Journal of Medical Microbiology

Article	Citations
Evaluation of the World Health Organization Global Invasive Bacterial Vaccine-Preventable Disease (IB-VPD) Surveillance Network’s Laboratory External Quality Assessment Programme, 2014–2019	99
Adaptation of gltA and ssrA assays for diversity profiling by Illumina sequencing to identify Bartonella henselae, B. clarridgeiae and B. koehlerae	97
Changes in the expression of miR-103a and miR-21: a functional diagnosis of toxocariasis in rats	65
Changes in serum amyloid A, plasma high-density lipoprotein cholesterol and apolipoprotein A-I as useful biomarkers for Mycobacterium tuberculosis infection	33
An end-point multiplex RT-PCR for SARS-CoV-2, Influenza A and B detection, including simultaneous RNAse P amplification: a timely tool for more accessible differential diagnosis	33
Class 1 integrons in clinical and swine industry isolates of Salmonella Typhimurium from Colombia, dating 1997 to 2017	32
Clinical efficacy and safety of antifungal drugs for the treatment of Candida parapsilosis infections: a systematic review and network meta-analysis	26
Identification of consensus head and neck cancer-associated microbiota signatures: a systematic review and meta-analysis of 16S rRNA and The Cancer Microbiome Atlas datasets	22
Evaluation of anti-biofilm effect of antimicrobial sonodynamic therapy-based periodontal ligament stem cell-derived exosome-loaded kojic acid on Enterococcus faecalis biofilm	22
In vitro activity of bedaquiline against Mycobacterium avium complex	21
Hospital transmission of borderline oxacillin-resistant Staphylococcus aureus evaluated by whole-genome sequencing	20
Novel automated antifungal susceptibility testing system for yeasts based on dual-detection algorithm of turbidimetry and colorimetry	20
Serum biomarkers to differentiate Gram-negative, Gram-positive and fungal infection in febrile patients	20
Complete genome sequence and probiotic properties of Lactococcus petauri LZys1 isolated from healthy human gut	19
In vitro and in silico assessment of anti-biofilm and anti-quorum sensing properties of 2,4-Di-tert butylphenol against Acinetobacter baumannii	19
Technologies to decontaminate bacterial biofilm on hospital surfaces: a potential new role for cold plasma?	19
The human bile salt sodium deoxycholate induces metabolic and cell envelope changes in Salmonella Typhi leading to bile resistance	19
Localized outbreaks of Pseudomonas aeruginosa belonging to international high-risk clones in a south Indian hospital	18
Targeted ‘knock out’ therapy with a combination antimicrobial regimen restores treatment options in the management of extensively drug-resistant carbapenemase-producing organisms	18
Utility of in-house and commercial PCR assay in diagnosis of Covid-19 associated mucormycosis in an emergency setting in a tertiary care center	18
Erratum: Dysbiosis–epigenetics–immune system interaction and ageing health problems	17
Clinical and public health implications of increasing notifications of LEE-negative Shiga toxin-producing Escherichia coli in England, 2014–2022	17
Effector genes of type III secretion system and biofilm formation in virulent Pseudomonas aeruginosa isolates carrying bla KPC-2 and bla PDC-5 genes in hospital environment	17
CXCR2 perturbation promotes Staphylococcus aureus implant-associated infection	17
Gut microbiota associated with the mitigation effect of synbiotics on adverse events of neoadjuvant chemotherapy in patients with esophageal cancer: A retrospective exploratory study	16

Sertraline has in vitro activity against both mature and forming biofilms of different Candida species	16
MARGINAL NOTES, June 2023 – running on empty	15
Launching the Clostridioides difficile collection	15
Chronic Strongyloides stercoralis infection in Fijian migrants to the UK	14
In vitro antifungal effect of a plant-based product, CIN-102, on antifungal resistant filamentous fungi and their biofilms	14
Multicenter evaluation of the FilmArray Meningitis/Encephalitis assay in a routine setting	14
SARS-CoV-2 in outdoor air following the third wave lockdown release, Portugal, 2021	13
Genetic association of gut microbiota with osteoarthritis: a multivariable Mendelian randomization study considering medication use	13
The microbiome of the nasopharynx	13
The emerging threat of Japanese encephalitis in Australia: is it the time to worry?	13
Lessons learned: drive-through COVID-19 clinic testing during an adaptive epidemic response and a point-of-care test assessment of a computer-read rapid lateral flow immunoassay with fluorescence-base	13
Antifungal activity and potential mechanism of action of Huangqin decoction against Trichophyton rubrum	13
Delays to treatment initiation and emergence of drug resistance among new adult tuberculosis patients in Tigray, Northern Ethiopia	12
Development of multiplex real-time PCR for detection of clarithromycin resistance genes for the Mycobacterium abscessus group	12
Fluoroquinolone resistance in non-typhoidal Salmonella enterica isolated from slaughtered pigs in Thailand	12
In vitro activity of imipenem/relebactam against piperacillin/tazobactam-resistant and meropenem-resistant non-Morganellaceae Enterobacterales and Pseudomonas aeruginosa collected from patients with b	12
Protein expression profiling, in silico classification and pathway analysis of cariogenic bacteria Streptococcus mutans under bacitracin stress conditions	12
Genetic characteristics of azithromycin-resistant Neisseria gonorrhoeae collected in Hyogo, Japan during 2015–2019	12
Genomic insights into extended-spectrum β-lactamase- and plasmid-borne AmpC-producing Escherichia coli transmission between humans and livestock in rural Cambodia	12
Identification & correlation of bacterial diversity in oral cancer and long-term tobacco chewers- A case-control pilot study	12
Introducing biomarkers for invasive fungal disease in haemato-oncology patients: a single-centre experience	12
Expansion of hantavirus infection during the SARS-CoV-2 pandemic in Bosnia and Herzegovina, 2021	12
Multi-drug-resistant tuberculosis and its associated factors among pulmonary tuberculosis patients linked to first-line anti-tuberculosis drugs in north-west Ethiopia	11
New generation fluoroquinolone sitafloxacin could potentially overcome the majority levofloxacin and moxifloxacin resistance in multidrug-resistant Mycobacterium tuberculosis	11
MARGINAL NOTES, August, 2023. Something in the air	11
Clinical and microbiological investigation into mixed growth urine cultures	10
Comparison of the bacterial microbiome in the pharynx and nasal cavity of persistent, intermittent carriers and non-carriers of Staphylococcus aureus	10
Towards an update on the antimicrobial use in Adult Care Units in Brazil: insights from multi-hospital prevalence study	10
Evaluation of the combined use of the Sepsityper Kit with the Clearview PBP2a assay for identification of staphylococci strains and detection of their methicillin resistance directly from positive blo	10
Diagnostic yield of broad-range 16s rRNA gene PCR varies by sample type and is improved by the addition of qPCR panels targeting the most common causative organisms	10
Immunoassay-based evaluation of rOmp28 protein as a candidate for the identification of Brucella species	10
The Apoprotein E4 isotype does not affect the severity of COVID-19 infection and other flu-like syndromes	10
Chitosan propolis nanocomposite alone or in combination with apramycin: an alternative therapy for multidrug-resistant Salmonella Typhimurium in rabbits: in vitro and in vivo study	10
Mycoplasma genitalium molecular typing in men with non-gonococcal urethritis discriminates between phylogenetic clusters based on sexual preference and antibiotic resistance	9
Whole-genome analysis of Haemophilus influenzae strains isolated from persons with cystic fibrosis	9
Corynebacterium kroppenstedtii breast abscesses in context, a retrospective cohort study	9
Paecilomyces cicadae-fermented Radix astragali ameliorate diabetic nephropathy in mice by modulating the gut microbiota	9
A comparison of culture methods and polymerase chain reaction in detecting Clostridioides difficile from hospital surfaces	9
Dilemma and a way out for bacterial biofilm research	9
Evaluation of in vitro activity of fosfomycin, and synergy in combination, in Gram-negative bloodstream infection isolates in a UK teaching hospital	9
Phenotypic diversity of type III secretion system activity in enteropathogenic Escherichia coli clinical isolates	9
Disinfection methods of dental unit waterlines contamination: a systematic review	9
Interpreting diagnosis outcomes for tuberculosis to timely and reliably predict non-tuberculosis mycobacteria isolation	9
The changes of gut microbiota and metabolites in different drug-induced liver injuries	9
Group B streptococcal infections in infants in Iceland: clinical and microbiological factors	9
Quantifying patient- and hospital-level antimicrobial resistance dynamics in Staphylococcus aureus from routinely collected data	9
Mucormycosis-causing fungi in humans: a meta-analysis establishing the phylogenetic relationships using internal transcribed spacer (ITS) sequences	9
JMM profile: Loop-mediated isothermal amplification (LAMP): for the rapid detection of nucleic acid targets in resource-limited settings	9
Detection of IgM, IgG, IgA and neutralizing antibody responses to SARS-CoV-2 infection and mRNA vaccination	9
Molecular tracking of carbapenem-resistant Acinetobacter baumannii clinical isolates: a multicentre study over a 4-year period across eastern China	9

An isothermal amplification-coupled dipstick for the rapid detection of COVID-19	8
Robust prediction of colorectal cancer via gut microbiome 16S rRNA sequencing data	8
Characterization of a Helicobacter pylori strain with high biofilm-forming ability	8
Colistin utilization at a tertiary hospital in South Africa: an opportunity for antimicrobial stewardship practices	8
JMM Profile: Trichosporon yeasts: from superficial pathogen to threat for haematological-neutropenic patients	8
Deciphering the impact of Acinetobacter baumannii on human health, and exploration of natural compounds as efflux pump inhibitors to treat multidrug resistance	8
Network-wide analysis of the Serosep EntericBio Gastro Panel 2 for the detection of enteric pathogens in Public Health Wales microbiology laboratories	8
Long-term surveillance of group B Streptococcus strains isolated from infection and colonization in pregnant women and newborns	8
The effect of daily usage of Listerine Cool Mint mouthwash on the oropharyngeal microbiome: a substudy of the PReGo trial	8
Transient reemergence of Bordetella parapertussis in France in 2022	8
Evaluation of NG-Test CARBA 5 for the detection of carbapenemase-producing Gram-negative bacilli	8
Abf1 negatively regulates the expression of EPA1 and affects adhesion in Candida glabrata	7
JMM Profiles for the Journal of Medical Microbiology: an update	7
Establishing breakpoints for amoxicillin/clavulanate and ampicillin/sulbactam for rapid antimicrobial susceptibility testing directly from positive blood culture bottles	7
The role of Staphylococcus lugdunensis as a pathogen in children: a multicentre retrospective study	7
Hidden bugs in a newly opened hospital: the distribution of skin microbiota among healthcare workers in a newly opened teaching hospital	7
Development of novel broad-range pan-genus PCR assays for the detection of Tropheryma species	7
Repurposing the non-steroidal anti-inflammatory drug diflunisal as an adjunct therapy with amphotericin B against mucoralean fungi	7
Exploring interspecies differences in ex vivo models of Pseudomonas aeruginosa keratitis: a comparative study of human, pig and sheep corneas	7
In vitro activity of tubercidin against Mycobacterium tuberculosis and nontuberculosis Mycobacteria	7
Genomic epidemiology of the opportunistic pathogen Staphylococcus coagulans from companion dogs	7
Evaluation and validation of a commercial ELISA versus the in vitro toxin neutralization assay for determination of diphtheria anti-toxin in human serum	7
Increasingly limited options for the treatment of enteric fever in travellers returning to England, 2014–2019: a cross-sectional analytical study	7
Invasive Aggregatibacter infection: shedding light on a rare pathogen in a retrospective cohort analysis	7
Clonal spread of ArmA- and OXA-23-coproducing Acinetobacter baumannii International Clone 2 in Brazil during the first wave of the COVID-19 pandemic	6
Multiple mechanisms of linezolid resistance in Staphylococcus haemolyticus detected by whole-genome sequencing	6
In vitro efficacy of antibiotic loaded calcium sulfate beads (Stimulan Rapid Cure) against polymicrobial communities and individual bacterial strains derived from diabetic foot infections	6
Antimicrobial spectrum against wound pathogens and cytotoxicity of star-arranged poly-l-lysine-based antimicrobial peptide polymers	6
Susceptibility of Gram-negative bacteria from blood cultures assessed by a rapid antimicrobial susceptibility assay, the VITEK® Reveal™: a preliminary study	6
Network pharmacology and molecular docking analysis on mechanisms of Tibetan Hongjingtian (Rhodiola crenulata) in the treatment of COVID-19	6
A systematic approach to microbial forensics	6
Emergence of carbapenem-resistant Pseudomonas alcaligenes and Pseudomonas paralcaligenes clinical isolates with plasmids harbouring bla IMP-1 in Japan	6
In vitro synergistic activity of aztreonam (AZT) plus novel and old β-lactamase inhibitor combinations against metallo-β-lactamase-producing AZT-resistant Enterobacterales	6
Genomic characterization of colistin resistance in Klebsiella spp. under the pressure of colistin	6
Sensitivity and specificity of DPP® Fever Panel II Asia in the diagnosis of malaria, dengue and melioidosis	6
Combined oropharyngeal/nares and nasopharyngeal swab sampling remain effective for molecular detection of SARS-CoV-2 Omicron variant	6
mgpB genotyping and genetic diversity for antimicrobial resistance of Mycoplasma genitalium	6
Latroeggtoxin-VI improves depression by regulating the composition and function of gut microbiota in a mouse model of depression	6
Conventional PCR as a reliable method for diagnosing invasive mucormycosis in resource-limited settings	6
Treating autism spectrum disorder by intervening with gut microbiota	6
Integrated analysis of intestinal microbiota and host gene expression in colorectal cancer patients	6
Altered intestinal Streptococcus anginosus and 5α-reductase gene levels in patients with hepatocellular carcinoma and elevated Bacteroides stercoris in atezolizumab/bevacizumab non-responders	6
Predominance of community-associated, methicillin-susceptible Staphylococcus aureus infections among hospitalized children and adolescents	6
JMM Profile: Brachyspira species: the causative agent of Avian Intestinal Spirochaetosis	6
Combining Gram stain and 16S qPCR improved diagnostic accuracy for suspected pneumonia and could become a new metric in the rapid diagnosis of lower respiratory tract infections	5
Corrigendum: Lactobacillus fermentum strains of dairy product origin adhere to mucin and survive digestive juices	5
Commercial molecular diagnostic methods in infectious diseases: keeping up with the pathogens	5
Clostridioides difficile detection and infection in children: are they just small adults?	5
Antifungal potential of silver nanoparticles stabilized with the flavonoid naringenin	5
Evaluating the accuracy of the MBT Lipid Xtract Kit for assessing colistin resistance in comparison to broth microdilution	5
Comparative analyses of clinical features reveal the severity of human adenovirus type 55 and type 7 in acute respiratory tract infections	5
Impact of extreme weather events on the occurrence of infectious diseases in Belgium from 2011 to 2021	5
Efficacy of ceftobiprole in a murine model of bacteremia and disseminated infection	5
Clinically healthy household dogs and cats as carriers of multidrug-resistant Salmonella enterica with variable R plasmids	5
Bone and joint tuberculosis in paediatrics: a 13-year retrospective study	5
Effect of proton pump inhibitors on susceptibility and melanogenesis of Sporothrix species	5
Lower gastrointestinal tract dysbiosis in persistent critical illness: a systematic review	5
High seroprevalence of anti-DENV IgM in blood donors in an early outbreak in the Federal District of Brazil, 2019	5
JMM Profile: West Nile virus	5
Characterization of invasive meningococcal disease case isolates in Atlantic Canada, 2014 to 2020: spatial–temporal variations of clones and predicted meningococcal B vaccine coverage	5
Next-generation sequencing for the diagnosis of Listeria monocytogenes meningoencephalitis: a case series of five consecutive patients	5
Impact of the COVID-19 restrictions on the epidemiology of Cryptosporidium spp. in England and Wales, 2015–2021: a time series analysis	5
Massive sequencing of the V3–V4 hypervariable region of bronchoalveolar lavage from patients with COVID-19 and VAP reveals the collapse of the pulmonary microbiota	5
First identification of bla NDM-5 producing Escherichia coli from neonates and a HIV infected adult in Tanzania	5
Molecular typing of reduced susceptibility of Acinetobacter calcoaceticus–baumannii complex to Chlorhexidine in Turkey by pulsed-field gel electrophoresis	5
Advancing rapid diagnostics for bloodstream infections: a perspective on scattered light integrated collection technology	5
A retrospective cross-sectional observational study of SARS-CoV-2 reinfection in La Ribera Health Department, Valencia, Spain	5
Microbiological and molecular screening of Candida spp. isolated from genital tract of asymptomatic pregnant women	5
Evaluation of GeneXpert MTB/Rif Ultra assay performance on formalin-fixed paraffin-embedded tissues for Mycobacterium tuberculosis detection	5
Inactivation of Candida albicans, Staphylococcus aureus and multidrug-resistant Escherichia coli with dielectric barrier discharged cold atmospheric plasma: a comparative study with antimicrobial drug	5
BCG and BCGΔBCG1419c transiently protect hypersusceptible I/St mice and induce different influx of macrophages and neutrophils during pulmonary tuberculosis	5
Bacteria associated with infectious keratoconjunctivitis outbreak in confined lambs	5
JMM Profile: Sindbis virus, a cause of febrile illness and arthralgia	5
Surveillance of carbapenem-resistant Klebsiella pneumoniae in a paediatric hospital in China revealed the dynamics of carbapenemase and the prevalence of ST2735 K. pneumoniae	5
Prediction of genome-wide imipenem resistance features in Klebsiella pneumoniae using machine learning	5
16S rDNA analysis of osteoporotic rats treated with osteoking	4
Surveillance of Salmonella and antimicrobial resistance in industrial poultry enterprises: biofilm-forming strains and critical control points	4
Characterization of bla NDM-5-harbouring Klebsiella pneumoniae sequence type 11 international high-risk clones isolated from clinical samples in Yangon General Hospital, a tertiary-care ho	4
Genetic characterization of clonal complex sequence type 2057 (cc2057) serogroup B Neisseria meningitidis strains unique to Japan and identification of a capsular-switched serogroup Y isolate cc2057	4
Molecular characterization of Pseudomonas aeruginosa from diabetic foot infections in Tunisia	4

Evaluation of the rapid ResaPolymyxin Acinetobacter/Pseudomonas NP test for rapid colistin resistance detection in lactose non-fermenting Gram-negative bacteria	4
Predomination of hypervirulent ST283 and genetic diversity of levofloxacin resistance in multidrug-resistant, hypervirulent Streptococcus agalactiae in Thailand	4
Evaluation of antioxidant status and oxidative stress markers in HTLV-1 infected individuals: correlation with the severity of virus-induced complications	4
Mutations in atpG2 may confer resistance to gentamicin in Listeria monocytogenes	4
Adult gonococcal conjunctivitis: Prevalence, clinical features and complications	4
Absence of SARS-CoV-2 in the air and on the surfaces within the school environment	4
Avian reovirus: a furious and fast evolving pathogen	4
Evaluation of whole-genome sequencing protocols for detection of antimicrobial resistance, virulence factors and mobile genetic elements in antimicrobial-resistant bacteria	4
P1 gene of Mycoplasma pneumoniae isolated from 2016 to 2019 and relationship between genotyping and macrolide resistance in Hokkaido, Japan	4
Invasion and diversity in Pseudomonas aeruginosa urinary tract infections	4
Rapid determination of antimicrobial susceptibility of Gram-negative bacteria from clinical blood cultures using a scattered light-integrated collection device	4
Evaluating the drop test method in measuring colistin susceptibility of Klebsiella pneumoniae, Escherichia coli and Pseudomonas aeruginosa	4
Commercial farmed swine harbour a variety of pathogenic bacteria and antimicrobial resistance genes	4
Concordance analysis between Human Papillomavirus genotyping assay and PCR-reverse spot hybridization for the detection of Human Papillomavirus infection	4
Marginal notes – August 2022	4
CLEC4A and CLEC12B C-type lectin receptors mediate interactions with Pneumocystis cell wall components	4
Enhanced monitoring of healthcare shower water in augmented and non-augmented care wards showing persistence of Pseudomonas aeruginosa despite remediation work	4
Building an antimicrobial stewardship model for a public-sector hospital: a pre-implementation study	4
MARGINAL NOTES, December 2023: Sepsis waits for no-one	4
Antimicrobial susceptibility study and molecular epidemiology of ceftazidime/avibactam against Pseudomonas aeruginosa collected from clinical patients in PR China (2004–2021)	4
Preliminary view of the distribution and spread of the plasmid-mediated resistance genes in Glaesserella parasuis	4
Serum levels of type I interferon (IFN-I) is associated with the severity of COVID-19	4
JMM Profile: Vibrio cholerae: an opportunist of human crises	4
SARS-CoV-2 and Prevotella spp.: friend or foe? A systematic literature review	4
Complete genome identified of clinical isolate Prototheca	4
PET-CT for characterising TB infection (TBI) in immunocompetent subjects: a systematic review	4
Determination of incompatibility group plasmids and copy number of the bla NDM-1 gene in carbapenem-resistant Klebsiella pneumoniae strains recovered from different hospitals in Kerman, Ir	4
Assessing antimicrobial resistance profiles of Salmonella enterica in the pork production system	4
Ciprofloxacin prophylaxis during haematopoietic cell transplantation: a role for use in patients with germ cell tumours?	4
The role of lipid droplets in microbial pathogenesis	4
Emergence of Neisseria meningitidis W South American sublineage strain variant in Brazil: disease and carriage	4
Surveillance of invasive meningococcal disease in southern Brazil: considerations of an immunization programme	4
Import of global high-risk clones is the primary driver of carbapenemase-producing Pseudomonas aeruginosa in Norway	4
Evaluation of the efficacy of tongue swab and saliva as samples for testing COVID-19 infection in symptomatic cases in comparison with nasopharyngeal swab	4
Evaluation of Culture Top transport systems for assessing the bacterial diversity of microbiota by culturomics as compared to a routine transport system	4
A comparative analysis of the second and third wave of the Covid-19 pandemic: an experience from a tertiary care hospital in Western India	4
Cervicovaginal loads of Gardnerella spp. are increased in immunocompetent women with persistent high-risk human papillomavirus infection	4
Thrombotic storm in coronavirus disease 2019: from underlying mechanisms to its management	4