Journal of Medical Microbiology

Article	Citations
An end-point multiplex RT-PCR for SARS-CoV-2, Influenza A and B detection, including simultaneous RNAse P amplification: a timely tool for more accessible differential diagnosis	44
A nanoluciferase-tagged Schmallenberg virus (SBV): an efficient tool for measuring and tracking viral infection dynamics	37
Matrix-assisted laser desorption/ionization-time of flight MS as a tool for clonal discrimination in Streptococcus dysgalactiae subsp. equisimilis	37
Limitations of antimicrobial agent choice based on MIC value against Pseudomonas aeruginosa	32
A viable but nonculturable state of Mycobacterium avium in response to macrolide antibiotics: a recipe for relapses?	32
Targeted detection of Helicobacter pylori resistance to clarithromycin and levofloxacin using single-cell Raman spectroscopy	29
Evaluation of anti-biofilm effect of antimicrobial sonodynamic therapy-based periodontal ligament stem cell-derived exosome-loaded kojic acid on Enterococcus faecalis biofilm	28
Evaluation of the World Health Organization Global Invasive Bacterial Vaccine-Preventable Disease (IB-VPD) Surveillance Network’s Laboratory External Quality Assessment Programme, 2014–2019	27
Clinical evaluation of two commercial PCR kits for the detection of nonviral sexually transmitted infections	25
Identification of consensus head and neck cancer-associated microbiota signatures: a systematic review and meta-analysis of 16S rRNA and The Cancer Microbiome Atlas datasets	24
Changes in serum amyloid A, plasma high-density lipoprotein cholesterol and apolipoprotein A-I as useful biomarkers for Mycobacterium tuberculosis infection	24
Class 1 integrons in clinical and swine industry isolates of Salmonella Typhimurium from Colombia, dating 1997 to 2017	24
Corrigendum: Fosfomycin resistance in extended-spectrum beta-lactamase producing Escherichia coli isolated from urinary tract-infected patients in a tertiary care hospital	23
Extended-spectrum beta-lactamases: definition, history, an update on their genetic environment and detection methods	22
Corrigendum: Genomic characterization of Haemophilus influenzae harbouring an exogenous resistance gene	21
Gut microbiota associated with the mitigation effect of synbiotics on adverse events of neoadjuvant chemotherapy in patients with esophageal cancer: A retrospective exploratory study	21
Novel automated antifungal susceptibility testing system for yeasts based on dual-detection algorithm of turbidimetry and colorimetry	21
Effector genes of type III secretion system and biofilm formation in virulent Pseudomonas aeruginosa isolates carrying bla KPC-2 and bla PDC-5 genes in hospital environment	20
Erratum: The Ebola virus – going beyond the bleeding edge	20
Fosfomycin resistance in extended-spectrum beta-lactamase producing Escherichia coli isolated from urinary tract-infected patients in a tertiary care hospital	19
Technologies to decontaminate bacterial biofilm on hospital surfaces: a potential new role for cold plasma?	19
Sertraline has in vitro activity against both mature and forming biofilms of different Candida species	19
Utility of in-house and commercial PCR assay in diagnosis of Covid-19 associated mucormycosis in an emergency setting in a tertiary care center	18
Erratum: Dysbiosis–epigenetics–immune system interaction and ageing health problems	18
CXCR2 perturbation promotes Staphylococcus aureus implant-associated infection	17

Targeted ‘knock out’ therapy with a combination antimicrobial regimen restores treatment options in the management of extensively drug-resistant carbapenemase-producing organisms	17
Mechanism of azole resistance in Candida glabrata isolates from India: clinical vs. induced perspectives	17
MARGINAL NOTES, January 2026. The quest for proto-sepsis	16
Clinical and public health implications of increasing notifications of LEE-negative Shiga toxin-producing Escherichia coli in England, 2014–2022	16
In vitro and in silico assessment of anti-biofilm and anti-quorum sensing properties of 2,4-Di-tert butylphenol against Acinetobacter baumannii	15
Delays to treatment initiation and emergence of drug resistance among new adult tuberculosis patients in Tigray, Northern Ethiopia	14
Protein expression profiling, in silico classification and pathway analysis of cariogenic bacteria Streptococcus mutans under bacitracin stress conditions	14
Antifungal activity and potential mechanism of action of Huangqin decoction against Trichophyton rubrum	14
Effects of novel organoantimony compounds on the fungal pathogen Cryptococcus neoformans	14
The lingering legacy of one letter in antimicrobial susceptibility testing	14
Introducing biomarkers for invasive fungal disease in haemato-oncology patients: a single-centre experience	13
Genomic insights into extended-spectrum β-lactamase- and plasmid-borne AmpC-producing Escherichia coli transmission between humans and livestock in rural Cambodia	13
Genetic characteristics of azithromycin-resistant Neisseria gonorrhoeae collected in Hyogo, Japan during 2015–2019	13
SARS-CoV-2 in outdoor air following the third wave lockdown release, Portugal, 2021	13
Development of multiplex real-time PCR for detection of clarithromycin resistance genes for the Mycobacterium abscessus group	13
MARGINAL NOTES, June 2023 – running on empty	13
Ozone water enema activates SIRT1-Nrf2/HO-1 pathway to ameliorate gut dysbiosis in mice receiving COVID-19 patient-derived faecal microbiota	12
The emerging threat of Japanese encephalitis in Australia: is it the time to worry?	12
Genetic association of gut microbiota with osteoarthritis: a multivariable Mendelian randomization study considering medication use	12
Concordance between upper and lower airway microbiota in children with cystic fibrosis	12
Chronic Strongyloides stercoralis infection in Fijian migrants to the UK	12
Lessons learned: drive-through COVID-19 clinic testing during an adaptive epidemic response and a point-of-care test assessment of a computer-read rapid lateral flow immunoassay with fluorescence-base	12
Launching the Clostridioides difficile collection	12
The Apoprotein E4 isotype does not affect the severity of COVID-19 infection and other flu-like syndromes	11
Detection of IgM, IgG, IgA and neutralizing antibody responses to SARS-CoV-2 infection and mRNA vaccination	11
In vitro activity of imipenem/relebactam against piperacillin/tazobactam-resistant and meropenem-resistant non-Morganellaceae Enterobacterales and Pseudomonas aeruginosa collected from patients with b	11
Evaluation of the combined use of the Sepsityper Kit with the Clearview PBP2a assay for identification of staphylococci strains and detection of their methicillin resistance directly from positive blo	11
Multi-drug-resistant tuberculosis and its associated factors among pulmonary tuberculosis patients linked to first-line anti-tuberculosis drugs in north-west Ethiopia	11
A comparison of culture methods and polymerase chain reaction in detecting Clostridioides difficile from hospital surfaces	11
MARGINAL NOTES, August, 2023. Something in the air	11
New generation fluoroquinolone sitafloxacin could potentially overcome the majority levofloxacin and moxifloxacin resistance in multidrug-resistant Mycobacterium tuberculosis	10
Gram differentiation of bacteria by acoustic-enhanced flow cytometry	10
Diagnostic yield of broad-range 16s rRNA gene PCR varies by sample type and is improved by the addition of qPCR panels targeting the most common causative organisms	10
Towards an update on the antimicrobial use in Adult Care Units in Brazil: insights from multi-hospital prevalence study	10
Immunoassay-based evaluation of rOmp28 protein as a candidate for the identification of Brucella species	10
Corynebacterium kroppenstedtii breast abscesses in context, a retrospective cohort study	10
A comparison of routine blood culture methods and multiplex quantitative PCR for detecting pathogens in simulated polymicrobial blood cultures	10
Disinfection methods of dental unit waterlines contamination: a systematic review	10
Changes in the gut microbiota in mice exposed to chronic intermittent hypoxia	10
Interpreting diagnosis outcomes for tuberculosis to timely and reliably predict non-tuberculosis mycobacteria isolation	10
Whole-genome analysis of Haemophilus influenzae strains isolated from persons with cystic fibrosis	10
Quantifying patient- and hospital-level antimicrobial resistance dynamics in Staphylococcus aureus from routinely collected data	10
Expansion of hantavirus infection during the SARS-CoV-2 pandemic in Bosnia and Herzegovina, 2021	9
Candida glabrata and the host: a neglected affair	9
Hidden bugs in a newly opened hospital: the distribution of skin microbiota among healthcare workers in a newly opened teaching hospital	9
Robust prediction of colorectal cancer via gut microbiome 16S rRNA sequencing data	9
Comparison of the bacterial microbiome in the pharynx and nasal cavity of persistent, intermittent carriers and non-carriers of Staphylococcus aureus	9
Mucormycosis-causing fungi in humans: a meta-analysis establishing the phylogenetic relationships using internal transcribed spacer (ITS) sequences	9
The changes of gut microbiota and metabolites in different drug-induced liver injuries	9
Transient reemergence of Bordetella parapertussis in France in 2022	9

Dientamoeba fragilis: a story of contradictions	9
Mycoplasma genitalium molecular typing in men with non-gonococcal urethritis discriminates between phylogenetic clusters based on sexual preference and antibiotic resistance	9
Phenotypic diversity of type III secretion system activity in enteropathogenic Escherichia coli clinical isolates	9
JMM Profile: Trichosporon yeasts: from superficial pathogen to threat for haematological-neutropenic patients	9
Colistin utilization at a tertiary hospital in South Africa: an opportunity for antimicrobial stewardship practices	9
Dilemma and a way out for bacterial biofilm research	9
Clinical characteristics and outcomes of viral respiratory infections in allogeneic haematopoietic stem cell transplantation recipients: a single-centre experience	8
The effect of daily usage of Listerine Cool Mint mouthwash on the oropharyngeal microbiome: a substudy of the PReGo trial	8
Deciphering the impact of Acinetobacter baumannii on human health, and exploration of natural compounds as efflux pump inhibitors to treat multidrug resistance	8
Evaluating the use of whole-genome sequencing and Sanger emm typing in guiding the identification and public health management of invasive group A Streptococcus clusters and outbreaks in England	8
Long-term surveillance of group B Streptococcus strains isolated from infection and colonization in pregnant women and newborns	8
Molecular epidemiology of rodent-borne Leptospira spp. in Sri Lanka: identification of novel sequence types and previously unrecognized reservoir animals	8
Exploring interspecies differences in ex vivo models of Pseudomonas aeruginosa keratitis: a comparative study of human, pig and sheep corneas	8
Evaluation of NG-Test CARBA 5 for the detection of carbapenemase-producing Gram-negative bacilli	8
Molecular tracking of carbapenem-resistant Acinetobacter baumannii clinical isolates: a multicentre study over a 4-year period across eastern China	8
Establishing breakpoints for amoxicillin/clavulanate and ampicillin/sulbactam for rapid antimicrobial susceptibility testing directly from positive blood culture bottles	8
Characterization of a Helicobacter pylori strain with high biofilm-forming ability	8
Effect of nucleic acid concentration method on Severe Acute Respiratory Syndrome Coronavirus 2 detection sensitivity in aircraft wastewater	8
Shaping the future of Leptospira serotyping	7
Population structure, antibiotic resistance and molecular characteristics of Streptococcus pneumoniae causing invasive disease in Hubei, China	7
Impact of the COVID-19 restrictions on the epidemiology of Cryptosporidium spp. in England and Wales, 2015–2021: a time series analysis	7
Overview of US public health laboratory leadership development programmes and implementation opportunities	7
Emergence of carbapenem-resistant Pseudomonas alcaligenes and Pseudomonas paralcaligenes clinical isolates with plasmids harbouring bla IMP-1 in Japan	7
Multiple mechanisms of linezolid resistance in Staphylococcus haemolyticus detected by whole-genome sequencing	7
A systematic approach to microbial forensics	7
mgpB genotyping and genetic diversity for antimicrobial resistance of Mycoplasma genitalium	7
Latroeggtoxin-VI improves depression by regulating the composition and function of gut microbiota in a mouse model of depression	7
Abf1 negatively regulates the expression of EPA1 and affects adhesion in Candida glabrata	7
In vitro activity of tubercidin against Mycobacterium tuberculosis and nontuberculosis Mycobacteria	7
Development of novel broad-range pan-genus PCR assays for the detection of Tropheryma species	7
Serotype distribution and antimicrobial resistance of Streptococcus pneumoniae in paediatric patients in Japan (2020–2023)	7
Antibiotic exposure exacerbates acute-on-chronic liver failure via gut microbiota imbalance and secondary liver lesion	7
Invasive Aggregatibacter infection: shedding light on a rare pathogen in a retrospective cohort analysis	7
Evaluation and validation of a commercial ELISA versus the in vitro toxin neutralization assay for determination of diphtheria anti-toxin in human serum	7
Repurposing the non-steroidal anti-inflammatory drug diflunisal as an adjunct therapy with amphotericin B against mucoralean fungi	7
Antimicrobial spectrum against wound pathogens and cytotoxicity of star-arranged poly-l-lysine-based antimicrobial peptide polymers	6
Effect of co-administration of lactobacilli S-layer proteins on immune response against S-layer proteins from pathogenic Clostridioides difficile	6
Genomic characterization of colistin resistance in Klebsiella spp. under the pressure of colistin	6
Evaluating the accuracy of the MBT Lipid Xtract Kit for assessing colistin resistance in comparison to broth microdilution	6
Efficacy of ceftobiprole in a murine model of bacteremia and disseminated infection	6
JMM Profile: West Nile virus	6
Evaluation of GeneXpert MTB/Rif Ultra assay performance on formalin-fixed paraffin-embedded tissues for Mycobacterium tuberculosis detection	6
Oral microbiota signatures in obesity with or without acanthosis nigricans in a Chinese cohort	6
Exploration of the distribution of intestinal bacteria in mice under normal and intestinal leakage (IBD) conditions	6
Susceptibility of Gram-negative bacteria from blood cultures assessed by a rapid antimicrobial susceptibility assay, the VITEK® Reveal™: a preliminary study	6
JMM Profile: Brachyspira species: the causative agent of Avian Intestinal Spirochaetosis	6
Characterization of invasive meningococcal disease case isolates in Atlantic Canada, 2014 to 2020: spatial–temporal variations of clones and predicted meningococcal B vaccine coverage	6
Altered intestinal Streptococcus anginosus and 5α-reductase gene levels in patients with hepatocellular carcinoma and elevated Bacteroides stercoris in atezolizumab/bevacizumab non-responders	6
Advancing rapid diagnostics for bloodstream infections: a perspective on scattered light integrated collection technology	6
Antifungal potential of silver nanoparticles stabilized with the flavonoid naringenin	6
Inactivation of Candida albicans, Staphylococcus aureus and multidrug-resistant Escherichia coli with dielectric barrier discharged cold atmospheric plasma: a comparative study with antimicrobial drug	6
Next-generation sequencing for the diagnosis of Listeria monocytogenes meningoencephalitis: a case series of five consecutive patients	6
Sensitivity and specificity of DPP® Fever Panel II Asia in the diagnosis of malaria, dengue and melioidosis	6
Combined oropharyngeal/nares and nasopharyngeal swab sampling remain effective for molecular detection of SARS-CoV-2 Omicron variant	6
Impact of extreme weather events on the occurrence of infectious diseases in Belgium from 2011 to 2021	6
Integrated analysis of intestinal microbiota and host gene expression in colorectal cancer patients	6
Massive sequencing of the V3–V4 hypervariable region of bronchoalveolar lavage from patients with COVID-19 and VAP reveals the collapse of the pulmonary microbiota	6
Pseudomonas aeruginosa infection is associated with alveolar macrophage M2 polarization via MERTK-mediated NLRC4 inflammasome activation	6
Xpert MTB/RIF Ultra performance on bronchial specimens in diagnosing pulmonary tuberculosis in Vancouver, Canada	6
JMM Profile: Sindbis virus, a cause of febrile illness and arthralgia	6
Clostridioides difficile detection and infection in children: are they just small adults?	6
Molecular characterization of Pseudomonas aeruginosa from diabetic foot infections in Tunisia	5
Effect of proton pump inhibitors on susceptibility and melanogenesis of Sporothrix species	5
Rapid determination of antimicrobial susceptibility of Gram-negative bacteria from clinical blood cultures using a scattered light-integrated collection device	5
Prevalence of selected Shiga toxin-producing Escherichia coli vaccine antigen genes among two geographically distinct ruminant populations	5
Ciprofloxacin prophylaxis during haematopoietic cell transplantation: a role for use in patients with germ cell tumours?	5
Concordance analysis between Human Papillomavirus genotyping assay and PCR-reverse spot hybridization for the detection of Human Papillomavirus infection	5
Evaluation of the efficacy of tongue swab and saliva as samples for testing COVID-19 infection in symptomatic cases in comparison with nasopharyngeal swab	5
16S rDNA analysis of osteoporotic rats treated with osteoking	5
Assessing antimicrobial resistance profiles of Salmonella enterica in the pork production system	5
Strain-specific persistence of Burkholderia cenocepacia in the C3HeB/FeJ mouse model of pulmonary infection	5
Microbiological and molecular screening of Candida spp. isolated from genital tract of asymptomatic pregnant women	5
A comparative analysis of the second and third wave of the Covid-19 pandemic: an experience from a tertiary care hospital in Western India	5
Lower gastrointestinal tract dysbiosis in persistent critical illness: a systematic review	5
PET-CT for characterising TB infection (TBI) in immunocompetent subjects: a systematic review	5
A retrospective cross-sectional observational study of SARS-CoV-2 reinfection in La Ribera Health Department, Valencia, Spain	5
The cystic fibrosis pathogen Achromobacter xylosoxidans inhibits biofilm formation of Pseudomonas aeruginosa	5
Complete genome identified of clinical isolate Prototheca	5
Assessment of SARS-CoV-2 genome sequence recovery from four lateral flow device products available in the UK	5
Mutations in atpG2 may confer resistance to gentamicin in Listeria monocytogenes	5

CLEC4A and CLEC12B C-type lectin receptors mediate interactions with Pneumocystis cell wall components	5
Procalcitonin kinetics in Gram-negative bloodstream infections and its value for infection management	5
Corrigendum: Lactobacillus fermentum strains of dairy product origin adhere to mucin and survive digestive juices	5
MARGINAL NOTES, December 2023: Sepsis waits for no-one	5
Serum levels of type I interferon (IFN-I) is associated with the severity of COVID-19	5
Polymyxin heteroresistance in Klebsiella oxytoca	5
Preliminary view of the distribution and spread of the plasmid-mediated resistance genes in Glaesserella parasuis	5
The Ebola virus – going beyond the bleeding edge	5
Corrigendum: Species-level quantification of Faecalibacterium spp. in faeces of healthy Japanese adults	5
Combining Gram stain and 16S qPCR improved diagnostic accuracy for suspected pneumonia and could become a new metric in the rapid diagnosis of lower respiratory tract infections	5
Evaluation of whole-genome sequencing protocols for detection of antimicrobial resistance, virulence factors and mobile genetic elements in antimicrobial-resistant bacteria	5
Commercial molecular diagnostic methods in infectious diseases: keeping up with the pathogens	5
Regulation of virulence factors of Pseudomonas aeruginosa by Scutellaria baicalensis, Prunella vulgaris and antimicrobial peptide LL-37	5
Prediction of genome-wide imipenem resistance features in Klebsiella pneumoniae using machine learning	5
Enhanced laboratory surveillance study of Campylobacter species in England	5
Waddlia chondrophila: from a bovine abortigenic agent to a potential cause of human adverse pregnancy outcomes	5
Characterization of Candida spp. from the urinary tract: antifungal susceptibility and virulence traits	5
Thrombotic storm in coronavirus disease 2019: from underlying mechanisms to its management	5
Marginal notes – August 2022	5
Building an antimicrobial stewardship model for a public-sector hospital: a pre-implementation study	5
Molecular typing of reduced susceptibility of Acinetobacter calcoaceticus–baumannii complex to Chlorhexidine in Turkey by pulsed-field gel electrophoresis	5
Surveillance of invasive meningococcal disease in southern Brazil: considerations of an immunization programme	5
Pulmonary cryptococcosis in routine care: the clinical–radiologic spectrum and transparent evidence-tier reporting (confirmed versus presumed) among patients with no recorded immunocompromising condit	5
Commercial farmed swine harbour a variety of pathogenic bacteria and antimicrobial resistance genes	5
Bone and joint tuberculosis in paediatrics: a 13-year retrospective study	5