection and reinfection of SARS-CoV-2 in England	6
On deriving Murray’s law from constrained minimization of flow resistance	6
Optimal pollen stickiness to pollinators for maximizing paternal fitness: Increased number of recipient flowers or increased pollen deposition on recipient flowers?	6
Cerebrospinal fluid flow driven by arterial pulsations in axisymmetric perivascular spaces: Analogy with Taylor’s swimming sheet	6
Three-dimensional random walk models of individual animal movement and their application to trap counts modelling	6
Robust banded protoxylem pattern formation through microtubule-based directional ROP diffusion restriction	6
A phenomenological-based semi-physical model of the kidneys and its role in glucose metabolism	5
A simple stochastic model describing genomic evolution over time of GC content in microbial symbionts	5
Mathematical modelling of autoimmune myocarditis and the effects of immune checkpoint inhibitors	5
Animal intermittent locomotion: A null model for the probability of moving forward in bounded space	5
Effects of migration network configuration and migration synchrony on infection prevalence in geese	5
A hybrid discrete-continuum model of immune responses to SARS-CoV-2 infection in the lung alveolar region, with a focus on interferon induced innate response	5
Coexistence of Hopf-born rotation and heteroclinic cycling in a time-delayed three-gene auto-regulated and mutually-repressed core genetic regulation network	5
Modeling identifies variability in SARS-CoV-2 uptake and eclipse phase by infected cells as principal drivers of extreme variability in nasal viral load in the 48 h post infection	5
Homo-Oligomerisation in Signal Transduction: Dynamics, Homeostasis, Ultrasensitivity, Bistability	5
Lockhart with a twist: Modelling cellulose microfibril deposition and reorientation reveals twisting plant cell growth mechanisms	5
Maintenance of high inbreeding depression in selfing populations: Two-stage effect of early- and late-acting mutations	5
Sterile males and females can synergistically suppress wild pests targeted by sterile insect technique	5
First passage time properties of miRNA-mediated protein translation	5
A mathematical model of the multiple sclerosis plaque	5
Resource allocation in tragedy of the commons game in plants for belowground competition	5
Bovine mastitis and optimal disease management: Dynamic programming analysis	5
Aging a little: On the optimality of limited senescence in Escherichia coli	5
Parasite evolution in an age-structured population	5