Journal of Medical Microbiology

Article	Citations
Co-infection in critically ill patients with COVID-19: an observational cohort study from England	81
Evaluation of metal-based antimicrobial compounds for the treatment of bacterial pathogens	79
The role of Akkermansia muciniphila in obesity, diabetes and atherosclerosis	74
On the emergence, spread and resistance of Candida auris: host, pathogen and environmental tipping points	63
JMM Profile: Carbapenems: a broad-spectrum antibiotic	49
The clinical significance of simultaneous detection of pathogens from bronchoalveolar lavage fluid and blood samples by metagenomic next-generation sequencing in patients with severe pneumonia	42
Archived dengue serum samples produced false-positive results in SARS-CoV-2 lateral flow-based rapid antibody tests	30
Understanding the microbial components of periodontal diseases and periodontal treatment-induced microbiological shifts	29
The emerging importance of Shiga toxin-producing Escherichia coli other than serogroup O157 in England	23
Comparing DADA2 and OTU clustering approaches in studying the bacterial communities of atopic dermatitis	22
Molecular identification of pathogenic fungi in formalin-fixed and paraffin-embedded tissues	22
Clinical evaluation of a fully automated, laboratory-developed multiplex RT-PCR assay integrating dual-target SARS-CoV-2 and influenza A/B detection on a high-throughput platform	21
Prebiotics and probiotics for autism spectrum disorder: a systematic review and meta-analysis of controlled clinical trials	21
Detection of SARS-CoV-2 in saliva: implications for specimen transport and storage	20
Effect of COVID-19 on vaccination coverage in Brazil	20
Acceptable performance of the Abbott ID NOW among symptomatic individuals with confirmed COVID-19	19
CPC-containing oral rinses inactivate SARS-CoV-2 variants and are active in the presence of human saliva	19
A 25-year retrospective study of Chlamydia psittaci in association with equine reproductive loss in Australia	17
Impact of pH on growth of Staphylococcus epidermidis and Staphylococcus aureus in vitro	17
The microbiome of the nasopharynx	17
Cholera dynamics: lessons from an epidemic	17
The effect of probiotic supplementation on the gut microbiota of preterm infants	17
Co-infections of two carbapenemase-producing Enterobacter hormaechei clinical strains isolated from the same diabetes individual in China	16
Emergence of a plasmid-borne tigecycline resistance in Klebsiella pneumoniae in Vietnam	16
Increasingly limited options for the treatment of enteric fever in travellers returning to England, 2014–2019: a cross-sectional analytical study	16

Molecular characterization of carbapenem-resistant Enterobacteriaceae and emergence of tigecycline non-susceptible strains in the Henan province in China: a multicentrer study	15
Development, deployment and in-field demonstration of mobile coronavirus SARS-CoV-2 Nucleic acid amplification test	15
Network pharmacology and molecular docking analysis on mechanisms of Tibetan Hongjingtian (Rhodiola crenulata) in the treatment of COVID-19	15
Emergence of carbapenem-resistant Klebsiella pneumoniae harbouring bla OXA-48-like genes in China	15
Eucalyptol inhibits biofilm formation of Streptococcus pyogenes and its mediated virulence factors	15
Novel multiplex PCRs for detection of the most prevalent carbapenemase genes in Gram-negative bacteria within Germany	15
Komodo-dragon cathelicidin-inspired peptides are antibacterial against carbapenem-resistant Klebsiella pneumoniae	14
Clonal spread of ArmA- and OXA-23-coproducing Acinetobacter baumannii International Clone 2 in Brazil during the first wave of the COVID-19 pandemic	14
Variations in oral microbiome and its predictive functions between tumorous and healthy individuals	14
Contribution of the efflux pump AcrAB-TolC to the tolerance of chlorhexidine and other biocides in Klebsiella spp.	13
Evaluation of GENECUBE Mycoplasma for the detection of macrolide-resistant Mycoplasma pneumoniae	13
Sixteen cases of severe pneumonia caused by Chlamydia psittaci in South China investigated via metagenomic next-generation sequencing	13
Whole genome sequencing of a clinical drug resistant Candida albicans isolate reveals known and novel mutations in genes involved in resistance acquisition mechanisms	13
Emergence of novel strains of Shigella flexneri associated with sexual transmission in adult men in England, 2019–2020	13
Host factors abolish the need for polysaccharides and extracellular matrix-binding protein in Staphylococcus epidermidis biofilm formation	12
Detection and characterization of hybrid uropathogenic Escherichia coli strains among E. coli isolates causing community-acquired urinary tract infection	12
JMM Profile: Actinobacillus pleuropneumoniae: a major cause of lung disease in pigs but difficult to control and eradicate	12
Feasibility analysis and mechanism exploration of Rhei Radix et Rhizome−Schisandrae Sphenantherae Fructus (RS) against COVID-19	12
Diversity of carbapenemase-producing Enterobacterales in England as revealed by whole-genome sequencing of isolates referred to a national reference laboratory over a 30-month period	12
Serum biomarkers to differentiate Gram-negative, Gram-positive and fungal infection in febrile patients	12
Microbiological pattern of prosthetic hip and knee infections: a high-volume, single-centre experience in China	12
Molecular evaluation of quorum quenching potential of vanillic acid against Yersinia enterocolitica through transcriptomic and in silico analysis	12
JMM Profile: Staphylococcus epidermidis	11
Invasion and diversity in Pseudomonas aeruginosa urinary tract infections	11
In vitro synergy of 5-nitrofurans, vancomycin and sodium deoxycholate against Gram-negative pathogens	11
The role of lipid droplets in microbial pathogenesis	11
Dental biofilm and its ecological interrelationships in ovine periodontitis	11
JMM profile: rifampicin: a broad-spectrum antibiotic	11
Epidemiology and genomic analysis of Shiga toxin-producing Escherichia coli clonal complex 165 in the UK	11
Prevalence of Mycoplasma genitalium fluoroquinolone-resistance markers, and dual-class-resistance markers, in asymptomatic men who have sex with men	11
Lipopolysaccharide from biofilm-forming Pseudomonas aeruginosa PAO1 induces macrophage hyperinflammatory responses	11
Hospital sink traps as a potential source of the emerging multidrug-resistant pathogen Cupriavidus pauculus: characterization and draft genome sequence of strain MF1	10
Adaptations of carbapenem resistant Acinetobacter baumannii (CRAB) in the hospital environment causing sustained outbreak	10
Molecular identification and antifungal susceptibility of clinically relevant and cryptic species of Aspergillus sections Flavi and Nigri	10
JMM profile: Loop-mediated isothermal amplification (LAMP): for the rapid detection of nucleic acid targets in resource-limited settings	10
Emerging strategies for environmental decontamination of the nosocomial fungal pathogen Candida auris	10
Sampling challenges in diagnosis of chronic bacterial infections	10
Rapid Sepsityper in clinical routine: 2 years’ successful experience	10
The prevalence of dermatophytoses in Brazil: a systematic review	10
Porphyromonas pasteri and Prevotella nanceiensis in the sputum microbiota are associated with increased decline in lung function in individuals with cystic fibrosis	10
Aminoglycoside resistance in Pseudomonas aeruginosa: the contribution of the MexXY-OprM efflux pump varies between isolates	10
Disinfection methods of dental unit waterlines contamination: a systematic review	10
Identification and antimicrobial susceptibility of referred Nocardia isolates in Victoria, Australia 2009–2019	9
Modelling persistent Mycoplasma pneumoniae biofilm infections in a submerged BEAS-2B bronchial epithelial tissue culture model	9
Evaluation of the antifungal effect of chlorogenic acid against strains of Candida spp. resistant to fluconazole: apoptosis induction and in silico analysis of the possible mechanisms of action	9
Identification & correlation of bacterial diversity in oral cancer and long-term tobacco chewers- A case-control pilot study	9
Resistance to nitrofurantoin is an indicator of extensive drug-resistant (XDR) Enterobacteriaceae	9
Clinical utility of 16S rRNA PCR in pleural infection	9
Pan-drug resistant Providencia rettgeri contributing to a fatal case of COVID-19	9
Complete genome sequence and probiotic properties of Lactococcus petauri LZys1 isolated from healthy human gut	9

Disinfection to control African swine fever virus: a UK perspective	9
Detection of parC gene mutations associated with quinolone resistance in Mycoplasma genitalium: evaluation of a multiplex real-time PCR assay	9
Immunogenicity after the first dose of the BNT162b2 mRNA Covid-19 vaccine: real-world evidence from Greek healthcare workers	9
Whole-genome sequencing to investigate two concurrent outbreaks of Salmonella Enteritidis in South Africa, 2018	9
Wide distribution of Escherichia coli carrying IncF plasmids containing bla NDM-5 and rmtB resistance genes from hospitalized patients in England	8
Impact of different SARS-CoV-2 assays on laboratory turnaround time	8
Immunomodulatory streptococci that inhibit CXCL8 secretion and NFκB activation are common members of the oral microbiota	8
Thymidine utilisation pathway is a novel phenotypic switch of Mycoplasma hominis	8
An update on ampicillin resistance and β-lactamase genes of Bacteroides spp.	8
SARS-CoV-2 and Prevotella spp.: friend or foe? A systematic literature review	8
Validation of saliva sampling as an alternative to oro-nasopharyngeal swab for detection of SARS-CoV-2 using unextracted rRT-PCR with the Allplex 2019-nCoV assay	8
JMM Profile: Bordetella pertussis and whooping cough (pertussis): still a significant cause of infant morbidity and mortality, but vaccine-preventable	8
Uropathogenic Escherichia coli can cause cystitis at extremely low inocula in a pig model	8
Effect of adding probiotics to an antibiotic intervention on the human gut microbial diversity and composition: a systematic review	8
JMM Profile: Streptococcus pneumoniae: sugar-coated captain of the men of death	8
JMM Profile: Tick-borne encephalitis virus	7
Outbreak of KPC-producing Klebsiella pneumoniae ST15 strains in a Chinese tertiary hospital: resistance and virulence analyses	7
Comparative genomics and pangenomics of vancomycin-resistant and susceptible Enterococcus faecium from Irish hospitals	7
Longitudinal analysis of the impact of oral contraceptive use on the gut microbiome	7
Comparative effects of viral-transport-medium heat inactivation upon downstream SARS-CoV-2 detection in patient samples	7
Paediatric bacterial meningitis in the USA: outcomes and healthcare resource utilization of nosocomial versus community-acquired infection	7
The bacteriology of diabetic foot ulcers and infections and incidence of Staphylococcus aureus Small Colony Variants	7
Seroprevalence of parechovirus A1, A3 and A4 antibodies in Yamagata, Japan, between 1976 and 2017	7
Prototheca bovis, a unicellular achlorophyllous trebouxiophyte green alga in the healthy human intestine	7
An isothermal amplification-coupled dipstick for the rapid detection of COVID-19	7
Reporting of RT-PCR cycle threshold (Ct) values during the first wave of COVID-19 in Qatar improved result interpretation in clinical and public health settings	7
Shigella escapes lysosomal degradation through inactivation of Rab31 by IpaH4.5	7
First identification of bla NDM-5 producing Escherichia coli from neonates and a HIV infected adult in Tanzania	7
Comparative analyses of clinical features reveal the severity of human adenovirus type 55 and type 7 in acute respiratory tract infections	7
Plant-associated Pseudomonas aeruginosa strains harbour multiple virulence traits critical for human infection	7
JMM Profile: Avian paramyxovirus type-1 and Newcastle disease: a highly infectious vaccine-preventable viral disease of poultry with low zoonotic potential	7
Emergence of clinical isolates of Pseudomonas asiatica and Pseudomonas monteilii from Japan harbouring an acquired gene encoding a carbapenemase VIM-2	7
JMM Profile: Achromobacter xylosoxidans: the cloak-and-dagger opportunist	7
A large food-borne outbreak of campylobacteriosis in kindergartens and primary schools in Pescara, Italy, May–June 2018	7
Emergence of mgrB locus deletion mediating polymyxin resistance in pandemic KPC-producing Klebsiella pneumoniae ST15 lineage	7
Use of Sysmex UF-5000 flow cytometry in rapid diagnosis of urinary tract infection and the importance of validating carryover rates against bacterial count cut-off	6
Difference in drug susceptibility distribution and clinical characteristics between Mycobacterium avium and Mycobacterium intracellulare lung diseases in Shanghai, China	6
A stop–gain mutation in sigma factor SigH (MAB_3543c) may be associated with tigecycline resistance in Mycobacteroides abscessus	6
High mortality by nosocomial infections caused by carbapenem-resistant P. aeruginosa in a referral hospital in Brazil: facing the perfect storm	6
Carbapenem-resistant Klebsiella pneumoniae colonization and infection is associated with lower overall survival in a cohort of haematopoietic stem-cell transplantation patients: mechanism of resistanc	6
Novel 16S rRNA methyltransferase RmtE3 in Acinetobacter baumannii ST79	6
Gut microbiota associated with the mitigation effect of synbiotics on adverse events of neoadjuvant chemotherapy in patients with esophageal cancer: A retrospective exploratory study	6
Performance of targeted next-generation sequencing in the detection of respiratory pathogens and antimicrobial resistance genes for children	6
In vitro activity of bedaquiline against Mycobacterium avium complex	6
Quality indicators for blood culture: 1 year of monitoring with BacT/Alert Virtuo at a French hospital	6
JMM Profile: Vibrio cholerae: an opportunist of human crises	6
Clinical efficacy and safety of antifungal drugs for the treatment of Candida parapsilosis infections: a systematic review and network meta-analysis	6
Hospital transmission of borderline oxacillin-resistant Staphylococcus aureus evaluated by whole-genome sequencing	6
Frequency of and risk factors for carbapenem-resistant Enterobacteriaceae	6
Treating autism spectrum disorder by intervening with gut microbiota	5
Light Scattering Technology and MALDI-TOF MS in the microbiological fast-track of bloodstream infections: potential impact on antimicrobial treatment choices in a real-life setting	5
Phenotypic and molecular evaluation of biofilm formation in Klebsiella pneumoniae carbapenemase (KPC) isolates obtained from a hospital of Pelotas, RS, Brazil	5
Clinical characteristics and antibody response to SARS-CoV-2 spike 1 protein using VITROS Anti-SARS-CoV-2 antibody tests in COVID-19 patients in Japan	5
Challenges on the development of a pseudotyping assay for Zika glycoproteins	5
Comparative study of multidrug-resistant Enterococcus faecium obtained from different hosts	5
Trends in Stenotrophomonas maltophilia antibiotic resistance rates in the United States Veterans Affairs Health System	5
Identification of micro-organism from positive blood cultures: comparison of three different short culturing methods to the Rapid Sepsityper workflow	5
Stenotrophomonas maltophilia phenotypic and genotypic features through 4-year cystic fibrosis lung colonization	5
Effects of calcineurin inhibitors, cyclosporine A and tacrolimus (FK506), on the activity of antifungal drugs against Candida spp.	5
Microbiome analysis of feline odontoclastic resorptive lesion (FORL) and feline oral health	5
JMM Profile: Bartonella bacilliformis: a forgotten killer	5
Serum levels of type I interferon (IFN-I) is associated with the severity of COVID-19	5
Improved diagnosis of gastrointestinal infections using a semi-automated multiplex real-time PCR for detection of enteropathogens	5
Anti-inflammatory effects of curcumin-loaded niosomes on respiratory syncytial virus infection in a mice model	5
Molecular characterization of methicillin-resistant and -susceptible Staphylococcus aureus recovered from hospital personnel	5
The epidemiology of AmpC-producing Escherichia coli isolated from dairy cattle faeces on pasture-fed farms	5
The immunomodulatory activity of secnidazole–nitazoxanide in a murine cryptosporidiosis model	5
Development of an immunochromatographic lateral flow assay to rapidly detect OXA-23-, OXA-40-, OXA-58- and NDM-mediated carbapenem resistance determinants in Acinetobacter baumannii	5
Massive sequencing of the V3–V4 hypervariable region of bronchoalveolar lavage from patients with COVID-19 and VAP reveals the collapse of the pulmonary microbiota	5
Sensitivity and specificity of DPP® Fever Panel II Asia in the diagnosis of malaria, dengue and melioidosis	5
JMM Profile: Salmonella enterica serovar Gallinarum, biovars Pullorum and Gallinarum	5
Genomic epidemiology of the opportunistic pathogen Staphylococcus coagulans from companion dogs	5
2-Alkyl-4-quinolone quorum sensing molecules are biomarkers for culture-independent Pseudomonas aeruginosa burden in adults with cystic fibrosis	5
Cervicovaginal loads of Gardnerella spp. are increased in immunocompetent women with persistent high-risk human papillomavirus infection	5
Activity of ceftolozane/tazobactam against Gram-negative isolates among different infections in Hong Kong: SMART 2017–2019	5
Is there an optimal method to detach Candida albicans biofilm from dental materials?	5
Antifungal activity and potential mechanism of berberine hydrochloride against fluconazole-resistant Candida albicans	5
Shiga toxin-producing Escherichia coli clonal complex 32, including serotype O145:H28, in the UK and Ireland	5
Diazepam’s antifungal activity in fluconazole-resistant Candida spp. and biofilm inhibition in C. albicans: evaluation of the relationship with the proteins ALS3 and SAP5	5
Adaptation of gltA and ssrA assays for diversity profiling by Illumina sequencing to identify Bartonella henselae, B. clarridgeiae and B. koehlerae	5

To zinc or not to zinc for COVID-19 prophylaxis or treatment?	4
Chitosan propolis nanocomposite alone or in combination with apramycin: an alternative therapy for multidrug-resistant Salmonella Typhimurium in rabbits: in vitro and in vivo study	4
Challenges and opportunities in the development of novel antimicrobial therapeutics for cystic fibrosis	4
VicRK and CovR polymorphisms in Streptococcus mutans strains associated with cardiovascular infections	4
Evaluation of ResistancePlus MG FleXible, a ‘near-patient’ test for the detection of Mycoplasma genitalium and macrolide resistance mutations, using freshly collected clinical samples	4
A longitudinal study of antibody responses to selected host antigens in rheumatic fever and rheumatic heart disease	4
Helicobacter suis and Helicobacter pylori infection in a colony of research macaques: characterization and clinical correlates	4
The acceptability of testing contacts of confirmed COVID-19 cases using serial, self-administered lateral flow devices as an alternative to self-isolation	4
Detection of multiple extensively-drug resistant hypervirulent Klebsiella pneumoniae clones from patients with ventilator-associated pneumonia in Egypt	4
Network-wide analysis of the Serosep EntericBio Gastro Panel 2 for the detection of enteric pathogens in Public Health Wales microbiology laboratories	4
RshA mutations contributing to tigecycline resistance in Mycobacteroides abscessus	4
Rapid and accurate detection of Shiga toxin-producing Escherichia coli (STEC) serotype O157 : H7 by mass spectrometry directly from the isolate, using 10 potential biomarker peaks and machine learning	4
Sample collection and transport strategies to enhance yield, accessibility, and biosafety of COVID-19 RT-PCR testing	4
Evaluation of the World Health Organization Global Invasive Bacterial Vaccine-Preventable Disease (IB-VPD) Surveillance Network’s Laboratory External Quality Assessment Programme, 2014–2019	4
Absence of SARS-CoV-2 in the air and on the surfaces within the school environment	4
Characterization of bla NDM-5-harbouring Klebsiella pneumoniae sequence type 11 international high-risk clones isolated from clinical samples in Yangon General Hospital, a tertiary-care ho	4
Conventional PCR as a reliable method for diagnosing invasive mucormycosis in resource-limited settings	4
Study of the impact of cultivation conditions and peg surface modification on the in vitro biofilm formation of Staphylococcus aureus and Staphylococcus epidermidis in a system analogous to the Calgar	4
In vitro activity of fidaxomicin against nontuberculosis mycobacteria	4
Gram-negative bacilli bacteremia: a 7 year retrospective study in a referral Brazilian tertiary-care teaching hospital	4
Fidaxomicin has high in vitro activity against Mycobacterium tuberculosis	4
Microbial–stem cell interactions in periodontal disease	4
Isolation of Clostridioides difficile PCR Ribotype 027 from single-use hospital gown ties	4
Group B streptococcal infections in infants in Iceland: clinical and microbiological factors	4
Combined oropharyngeal/nares and nasopharyngeal swab sampling remain effective for molecular detection of SARS-CoV-2 Omicron variant	4
Rapid macrolide and amikacin resistance testing for Mycobacterium abscessus in people with cystic fibrosis	4
Gut bacteria and sex differences in colorectal cancer	4
Urinary tract infections: a review of the current diagnostics landscape	4
Clostridioides difficile toxins enhanced the in vitro production of CXC chemokine ligand 2 and tumor necrosis factor-α via Toll-like receptors in macrophages	4
Molecular mechanisms of macrolide and fluoroquinolone resistance among Korean isolates of Mycoplasma genitalium over a period of five years 2014–2019	4
JMM Profile: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)	4
Increased biofilm formation by Staphylococcus aureus clinical isolates on surfaces covered with plasma proteins	4
Clinical relevance and antimicrobial susceptibility profile of the unknown human pathogen Corynebacterium aurimucosum	4
Effect of multiple freeze–thaw cycles on the detection of anti-SARS-CoV-2 IgG antibodies	4
Enhanced monitoring of healthcare shower water in augmented and non-augmented care wards showing persistence of Pseudomonas aeruginosa despite remediation work	4
Prevalence of genotypic antimicrobial resistance in clinical Shiga toxin-producing Escherichia coli in Norway, 2018 to 2020	4
Comparative in vitro activities of omadacycline, eravacycline and tigecycline against non-ESBL-producing, ESBL-producing and carbapenem-resistant isolates of K. pneumoniae	4
Characterization of a carbapenem-resistant Citrobacter amalonaticus coharbouring bla IMP-4 and qnrs1 genes	4