OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Microscopy is 3. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-11-01 to 2025-11-01.)

Article	Citations
Study on line‐scan profile for a trapezoid line under varying sample temperatures through Monte–Carlo simulation	35
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TOC ‐ Issue Information	20
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High‐speed 4‐dimensional scanning transmission electron microscopy using compressive sensing techniques	17
Innovating in a bioimaging core through instrument development	17
Leveraging modified ex situ tomography data for segmentation of in situ synchrotron X‐ray computed tomography	17
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	17
A method for crystallographic mapping of an alpha‐beta titanium alloy with nanometre resolution using scanning precession electron diffraction and open‐source software libraries	17
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	16
Self‐pressurised rapid freezing at arbitrary cryoprotectant concentrations	16
Analogue optical pattern recognition for cross‐correlational CNN	15
A practical guide to bioimaging research data management in core facilities	15
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TOC ‐ Issue Information	15
Integrated opto‐mechanical cantilever sensor with a rib waveguide	13
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	13
Seven‐layer analysis model of an optical waveguide excitation fluorescence microscopy	13
Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking	13
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Application of STEM tomography to investigate smooth ER morphology under stress conditions	12
Towards affordable biomedical imaging: Recent advances in low‐cost, high‐resolution optoacoustic microscopy	12
High‐pressure freezing of mechanically stretched cells	12
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	12

Virtual dissection of Aedes aegypti mosquito using phase‐contrast synchrotron microtomography	12
ApoNecV: A macro for cell death type differentiation	12
Poly‐L‐lysine/hyaluronan nanocarriers as a novel nanosystem for gene delivery	11
Simple automation of SEM‐EDS spectral maps analysis with Python and the edxia framework	11
In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	11
High‐accuracy, direct aberration determination using self‐attention‐armed deep convolutional neural networks	11
Stability of electron ptychography at low electron dose	11
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Development of a deep learning method for phase retrieval image enhancement in phase contrast microcomputed tomography	10
Automated Euler number of the alveolar capillary network based on deep learning segmentation with verification by stereological methods	10
Subsurface phase imaging of tapping‐mode atomic force microscopy at phase resonance	10
Repair effect of Centella asiatica (L.) extract on damaged HaCaT cells studied by atomic force microscopy	10
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Traction force generation in Plasmodium sporozoites is modulated by a surface adhesin	9
Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM	9
Characterisation of bond between cement paste and steel fibres with different surface roughness using SEM	9
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Subcellular localisation and identification of single atoms using quantitative scanning transmission electron microscopy	9
Investigation of the interface of fungal mycelium composite building materials by means of low‐vacuum scanning electron microscopy	8
Ptychography: A brief introduction	8
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	8
Use of Melinex film for flat embedding tissue sections in LR White	8
Adsorption of PCE in alkali‐activated materials analysed by fluorescence microscopy	8
Microscopy at a glance: New poster article series exploring the intersection of art, science and imaging	8
Multicamera simultaneous total internal reflection and interference reflection microscopy	8
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CellPhePy: A python implementation of the CellPhe toolkit for automated cell phenotyping from microscopy time‐lapse videos	8
Single‐shot differential phase contrast microscopy using ring‐shaped polarisation multiplexing illumination	8
Challenges and advances in optical 3D mesoscale imaging	8
Fluorescence microscopic investigation of PCE superplasticiser adsorption in calcined clay blended cement	7
Flexible implementation of modulated localisation microscopy based on DMD	7
TOC ‐ Issue Information	7
TOC ‐ Issue Information	7
Automatic detection of Kikuchi bands based on Radon transform and PPHT	7
Morphological and structural analysis of iron‐rich porcelains excavated from the Jian kiln site of Song dynasty	7
Correction to ‘Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live Zebrafish embryos’	7
Material characteristics of historic scagliola interiors in Vienna: A view through the microscope	7
Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	7
ToTEM: A software for fast TEM image simulation	7
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A Python tool to determine the thickness of the hydrate layer around clinker grains using SEM‐BSE images	6
Primed conversion: The emerging player of precise and nontoxic photoconversion	6
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	6
Correction to “Image quality evaluation for FIB‐SEM images”	6
Open‐source hardware‐ and software‐based cryomicroscopy system for investigation of phase transitions in cryobiological research	6
Response to Adler and Parmryd	6
Introduction to the Festschrift for Paul Walther	6
Microscopic investigation of the optical and morphological properties of iPP/TiO₂ nanocomposite fibres using computed tomography technique	6
Unveiling the limits of precision in iterative MINFLUX	6
Automatic identification and quantification of surface nanoscale pore morphology in coals of different ranks based on AFM, SEM and LP‐N₂GA	6

Quantitative analysis of human umbilical vein endothelial cell morphology and tubulogenesis	6
Correlation steered scanning with spiral scanning path for AFM to correct image distortion with real‐time compensation	6
Simple Python‐based methods for analysis and drift‐correction of STM images	6
TOC ‐ Issue Information	5
TOC ‐ Issue Information	5
An automated slide scanning system for membrane filter imaging in diagnosis of urogenital schistosomiasis	5
Contrast by electron microscopy in thick biological specimens	5
An integrated optical waveguide micro‐cantilever system for chip‐based AFM	5
Characterisation and correction of polarisation effects in fluorescently labelled fibres	5
TUNA‐EBSD‐CL correlative multi‐microscopy study, on the example of Cu(In,Ga)S₂ solar cell absorber	5
Cryo‐SEM and large volume FIB‐SEM of Arabidopsis cotyledons: Degradation of lipid bodies, biogenesis of glyoxysomes and reorganisation of organelles during germination	5
Comparison of holotomographic microscopy and coherence‐controlled holographic microscopy	5
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	5
Detecting charge transfer at defects in 2D materials with electron ptychography	4
Implications of gnomonic distortion on electron backscatter diffraction and transmission Kikuchi diffraction	4
Made to measure: An introduction to quantifying microscopy data in the life sciences	4
The Journal of Microscopy would like to thank all those referees who reviewed papers for the Journal during 2021. Your assistance and contribution to the Journal is greatly apprec	4
Diagnostic electron microscopy in human infectious diseases – Methods and applications	4
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The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker	4
TOC ‐ Issue Information	4
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Comparison of the SMLM technique and the MSSR algorithm in confocal microscopy for super‐resolved imaging of cellulose fibres	4
Correlation of near‐field optical microscopy and tip‐assisted photoluminescence	4
Comparative study on the Ru ware, Ru‐type ware of Qingliangsi kiln and celadon of Zhanggongxiang kiln	4
A fluorescence lifetime separation approach for FLIM live‐cell imaging	4
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Handheld cross‐polarised microscope for imaging individual pigmented cells in human skin in vivo	4
Staying on track – Keeping things running in a high‐end scientific imaging core facility	4
Setting up an institutional OMERO environment for bioimage data: Perspectives from both facility staff and users	3
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	3
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	3
Image quality evaluation for FIB‐SEM images	3
Quantifying phase magnitudes of open‐source focused‐probe 4D‐STEM ptychography reconstructions	3
Quantification of surface grinding during the sample preparation of cementitious materials by optical profilometry	3
Diversity under the microscope: Lessons for building belonging in interdisciplinary spaces from the Women in Imaging + Industry bootcamp	3
TOC ‐ Issue Information	3
Fourier ptychography microscopy for digital pathology	3
Two‐stage particle separation channel based on standing surface acoustic wave	3
Fast Gaussian fitting peak extraction for confocal microscopy	3
A novel experimental platform to monitor solid/water interfaces under freeze–thaw cycles	3
PerfectlyAverage: A classical open‐source software method to determine the optimal averaging parameters in laser scanning fluorescence microscopy	3
TOC ‐ Issue Information	3
The incorporation of Cu into the clinker phases	3
TOC ‐ Issue Information	3
Automated particle recognition for engine soot nanoparticles	3
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	3
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Quantifying superimposed protein flow dynamics in live cells using spatial filtering and spatiotemporal image correlation spectroscopy	3
Optimisation of freeze substitution protocols for the examination of malaria parasite structure by volumetric electron microscopy	3
Improving light microscopy training routines with evidence‐based education	3
Microstructural characterisation of polycrystalline ice with an etch‐pitting replication method	3
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Estimating microstructural feature distributions from image data using a Bayesian framework	3
Influence of alumina ratio on reactions at the surface of alite crystals during cooling	3
From cells to pixels: A decision tree for designing bioimage analysis pipelines	3
Preface to EMABM (Euroseminar on Microscopy Applied to Building Materials) 2022	3
Introduction to Festschrift for Professor Tony Wilson	3
Ptychographic analysis of human bone marrow‐derived mesenchymal stem cell morphology: The impact of cell senescence	3
Trainable segmentation for transmission electron microscope images of inorganic nanoparticles	3
Data analysis in imaging (DAIM) – A new RMS science section	3