Journal of Microscopy

Papers
(The median citation count of Journal of Microscopy is 1. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)
ArticleCitations
Advanced cryo‐tomography workflow developments – correlative microscopy, milling automation and cryo‐lift‐out49
Fluorescence visualization of cellulose and pectin in the primary plant cell wall45
Cryo‐FIB‐lift‐out: practically impossible to practical reality45
QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy31
An introduction to cryo‐FIB‐SEM cross‐sectioning of frozen, hydrated Life Science samples30
Comparing Xe+pFIB and Ga+FIB for TEM sample preparation of Al alloys: Minimising FIB‐induced artefacts30
Gold nanoparticles interacting with synthetic lipid rafts: an AFM investigation25
Three‐dimensional reconstruction of porous polymer films from FIB‐SEM nanotomography data using random forests25
The plant endoplasmic reticulum: an organized chaos of tubules and sheets with multiple functions24
Plasmons in MoS2 studied via experimental and theoretical correlation of energy loss spectra22
Plant Golgi ultrastructure21
Reconstruction of highly porous structures from FIB‐SEM using a deep neural network trained on synthetic images20
Correlia: an ImageJ plug‐in to co‐register and visualise multimodal correlative micrographs19
Semi‐automatic stitching of filamentous structures in image stacks from serial‐section electron tomography18
Effect of aging and rejuvenation on adhesion properties of modified asphalt binder based on AFM18
Mitochondrial morphology and function: two for the price of one!17
Hot deformation behaviour of bimodal sized Al2O3/Al nanocomposites fabricated by spark plasma sintering16
Deep learning‐based automatic inpainting for material microscopic images15
Cryo‐FIB preparation of whole cells and tissue for cryo‐TEM: use of high‐pressure frozen specimens in tubes and planchets15
Bitumen surface microstructure evolution in subzero environments15
pycotem: An open source toolbox for online crystal defect characterization from TEM imaging and diffraction13
Challenges and advances in optical 3D mesoscale imaging12
Complex roles of Rabs and SNAREs in the secretory pathway and plant development: a never‐ending story12
Visualising endocytosis in plants: past, present, and future12
Robust deep learning optical autofocus system applied to automated multiwell plate single molecule localization microscopy12
Analysis of misidentifications in TEM characterisation of organic‐inorganic hybrid perovskite material11
Wavefront‐sensorless adaptive optics with a laser‐free spinning disk confocal microscope11
Using hybrid atomic force microscopy and infrared spectroscopy (AFM‐IR) to identify chemical components of the hair medulla on the nanoscale11
Kikuchi pattern simulations of backscattered and transmitted electrons10
Subcellular structure and behaviour in fungal hyphae10
How innovations in methodology offer new prospects for volume electron microscopy10
A review of high‐resolution microscopic ghost imaging with a low‐dose pseudothermal light10
AutoIHC‐Analyzer: computer‐assisted microscopy for automated membrane extraction/scoring in HER2 molecular markers10
Foldscope as a primary diagnostic tool for oral and urinary tract infections and its effectiveness in oral health education9
Laboratory phase‐contrast nanotomography of unstained Bombus terrestris compound eyes9
Sensitivity of remote focusing microscopes to magnification mismatch9
Light microscopy of the endoplasmic reticulum–membrane contact sites in plants9
Functional organisation of the endomembrane network in the digestive gland of the Venus flytrap: revisiting an old story with a new microscopy toolbox9
Assessment of the impacts of sample preparation on the use of EDS for analysing recycled asphalt blending9
Living on the edge: the role of Atgolgin‐84A at the plant ER–Golgi interface9
Analysis of the nanoscale phase characteristics of bitumen and bitumen in mastics and mixtures via AFM8
Multimodal image reconstruction from tomographic diffraction microscopy data8
A practical criterion for focusing of unstained cell samples using a digital holographic microscope8
Quantitative mapping of high modulus materials at the nanoscale: comparative study between atomic force microscopy and nanoindentation8
Release of insulin granules by simultaneous, high‐speed correlative SICM‐FCM8
Carbonated wollastonite – An effective supplementary cementitious material?8
Classification of childhood medulloblastoma into WHO‐defined multiple subtypes based on textural analysis8
Open‐source deep learning‐based air‐void detection algorithm for concrete microscopic images7
Full‐field strain of regenerated bone tissue in a femoral fracture model7
Microstructural examination of carbonated 3D‐printed concrete7
Fluorescence fluctuation‐based super‐resolution microscopy: Basic concepts for an easy start7
4H‐SiC surface morphology after Al ion implantation and annealing with C‐cap7
Nano‐atomic scale hydrophobic/philic confinement of peptides on mineral surfaces by cross‐correlated SPM and quantum mechanical DFT analysis7
A workflow for 3D‐CLEM investigating liver tissue7
Calibration by differentiation – Self‐supervised calibration for X‐ray microscopy using a differentiable cone‐beam reconstruction operator7
Fast, high‐precision autofocus on a motorised microscope: Automating blood sample imaging on the OpenFlexure Microscope7
Quantification of the bone lacunocanalicular network from 3D X‐ray phase nanotomography images7
Quantitative phase‐mode electrostatic force microscopy on silicon oxide nanostructures7
High‐accuracy, direct aberration determination using self‐attention‐armed deep convolutional neural networks7
Evaluation of correlated studies using liquid cell and cryo‐transmission electron microscopy: Hydration of calcium sulphate and the phase transformation pathways of bassanite to gypsum6
Practical segmentation of nuclei in brightfield cell images with neural networks trained on fluorescently labelled samples6
Convolutional neural networks for segmentation of FIB‐SEM nanotomography data from porous polymer films for controlled drug release6
Analysing neutron radiation damage in YBa2Cu3O7–x high‐temperature superconductor tapes6
Erythrocyte viscoelastic recovery after liver transplantation in a cirrhotic patient affected by spur cell anaemia6
Towards super‐resolved terahertz microscopy for cellular imaging6
Trainable segmentation for transmission electron microscope images of inorganic nanoparticles6
Approaches to training multiclass semantic image segmentation of damage in concrete6
Wear debris released by hip prosthesis analysed by microcomputed tomography6
Workflow for high‐resolution phase segmentation of cement clinker from combined BSE image and EDX spectral data6
Optical comparison between micro‐CT and OCT in imaging of marginal composite adaptation: Observational study6
Reconstructing 3D digital model without distortion for poorly conductive porous rock by nanoprobe‐assisted FIB‐SEM tomography6
Protein secondary structure signatures from energy loss spectra recorded in the electron microscope6
Three‐dimensional transfer function of optical microscopes in reflection mode6
Imaging adult C. elegans live using light‐sheet microscopy6
Correlative imaging using super‐resolution fluorescence microscopy and soft X‐ray tomography at cryogenic temperatures provides a new way to assess virosome solutions for vaccine development6
Real‐time monitoring of carbonation of hardened cement pastes using Raman microscopy6
Measuring the randomness of micro‐ and nanostructure spatial distributions: Effects of scanning electron microscope image processing and analysis5
DeepFRAP: Fast fluorescence recovery after photobleaching data analysis using deep neural networks5
Method for acquiring accurate coordinates of the source point in electron backscatter diffraction5
Individual fibre separation in 3D fibrous materials imaged by X‐ray tomography5
X‐ray tomography for the advancement of laser powder bed fusion additive manufacturing5
Correlative light and volume electron microscopy (vCLEM): How community participation can advance developing technologies5
intER‐ACTINg: The structure and dynamics of ER and actin are interlinked5
Challenges and opportunities for bioimage analysis core‐facilities5
Estimation of an uncertainty budget and performance measurement for a dual‐wavelength Twyman‐Green interferometer5
Mass fractal dimension from 2D microscopy images via an aggregation model with variable compactness5
Segmentation, retardation and mass approximation of birefringent particles on a standard light microscope5
Optimizing and applying high‐resolution, in‐line laboratory phase‐contrast X‐ray imaging for low‐density material samples5
Local Kikuchi band detection in electron backscatter diffraction patterns for enhanced pattern indexing5
Two‐stage particle separation channel based on standing surface acoustic wave5
A method for reproducible high‐resolution imaging of 3D cancer cell spheroids5
Stereometric and fractal analysis of granulated silver films used in thin‐film hybrid structures5
PUMA – An open‐source 3D‐printed direct vision microscope with augmented reality and spatial light modulator functions5
A method for direct imaging of xz cross‐sections of fluorescent samples5
An x‐ray microanalytical method for measuring in vivo element and water concentrations, relating to osmoregulation, in cells and tissues of the posterior eye4
Atomic force microscopy as an imaging tool to study the bio/nonbio complexes4
Second harmonic generation microscopy using pixel reassignment4
Imaging error compensation method for through‐focus scanning optical microscopy images based on deep learning4
Simple automation of SEM‐EDS spectral maps analysis with Python and the edxia framework4
AFM and Raman study of graphene deposited on silicon surfaces nanostructured by ion beam irradiation4
Automated tracking of S. pombe spindle elongation dynamics4
A through‐focus scanning optical microscopy dimensional measurement method based on deep‐learning classification model4
Digital scanned laser light‐sheet fluorescence lifetime microscopy with wide‐field time‐gated imaging4
Evaluation and application of a new scintillator‐based heat‐resistant back‐scattered electron detector during heat treatment in the scanning electron microscope4
Quantitative analysis of backscattered‐electron contrast in scanning electron microscopy4
Time‐lapse visualization of shrinking soot in diesel particulate filter during active‐regeneration using field emission scanning electron microscopy4
Optimizing the SEM specimen preparation method for accurate microanalysis of carbon nanotube/nanocluster hybrids4
Elemental mapping of labelled biological specimens at intermediate energy loss in an energy‐filtered TEM acquired using a direct detection device4
The relation between the average diameter of CNTs on Ni–Cu @ a‐C:H catalyst with the optical absorption edge and the optical dispersion parameters4
Determination of the refractive index and wavelength‐dependent optical properties of few‐layer CrCl within the Fresnel formalism4
Quantitative SEM characterisation of ceramic target prior and after magnetron sputtering: a case study of aluminium zinc oxide4
Automatic three‐dimensional segmentation of mouse embryonic stem cell nuclei by utilising multiple channels of confocal fluorescence images4
X‐ray microtomosynthesis of unstained pathology tissue samples4
Anion intercalated graphite: a combined electrochemical and tribological investigation by in situ AFM3
Investigation of cross‐sectional image analysis method to determine the blending ratio of polyester/cotton yarn3
In‐situ SEM observation of grain growth in the austenitic region of carbon steel using thermal etching3
The effects of measurement parameters on the cancerous cell nucleus characterisation by atomic force microscopy in vitro3
Phase determination in dual phase steels via HREBSD‐based tetragonality mapping3
Method for quantifying the reaction degree of slag in alkali‐activated cements using deep learning‐based electron microscopy image analysis3
Thickness profiling of electron transparent aluminium alloy foil using convergent beam electron diffraction3
Comparison of cell volume measurements by fluorescence and absorption exclusion microscopy3
Laser‐based sample preparation for high‐resolution X‐ray‐computed tomography of glasses and glass ceramics3
Nanoscale morphology and fractal analysis of TiO2 coatings on ITO substrate by electrodeposition3
Integrated opto‐mechanical cantilever sensor with a rib waveguide3
Made to measure: An introduction to quantifying microscopy data in the life sciences3
Automated tilt compensation in acoustic microscopy3
X‐ray computed tomography evaluations of additive manufactured multimaterial composites3
Exploring confocal laser scanning microscopy (CLSM) and fluorescence staining as a tool for imaging and quantifying traces of marine microbioerosion and their trace‐making microendoliths3
Metal configurations on 2D materials investigated via atomic resolution HAADF stem3
Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland3
Assessing conformal thin film growth under nonstochastic deposition conditions: application of a phenomenological model of roughness replication to synthetic topographic images3
Automated particle recognition for engine soot nanoparticles3
In situ liquid SEM imaging analysis revealing particle dispersity in aqueous solutions3
Morphological analysis and grain size distribution of SnO2 nanoparticles via digital image processing across diverse calcination temperatures3
Real‐Time Optical Vascular Imaging, a new method for the diagnosis and monitoring of oral diseases3
Depth estimation method of surface of micropart in microassembly space based on microscopic vision tomographic scanning images3
Reconstruction of calcium silicate hydrates using multiple 2D and 3D imaging techniques: Light microscopy, μ‐CT, SEM, FIB‐nT combined with EDX3
3D differential interference contrast microscopy using polarisation‐sensitive tomographic diffraction microscopy3
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness3
ToTEM: A software for fast TEM image simulation3
3
The incorporation of Cu into the clinker phases3
Growth of C‐S‐H phases on different metallic surfaces2
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view2
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens2
Analysis of 3D elemental distribution in nanomaterials: Towards higher throughput and dose efficiency2
Direct etching of nano/microscale patterns with both few‐layer graphene and high‐depth graphite structures by the raster STM electric lithography in the ambient conditions2
A case study of distress mechanism(s) in a concrete structure foundation in the saturated zone and above the saturated zone2
High‐resolution optical microscopy for characterising microstructural deformation in microtensile testing2
Establishing a reference focal plane using beads for trypan‐blue‐based viability measurements2
Quantification of cracks in concrete thin sections considering current methods of image analysis2
Identifying rotational symmetry axes in Kikuchi patterns by reciprocal vectors2
openFrame: A modular, sustainable, open microscopy platform with single‐shot, dual‐axis optical autofocus module providing high precision and long range of operation2
A multi‐technique study of corrosion products at the steel–concrete interface under two exposure conditions2
The challenges and opportunities of open‐access microscopy facilities2
First visualisation of bacterial biofilms in 3D porous media with neutron microtomography without contrast agent2
Towards real‐time STEM simulations through targeted subsampling strategies2
Site‐specific angular dependent determination of inelastic mean free path of 300 keV electrons in GaN nanorods2
Marked point process analysis of epidermal nerve fibres2
Segmentation of SEM images of multiphase materials: When Gaussian mixture models are accurate?2
ModularImageAnalysis (MIA): Assembly of modularised image and object analysis workflows in ImageJ2
Overcoming the challenges of preserving lipid‐rich Cannabis sativa L. glandular trichomes for transmission electron microscopy2
A new approach to etching low‐carbon microalloyed steels to reveal prior austenite grain boundaries and the dual‐phase microstructure2
Evaluation of classification methods for identifying multiwalled carbon nanotubes collected on mixed cellulose ester filter media2
Adsorption of PCE in alkali‐activated materials analysed by fluorescence microscopy2
Correction and quantification of MTF in scanning laser microscopy2
Neural network fast‐classifies biological images through features selecting to power automated microscopy2
Effect of trypsin concentration on living SMCC‐7721 cells studied by atomic force microscopy2
Perspective of fibre‐optical microendoscopy with microlenses2
In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation2
Ultrastructural characterisation of young and aged dental enamel by atomic force microscopy2
Reconstruction of 3D greyscale image for reservoir rock from a single image based on pattern dictionary2
Experimental test of the geometric model of image formation in bright‐field microscopy2
In memoriam – Hans Jørgen Gottlieb Gundersen2
Combining atomic force microscopy with complementary techniques for multidimensional single‐cell analysis2
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos2
Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray2
Morphological and Elastic Transition of Polystyrene Adsorbed Layers on Silicon Oxide2
What is the structure of our infrastructure? A review of UK light microscopy facilities2
Poly‐L‐lysine/hyaluronan nanocarriers as a novel nanosystem for gene delivery2
Automatic detection of Kikuchi bands based on Radon transform and PPHT1
1
Unconvincing evidence that Beale's Mathematician is Robert Hooke1
Comments on Dr Whittaker's letter and the article1
Optimising adjacent membrane segmentation and parameterisation in multicellular aggregates by piecewise active contours1
Optimized dopant imaging for GaN by a scanning electron microscopy1
Mesoscale standing wave imaging1
Improving light microscopy training routines with evidence‐based education1
Incorporation of antimony‐bearing mining wastes into clinker Portland raw feed: The difficulty of Sb analysis in calcium silicates1
Advanced characterisation of 3D structure and porosity of ordinary portland cement (OPC) mortar using plasma focused ion beam tomography and X‐ray computed tomography1
A method for the fast and photon‐efficient analysis of time‐domain fluorescence lifetime image data over large dynamic ranges1
Outreach and art – attracting new audiences and encouraging others into sciences1
Carbon‐film‐based Zernike phase plates with smooth thickness gradient for phase‐contrast transmission electron microscopy with reduced fringing artefacts1
An open‐hardware sample mounting solution for inverted light‐sheet microscopes with large detection objective lenses1
High‐resolution X‐ray tomographic workflow to investigate the stress distribution in vitreous enamel steels1
Addressing multiscale microbial challenges using the Mesolens1
Towards quantification of doping in gallium arsenide nanostructures by low‐energy scanning electron microscopy and conductive atomic force microscopy1
Bridging imaging users to imaging analysis – A community survey1
Estimating microstructural feature distributions from image data using a Bayesian framework1
Mitophagy in plants: Emerging regulators of mitochondrial targeting for selective autophagy1
Practical strategies for robust and inexpensive imaging of aqueous‐cleared tissues1
Assessment of the self‐healing capacity of cementitious materials through active thin sections1
A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy1
Towards artefact‐free AFM image presentation and interpretation1
The role of CuO on the microstructure and phase composition of SO3‐activated clinker1
Scanning electron microscopy and energy dispersive spectrometry analyses of ancient bronze artefacts of the Urartian period from Yegheghnadzor region, Armenia1
A bird's eye view on microscopy1
Effectual accuracy of OCT image retinal segmentation with the aid of speckle noise reduction and boundary edge detection strategy1
Visualising the effect of freezing on the vascular system of wheat in three dimensions by in‐block imaging of dye‐infiltrated plants1
Pairwise interaction Markov model for 3D epidermal nerve fibre endings1
The effect of specimen preparation on the nanostructure of SLES aqueous solutions observed by cryo‐TEM1
Implications of gnomonic distortion on electron backscatter diffraction and transmission Kikuchi diffraction1
Microstructural evolution during short heat treatment of constrained groove pressed Cu‐5%Zn alloy1
Comparison of microstructural imaging of the root canal isthmus using propagation‐based X‐ray phase‐contrast and absorption micro‐computed tomography1
1
Differential phase contrast (DPC) mapping electric fields: Optimising experimental conditions1
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells1
L's approach: illumination pattern estimation technique for optical microscopy1
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)1
Expansion microscopy: A revolution in diagnostic pathology1
The structure of the eggshell and eggshell membranes of Crocodylus niloticus1
STED nanoscopy – A novel way to image the pore space of geological materials1
The effects of despeckling filters on pore size measurements in collagen scaffold micro‐CT data1
‘Branded’ microscopy core facilities – Mutually beneficial partnerships between academia and industry1
CellProfiler plugins – An easy image analysis platform integration for containers and Python tools1
Facet type determination based on combined atomic force microscopy and electron backscatter diffraction1
1
Dynamic range and background filtering in raster image correlation spectroscopy1
Important aspects of investigating optical excitations in semiconductors using a scanning transmission electron microscope1
Wear mechanisms description in nanoscale by SEM/TEM of multilayer Zr/ZrN coatings in dependence on phases ratio1
Material characteristics of historic scagliola interiors in Vienna: A view through the microscope1
Electrolyte pH dependence of composition, roughness parameters, particle diameter and magnetic features of nanostructured Fe‐Co‐Ni/ITO deposits prepared by electrochemical deposition method1
The restriction of calcium influx in metaphase and post‐metaphase stages of cell division revealed by imaging secondary ion mass spectrometry (SIMS)1
Relations between electron yield and temperature rise under low‐energy electron irradiation for Au element1
Image quality evaluation for FIB‐SEM images1
Surface‐enhanced Raman spectroscopy and ultrastructural analysis of penicillin‐producing Penicillium rubens strains1
Exploring the microstructure of hydrated collagen hydrogels under scanning electron microscopy1
The evolution of indium precipitation in gallium focused ion beam prepared samples of InGaAs/InAlAs quantum wells under electron beam irradiation1
The dissociation of (a+c) misfit dislocations at the InGaN/GaN interface1
Physical properties and photocatalytic activity of Cr‐doped TiO2 nanoparticles1
The election of women as Fellows of the Royal Microscopical Club1
Multislice image simulations of sheared needle‐like precipitates in an Al‐Mg‐Si alloy1
Field‐dependent abundances of hydride molecular ions in atom probe tomography of III‐N semiconductors1
Several factors influencing energy‐loss near‐edge structure calculations using Wien2k1
Theoretical model and experimental study on environmental dissipation mechanism of tapping mode atomic force microscope1
0.028754949569702