OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Microscopy is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-09-01 to 2025-09-01.)

Article	Citations
	40
TOC ‐ Issue Information	31
	21
	18
TOC ‐ Issue Information	18
A practical guide to bioimaging research data management in core facilities	16
Self‐pressurised rapid freezing at arbitrary cryoprotectant concentrations	16
Study on line‐scan profile for a trapezoid line under varying sample temperatures through Monte–Carlo simulation	16
High‐speed 4‐dimensional scanning transmission electron microscopy using compressive sensing techniques	15
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	15
Innovating in a bioimaging core through instrument development	15
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	15
TOC ‐ Issue Information	14
A method for crystallographic mapping of an alpha‐beta titanium alloy with nanometre resolution using scanning precession electron diffraction and open‐source software libraries	14
Simple automation of SEM‐EDS spectral maps analysis with Python and the edxia framework	13
Application of STEM tomography to investigate smooth ER morphology under stress conditions	13
High‐pressure freezing of mechanically stretched cells	13
	12
ApoNecV: A macro for cell death type differentiation	12
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	12
	12
Poly‐L‐lysine/hyaluronan nanocarriers as a novel nanosystem for gene delivery	11
Seven‐layer analysis model of an optical waveguide excitation fluorescence microscopy	11
Stability of electron ptychography at low electron dose	11
Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking	11

Towards affordable biomedical imaging: Recent advances in low‐cost, high‐resolution optoacoustic microscopy	11
High‐accuracy, direct aberration determination using self‐attention‐armed deep convolutional neural networks	11
In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	10
Virtual dissection of Aedes aegypti mosquito using phase‐contrast synchrotron microtomography	10
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	10
Integrated opto‐mechanical cantilever sensor with a rib waveguide	10
	9
Challenges and advances in optical 3D mesoscale imaging	9
	9
Automated Euler number of the alveolar capillary network based on deep learning segmentation with verification by stereological methods	9
Repair effect of Centella asiatica (L.) extract on damaged HaCaT cells studied by atomic force microscopy	9
Use of Melinex film for flat embedding tissue sections in LR White	9
Subsurface phase imaging of tapping‐mode atomic force microscopy at phase resonance	9
	9
Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM	9
Multicamera simultaneous total internal reflection and interference reflection microscopy	8
Single‐shot differential phase contrast microscopy using ring‐shaped polarisation multiplexing illumination	8
Characterisation of bond between cement paste and steel fibres with different surface roughness using SEM	8
Microscopy at a glance: New poster article series exploring the intersection of art, science and imaging	8
Investigation of the interface of fungal mycelium composite building materials by means of low‐vacuum scanning electron microscopy	8
CellPhePy: A python implementation of the CellPhe toolkit for automated cell phenotyping from microscopy time‐lapse videos	8
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	8
Adsorption of PCE in alkali‐activated materials analysed by fluorescence microscopy	8
Development of a deep learning method for phase retrieval image enhancement in phase contrast microcomputed tomography	8
Subcellular localisation and identification of single atoms using quantitative scanning transmission electron microscopy	7
Flexible implementation of modulated localisation microscopy based on DMD	7
Morphological and structural analysis of iron‐rich porcelains excavated from the Jian kiln site of Song dynasty	7
Ptychography: A brief introduction	7
Material characteristics of historic scagliola interiors in Vienna: A view through the microscope	7
Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	7
	7
Traction force generation in Plasmodium sporozoites is modulated by a surface adhesin	7
Automatic detection of Kikuchi bands based on Radon transform and PPHT	7
Fluorescence microscopic investigation of PCE superplasticiser adsorption in calcined clay blended cement	7
A Python tool to determine the thickness of the hydrate layer around clinker grains using SEM‐BSE images	6
TOC ‐ Issue Information	6
Correction to “Image quality evaluation for FIB‐SEM images”	6
Unveiling the limits of precision in iterative MINFLUX	6
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	6
Quantitative analysis of human umbilical vein endothelial cell morphology and tubulogenesis	6
ToTEM: A software for fast TEM image simulation	6
TOC ‐ Issue Information	6
Corrigendum	6
Introduction to the Festschrift for Paul Walther	6
Automatic identification and quantification of surface nanoscale pore morphology in coals of different ranks based on AFM, SEM and LP‐N₂GA	6
	6
Correction to ‘Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live Zebrafish embryos’	6
Simple Python‐based methods for analysis and drift‐correction of STM images	6
Correlation steered scanning with spiral scanning path for AFM to correct image distortion with real‐time compensation	6
Microscopic investigation of the optical and morphological properties of iPP/TiO₂ nanocomposite fibres using computed tomography technique	5

TUNA‐EBSD‐CL correlative multi‐microscopy study, on the example of Cu(In,Ga)S₂ solar cell absorber	5
Characterisation and correction of polarisation effects in fluorescently labelled fibres	5
A case study of distress mechanism(s) in a concrete structure foundation in the saturated zone and above the saturated zone	5
TOC ‐ Issue Information	5
Primed conversion: The emerging player of precise and nontoxic photoconversion	5
Comparison of holotomographic microscopy and coherence‐controlled holographic microscopy	5
An automated slide scanning system for membrane filter imaging in diagnosis of urogenital schistosomiasis	5
Open‐source hardware‐ and software‐based cryomicroscopy system for investigation of phase transitions in cryobiological research	5
Response to Adler and Parmryd	5
An integrated optical waveguide micro‐cantilever system for chip‐based AFM	5
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	5
	4
Implications of gnomonic distortion on electron backscatter diffraction and transmission Kikuchi diffraction	4
TOC ‐ Issue Information	4
Detecting charge transfer at defects in 2D materials with electron ptychography	4
Comparative study on the Ru ware, Ru‐type ware of Qingliangsi kiln and celadon of Zhanggongxiang kiln	4
TOC ‐ Issue Information	4
Cryo‐SEM and large volume FIB‐SEM of Arabidopsis cotyledons: Degradation of lipid bodies, biogenesis of glyoxysomes and reorganisation of organelles during germination	4
	4
	4
The Journal of Microscopy would like to thank all those referees who reviewed papers for the Journal during 2021. Your assistance and contribution to the Journal is greatly apprec	4
	4
TOC ‐ Issue Information	4
Contrast by electron microscopy in thick biological specimens	4
The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker	4
Made to measure: An introduction to quantifying microscopy data in the life sciences	4
TOC ‐ Issue Information	3
Staying on track – Keeping things running in a high‐end scientific imaging core facility	3
Quantifying phase magnitudes of open‐source focused‐probe 4D‐STEM ptychography reconstructions	3
Image quality evaluation for FIB‐SEM images	3
Two‐stage particle separation channel based on standing surface acoustic wave	3
Setting up an institutional OMERO environment for bioimage data: Perspectives from both facility staff and users	3
Automated particle recognition for engine soot nanoparticles	3
The incorporation of Cu into the clinker phases	3
Handheld cross‐polarised microscope for imaging individual pigmented cells in human skin in vivo	3
Diversity under the microscope: Lessons for building belonging in interdisciplinary spaces from the Women in Imaging + Industry bootcamp	3
Influence of alumina ratio on reactions at the surface of alite crystals during cooling	3
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	3
Fourier ptychography microscopy for digital pathology	3
	3
Introduction to Festschrift for Professor Tony Wilson	3
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	3
PerfectlyAverage: A classical open‐source software method to determine the optimal averaging parameters in laser scanning fluorescence microscopy	3
Diagnostic electron microscopy in human infectious diseases – Methods and applications	3
Quantification of surface grinding during the sample preparation of cementitious materials by optical profilometry	3
Comparison of the SMLM technique and the MSSR algorithm in confocal microscopy for super‐resolved imaging of cellulose fibres	3
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	3
Preface to EMABM (Euroseminar on Microscopy Applied to Building Materials) 2022	3
From cells to pixels: A decision tree for designing bioimage analysis pipelines	3
Estimating microstructural feature distributions from image data using a Bayesian framework	3