OOIR: Observatory of International Research

Papers

(The median citation count of Journal of Microscopy is 0. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-05-01 to 2025-05-01.)

Article	Citations
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TOC ‐ Issue Information	37
Self‐pressurised rapid freezing at arbitrary cryoprotectant concentrations	29
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High‐speed 4‐dimensional scanning transmission electron microscopy using compressive sensing techniques	18
TOC ‐ Issue Information	18
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Laboratory phase‐contrast nanotomography of unstained Bombus terrestris compound eyes	17
Innovating in a bioimaging core through instrument development	17
A method for crystallographic mapping of an alpha‐beta titanium alloy with nanometre resolution using scanning precession electron diffraction and open‐source software libraries	16
Study on line‐scan profile for a trapezoid line under varying sample temperatures through Monte–Carlo simulation	15
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	15
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	14
Integrated opto‐mechanical cantilever sensor with a rib waveguide	14
A practical guide to bioimaging research data management in core facilities	14
TOC ‐ Issue Information	13
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	12
High‐pressure freezing of mechanically stretched cells	12
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	12
ApoNecV: A macro for cell death type differentiation	11
Poly‐L‐lysine/hyaluronan nanocarriers as a novel nanosystem for gene delivery	11
In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	11
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Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking	10
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Towards affordable biomedical imaging: Recent advances in low‐cost, high‐resolution optoacoustic microscopy	10
Seven‐layer analysis model of an optical waveguide excitation fluorescence microscopy	10
Simple automation of SEM‐EDS spectral maps analysis with Python and the edxia framework	9
High‐accuracy, direct aberration determination using self‐attention‐armed deep convolutional neural networks	9
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Subcellular localisation and identification of single atoms using quantitative scanning transmission electron microscopy	8
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TOC ‐ Issue Information	8
Characterisation of bond between cement paste and steel fibres with different surface roughness using SEM	8
Repair effect of Centella asiatica (L.) extract on damaged HaCaT cells studied by atomic force microscopy	8
CellPhePy: A python implementation of the CellPhe toolkit for automated cell phenotyping from microscopy time‐lapse videos	8
Automated Euler number of the alveolar capillary network based on deep learning segmentation with verification by stereological methods	8
Adsorption of PCE in alkali‐activated materials analysed by fluorescence microscopy	8
Subsurface phase imaging of tapping‐mode atomic force microscopy at phase resonance	8
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	7
Single‐shot differential phase contrast microscopy using ring‐shaped polarisation multiplexing illumination	7
Microscopy at a glance: New poster article series exploring the intersection of art, science and imaging	7
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Investigation of the interface of fungal mycelium composite building materials by means of low‐vacuum scanning electron microscopy	7
Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM	7
Use of Melinex film for flat embedding tissue sections in LR White	7
Multicamera simultaneous total internal reflection and interference reflection microscopy	7
Challenges and advances in optical 3D mesoscale imaging	6
Automatic detection of Kikuchi bands based on Radon transform and PPHT	6
Open‐source hardware‐ and software‐based cryomicroscopy system for investigation of phase transitions in cryobiological research	6
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	6
Fluorescence microscopic investigation of PCE superplasticiser adsorption in calcined clay blended cement	6
ToTEM: A software for fast TEM image simulation	6
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TOC ‐ Issue Information	6
Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	6
Morphological and structural analysis of iron‐rich porcelains excavated from the Jian kiln site of Song dynasty	6
Material characteristics of historic scagliola interiors in Vienna: A view through the microscope	6
In memoriam – Hans Jørgen Gottlieb Gundersen	6
Flexible implementation of modulated localisation microscopy based on DMD	6
A Python tool to determine the thickness of the hydrate layer around clinker grains using SEM‐BSE images	5
Correction to “Image quality evaluation for FIB‐SEM images”	5
Quantitative analysis of human umbilical vein endothelial cell morphology and tubulogenesis	5
Primed conversion: The emerging player of precise and nontoxic photoconversion	5
Microscopic investigation of the optical and morphological properties of iPP/TiO₂ nanocomposite fibres using computed tomography technique	5
Elemental mapping of labelled biological specimens at intermediate energy loss in an energy‐filtered TEM acquired using a direct detection device	5
Corrigendum	5
An automated slide scanning system for membrane filter imaging in diagnosis of urogenital schistosomiasis	5
TOC ‐ Issue Information	5
Correction to ‘Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live Zebrafish embryos’	5
Unveiling the limits of precision in iterative MINFLUX	5
Comparison of holotomographic microscopy and coherence‐controlled holographic microscopy	5

Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	4
TUNA‐EBSD‐CL correlative multi‐microscopy study, on the example of Cu(In,Ga)S₂ solar cell absorber	4
The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker	4
A case study of distress mechanism(s) in a concrete structure foundation in the saturated zone and above the saturated zone	4
TOC ‐ Issue Information	4
TOC ‐ Issue Information	4
Characterisation and correction of polarisation effects in fluorescently labelled fibres	4
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PUMA – An open‐source 3D‐printed direct vision microscope with augmented reality and spatial light modulator functions	4
An integrated optical waveguide micro‐cantilever system for chip‐based AFM	4
Made to measure: An introduction to quantifying microscopy data in the life sciences	4
Detecting charge transfer at defects in 2D materials with electron ptychography	4
Implications of gnomonic distortion on electron backscatter diffraction and transmission Kikuchi diffraction	4
Comparative study on the Ru ware, Ru‐type ware of Qingliangsi kiln and celadon of Zhanggongxiang kiln	4
Kikuchi pattern simulations of backscattered and transmitted electrons	4
Semi‐automatic stitching of filamentous structures in image stacks from serial‐section electron tomography	4
Cryo‐SEM and large volume FIB‐SEM of Arabidopsis cotyledons: Degradation of lipid bodies, biogenesis of glyoxysomes and reorganisation of organelles during germination	4
Comparison of microstructural imaging of the root canal isthmus using propagation‐based X‐ray phase‐contrast and absorption micro‐computed tomography	4
Comparison of the SMLM technique and the MSSR algorithm in confocal microscopy for super‐resolved imaging of cellulose fibres	3
TOC ‐ Issue Information	3
Quantifying phase magnitudes of open‐source focused‐probe 4D‐STEM ptychography reconstructions	3
Staying on track – Keeping things running in a high‐end scientific imaging core facility	3
Estimating microstructural feature distributions from image data using a Bayesian framework	3
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	3
Automated particle recognition for engine soot nanoparticles	3
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Quantification of surface grinding during the sample preparation of cementitious materials by optical profilometry	3
Diversity under the microscope: Lessons for building belonging in interdisciplinary spaces from the Women in Imaging + Industry bootcamp	3
TOC ‐ Issue Information	3
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	3
The incorporation of Cu into the clinker phases	3
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Diagnostic electron microscopy in human infectious diseases – Methods and applications	3
The Journal of Microscopy would like to thank all those referees who reviewed papers for the Journal during 2021. Your assistance and contribution to the Journal is greatly apprec	3
Handheld cross‐polarised microscope for imaging individual pigmented cells in human skin in vivo	3
Data analysis in imaging (DAIM) – A new RMS science section	3
Image quality evaluation for FIB‐SEM images	3
Influence of alumina ratio on reactions at the surface of alite crystals during cooling	3
Clinker based on calcium looped meals from the Cleanker Project	2
Real‐time monitoring of carbonation of hardened cement pastes using Raman microscopy	2
Trainable segmentation for transmission electron microscope images of inorganic nanoparticles	2
3D microscopy in industrial measurements	2
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	2
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TOC ‐ Issue Information	2
Correction and quantification of MTF in scanning laser microscopy	2
Carbon‐film‐based Zernike phase plates with smooth thickness gradient for phase‐contrast transmission electron microscopy with reduced fringing artefacts	2
In situ quantification of ribosome number by electron tomography	2
Several factors influencing energy‐loss near‐edge structure calculations using Wien2k	2
Accelerating iterative ptychography with an integrated neural network	2
Overcoming the challenges of preserving lipid‐richCannabis sativaL. glandular trichomes for transmission electron microscopy	2
Important aspects of investigating optical excitations in semiconductors using a scanning transmission electron microscope	2
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More than just ‘added value’: The perils of not establishing shared core facilities in resource‐constrained communities	2
Investigation of trapped charges profile for an irradiated insulated material	2
A new approach to etching low‐carbon microalloyed steels to reveal prior austenite grain boundaries and the dual‐phase microstructure	2
Quantifying superimposed protein flow dynamics in live cells using spatial filtering and spatiotemporal image correlation spectroscopy	2
Identifying rotational symmetry axes in Kikuchi patterns by reciprocal vectors	2
Setting up an institutional OMERO environment for bioimage data: Perspectives from both facility staff and users	2
Improving light microscopy training routines with evidence‐based education	2
The fertility tracks of pollen tube in the ovary of Solanum nigrum by three‐dimensional reconstruction	2
A method for the fast and photon‐efficient analysis of time‐domain fluorescence lifetime image data over large dynamic ranges	2
Electrolyte pH dependence of composition, roughness parameters, particle diameter and magnetic features of nanostructured Fe‐Co‐Ni/ITO deposits prepared by electrochemical deposition method	2
Sulphate resistance of low‐clinker engineered cementitious composites examined by MicroXRF imaging	2
Improving Cavalieri volume estimation based on non‐equidistant planar sections: The trapezoidal estimator	2
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Resolution enhancement of total internal reflection microscopy via polarised scattering	2
ModularImageAnalysis (MIA): Assembly of modularised image and object analysis workflows in ImageJ	2
TOC ‐ Issue Information	2
Preface to EMABM (Euroseminar on Microscopy Applied to Building Materials) 2022	2
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Two‐stage particle separation channel based on standing surface acoustic wave	2
Introduction to Festschrift for Professor Tony Wilson	2
Differential phase contrast (DPC) mapping electric fields: Optimising experimental conditions	2
TOC ‐ Issue Information	2
Slags from roasting of antimony ore in the Brioude‐Massiac (France) area used as aggregates: An early example of circular economy	2
Suborganellar resolution imaging for the localisation of human glycosylation enzymes in tobacco Golgi bodies	2
TOC ‐ Issue Information	2

Application of various microscopy techniques to study early‐age and longer‐term behaviour of super sulphated cement microstructure	2
TOC ‐ Issue Information	2
Investigations on lightweight concrete by in situ compression tests using high‐resolution computed tomography (μ‐CT)	2
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Live cell imaging of plant infection provides new insight into the biology of pathogenesis by the rice blast fungus Magnaporthe oryzae	2
A quantitative study of the influence of cement matrix impregnation on yarn pullout strength using combined confocal microscopy and double resin impregnation	1
Reconstruction of 3D greyscale image for reservoir rock from a single image based on pattern dictionary	1
Mass fractal dimension from 2D microscopy images via an aggregation model with variable compactness	1
Quantitative order‐parameter measurement in lattice‐mismatched AlInP using precession electron diffraction	1
Effect of the delayed wash (deglycerolisation) on the red blood cell morphology: Comparison of AFM and optical profilometry	1
TOC ‐ Issue Information	1
Convolutional neural networks for segmentation of FIB‐SEM nanotomography data from porous polymer films for controlled drug release	1
De‐risking transformative microscopy technologies for broad adoption	1
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Methods to expose subsurface objects of interest identified from 3D imaging: The intermediate sample preparation stage in the correlative microscopy workflow	1
Multicriteria assessment of optical coherence tomography using non‐raster trajectories	1
TOC ‐ Issue Information	1
Reconstruction of calcium silicate hydrates using multiple 2D and 3D imaging techniques: Light microscopy, μ‐CT, SEM, FIB‐nT combined with EDX	1
Spatiotemporal visualisation of electrocatalyst/electrolyte interfaces with electrochemical atomic force microscopy: Applications and notes	1
Applications of clinker microscopy for approaching a special case study in cement production	1
3D shape reconstruction of normal and cancerous red blood cells using digital holographic tomography: Combination of angular spectrum method and multiplicative technique	1
Imaging and observation of microcirculation in bowel mucosa using sidestream dark field imaging	1
Neural network fast‐classifies biological images through features selecting to power automated microscopy	1
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Practical strategies for robust and inexpensive imaging of aqueous‐cleared tissues	1
Study of curtaining effect reduction methods in Inconel 718 using a plasma focused ion beam	1
Paste, aggregate, or air? That is the question	1
Calibration by differentiation – Self‐supervised calibration for X‐ray microscopy using a differentiable cone‐beam reconstruction operator	1
Ultrastructural characterisation of young and aged dental enamel by atomic force microscopy	1
X‐ray computed tomography evaluations of additive manufactured multimaterial composites	1
Effect of trypsin concentration on living SMCC‐7721 cells studied by atomic force microscopy	1
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Atomic resolution imaging using a novel, compact and stiff scanning tunnelling microscope in cryogen‐free superconducting magnet	1
QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy	1
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TOC ‐ Issue Information	1
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Evaluation of correlated studies using liquid cell and cryo‐transmission electron microscopy: Hydration of calcium sulphate and the phase transformation pathways of bassanite to gypsum	1
Visualisation of calcium oxalate crystal macropatterns in plant leaves using an improved fast preparation method	1
Method for acquiring accurate coordinates of the source point in electron backscatter diffraction	1
Hard X‐ray spectromicroscopy of Ni‐rich cathodes under in situ liquid heating conditions	1
Exit wave reconstruction of a focal series of images with structural changes in high‐resolution transmission electron microscopy	1
Quantification of cracks in concrete thin sections considering current methods of image analysis	1
Investigation of Rhodnius prolixus head anatomy using microtomography	1
Current opinion on the prospect of mapping electronic orbitals in the transmission electron microscope: State of the art, challenges and perspectives	1
Individual fibre separation in 3D fibrous materials imaged by X‐ray tomography	1
The effects of despeckling filters on pore size measurements in collagen scaffold micro‐CT data	1
Pictures at an exhibition: How to share your imaging data	1
TOC ‐ Issue Information	1
Mechanism of action and side effects of colchicine based on biomechanical properties of cells	1
Modelling 3D supramolecular structure from sparse single‐molecule localisation microscopy data	1
Simultaneous axial and radial swelling studies from 2D stereozoom images of tablet compacts composed of superdisintegrants	1
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Three‐dimensional transfer function of optical microscopes in reflection mode	1
A Lens on the Future: Next Generation Microscopy by Next Generation Microscopists	1
An alignment algorithm using coherent twin boundaries as internal reference in 3D‐EBSD	1
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Method for quantifying the reaction degree of slag in alkali‐activated cements using deep learning‐based electron microscopy image analysis	1
Scalable substrate development for aqueous sample preparation for atom probe tomography	1
Microstructural examination of carbonated 3D‐printed concrete	1
The rise of data‐driven microscopy powered by machine learning	1
The effect of specimen preparation on the nanostructure of SLES aqueous solutions observed by cryo‐TEM	1
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Thickness profiling of electron transparent aluminium alloy foil using convergent beam electron diffraction	1
Unravelling molecular dynamics in living cells: Fluorescent protein biosensors for cell biology	1
Dehydration as alternative sample preparation for soft X‐ray tomography	1
Preparation and topographical studies of various biological specimens using alternate method to critical point drying: Scanning electron microscopy	1
Morphological analysis and grain size distribution of SnO₂ nanoparticles via digital image processing across diverse calcination temperatures	1
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Early hydration of C₄AF with silica fume and its role on katoite composition	0
Introduction to special issue on ‘Microscopy Techniques’	0
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The AMSlide for noninvasive time‐lapse imaging of arbuscular mycorrhizal symbiosis	0
Analysis of the Ag M_4,5 EELS edge to study silver nanoparticle corrosion	0
Optimized dopant imaging for GaN by a scanning electron microscopy	0
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Mitophagy in plants: Emerging regulators of mitochondrial targeting for selective autophagy	0
Recent technical advances in whole slide imaging instrumentation	0
Quantifying whole human hair scalp fibres of varying curl: A micro‐computed tomographic study	0
Correlative light and volume electron microscopy (vCLEM): How community participation can advance developing technologies	0
Advancement and challenges in sample preparation for atomic force microscopy and infrared microscopy for wood‐based materials	0
Effectual accuracy of OCT image retinal segmentation with the aid of speckle noise reduction and boundary edge detection strategy	0
Segmentation of SEM images of multiphase materials: When Gaussian mixture models are accurate?	0
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Surface passivation and functionalisation for mass photometry	0
Quantitative analysis of 3D cellular geometry and modelling of the Arabidopsis embryo	0
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intER‐ACTINg: The structure and dynamics of ER and actin are interlinked	0
Field‐dependent abundances of hydride molecular ions in atom probe tomography of III‐N semiconductors	0
Direct etching of nano/microscale patterns with both few‐layer graphene and high‐depth graphite structures by the raster STM electric lithography in the ambient conditions	0
Surface‐enhanced Raman spectroscopy and ultrastructural analysis of penicillin‐producing Penicillium rubens strains	0
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Model‐based aberration corrected microscopy inside a glass tube	0