Journal of Medical Microbiology

Article	Citations
An end-point multiplex RT-PCR for SARS-CoV-2, Influenza A and B detection, including simultaneous RNAse P amplification: a timely tool for more accessible differential diagnosis	44
Evaluation of anti-biofilm effect of antimicrobial sonodynamic therapy-based periodontal ligament stem cell-derived exosome-loaded kojic acid on Enterococcus faecalis biofilm	36
Matrix-assisted laser desorption/ionization-time of flight MS as a tool for clonal discrimination in Streptococcus dysgalactiae subsp. equisimilis	28
A nanoluciferase-tagged Schmallenberg virus (SBV): an efficient tool for measuring and tracking viral infection dynamics	26
A viable but nonculturable state of Mycobacterium avium in response to macrolide antibiotics: a recipe for relapses?	26
Changes in the expression of miR-103a and miR-21: a functional diagnosis of toxocariasis in rats	25
Corrigendum: Fosfomycin resistance in extended-spectrum beta-lactamase producing Escherichia coli isolated from urinary tract-infected patients in a tertiary care hospital	25
Clinical evaluation of two commercial PCR kits for the detection of nonviral sexually transmitted infections	24
Evaluation of the World Health Organization Global Invasive Bacterial Vaccine-Preventable Disease (IB-VPD) Surveillance Network’s Laboratory External Quality Assessment Programme, 2014–2019	23
Changes in serum amyloid A, plasma high-density lipoprotein cholesterol and apolipoprotein A-I as useful biomarkers for Mycobacterium tuberculosis infection	22
Class 1 integrons in clinical and swine industry isolates of Salmonella Typhimurium from Colombia, dating 1997 to 2017	22
Limitations of antimicrobial agent choice based on MIC value against Pseudomonas aeruginosa	21
Targeted detection of Helicobacter pylori resistance to clarithromycin and levofloxacin using single-cell Raman spectroscopy	20
Identification of consensus head and neck cancer-associated microbiota signatures: a systematic review and meta-analysis of 16S rRNA and The Cancer Microbiome Atlas datasets	20
Extended-spectrum beta-lactamases: definition, history, an update on their genetic environment and detection methods	20
Corrigendum: Genomic characterization of Haemophilus influenzae harbouring an exogenous resistance gene	19
Fosfomycin resistance in extended-spectrum beta-lactamase producing Escherichia coli isolated from urinary tract-infected patients in a tertiary care hospital	19
Effects of novel organoantimony compounds on the fungal pathogen Cryptococcus neoformans	18
Erratum: The Ebola virus – going beyond the bleeding edge	18
Technologies to decontaminate bacterial biofilm on hospital surfaces: a potential new role for cold plasma?	18
Novel automated antifungal susceptibility testing system for yeasts based on dual-detection algorithm of turbidimetry and colorimetry	18
Clinical and public health implications of increasing notifications of LEE-negative Shiga toxin-producing Escherichia coli in England, 2014–2022	18
CXCR2 perturbation promotes Staphylococcus aureus implant-associated infection	17
Erratum: Dysbiosis–epigenetics–immune system interaction and ageing health problems	17
The human bile salt sodium deoxycholate induces metabolic and cell envelope changes in Salmonella Typhi leading to bile resistance	17

Effector genes of type III secretion system and biofilm formation in virulent Pseudomonas aeruginosa isolates carrying bla KPC-2 and bla PDC-5 genes in hospital environment	17
Utility of in-house and commercial PCR assay in diagnosis of Covid-19 associated mucormycosis in an emergency setting in a tertiary care center	17
In vitro and in silico assessment of anti-biofilm and anti-quorum sensing properties of 2,4-Di-tert butylphenol against Acinetobacter baumannii	16
Targeted ‘knock out’ therapy with a combination antimicrobial regimen restores treatment options in the management of extensively drug-resistant carbapenemase-producing organisms	16
Localized outbreaks of Pseudomonas aeruginosa belonging to international high-risk clones in a south Indian hospital	16
Sertraline has in vitro activity against both mature and forming biofilms of different Candida species	16
Mechanism of azole resistance in Candida glabrata isolates from India: clinical vs. induced perspectives	16
Gut microbiota associated with the mitigation effect of synbiotics on adverse events of neoadjuvant chemotherapy in patients with esophageal cancer: A retrospective exploratory study	16
Genetic characteristics of azithromycin-resistant Neisseria gonorrhoeae collected in Hyogo, Japan during 2015–2019	15
The lingering legacy of one letter in antimicrobial susceptibility testing	15
Genetic association of gut microbiota with osteoarthritis: a multivariable Mendelian randomization study considering medication use	15
Protein expression profiling, in silico classification and pathway analysis of cariogenic bacteria Streptococcus mutans under bacitracin stress conditions	14
Concordance between upper and lower airway microbiota in children with cystic fibrosis	14
Delays to treatment initiation and emergence of drug resistance among new adult tuberculosis patients in Tigray, Northern Ethiopia	14
Chronic Strongyloides stercoralis infection in Fijian migrants to the UK	14
Genomic insights into extended-spectrum β-lactamase- and plasmid-borne AmpC-producing Escherichia coli transmission between humans and livestock in rural Cambodia	13
SARS-CoV-2 in outdoor air following the third wave lockdown release, Portugal, 2021	13
Development of multiplex real-time PCR for detection of clarithromycin resistance genes for the Mycobacterium abscessus group	13
MARGINAL NOTES, June 2023 – running on empty	13
Introducing biomarkers for invasive fungal disease in haemato-oncology patients: a single-centre experience	13
Launching the Clostridioides difficile collection	13
The emerging threat of Japanese encephalitis in Australia: is it the time to worry?	12
Lessons learned: drive-through COVID-19 clinic testing during an adaptive epidemic response and a point-of-care test assessment of a computer-read rapid lateral flow immunoassay with fluorescence-base	12
In vitro activity of imipenem/relebactam against piperacillin/tazobactam-resistant and meropenem-resistant non-Morganellaceae Enterobacterales and Pseudomonas aeruginosa collected from patients with b	12
Ozone water enema activates SIRT1-Nrf2/HO-1 pathway to ameliorate gut dysbiosis in mice receiving COVID-19 patient-derived faecal microbiota	12
Evaluation of the combined use of the Sepsityper Kit with the Clearview PBP2a assay for identification of staphylococci strains and detection of their methicillin resistance directly from positive blo	11
Changes in the gut microbiota in mice exposed to chronic intermittent hypoxia	11
Multi-drug-resistant tuberculosis and its associated factors among pulmonary tuberculosis patients linked to first-line anti-tuberculosis drugs in north-west Ethiopia	11
Interpreting diagnosis outcomes for tuberculosis to timely and reliably predict non-tuberculosis mycobacteria isolation	11
Antifungal activity and potential mechanism of action of Huangqin decoction against Trichophyton rubrum	11
Quantifying patient- and hospital-level antimicrobial resistance dynamics in Staphylococcus aureus from routinely collected data	11
Phenotypic diversity of type III secretion system activity in enteropathogenic Escherichia coli clinical isolates	11
Expansion of hantavirus infection during the SARS-CoV-2 pandemic in Bosnia and Herzegovina, 2021	10
MARGINAL NOTES, August, 2023. Something in the air	10
Immunoassay-based evaluation of rOmp28 protein as a candidate for the identification of Brucella species	10
New generation fluoroquinolone sitafloxacin could potentially overcome the majority levofloxacin and moxifloxacin resistance in multidrug-resistant Mycobacterium tuberculosis	10
Mucormycosis-causing fungi in humans: a meta-analysis establishing the phylogenetic relationships using internal transcribed spacer (ITS) sequences	10
Towards an update on the antimicrobial use in Adult Care Units in Brazil: insights from multi-hospital prevalence study	10
Mycoplasma genitalium molecular typing in men with non-gonococcal urethritis discriminates between phylogenetic clusters based on sexual preference and antibiotic resistance	10
Paecilomyces cicadae-fermented Radix astragali ameliorate diabetic nephropathy in mice by modulating the gut microbiota	10
Detection of IgM, IgG, IgA and neutralizing antibody responses to SARS-CoV-2 infection and mRNA vaccination	10
Evaluation of in vitro activity of fosfomycin, and synergy in combination, in Gram-negative bloodstream infection isolates in a UK teaching hospital	9
A comparison of culture methods and polymerase chain reaction in detecting Clostridioides difficile from hospital surfaces	9
An isothermal amplification-coupled dipstick for the rapid detection of COVID-19	9
Long-term surveillance of group B Streptococcus strains isolated from infection and colonization in pregnant women and newborns	9
JMM profile: Loop-mediated isothermal amplification (LAMP): for the rapid detection of nucleic acid targets in resource-limited settings	9
Whole-genome analysis of Haemophilus influenzae strains isolated from persons with cystic fibrosis	9
Diagnostic yield of broad-range 16s rRNA gene PCR varies by sample type and is improved by the addition of qPCR panels targeting the most common causative organisms	9
Clinical characteristics and outcomes of viral respiratory infections in allogeneic haematopoietic stem cell transplantation recipients: a single-centre experience	9
Disinfection methods of dental unit waterlines contamination: a systematic review	9

The Apoprotein E4 isotype does not affect the severity of COVID-19 infection and other flu-like syndromes	9
Comparison of the bacterial microbiome in the pharynx and nasal cavity of persistent, intermittent carriers and non-carriers of Staphylococcus aureus	9
Clinical and microbiological investigation into mixed growth urine cultures	9
The changes of gut microbiota and metabolites in different drug-induced liver injuries	9
Evaluation of NG-Test CARBA 5 for the detection of carbapenemase-producing Gram-negative bacilli	9
Corynebacterium kroppenstedtii breast abscesses in context, a retrospective cohort study	9
Shaping the future of Leptospira serotyping	8
JMM Profile: Trichosporon yeasts: from superficial pathogen to threat for haematological-neutropenic patients	8
Latroeggtoxin-VI improves depression by regulating the composition and function of gut microbiota in a mouse model of depression	8
Molecular tracking of carbapenem-resistant Acinetobacter baumannii clinical isolates: a multicentre study over a 4-year period across eastern China	8
Repurposing the non-steroidal anti-inflammatory drug diflunisal as an adjunct therapy with amphotericin B against mucoralean fungi	8
Deciphering the impact of Acinetobacter baumannii on human health, and exploration of natural compounds as efflux pump inhibitors to treat multidrug resistance	8
The effect of daily usage of Listerine Cool Mint mouthwash on the oropharyngeal microbiome: a substudy of the PReGo trial	8
Development of novel broad-range pan-genus PCR assays for the detection of Tropheryma species	8
Colistin utilization at a tertiary hospital in South Africa: an opportunity for antimicrobial stewardship practices	8
Establishing breakpoints for amoxicillin/clavulanate and ampicillin/sulbactam for rapid antimicrobial susceptibility testing directly from positive blood culture bottles	8
Hidden bugs in a newly opened hospital: the distribution of skin microbiota among healthcare workers in a newly opened teaching hospital	8
Overview of US public health laboratory leadership development programmes and implementation opportunities	8
Robust prediction of colorectal cancer via gut microbiome 16S rRNA sequencing data	8
Exploring interspecies differences in ex vivo models of Pseudomonas aeruginosa keratitis: a comparative study of human, pig and sheep corneas	8
Transient reemergence of Bordetella parapertussis in France in 2022	8
Characterization of a Helicobacter pylori strain with high biofilm-forming ability	8
JMM Profiles for the Journal of Medical Microbiology: an update	8
Dilemma and a way out for bacterial biofilm research	8
Emergence of carbapenem-resistant Pseudomonas alcaligenes and Pseudomonas paralcaligenes clinical isolates with plasmids harbouring bla IMP-1 in Japan	8
Network-wide analysis of the Serosep EntericBio Gastro Panel 2 for the detection of enteric pathogens in Public Health Wales microbiology laboratories	8
Evaluation and validation of a commercial ELISA versus the in vitro toxin neutralization assay for determination of diphtheria anti-toxin in human serum	7
In vitro efficacy of antibiotic loaded calcium sulfate beads (Stimulan Rapid Cure) against polymicrobial communities and individual bacterial strains derived from diabetic foot infections	7
Abf1 negatively regulates the expression of EPA1 and affects adhesion in Candida glabrata	7
Susceptibility of Gram-negative bacteria from blood cultures assessed by a rapid antimicrobial susceptibility assay, the VITEK® Reveal™: a preliminary study	7
Serotype distribution and antimicrobial resistance of Streptococcus pneumoniae in paediatric patients in Japan (2020–2023)	7
In vitro activity of tubercidin against Mycobacterium tuberculosis and nontuberculosis Mycobacteria	7
Multiple mechanisms of linezolid resistance in Staphylococcus haemolyticus detected by whole-genome sequencing	7
A systematic approach to microbial forensics	7
Genomic characterization of colistin resistance in Klebsiella spp. under the pressure of colistin	7
Antimicrobial spectrum against wound pathogens and cytotoxicity of star-arranged poly-l-lysine-based antimicrobial peptide polymers	7
Clonal spread of ArmA- and OXA-23-coproducing Acinetobacter baumannii International Clone 2 in Brazil during the first wave of the COVID-19 pandemic	7
Invasive Aggregatibacter infection: shedding light on a rare pathogen in a retrospective cohort analysis	7
Integrated analysis of intestinal microbiota and host gene expression in colorectal cancer patients	7
JMM Profile: Brachyspira species: the causative agent of Avian Intestinal Spirochaetosis	7
Clinically healthy household dogs and cats as carriers of multidrug-resistant Salmonella enterica with variable R plasmids	6
Bacteria associated with infectious keratoconjunctivitis outbreak in confined lambs	6
Impact of extreme weather events on the occurrence of infectious diseases in Belgium from 2011 to 2021	6
Exploration of the distribution of intestinal bacteria in mice under normal and intestinal leakage (IBD) conditions	6
Combined oropharyngeal/nares and nasopharyngeal swab sampling remain effective for molecular detection of SARS-CoV-2 Omicron variant	6
Impact of the COVID-19 restrictions on the epidemiology of Cryptosporidium spp. in England and Wales, 2015–2021: a time series analysis	6
Characterization of invasive meningococcal disease case isolates in Atlantic Canada, 2014 to 2020: spatial–temporal variations of clones and predicted meningococcal B vaccine coverage	6
Efficacy of ceftobiprole in a murine model of bacteremia and disseminated infection	6
Evaluating the accuracy of the MBT Lipid Xtract Kit for assessing colistin resistance in comparison to broth microdilution	6
JMM Profile: Sindbis virus, a cause of febrile illness and arthralgia	6
Surveillance of carbapenem-resistant Klebsiella pneumoniae in a paediatric hospital in China revealed the dynamics of carbapenemase and the prevalence of ST2735 K. pneumoniae	6
mgpB genotyping and genetic diversity for antimicrobial resistance of Mycoplasma genitalium	6
Sensitivity and specificity of DPP® Fever Panel II Asia in the diagnosis of malaria, dengue and melioidosis	6
Xpert MTB/RIF Ultra performance on bronchial specimens in diagnosing pulmonary tuberculosis in Vancouver, Canada	6
Massive sequencing of the V3–V4 hypervariable region of bronchoalveolar lavage from patients with COVID-19 and VAP reveals the collapse of the pulmonary microbiota	6
Antifungal potential of silver nanoparticles stabilized with the flavonoid naringenin	6
Evaluation of GeneXpert MTB/Rif Ultra assay performance on formalin-fixed paraffin-embedded tissues for Mycobacterium tuberculosis detection	6
Next-generation sequencing for the diagnosis of Listeria monocytogenes meningoencephalitis: a case series of five consecutive patients	6
Population structure, antibiotic resistance and molecular characteristics of Streptococcus pneumoniae causing invasive disease in Hubei, China	6
Predominance of community-associated, methicillin-susceptible Staphylococcus aureus infections among hospitalized children and adolescents	6
Altered intestinal Streptococcus anginosus and 5α-reductase gene levels in patients with hepatocellular carcinoma and elevated Bacteroides stercoris in atezolizumab/bevacizumab non-responders	6
Effect of co-administration of lactobacilli S-layer proteins on immune response against S-layer proteins from pathogenic Clostridioides difficile	6
BCG and BCGΔBCG1419c transiently protect hypersusceptible I/St mice and induce different influx of macrophages and neutrophils during pulmonary tuberculosis	6
Corrigendum: Lactobacillus fermentum strains of dairy product origin adhere to mucin and survive digestive juices	5
Evaluation of antioxidant status and oxidative stress markers in HTLV-1 infected individuals: correlation with the severity of virus-induced complications	5
PET-CT for characterising TB infection (TBI) in immunocompetent subjects: a systematic review	5
Evaluation of the efficacy of tongue swab and saliva as samples for testing COVID-19 infection in symptomatic cases in comparison with nasopharyngeal swab	5
Assessing antimicrobial resistance profiles of Salmonella enterica in the pork production system	5
A retrospective cross-sectional observational study of SARS-CoV-2 reinfection in La Ribera Health Department, Valencia, Spain	5
Bone and joint tuberculosis in paediatrics: a 13-year retrospective study	5
JMM Profile: West Nile virus	5
Inactivation of Candida albicans, Staphylococcus aureus and multidrug-resistant Escherichia coli with dielectric barrier discharged cold atmospheric plasma: a comparative study with antimicrobial drug	5
The cystic fibrosis pathogen Achromobacter xylosoxidans inhibits biofilm formation of Pseudomonas aeruginosa	5
Prediction of genome-wide imipenem resistance features in Klebsiella pneumoniae using machine learning	5
Rapid determination of antimicrobial susceptibility of Gram-negative bacteria from clinical blood cultures using a scattered light-integrated collection device	5
Combining Gram stain and 16S qPCR improved diagnostic accuracy for suspected pneumonia and could become a new metric in the rapid diagnosis of lower respiratory tract infections	5
Molecular characterization of Pseudomonas aeruginosa from diabetic foot infections in Tunisia	5
Lower gastrointestinal tract dysbiosis in persistent critical illness: a systematic review	5
Emergence of Neisseria meningitidis W South American sublineage strain variant in Brazil: disease and carriage	5
Advancing rapid diagnostics for bloodstream infections: a perspective on scattered light integrated collection technology	5

Clostridioides difficile detection and infection in children: are they just small adults?	5
Oral microbiota signatures in obesity with or without acanthosis nigricans in a Chinese cohort	5
16S rDNA analysis of osteoporotic rats treated with osteoking	5
Molecular typing of reduced susceptibility of Acinetobacter calcoaceticus–baumannii complex to Chlorhexidine in Turkey by pulsed-field gel electrophoresis	5
Commercial molecular diagnostic methods in infectious diseases: keeping up with the pathogens	5
The Ebola virus – going beyond the bleeding edge	5
Microbiological and molecular screening of Candida spp. isolated from genital tract of asymptomatic pregnant women	5
Effect of proton pump inhibitors on susceptibility and melanogenesis of Sporothrix species	5
First identification of bla NDM-5 producing Escherichia coli from neonates and a HIV infected adult in Tanzania	5