Journal of Microscopy

Article	Citations
Study on line‐scan profile for a trapezoid line under varying sample temperatures through Monte–Carlo simulation	42
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A method for crystallographic mapping of an alpha‐beta titanium alloy with nanometre resolution using scanning precession electron diffraction and open‐source software libraries	28
Leveraging modified ex situ tomography data for segmentation of in situ synchrotron X‐ray computed tomography	28
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	25
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	22
Self‐pressurised rapid freezing at arbitrary cryoprotectant concentrations	22
High‐speed 4‐dimensional scanning transmission electron microscopy using compressive sensing techniques	22
RNA‐based CLEM (RCLEM) bridging RNA localisation and ultrastructural mapping in 3D	20
Innovating in a bioimaging core through instrument development	19
A practical guide to bioimaging research data management in core facilities	18
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Analogue optical pattern recognition for cross‐correlational CNN	16
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Enhanced good practice for core facilities	16
High‐pressure freezing of mechanically stretched cells	15
Seven‐layer analysis model of an optical waveguide excitation fluorescence microscopy	15
Application of STEM tomography to investigate smooth ER morphology under stress conditions	15
Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking	14
Virtual dissection of Aedes aegypti mosquito using phase‐contrast synchrotron microtomography	14
Application of Noise2Inverse and adaptation (Noise2Phase) to single‐mask x‐ray phase contrast micro‐computed tomography	14
Towards affordable biomedical imaging: Recent advances in low‐cost, high‐resolution optoacoustic microscopy	13
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	13

Stability of electron ptychography at low electron dose	13
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In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	13
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ApoNecV: A macro for cell death type differentiation	12
Subsurface phase imaging of tapping‐mode atomic force microscopy at phase resonance	12
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	12
Repair effect of Centella asiatica (L.) extract on damaged HaCaT cells studied by atomic force microscopy	11
Subcellular localisation and identification of single atoms using quantitative scanning transmission electron microscopy	11
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	10
Traction force generation in Plasmodium sporozoites is modulated by a surface adhesin	10
Use of Melinex film for flat embedding tissue sections in LR White	10
Automated Euler number of the alveolar capillary network based on deep learning segmentation with verification by stereological methods	10
Multicamera simultaneous total internal reflection and interference reflection microscopy	10
Single‐shot differential phase contrast microscopy using ring‐shaped polarisation multiplexing illumination	10
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Characterisation of bond between cement paste and steel fibres with different surface roughness using SEM	10
Microscopy at a glance: New poster article series exploring the intersection of art, science and imaging	10
Development of a deep learning method for phase retrieval image enhancement in phase contrast microcomputed tomography	9
Ptychography: A brief introduction	9
Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM	9
Investigation of the interface of fungal mycelium composite building materials by means of low‐vacuum scanning electron microscopy	9
CellPhePy: A python implementation of the CellPhe toolkit for automated cell phenotyping from microscopy time‐lapse videos	9
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Morphological and structural analysis of iron‐rich porcelains excavated from the Jian kiln site of Song dynasty	8
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Flexible implementation of modulated localisation microscopy based on DMD	8
Local spatial distribution of J‐aggregates in molecularly oriented bisazo‐dye thin films	8
ToTEM: A software for fast TEM image simulation	7
Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	7
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Fluorescence microscopic investigation of PCE superplasticiser adsorption in calcined clay blended cement	7
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Multiscale characterisation of cellulose nanofibril networks using three 3D imaging methods	7
A role for core facilities in improving research rigour	7
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Open‐source hardware‐ and software‐based cryomicroscopy system for investigation of phase transitions in cryobiological research	6
A novel scanning tunnelling microscope head with a double‐piezo‐tube nested scanner for operation in a vibrational magnet	6
TUNA‐EBSD‐CL correlative multi‐microscopy study, on the example of Cu(In,Ga)S2 solar cell absorber	6
Microscopic investigation of the optical and morphological properties of iPP/TiO2 nanocomposite fibres using computed tomography technique	6
Correction to ‘Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live Zebrafish embryos’	6
Introduction to the Festschrift for Paul Walther	6
Primed conversion: The emerging player of precise and nontoxic photoconversion	6
Flash electropolishing for TEM: Reducing FIB‐induced defects in tungsten with protocols for new materials #	6
Correlation steered scanning with spiral scanning path for AFM to correct image distortion with real‐time compensation	6
Automatic identification and quantification of surface nanoscale pore morphology in coals of different ranks based on AFM, SEM and LP‐N 2 GA	6
Response to Adler and Parmryd	6
Correction to “Image quality evaluation for FIB‐SEM images”	6
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	6
Simple Python‐based methods for analysis and drift‐correction of STM images	6

Tubule and microbranch variations in human dentine: A quantitative 3D study with serial block‐face scanning electron microscopy	6
Quantitative analysis of human umbilical vein endothelial cell morphology and tubulogenesis	6
Unveiling the limits of precision in iterative MINFLUX	6
A Python tool to determine the thickness of the hydrate layer around clinker grains using SEM‐BSE images	6
Characterisation and correction of polarisation effects in fluorescently labelled fibres	5
Advances in high‐resolution cryo‐volume electron microscopy (cvEM) imaging for unicellular and multicellular organisms	5
Correlation of near‐field optical microscopy and tip‐assisted photoluminescence	5
Contrast by electron microscopy in thick biological specimens	5
Confocal and multiphoton microscopy: A selective review	5
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From EM to AI: Multiscale imaging of the secretory pathway with insights from plant cells	5
The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker	5
From observation to understanding: A multi‐agent framework for smart microscopy	5
Made to measure: An introduction to quantifying microscopy data in the life sciences	5
A detailed protocol for open and low‐cost six‐plex immunofluorescence (Flex‐6 mIHF) with a proof‐of‐concept study on breast cancer tissue	5
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	5
Determining bismuth content in GaAsBi alloys by energy‐dispersive X‐ray spectroscopy: A case study with multiple sets of k *‐factors for analytical trans	5
Comparison of holotomographic microscopy and coherence‐controlled holographic microscopy	5
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A fluorescence lifetime separation approach for FLIM live‐cell imaging	5
Comparative study on the Ru ware, Ru‐type ware of Qingliangsi kiln and celadon of Zhanggongxiang kiln	5
Detecting charge transfer at defects in 2D materials with electron ptychography	5
Cryo‐SEM and large volume FIB‐SEM of Arabidopsis cotyledons: Degradation of lipid bodies, biogenesis of glyoxysomes and reorganisation of organelles during germination	5
An automated slide scanning system for membrane filter imaging in diagnosis of urogenital schistosomiasis	5
Reduced order modelling of air‐puff test for corneal material characterisation	4
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Diversity under the microscope: Lessons for building belonging in interdisciplinary spaces from the Women in Imaging + Industry bootcamp	4
Estimating microstructural feature distributions from image data using a Bayesian framework	4
Single‐molecule validation and optimised protocols for the use of secondary nanobodies in multiplexed immunoassays	4
PerfectlyAverage: A classical open‐source software method to determine the optimal averaging parameters in laser scanning fluorescence microscopy	4
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Comparison of the SMLM technique and the MSSR algorithm in confocal microscopy for super‐resolved imaging of cellulose fibres	4
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Diagnostic electron microscopy in human infectious diseases – Methods and applications	4
Quantifying phase magnitudes of open‐source focused‐probe 4D‐STEM ptychography reconstructions	4
From cells to pixels: A decision tree for designing bioimage analysis pipelines	4
Closer to the native state: Sandwich freezing and freeze‐substitution of microorganisms, cultured cells, and animal and plant tissues for electron microscopy	4
Automated particle recognition for engine soot nanoparticles	4
Staying on track – Keeping things running in a high‐end scientific imaging core facility	4
Quantification of surface grinding during the sample preparation of cementitious materials by optical profilometry	4
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Handheld cross‐polarised microscope for imaging individual pigmented cells in human skin in vivo	4
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	4
Microstructural characterisation of polycrystalline ice with an etch‐pitting replication method	4
Background removal in fluorescence microscopy images based on baseline estimation	4
Image quality evaluation for FIB‐SEM images	4
Optimisation of freeze substitution protocols for the examination of malaria parasite structure by volumetric electron microscopy	3
Quantifying superimposed protein flow dynamics in live cells using spatial filtering and spatiotemporal image correlation spectroscopy	3
Revisiting PSF models: Unifying framework and high‐performance implementation	3
Introduction to Festschrift for Professor Tony Wilson	3
Data analysis in imaging (DAIM) – A new RMS science section	3
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Surface visualisation of bacterial biofilms using neutral atom microscopy	3
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Background Remover – An effective tool for processing noisy microscopy images	3
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Ptychographic analysis of human bone marrow‐derived mesenchymal stem cell morphology: The impact of cell senescence	3
Improving Cavalieri volume estimation based on non‐equidistant planar sections: The trapezoidal estimator	3
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	3
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Fast Gaussian fitting peak extraction for confocal microscopy	3
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ModularImageAnalysis (MIA): Assembly of modularised image and object analysis workflows in ImageJ	3
A quantitative irradiation microscopy platform for in situ observation of living cells with subcellular resolution under radiation conditions	3
Clinker based on calcium looped meals from the Cleanker Project	3
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Fourier ptychography microscopy for digital pathology	3
A novel experimental platform to monitor solid/water interfaces under freeze–thaw cycles	3
Integrated approaches for multiscale mitochondrial structure and function analysis	3
Setting up an institutional OMERO environment for bioimage data: Perspectives from both facility staff and users	3
Improving light microscopy training routines with evidence‐based education	3
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	3
Strengthening research infrastructure through local networks of light microscopy facilities	3
Multimodal optical microscopy defect detection method for indium bump arrays based on multi‐scale Demons deformation field difference	3
Dynamical simulation of on‐axis transmission Kikuchi and spot diffraction patterns, based on accurate diffraction geometry calibration	3

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Overcoming the challenges of preserving lipid‐richCannabis sativaL. glandular trichomes for transmission electron microscopy	3
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More than just ‘added value’: The perils of not establishing shared core facilities in resource‐constrained communities	2
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In situ quantification of ribosome number by electron tomography	2
Unravelling friction anisotropy by atomic force microscopy	2
Ultrastructural characterisation of young and aged dental enamel by atomic force microscopy	2
A Lens on the Future: Next Generation Microscopy by Next Generation Microscopists	2
Preparation and topographical studies of various biological specimens using alternate method to critical point drying: Scanning electron microscopy	2
Calibration by differentiation – Self‐supervised calibration for X‐ray microscopy using a differentiable cone‐beam reconstruction operator	2
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Resolution enhancement of total internal reflection microscopy via polarised scattering	2
Applications of clinker microscopy for approaching a special case study in cement production	2
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Ultrastructural expansion microscopy reveals unexpected levels of glycosome heterogeneity in African trypanosomes	2
Pictures at an exhibition: How to share your imaging data	2
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Study of curtaining effect reduction methods in Inconel 718 using a plasma focused ion beam	2
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The fertility tracks of pollen tube in the ovary of Solanum nigrum by three‐dimensional reconstruction	2
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Live cell imaging of plant infection provides new insight into the biology of pathogenesis by the rice blast fungus Magnaporthe oryzae	2
Modelling 3D supramolecular structure from sparse single‐molecule localisation microscopy data	2
Important aspects of investigating optical excitations in semiconductors using a scanning transmission electron microscope	2
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A method for the fast and photon‐efficient analysis of time‐domain fluorescence lifetime image data over large dynamic ranges	2
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Optimisation of EDS quantitative f‐ratio method via ZAF correction	2
3D microscopy in industrial measurements	2
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Morphological analysis and grain size distribution of SnO2 nanoparticles via digital image processing across diverse calcination temperatures	2
Differential phase contrast (DPC) mapping electric fields: Optimising experimental conditions	2
Practical strategies for robust and inexpensive imaging of aqueous‐cleared tissues	2
A new approach to etching low‐carbon microalloyed steels to reveal prior austenite grain boundaries and the dual‐phase microstructure	2
Paste, aggregate, or air? That is the question	2
Accelerating iterative ptychography with an integrated neural network	2
Global survey of microscopy core facilities	2
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Suborganellar resolution imaging for the localisation of human glycosylation enzymes in tobacco Golgi bodies	2
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Electrolyte pH dependence of composition, roughness parameters, particle diameter and magnetic features of nanostructured Fe‐Co‐Ni/ITO deposits prepared by electrochemical deposition method	2
Atomic resolution imaging using a novel, compact and stiff scanning tunnelling microscope in cryogen‐free superconducting magnet	2
Slags from roasting of antimony ore in the Brioude‐Massiac (France) area used as aggregates: An early example of circular economy	2
Simultaneous axial and radial swelling studies from 2D stereozoom images of tablet compacts composed of superdisintegrants	2
Effect of the delayed wash (deglycerolisation) on the red blood cell morphology: Comparison of AFM and optical profilometry	2
Mechanism of action and side effects of colchicine based on biomechanical properties of cells	2
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Application of various microscopy techniques to study early‐age and longer‐term behaviour of super sulphated cement microstructure	2
An overview of reliable and representative DVC measurements for musculoskeletal tissues	2
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Investigations on lightweight concrete by in situ compression tests using high‐resolution computed tomography (μ‐CT)	2
Commentary on critique and rebuttal of ‘On the pixel selection criterion for the calculation of the Pearson's correlation coefficient in fluorescence microscopy’	2
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Unravelling molecular dynamics in living cells: Fluorescent protein biosensors for cell biology	2
Sulphate resistance of low‐clinker engineered cementitious composites examined by MicroXRF imaging	2
MAM‐UNet: A multiple attention mechanism UNet for the eutectic segmentation of superalloys	2
Visualisation and differentiation of binder components in hard carbon composite anodes by osmium tetroxide and uranyl acetate staining	2
Substrate‐related optical activity in monolayer WS2${\rm WS}_2$ and MoSe2${\rm MoSe}_2$: A tip‐enhanced Raman spectroscopy study	1
A novel morphological descriptor for multiphase microstructure reconstruction	1
Comparison of two Monte Carlo approaches for homogeneous bulk samples	1
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Imaging malaria parasites across scales and time	1
Hierarchical reconstruction of three‐dimensional porous media from a single two‐dimensional image with multiscale entropy statistics	1
Towards super‐resolved terahertz microscopy for cellular imaging	1
Introduction to women in microscopy: Volume 2	1
Modulation of host cell membrane biophysics dynamics by Neospora caninum : A study using LAURDAN fluorescence with hyperspectral imaging and phasor analy	1
Physical properties and photocatalytic activity of Cr‐doped TiO2 nanoparticles	1
The microstructure and thermal stability of the two‐phase amorphous melt‐spun alloys ejected from a double‐chamber crucible	1
A workflow for semi‐automated volume correlative light microscopy and transmission electron tomography	1
A detailed protocol for expansion microscopy of Paracentrotus lividus embryos and larvae: Incorporating decalcification for improved imaging	1
Introduction to the special issue	1
Introduction to special issue ‘12th International Botanical Microscopy Meeting’	1
Crossing scales and eras: Correlative multimodal microscopy heritage studies	1
Advancing collagen‐related pathology assessment through second‐harmonic generation imaging	1
Compressive electron backscatter diffraction imaging	1
A rapid freezing method to determine tissue layer thickness in drought‐stressed leaves	1
EBSD patterns simulating multilayer twins based on dynamical theory of electron diffraction	1
Wear mechanisms description in nanoscale by SEM/TEM of multilayer Zr/ZrN coatings in dependence on phases ratio	1
Expertise is the new infrastructure	1
An alignment algorithm using coherent twin boundaries as internal reference in 3D‐EBSD	1
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Model‐free machine learning‐based 3D single molecule localisation microscopy	1
The mutual influence of microtubules and the cortical ER on their coordinated organisation	1
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Spatial light modulation for interferometric scattering microscopy	1
The changing landscape of training in microscopy facilities: Reflections on seven decades of research user support at the University of Sydney	1
A hybrid model for structured illumination microscopy reconstruction using attention mechanism and deep Laplacian pyramid network with Fourier loss	1
Thickness measurement of cell walls of closed‐cell foams in micro‐CT images	1
Correction to “Exploring poly‐L‐lysine‐based particle capture for atomic force microscopy studies of extracellular vesicles”	1
Cements and concretes materials characterisation using machine‐learning‐based reconstruction and 3D quantitative mineralogy via X‐ray microscopy	1
Expansion microscopy: A revolution in diagnostic pathology	1
Built to be shared: Lessons from the Canada Foundation for Innovation (CFI) on funding core facilities	1
Incorporation of antimony‐bearing mining wastes into clinker Portland raw feed: The difficulty of Sb analysis in calcium silicates	1