Journal of Microscopy

Article	Citations
Study on line‐scan profile for a trapezoid line under varying sample temperatures through Monte–Carlo simulation	41
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Leveraging modified ex situ tomography data for segmentation of in situ synchrotron X‐ray computed tomography	28
A method for crystallographic mapping of an alpha‐beta titanium alloy with nanometre resolution using scanning precession electron diffraction and open‐source software libraries	24
High‐speed 4‐dimensional scanning transmission electron microscopy using compressive sensing techniques	22
Seeing clearly – Plant anatomy through Katherine Esau's microscopy lens	22
Pairwise interaction Markov model for 3D epidermal nerve fibre endings	22
Innovating in a bioimaging core through instrument development	21
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Self‐pressurised rapid freezing at arbitrary cryoprotectant concentrations	20
A practical guide to bioimaging research data management in core facilities	20
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Analogue optical pattern recognition for cross‐correlational CNN	17
Quantification of cell shape, intracellular flows and transport based on DIC object detection and tracking	15
High‐pressure freezing of mechanically stretched cells	15
Towards affordable biomedical imaging: Recent advances in low‐cost, high‐resolution optoacoustic microscopy	15
Seven‐layer analysis model of an optical waveguide excitation fluorescence microscopy	15
Application of STEM tomography to investigate smooth ER morphology under stress conditions	15
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Virtual dissection of Aedes aegypti mosquito using phase‐contrast synchrotron microtomography	14
Application of Noise2Inverse and adaptation (Noise2Phase) to single‐mask x‐ray phase contrast micro‐computed tomography	14
In‐depth polarisation resolved SHG microscopy in biological tissues using iterative wavefront optimisation	13
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A method for extraction of exosomes from breast tumour cells and characterisation by transmission electron microscopy	13
ApoNecV: A macro for cell death type differentiation	13
Stability of electron ptychography at low electron dose	13
Multi‐foci parallelised RESOLFT nanoscopy in an extended field‐of‐view	13
Microscopy at a glance: New poster article series exploring the intersection of art, science and imaging	12
Subcellular localisation and identification of single atoms using quantitative scanning transmission electron microscopy	12
Subsurface phase imaging of tapping‐mode atomic force microscopy at phase resonance	12
Characterisation of bond between cement paste and steel fibres with different surface roughness using SEM	11
Ptychography: A brief introduction	11
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Use of Melinex film for flat embedding tissue sections in LR White	11
Multicamera simultaneous total internal reflection and interference reflection microscopy	10
CellPhePy: A python implementation of the CellPhe toolkit for automated cell phenotyping from microscopy time‐lapse videos	10
Surpassing light inhomogeneities in structured‐illumination microscopy with FlexSIM	10
Development of a deep learning method for phase retrieval image enhancement in phase contrast microcomputed tomography	10
Single‐shot differential phase contrast microscopy using ring‐shaped polarisation multiplexing illumination	10
Repair effect of Centella asiatica (L.) extract on damaged HaCaT cells studied by atomic force microscopy	9
Investigation of the interface of fungal mycelium composite building materials by means of low‐vacuum scanning electron microscopy	9
Local spatial distribution of J‐aggregates in molecularly oriented bisazo‐dye thin films	9
Using the traditional microscope for mineral grain orientation determination: A prototype image analysis pipeline for optic‐axis mapping (POAM)	9
Automated Euler number of the alveolar capillary network based on deep learning segmentation with verification by stereological methods	9
Challenges and advances in optical 3D mesoscale imaging	8
Traction force generation in Plasmodium sporozoites is modulated by a surface adhesin	8
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Multiscale characterisation of cellulose nanofibril networks using three 3D imaging methods	8
Morphological and structural analysis of iron‐rich porcelains excavated from the Jian kiln site of Song dynasty	8
Flexible implementation of modulated localisation microscopy based on DMD	8
ToTEM: A software for fast TEM image simulation	7
Unveiling the limits of precision in iterative MINFLUX	7
Fluorescence microscopic investigation of PCE superplasticiser adsorption in calcined clay blended cement	7
TOC ‐ Issue Information	7
Correction to “Image quality evaluation for FIB‐SEM images”	7
Microtexture analysis of copper‐doped iron oxide thin films prepared by air pneumatic spray	7
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Primed conversion: The emerging player of precise and nontoxic photoconversion	6
TUNA‐EBSD‐CL correlative multi‐microscopy study, on the example of Cu(In,Ga)S2 solar cell absorber	6
Correlation steered scanning with spiral scanning path for AFM to correct image distortion with real‐time compensation	6
Simple Python‐based methods for analysis and drift‐correction of STM images	6
Response to Adler and Parmryd	6
Automatic identification and quantification of surface nanoscale pore morphology in coals of different ranks based on AFM, SEM and LP‐N 2 GA	6
A perspective of fluorescence microscopy for cellular structural biology with EGFR as witness	6
TOC ‐ Issue Information	6
Correction to ‘Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live Zebrafish embryos’	6
Microscopic investigation of the optical and morphological properties of iPP/TiO2 nanocomposite fibres using computed tomography technique	6
Introduction to the Festschrift for Paul Walther	6
Open‐source hardware‐ and software‐based cryomicroscopy system for investigation of phase transitions in cryobiological research	6
TOC ‐ Issue Information	6
A Python tool to determine the thickness of the hydrate layer around clinker grains using SEM‐BSE images	6
Quantitative analysis of human umbilical vein endothelial cell morphology and tubulogenesis	6

Detecting charge transfer at defects in 2D materials with electron ptychography	5
Confocal and multiphoton microscopy: A selective review	5
Determining bismuth content in GaAsBi alloys by energy‐dispersive X‐ray spectroscopy: A case study with multiple sets of k *‐factors for analytical trans	5
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Advances in high‐resolution cryo‐volume electron microscopy (cvEM) imaging for unicellular and multicellular organisms	5
Correlation of near‐field optical microscopy and tip‐assisted photoluminescence	5
Characterisation and correction of polarisation effects in fluorescently labelled fibres	5
From observation to understanding: A multi‐agent framework for smart microscopy	5
Cryo‐SEM and large volume FIB‐SEM of Arabidopsis cotyledons: Degradation of lipid bodies, biogenesis of glyoxysomes and reorganisation of organelles during germination	5
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An automated slide scanning system for membrane filter imaging in diagnosis of urogenital schistosomiasis	5
Handheld cross‐polarised microscope for imaging individual pigmented cells in human skin in vivo	5
A fluorescence lifetime separation approach for FLIM live‐cell imaging	5
A detailed protocol for open and low‐cost six‐plex immunofluorescence (Flex‐6 mIHF) with a proof‐of‐concept study on breast cancer tissue	5
The effect of the combined addition of copper, lithium and sulphur on the formation of Portland cement clinker	5
Contrast by electron microscopy in thick biological specimens	5
TOC ‐ Issue Information	5
Comparison of holotomographic microscopy and coherence‐controlled holographic microscopy	5
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Made to measure: An introduction to quantifying microscopy data in the life sciences	5
Non‐fitting FLIM‐FRET facilitates analysis of protein interactions in live zebrafish embryos	5
Comparative study on the Ru ware, Ru‐type ware of Qingliangsi kiln and celadon of Zhanggongxiang kiln	5
Introduction to Festschrift for Professor Tony Wilson	4
Single‐molecule validation and optimised protocols for the use of secondary nanobodies in multiplexed immunoassays	4
Automated particle recognition for engine soot nanoparticles	4
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Quantification of surface grinding during the sample preparation of cementitious materials by optical profilometry	4
Reduced order modelling of air‐puff test for corneal material characterisation	4
The structure of the eggshell and eggshell membranes of Crocodylus niloticus	4
Integrated approaches for multiscale mitochondrial structure and function analysis	4
Image quality evaluation for FIB‐SEM images	4
From cells to pixels: A decision tree for designing bioimage analysis pipelines	4
Diversity under the microscope: Lessons for building belonging in interdisciplinary spaces from the Women in Imaging + Industry bootcamp	4
Comparison of the SMLM technique and the MSSR algorithm in confocal microscopy for super‐resolved imaging of cellulose fibres	4
Comparison of the effects of AgNPs on the morphological and mechanical characteristics of cancerous cells	4
Estimating microstructural feature distributions from image data using a Bayesian framework	4
PerfectlyAverage: A classical open‐source software method to determine the optimal averaging parameters in laser scanning fluorescence microscopy	4
Background removal in fluorescence microscopy images based on baseline estimation	4
Closer to the native state: Sandwich freezing and freeze‐substitution of microorganisms, cultured cells, and animal and plant tissues for electron microscopy	4
Microstructural characterisation of polycrystalline ice with an etch‐pitting replication method	4
Staying on track – Keeping things running in a high‐end scientific imaging core facility	4
Diagnostic electron microscopy in human infectious diseases – Methods and applications	4
Quantifying phase magnitudes of open‐source focused‐probe 4D‐STEM ptychography reconstructions	4
Data analysis in imaging (DAIM) – A new RMS science section	3
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Improving Cavalieri volume estimation based on non‐equidistant planar sections: The trapezoidal estimator	3
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Overcoming the challenges of preserving lipid‐richCannabis sativaL. glandular trichomes for transmission electron microscopy	3
Clinker based on calcium looped meals from the Cleanker Project	3
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Revisiting PSF models: Unifying framework and high‐performance implementation	3
Fourier ptychography microscopy for digital pathology	3
Quantifying superimposed protein flow dynamics in live cells using spatial filtering and spatiotemporal image correlation spectroscopy	3
TOC ‐ Issue Information	3
Fast Gaussian fitting peak extraction for confocal microscopy	3
Strengthening research infrastructure through local networks of light microscopy facilities	3
ModularImageAnalysis (MIA): Assembly of modularised image and object analysis workflows in ImageJ	3
TOC ‐ Issue Information	3
Several factors influencing energy‐loss near‐edge structure calculations using Wien2k	3
Surface visualisation of bacterial biofilms using neutral atom microscopy	3
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Improving light microscopy training routines with evidence‐based education	3
A novel experimental platform to monitor solid/water interfaces under freeze–thaw cycles	3
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Microscopical palynology: Birch woodland expansion and species hybridisation coincide with periods of climate warming during the Holocene epoch in Iceland	3
TOC ‐ Issue Information	3
Multimodal optical microscopy defect detection method for indium bump arrays based on multi‐scale Demons deformation field difference	3
A quantitative irradiation microscopy platform for in situ observation of living cells with subcellular resolution under radiation conditions	3
Background Remover – An effective tool for processing noisy microscopy images	3
TOC ‐ Issue Information	3
Ptychographic analysis of human bone marrow‐derived mesenchymal stem cell morphology: The impact of cell senescence	3
Setting up an institutional OMERO environment for bioimage data: Perspectives from both facility staff and users	3
Optimisation of freeze substitution protocols for the examination of malaria parasite structure by volumetric electron microscopy	3
Trainable segmentation for transmission electron microscope images of inorganic nanoparticles	3
Slags from roasting of antimony ore in the Brioude‐Massiac (France) area used as aggregates: An early example of circular economy	2
Visualisation and differentiation of binder components in hard carbon composite anodes by osmium tetroxide and uranyl acetate staining	2

More than just ‘added value’: The perils of not establishing shared core facilities in resource‐constrained communities	2
Applications of clinker microscopy for approaching a special case study in cement production	2
Ultrastructural expansion microscopy reveals unexpected levels of glycosome heterogeneity in African trypanosomes	2
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Study of curtaining effect reduction methods in Inconel 718 using a plasma focused ion beam	2
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Optimisation of EDS quantitative f‐ratio method via ZAF correction	2
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Pictures at an exhibition: How to share your imaging data	2
Electrolyte pH dependence of composition, roughness parameters, particle diameter and magnetic features of nanostructured Fe‐Co‐Ni/ITO deposits prepared by electrochemical deposition method	2
Calibration by differentiation – Self‐supervised calibration for X‐ray microscopy using a differentiable cone‐beam reconstruction operator	2
Resolution enhancement of total internal reflection microscopy via polarised scattering	2
Effect of the delayed wash (deglycerolisation) on the red blood cell morphology: Comparison of AFM and optical profilometry	2
Differential phase contrast (DPC) mapping electric fields: Optimising experimental conditions	2
TOC ‐ Issue Information	2
Application of various microscopy techniques to study early‐age and longer‐term behaviour of super sulphated cement microstructure	2
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Morphological analysis and grain size distribution of SnO2 nanoparticles via digital image processing across diverse calcination temperatures	2
A new approach to etching low‐carbon microalloyed steels to reveal prior austenite grain boundaries and the dual‐phase microstructure	2
MAM‐UNet: A multiple attention mechanism UNet for the eutectic segmentation of superalloys	2
Mechanism of action and side effects of colchicine based on biomechanical properties of cells	2
TOC ‐ Issue Information	2
Commentary on critique and rebuttal of ‘On the pixel selection criterion for the calculation of the Pearson's correlation coefficient in fluorescence microscopy’	2
Paste, aggregate, or air? That is the question	2
Practical strategies for robust and inexpensive imaging of aqueous‐cleared tissues	2
The fertility tracks of pollen tube in the ovary of Solanum nigrum by three‐dimensional reconstruction	2
In situ quantification of ribosome number by electron tomography	2
TOC ‐ Issue Information	2
Ultrastructural characterisation of young and aged dental enamel by atomic force microscopy	2
A Lens on the Future: Next Generation Microscopy by Next Generation Microscopists	2
Carbon‐film‐based Zernike phase plates with smooth thickness gradient for phase‐contrast transmission electron microscopy with reduced fringing artefacts	2
TOC ‐ Issue Information	2
3D microscopy in industrial measurements	2
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Investigations on lightweight concrete by in situ compression tests using high‐resolution computed tomography (μ‐CT)	2
Modelling 3D supramolecular structure from sparse single‐molecule localisation microscopy data	2
Sulphate resistance of low‐clinker engineered cementitious composites examined by MicroXRF imaging	2
Preparation and topographical studies of various biological specimens using alternate method to critical point drying: Scanning electron microscopy	2
Live cell imaging of plant infection provides new insight into the biology of pathogenesis by the rice blast fungus Magnaporthe oryzae	2
An overview of reliable and representative DVC measurements for musculoskeletal tissues	2
Suborganellar resolution imaging for the localisation of human glycosylation enzymes in tobacco Golgi bodies	2
Unravelling molecular dynamics in living cells: Fluorescent protein biosensors for cell biology	2
Accelerating iterative ptychography with an integrated neural network	2
Important aspects of investigating optical excitations in semiconductors using a scanning transmission electron microscope	2
A method for the fast and photon‐efficient analysis of time‐domain fluorescence lifetime image data over large dynamic ranges	2
Simultaneous axial and radial swelling studies from 2D stereozoom images of tablet compacts composed of superdisintegrants	2
A detailed protocol for expansion microscopy of Paracentrotus lividus embryos and larvae: Incorporating decalcification for improved imaging	1
Thickness measurement of cell walls of closed‐cell foams in micro‐CT images	1
EBSD patterns simulating multilayer twins based on dynamical theory of electron diffraction	1
Substrate‐related optical activity in monolayer WS2${\rm WS}_2$ and MoSe2${\rm MoSe}_2$: A tip‐enhanced Raman spectroscopy study	1
Visualisation of calcium oxalate crystal macropatterns in plant leaves using an improved fast preparation method	1
Physical properties and photocatalytic activity of Cr‐doped TiO2 nanoparticles	1
Thickness profiling of electron transparent aluminium alloy foil using convergent beam electron diffraction	1
Multicriteria assessment of optical coherence tomography using non‐raster trajectories	1
An alignment algorithm using coherent twin boundaries as internal reference in 3D‐EBSD	1
De‐risking transformative microscopy technologies for broad adoption	1
Incorporation of antimony‐bearing mining wastes into clinker Portland raw feed: The difficulty of Sb analysis in calcium silicates	1
Comparison of two Monte Carlo approaches for homogeneous bulk samples	1
The microstructure and thermal stability of the two‐phase amorphous melt‐spun alloys ejected from a double‐chamber crucible	1
TOC ‐ Issue Information	1
The mutual influence of microtubules and the cortical ER on their coordinated organisation	1
Hierarchical reconstruction of three‐dimensional porous media from a single two‐dimensional image with multiscale entropy statistics	1
Running an electron microscopy core facility	1
Model‐free machine learning‐based 3D single molecule localisation microscopy	1
Expansion microscopy: A revolution in diagnostic pathology	1
A novel morphological descriptor for multiphase microstructure reconstruction	1
TOC ‐ Issue Information	1
Towards super‐resolved terahertz microscopy for cellular imaging	1
The effect of specimen preparation on the nanostructure of SLES aqueous solutions observed by cryo‐TEM	1
Analytical solution of the classical Rayleigh length definition, including truncation at arbitrary values	1
TOC ‐ Issue Information	1
A hybrid model for structured illumination microscopy reconstruction using attention mechanism and deep Laplacian pyramid network with Fourier loss	1
Wear mechanisms description in nanoscale by SEM/TEM of multilayer Zr/ZrN coatings in dependence on phases ratio	1
Introduction to special issue ‘12th International Botanical Microscopy Meeting’	1
Crossing scales and eras: Correlative multimodal microscopy heritage studies	1
Compressive electron backscatter diffraction imaging	1
LiveLattice: Real‐time visualisation of tilted light‐sheet microscopy data using a memory‐efficient transformation algorithm	1
Cassini ovals for robust mitosis detection in cellular imaging	1
Introduction to women in microscopy: Volume 2	1
Cements and concretes materials characterisation using machine‐learning‐based reconstruction and 3D quantitative mineralogy via X‐ray microscopy	1
Modulation of host cell membrane biophysics dynamics by Neospora caninum : A study using LAURDAN fluorescence with hyperspectral imaging and phasor analy	1
Scalable substrate development for aqueous sample preparation for atom probe tomography	1
Current opinion on the prospect of mapping electronic orbitals in the transmission electron microscope: State of the art, challenges and perspectives	1
Bridging imaging users to imaging analysis – A community survey	1
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A workflow for semi‐automated volume correlative light microscopy and transmission electron tomography	1
Multimodal optical mesoscopy reveals the quantity and spatial distribution of Gram‐positive biofilms in ex vivo tonsils	1
Introduction to the special issue	1
Spatial light modulation for interferometric scattering microscopy	1
Imaging malaria parasites across scales and time	1
Deep learning for quantifying spatial patterning and formation process of early differentiated human‐induced pluripotent stem cells with micropattern images	1