Journal of Microscopy

Article	Citations
Comparing Xe+pFIB and Ga+FIB for TEM sample preparation of Al alloys: Minimising FIB‐induced artefacts	37
QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy	36
Effect of aging and rejuvenation on adhesion properties of modified asphalt binder based on AFM	30
Semi‐automatic stitching of filamentous structures in image stacks from serial‐section electron tomography	22
pycotem: An open source toolbox for online crystal defect characterization from TEM imaging and diffraction	17
How innovations in methodology offer new prospects for volume electron microscopy	17
Using hybrid atomic force microscopy and infrared spectroscopy (AFM‐IR) to identify chemical components of the hair medulla on the nanoscale	16
Robust deep learning optical autofocus system applied to automated multiwell plate single molecule localization microscopy	14
Assessment of the impacts of sample preparation on the use of EDS for analysing recycled asphalt blending	13
Analysis of misidentifications in TEM characterisation of organic‐inorganic hybrid perovskite material	13
A review of high‐resolution microscopic ghost imaging with a low‐dose pseudothermal light	13
Challenges and advances in optical 3D mesoscale imaging	13
Sensitivity of remote focusing microscopes to magnification mismatch	12
Challenges and opportunities for bioimage analysis core‐facilities	11
Morphological analysis and grain size distribution of SnO2 nanoparticles via digital image processing across diverse calcination temperatures	11
Wavefront‐sensorless adaptive optics with a laser‐free spinning disk confocal microscope	11
Microstructural examination of carbonated 3D‐printed concrete	11
Kikuchi pattern simulations of backscattered and transmitted electrons	11
Fluorescence fluctuation‐based super‐resolution microscopy: Basic concepts for an easy start	11
Laboratory phase‐contrast nanotomography of unstained Bombus terrestris compound eyes	10
Fast, high‐precision autofocus on a motorised microscope: Automating blood sample imaging on the OpenFlexure Microscope	10
Carbonated wollastonite – An effective supplementary cementitious material?	9
DeepFRAP: Fast fluorescence recovery after photobleaching data analysis using deep neural networks	9
Practical segmentation of nuclei in brightfield cell images with neural networks trained on fluorescently labelled samples	9
Quantification of the bone lacunocanalicular network from 3D X‐ray phase nanotomography images	9

Trainable segmentation for transmission electron microscope images of inorganic nanoparticles	9
Individual fibre separation in 3D fibrous materials imaged by X‐ray tomography	8
Analysing neutron radiation damage in YBa2Cu3O7–x high‐temperature superconductor tapes	8
High‐accuracy, direct aberration determination using self‐attention‐armed deep convolutional neural networks	8
Real‐time monitoring of carbonation of hardened cement pastes using Raman microscopy	8
Simple automation of SEM‐EDS spectral maps analysis with Python and the edxia framework	8
Calibration by differentiation – Self‐supervised calibration for X‐ray microscopy using a differentiable cone‐beam reconstruction operator	8
ToTEM: A software for fast TEM image simulation	8
Towards super‐resolved terahertz microscopy for cellular imaging	7
Evaluation of correlated studies using liquid cell and cryo‐transmission electron microscopy: Hydration of calcium sulphate and the phase transformation pathways of bassanite to gypsum	7
Three‐dimensional transfer function of optical microscopes in reflection mode	7
Convolutional neural networks for segmentation of FIB‐SEM nanotomography data from porous polymer films for controlled drug release	7
Physical properties and photocatalytic activity of Cr‐doped TiO2 nanoparticles	7
Open‐source deep learning‐based air‐void detection algorithm for concrete microscopic images	7
openFrame: A modular, sustainable, open microscopy platform with single‐shot, dual‐axis optical autofocus module providing high precision and long range of operation	7
intER‐ACTINg: The structure and dynamics of ER and actin are interlinked	7
Optimizing and applying high‐resolution, in‐line laboratory phase‐contrast X‐ray imaging for low‐density material samples	7
Multimodal image reconstruction from tomographic diffraction microscopy data	7
A method for reproducible high‐resolution imaging of 3D cancer cell spheroids	7
Expansion microscopy: A revolution in diagnostic pathology	6
Measuring the randomness of micro‐ and nanostructure spatial distributions: Effects of scanning electron microscope image processing and analysis	6
Improving light microscopy training routines with evidence‐based education	6
Poly‐L‐lysine/hyaluronan nanocarriers as a novel nanosystem for gene delivery	6
Mass fractal dimension from 2D microscopy images via an aggregation model with variable compactness	6
Wear debris released by hip prosthesis analysed by microcomputed tomography	6
Reconstructing 3D digital model without distortion for poorly conductive porous rock by nanoprobe‐assisted FIB‐SEM tomography	6
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	6
What is the structure of our infrastructure? A review of UK light microscopy facilities	6
Evaluation and application of a new scintillator‐based heat‐resistant back‐scattered electron detector during heat treatment in the scanning electron microscope	6
Correlative imaging using super‐resolution fluorescence microscopy and soft X‐ray tomography at cryogenic temperatures provides a new way to assess virosome solutions for vaccine development	6
Optical comparison between micro‐CT and OCT in imaging of marginal composite adaptation: Observational study	6
Correlative light and volume electron microscopy (vCLEM): How community participation can advance developing technologies	6
Protein secondary structure signatures from energy loss spectra recorded in the electron microscope	6
The challenges and opportunities of open‐access microscopy facilities	6
Quantitative analysis of backscattered‐electron contrast in scanning electron microscopy	6
Workflow for high‐resolution phase segmentation of cement clinker from combined BSE image and EDX spectral data	6
Local Kikuchi band detection in electron backscatter diffraction patterns for enhanced pattern indexing	5
Method for acquiring accurate coordinates of the source point in electron backscatter diffraction	5
X‐ray microtomosynthesis of unstained pathology tissue samples	5
X‐ray computed tomography evaluations of additive manufactured multimaterial composites	5
A through‐focus scanning optical microscopy dimensional measurement method based on deep‐learning classification model	5
Estimation of an uncertainty budget and performance measurement for a dual‐wavelength Twyman‐Green interferometer	5
PUMA – An open‐source 3D‐printed direct vision microscope with augmented reality and spatial light modulator functions	5
Combining atomic force microscopy with complementary techniques for multidimensional single‐cell analysis	5
Two‐stage particle separation channel based on standing surface acoustic wave	5
CellProfiler plugins – An easy image analysis platform integration for containers and Python tools	5
Automated tracking of S. pombe spindle elongation dynamics	4
The relation between the average diameter of CNTs on Ni–Cu @ a‐C:H catalyst with the optical absorption edge and the optical dispersion parameters	4
Automated particle recognition for engine soot nanoparticles	4
The effects of measurement parameters on the cancerous cell nucleus characterisation by atomic force microscopy in vitro	4

Determination of the refractive index and wavelength‐dependent optical properties of few‐layer CrCl within the Fresnel formalism	4
Methods to expose subsurface objects of interest identified from 3D imaging: The intermediate sample preparation stage in the correlative microscopy workflow	4
Made to measure: An introduction to quantifying microscopy data in the life sciences	4
Electrolyte pH dependence of composition, roughness parameters, particle diameter and magnetic features of nanostructured Fe‐Co‐Ni/ITO deposits prepared by electrochemical deposition method	4
Elemental mapping of labelled biological specimens at intermediate energy loss in an energy‐filtered TEM acquired using a direct detection device	4
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	4
Bridging imaging users to imaging analysis – A community survey	4
The incorporation of Cu into the clinker phases	4
Correction and quantification of MTF in scanning laser microscopy	4
Imaging error compensation method for through‐focus scanning optical microscopy images based on deep learning	4
3D differential interference contrast microscopy using polarisation‐sensitive tomographic diffraction microscopy	4
Real‐Time Optical Vascular Imaging, a new method for the diagnosis and monitoring of oral diseases	4
Reconstruction of calcium silicate hydrates using multiple 2D and 3D imaging techniques: Light microscopy, μ‐CT, SEM, FIB‐nT combined with EDX	4
Method for quantifying the reaction degree of slag in alkali‐activated cements using deep learning‐based electron microscopy image analysis	4
Effect of trypsin concentration on living SMCC‐7721 cells studied by atomic force microscopy	4
An x‐ray microanalytical method for measuring in vivo element and water concentrations, relating to osmoregulation, in cells and tissues of the posterior eye	4
Nanoscale morphology and fractal analysis of TiO2 coatings on ITO substrate by electrodeposition	4
A new approach to etching low‐carbon microalloyed steels to reveal prior austenite grain boundaries and the dual‐phase microstructure	4
In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	4
Towards real‐time STEM simulations through targeted subsampling strategies	4
Perspective of fibre‐optical microendoscopy with microlenses	3
Integrated opto‐mechanical cantilever sensor with a rib waveguide	3
Automated tilt compensation in acoustic microscopy	3
Effectual accuracy of OCT image retinal segmentation with the aid of speckle noise reduction and boundary edge detection strategy	3
Optimizing the SEM specimen preparation method for accurate microanalysis of carbon nanotube/nanocluster hybrids	3
Overcoming the challenges of preserving lipid‐richCannabis sativaL. glandular trichomes for transmission electron microscopy	3
Phase determination in dual phase steels via HREBSD‐based tetragonality mapping	3
Establishing a reference focal plane using beads for trypan‐blue‐based viability measurements	3
The dissociation of (a+c) misfit dislocations at the InGaN/GaN interface	3
Atomic resolution imaging using a novel, compact and stiff scanning tunnelling microscope in cryogen‐free superconducting magnet	3
Staying on track – Keeping things running in a high‐end scientific imaging core facility	3
Theoretical model and experimental study on environmental dissipation mechanism of tapping mode atomic force microscope	3
Ultrastructural characterisation of young and aged dental enamel by atomic force microscopy	3
Depth estimation method of surface of micropart in microassembly space based on microscopic vision tomographic scanning images	3
ModularImageAnalysis (MIA): Assembly of modularised image and object analysis workflows in ImageJ	3
‘Branded’ microscopy core facilities – Mutually beneficial partnerships between academia and industry	3
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A multi‐technique study of corrosion products at the steel–concrete interface under two exposure conditions	3
Laser‐based sample preparation for high‐resolution X‐ray‐computed tomography of glasses and glass ceramics	3
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Recognising the importance and impact of Imaging Scientists: Global guidelines for establishing career paths within core facilities	3
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	3
A critical catalogue of SEM‐EDS multispectral maps analysis methods and their application to hydrated cementitious materials	3
Exploring confocal laser scanning microscopy (CLSM) and fluorescence staining as a tool for imaging and quantifying traces of marine microbioerosion and their trace‐making microendoliths	3
Towards artefact‐free AFM image presentation and interpretation	3
Thickness profiling of electron transparent aluminium alloy foil using convergent beam electron diffraction	3
Quantification of cracks in concrete thin sections considering current methods of image analysis	3
First visualisation of bacterial biofilms in 3D porous media with neutron microtomography without contrast agent	2
Growth of C‐S‐H phases on different metallic surfaces	2
Fast 3D imaging of giant unilamellar vesicles using reflected light‐sheet microscopy with single molecule sensitivity	2
Wear mechanisms description in nanoscale by SEM/TEM of multilayer Zr/ZrN coatings in dependence on phases ratio	2
A case study of distress mechanism(s) in a concrete structure foundation in the saturated zone and above the saturated zone	2
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	2
Identifying rotational symmetry axes in Kikuchi patterns by reciprocal vectors	2
Segmentation of SEM images of multiphase materials: When Gaussian mixture models are accurate?	2
In memoriam – Hans Jørgen Gottlieb Gundersen	2
Work smart, not hard: How array tomography can help increase the ultrastructure data output	2
Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	2
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	2
Complete holography‐based system for the identification of microparticles in water samples	2
Practical strategies for robust and inexpensive imaging of aqueous‐cleared tissues	2
Field‐dependent abundances of hydride molecular ions in atom probe tomography of III‐N semiconductors	2
The evolution of indium precipitation in gallium focused ion beam prepared samples of InGaAs/InAlAs quantum wells under electron beam irradiation	2
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	2
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	2
A practical guide to bioimaging research data management in core facilities	2
Experimental test of the geometric model of image formation in bright‐field microscopy	2
A method for the fast and photon‐efficient analysis of time‐domain fluorescence lifetime image data over large dynamic ranges	2
Analysis of 3D elemental distribution in nanomaterials: Towards higher throughput and dose efficiency	2
Site‐specific angular dependent determination of inelastic mean free path of 300 keV electrons in GaN nanorods	2
Mitophagy in plants: Emerging regulators of mitochondrial targeting for selective autophagy	2
Evaluation of classification methods for identifying multiwalled carbon nanotubes collected on mixed cellulose ester filter media	2
Estimating microstructural feature distributions from image data using a Bayesian framework	2
Towards quantification of doping in gallium arsenide nanostructures by low‐energy scanning electron microscopy and conductive atomic force microscopy	2
Neural network fast‐classifies biological images through features selecting to power automated microscopy	2
Handheld cross‐polarised microscope for imaging individual pigmented cells in human skin in vivo	2
The effects of despeckling filters on pore size measurements in collagen scaffold micro‐CT data	2
Cements and concretes materials characterisation using machine‐learning‐based reconstruction and 3D quantitative mineralogy via X‐ray microscopy	2
A perspective into full cost recovery within a core facility/shared resource lab	2
More than just ‘added value’: The perils of not establishing shared core facilities in resource‐constrained communities	2

Optimized dopant imaging for GaN by a scanning electron microscopy	2
Marked point process analysis of epidermal nerve fibres	2
Reconstruction of 3D greyscale image for reservoir rock from a single image based on pattern dictionary	2
GaN atomic electric fields from a segmented STEM detector: Experiment and simulation	2
Direct etching of nano/microscale patterns with both few‐layer graphene and high‐depth graphite structures by the raster STM electric lithography in the ambient conditions	2
Assessment of the self‐healing capacity of cementitious materials through active thin sections	2
The effect of specimen preparation on the nanostructure of SLES aqueous solutions observed by cryo‐TEM	2
Exploring the microstructure of hydrated collagen hydrogels under scanning electron microscopy	2
Adsorption of PCE in alkali‐activated materials analysed by fluorescence microscopy	2
High‐resolution X‐ray tomographic workflow to investigate the stress distribution in vitreous enamel steels	2
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	1
Implications of gnomonic distortion on electron backscatter diffraction and transmission Kikuchi diffraction	1
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Self‐pressurised rapid freezing at arbitrary cryoprotectant concentrations	1
Measuring coefficient of thermal expansion of materials of micrometre size using SEM/FIB microscope with in situ MEMS heating stage	1
Thickness measurement of cell walls of closed‐cell foams in micro‐CT images	1
Setting up a light microscopy core facility: Facility design	1
Multimodal optical mesoscopy reveals the quantity and spatial distribution of Gram‐positive biofilms in ex vivo tonsils	1
The rise of data‐driven microscopy powered by machine learning	1
STED nanoscopy – A novel way to image the pore space of geological materials	1
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	1
A multiangle polarised imaging‐based method for thin section segmentation	1
On the pixel selection criterion for the calculation of the Pearson's correlation coefficient in fluorescence microscopy	1
Automatic detection of Kikuchi bands based on Radon transform and PPHT	1
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Visualising the effect of freezing on the vascular system of wheat in three dimensions by in‐block imaging of dye‐infiltrated plants	1
Image quality evaluation for FIB‐SEM images	1
Diversity under the microscope: Lessons for building belonging in interdisciplinary spaces from the Women in Imaging + Industry bootcamp	1
Incorporation of antimony‐bearing mining wastes into clinker Portland raw feed: The difficulty of Sb analysis in calcium silicates	1
Imaging plant cell walls using fluorescent stains: The beauty is in the details	1
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Advanced characterisation of 3D structure and porosity of ordinary portland cement (OPC) mortar using plasma focused ion beam tomography and X‐ray computed tomography	1
Carbon‐film‐based Zernike phase plates with smooth thickness gradient for phase‐contrast transmission electron microscopy with reduced fringing artefacts	1
Recent technical advances in whole slide imaging instrumentation	1
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Early hydration of C4AF with silica fume and its role on katoite composition	1
Study of curtaining effect reduction methods in Inconel 718 using a plasma focused ion beam	1
Advancement and challenges in sample preparation for atomic force microscopy and infrared microscopy for wood‐based materials	1
Several factors influencing energy‐loss near‐edge structure calculations using Wien2k	1
Comments on Dr Whittaker's letter and the article	1
Tales from the crick: The art of demo	1
A bird's eye view on microscopy	1
Facet type determination based on combined atomic force microscopy and electron backscatter diffraction	1
The role of CuO on the microstructure and phase composition of SO3‐activated clinker	1
Scanning electron microscopy and energy dispersive spectrometry analyses of ancient bronze artefacts of the Urartian period from Yegheghnadzor region, Armenia	1
Mesoscale standing wave imaging	1
Material characteristics of historic scagliola interiors in Vienna: A view through the microscope	1
Enhancing resolution and contrast in fibre bundle‐based fluorescence microscopy using generative adversarial network	1
Surface‐enhanced Raman spectroscopy and ultrastructural analysis of penicillin‐producing Penicillium rubens strains	1
Visualisation of microalgal lipid bodies through electron microscopy	1
Digital holographic microscopy of spiropyran‐based dynamic materials	1
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	1
Important aspects of investigating optical excitations in semiconductors using a scanning transmission electron microscope	1
Microstructural evolution during short heat treatment of constrained groove pressed Cu‐5%Zn alloy	1
Mechanism of action and side effects of colchicine based on biomechanical properties of cells	1
Addressing multiscale microbial challenges using the Mesolens	1
Diffusion distribution model for damage mitigation in scanning transmission electron microscopy	1
Differential phase contrast (DPC) mapping electric fields: Optimising experimental conditions	1
Uncertainty model for automated gunshot residue particle length measurements obtained from electron microscopy images	1
Creating and troubleshooting microscopy analysis workflows: Common challenges and common solutions	1
Use of a refractive index–coupled diffuser to both generate and measure high‐numerical aperture illumination for light microscopy	1
A quantitative study of the influence of cement matrix impregnation on yarn pullout strength using combined confocal microscopy and double resin impregnation	1
Studying crystallisation processes using electron microscopy: The importance of sample preparation	1
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Flexible implementation of modulated localisation microscopy based on DMD	1
Pictures at an exhibition: How to share your imaging data	1
Unconvincing evidence that Beale's Mathematician is Robert Hooke	1
The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker	1
The election of women as Fellows of the Royal Microscopical Club	1
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Comparison of microstructural imaging of the root canal isthmus using propagation‐based X‐ray phase‐contrast and absorption micro‐computed tomography	1
The restriction of calcium influx in metaphase and post‐metaphase stages of cell division revealed by imaging secondary ion mass spectrometry (SIMS)	1
Surface passivation and functionalisation for mass photometry	1