OOIR: Observatory of International Research

Papers

(The H4-Index of Journal of Molecular Biology is 48. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
AlphaFold and Implications for Intrinsically Disordered Proteins	356
Structural insights into SARS-CoV-2 proteins	260
Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics	246
Experimental Evidence for Enhanced Receptor Binding by Rapidly Spreading SARS-CoV-2 Variants	182
Apoptosis, Pyroptosis, and Necroptosis—Oh My! The Many Ways a Cell Can Die	177
FunRich enables enrichment analysis of OMICs datasets	176
The AlphaFold Database of Protein Structures: A Biologist’s Guide	161
RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive	132
The Mechanism and Consequences of SARS-CoV-2 Spike-Mediated Fusion and Syncytia Formation	115
EFI-EST, EFI-GNT, and EFI-CGFP: Enzyme Function Initiative (EFI) Web Resource for Genomic Enzymology Tools	112
A Brief History of De Novo Protein Design: Minimal, Rational, and Computational	101
Crystal Structure of NLRP3 NACHT Domain With an Inhibitor Defines Mechanism of Inflammasome Inhibition	89
Structure and Function of Chromatin Remodelers	87
Liquid-Liquid Phase Separation of Tau Driven by Hydrophobic Interaction Facilitates Fibrillization of Tau	85
Molecular Mechanisms for Bacterial Potassium Homeostasis	82
Cation-π Interactions and their Functional Roles in Membrane Proteins	81
Sequence Determinants of the Aggregation of Proteins Within Condensates Generated by Liquid-liquid Phase Separation	79
The Paf1 Complex: A Keystone of Nuclear Regulation Operating at the Interface of Transcription and Chromatin	78
Synapsin Condensates Recruit alpha-Synuclein	75
Structural Modeling of the SARS-CoV-2 Spike/Human ACE2 Complex Interface can Identify High-Affinity Variants Associated with Increased Transmissibility	74
Mechanisms of Antiviral Immune Evasion of SARS-CoV-2	72
Molecular Strategies Underlying Porphyromonas gingivalis Virulence	68
The Groovy TMEM16 Family: Molecular Mechanisms of Lipid Scrambling and Ion Conduction	68
GeneCaRNA: A Comprehensive Gene-centric Database of Human Non-coding RNAs in the GeneCards Suite	67
The Mechanism of SARS-CoV-2 Nucleocapsid Protein Recognition by the Human 14-3-3 Proteins	67

Energy Landscapes of Protein Aggregation and Conformation Switching in Intrinsically Disordered Proteins	66
Subtle Influence of ACE2 Glycan Processing on SARS-CoV-2 Recognition	65
The Diverse Functions of Small Heat Shock Proteins in the Proteostasis Network	64
The Protein Folding Problem: The Role of Theory	61
Contributions of Histone Variants in Nucleosome Structure and Function	61
SARS-CoV-2 Fusion Peptide has a Greater Membrane Perturbating Effect than SARS-CoV with Highly Specific Dependence on Ca2+	61
The Persistent Question of Potassium Channel Permeation Mechanisms	60
On the Potential of Machine Learning to Examine the Relationship Between Sequence, Structure, Dynamics and Function of Intrinsically Disordered Proteins	60
Liquid-liquid Phase Separation of α-Synuclein: A New Mechanistic Insight for α-Synuclein Aggregation Associated with Parkinson's Disease Pathogenesis	59
Uncovering Non-random Binary Patterns Within Sequences of Intrinsically Disordered Proteins	58
Structural Basis of Drug Recognition by the Multidrug Transporter ABCG2	58
Molecular Mechanism of Nramp-Family Transition Metal Transport	57
The BioImage Archive – Building a Home for Life-Sciences Microscopy Data	57
On the molecular nature of large-pore channels	57
Regulatory B cells and T cell Regulation in Cancer	56
Pyroptosis-Induced Inflammation and Tissue Damage	56
Enzymatic Reactions inside Biological Condensates	56
Merging Established Mechanisms with New Insights: Condensates, Hubs, and the Regulation of RNA Polymerase II Transcription	54
iDRBP_MMC: Identifying DNA-Binding Proteins and RNA-Binding Proteins Based on Multi-Label Learning Model and Motif-Based Convolutional Neural Network	54
Towards Visual Proteomics at High Resolution	53
PANoptosis in Viral Infection: The Missing Puzzle Piece in the Cell Death Field	52
AlphaFold and the amyloid landscape	50
Mechanisms of Transcription Elongation Factor DSIF (Spt4–Spt5)	50
MLCPP 2.0: An Updated Cell-penetrating Peptides and Their Uptake Efficiency Predictor	48