Journal of Microscopy

Article	Citations
Study on line‐scan profile for a trapezoid line under varying sample temperatures through Monte–Carlo simulation	42
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A method for crystallographic mapping of an alpha‐beta titanium alloy with nanometre resolution using scanning precession electron diffraction and open‐source software libraries	28
Leveraging modified ex situ tomography data for segmentation of in situ synchrotron X‐ray computed tomography	28
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	25
Self‐pressurised rapid freezing at arbitrary cryoprotectant concentrations	22
High‐speed 4‐dimensional scanning transmission electron microscopy using compressive sensing techniques	22
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	22
RNA‐based CLEM (RCLEM) bridging RNA localisation and ultrastructural mapping in 3D	20
Innovating in a bioimaging core through instrument development	19
A practical guide to bioimaging research data management in core facilities	18
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Enhanced good practice for core facilities	16
Analogue optical pattern recognition for cross‐correlational CNN	16
Seven‐layer analysis model of an optical waveguide excitation fluorescence microscopy	15
Application of STEM tomography to investigate smooth ER morphology under stress conditions	15
High‐pressure freezing of mechanically stretched cells	15
Virtual dissection of Aedes aegypti mosquito using phase‐contrast synchrotron microtomography	14
Application of Noise2Inverse and adaptation (Noise2Phase) to single‐mask x‐ray phase contrast micro‐computed tomography	14
Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking	14
Stability of electron ptychography at low electron dose	13
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In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	13
Towards affordable biomedical imaging: Recent advances in low‐cost, high‐resolution optoacoustic microscopy	13
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	13
Subsurface phase imaging of tapping‐mode atomic force microscopy at phase resonance	12
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	12
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ApoNecV: A macro for cell death type differentiation	12
Repair effect of Centella asiatica (L.) extract on damaged HaCaT cells studied by atomic force microscopy	11
Subcellular localisation and identification of single atoms using quantitative scanning transmission electron microscopy	11
Multicamera simultaneous total internal reflection and interference reflection microscopy	10
Single‐shot differential phase contrast microscopy using ring‐shaped polarisation multiplexing illumination	10
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Characterisation of bond between cement paste and steel fibres with different surface roughness using SEM	10
Microscopy at a glance: New poster article series exploring the intersection of art, science and imaging	10
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	10
Traction force generation in Plasmodium sporozoites is modulated by a surface adhesin	10
Use of Melinex film for flat embedding tissue sections in LR White	10
Automated Euler number of the alveolar capillary network based on deep learning segmentation with verification by stereological methods	10
Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM	9
Investigation of the interface of fungal mycelium composite building materials by means of low‐vacuum scanning electron microscopy	9
CellPhePy: A python implementation of the CellPhe toolkit for automated cell phenotyping from microscopy time‐lapse videos	9
Development of a deep learning method for phase retrieval image enhancement in phase contrast microcomputed tomography	9
Ptychography: A brief introduction	9
Morphological and structural analysis of iron‐rich porcelains excavated from the Jian kiln site of Song dynasty	8
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Flexible implementation of modulated localisation microscopy based on DMD	8
Local spatial distribution of J‐aggregates in molecularly oriented bisazo‐dye thin films	8
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Fluorescence microscopic investigation of PCE superplasticiser adsorption in calcined clay blended cement	7
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Multiscale characterisation of cellulose nanofibril networks using three 3D imaging methods	7
A role for core facilities in improving research rigour	7
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ToTEM: A software for fast TEM image simulation	7
Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	7
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Automatic identification and quantification of surface nanoscale pore morphology in coals of different ranks based on AFM, SEM and LP‐N 2 GA	6
Response to Adler and Parmryd	6
Correction to “Image quality evaluation for FIB‐SEM images”	6
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	6
Simple Python‐based methods for analysis and drift‐correction of STM images	6
Tubule and microbranch variations in human dentine: A quantitative 3D study with serial block‐face scanning electron microscopy	6
Quantitative analysis of human umbilical vein endothelial cell morphology and tubulogenesis	6
Unveiling the limits of precision in iterative MINFLUX	6
A Python tool to determine the thickness of the hydrate layer around clinker grains using SEM‐BSE images	6
Open‐source hardware‐ and software‐based cryomicroscopy system for investigation of phase transitions in cryobiological research	6
A novel scanning tunnelling microscope head with a double‐piezo‐tube nested scanner for operation in a vibrational magnet	6
TUNA‐EBSD‐CL correlative multi‐microscopy study, on the example of Cu(In,Ga)S2 solar cell absorber	6
Microscopic investigation of the optical and morphological properties of iPP/TiO2 nanocomposite fibres using computed tomography technique	6
Correction to ‘Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live Zebrafish embryos’	6

Introduction to the Festschrift for Paul Walther	6
Primed conversion: The emerging player of precise and nontoxic photoconversion	6
Flash electropolishing for TEM: Reducing FIB‐induced defects in tungsten with protocols for new materials #	6
Correlation steered scanning with spiral scanning path for AFM to correct image distortion with real‐time compensation	6
Detecting charge transfer at defects in 2D materials with electron ptychography	5
The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker	5
Cryo‐SEM and large volume FIB‐SEM of Arabidopsis cotyledons: Degradation of lipid bodies, biogenesis of glyoxysomes and reorganisation of organelles during germination	5
From observation to understanding: A multi‐agent framework for smart microscopy	5
An automated slide scanning system for membrane filter imaging in diagnosis of urogenital schistosomiasis	5
Made to measure: An introduction to quantifying microscopy data in the life sciences	5
Characterisation and correction of polarisation effects in fluorescently labelled fibres	5
Confocal and multiphoton microscopy: A selective review	5
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A fluorescence lifetime separation approach for FLIM live‐cell imaging	5
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Comparative study on the Ru ware, Ru‐type ware of Qingliangsi kiln and celadon of Zhanggongxiang kiln	5
From EM to AI: Multiscale imaging of the secretory pathway with insights from plant cells	5
A detailed protocol for open and low‐cost six‐plex immunofluorescence (Flex‐6 mIHF) with a proof‐of‐concept study on breast cancer tissue	5
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	5
Advances in high‐resolution cryo‐volume electron microscopy (cvEM) imaging for unicellular and multicellular organisms	5
Determining bismuth content in GaAsBi alloys by energy‐dispersive X‐ray spectroscopy: A case study with multiple sets of k *‐factors for analytical trans	5
Correlation of near‐field optical microscopy and tip‐assisted photoluminescence	5
Comparison of holotomographic microscopy and coherence‐controlled holographic microscopy	5
Contrast by electron microscopy in thick biological specimens	5
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Image quality evaluation for FIB‐SEM images	4
Reduced order modelling of air‐puff test for corneal material characterisation	4
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Diversity under the microscope: Lessons for building belonging in interdisciplinary spaces from the Women in Imaging + Industry bootcamp	4
Estimating microstructural feature distributions from image data using a Bayesian framework	4
Single‐molecule validation and optimised protocols for the use of secondary nanobodies in multiplexed immunoassays	4
PerfectlyAverage: A classical open‐source software method to determine the optimal averaging parameters in laser scanning fluorescence microscopy	4
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Comparison of the SMLM technique and the MSSR algorithm in confocal microscopy for super‐resolved imaging of cellulose fibres	4
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Diagnostic electron microscopy in human infectious diseases – Methods and applications	4
Quantifying phase magnitudes of open‐source focused‐probe 4D‐STEM ptychography reconstructions	4
From cells to pixels: A decision tree for designing bioimage analysis pipelines	4
Closer to the native state: Sandwich freezing and freeze‐substitution of microorganisms, cultured cells, and animal and plant tissues for electron microscopy	4
Automated particle recognition for engine soot nanoparticles	4
Staying on track – Keeping things running in a high‐end scientific imaging core facility	4
Quantification of surface grinding during the sample preparation of cementitious materials by optical profilometry	4
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Handheld cross‐polarised microscope for imaging individual pigmented cells in human skin in vivo	4
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	4
Microstructural characterisation of polycrystalline ice with an etch‐pitting replication method	4
Background removal in fluorescence microscopy images based on baseline estimation	4
Multimodal optical microscopy defect detection method for indium bump arrays based on multi‐scale Demons deformation field difference	3
Dynamical simulation of on‐axis transmission Kikuchi and spot diffraction patterns, based on accurate diffraction geometry calibration	3
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Overcoming the challenges of preserving lipid‐richCannabis sativaL. glandular trichomes for transmission electron microscopy	3
Optimisation of freeze substitution protocols for the examination of malaria parasite structure by volumetric electron microscopy	3
Quantifying superimposed protein flow dynamics in live cells using spatial filtering and spatiotemporal image correlation spectroscopy	3
Revisiting PSF models: Unifying framework and high‐performance implementation	3
Introduction to Festschrift for Professor Tony Wilson	3
Data analysis in imaging (DAIM) – A new RMS science section	3
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Surface visualisation of bacterial biofilms using neutral atom microscopy	3
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Background Remover – An effective tool for processing noisy microscopy images	3
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Ptychographic analysis of human bone marrow‐derived mesenchymal stem cell morphology: The impact of cell senescence	3
Improving Cavalieri volume estimation based on non‐equidistant planar sections: The trapezoidal estimator	3
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	3
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Fast Gaussian fitting peak extraction for confocal microscopy	3
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ModularImageAnalysis (MIA): Assembly of modularised image and object analysis workflows in ImageJ	3
A quantitative irradiation microscopy platform for in situ observation of living cells with subcellular resolution under radiation conditions	3
Clinker based on calcium looped meals from the Cleanker Project	3
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Fourier ptychography microscopy for digital pathology	3
A novel experimental platform to monitor solid/water interfaces under freeze–thaw cycles	3
Integrated approaches for multiscale mitochondrial structure and function analysis	3
Setting up an institutional OMERO environment for bioimage data: Perspectives from both facility staff and users	3
Improving light microscopy training routines with evidence‐based education	3

Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	3
Strengthening research infrastructure through local networks of light microscopy facilities	3