OOIR: Observatory of International Research

Papers

(The TQCC of Journal of Heredity is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
A Fast and Efficient Single-stranded Genomic Library Preparation Method Optimized for Ancient DNA	82
Landscape Genomics to Enable Conservation Actions: The California Conservation Genomics Project	62
What IsNe, Anyway?	54
Avian Coloration Genetics: Recent Advances and Emerging Questions	46
Sex Ratios in a Warming World: Thermal Effects on Sex-Biased Survival, Sex Determination, and Sex Reversal	33
Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (Felis catus) and Asian Leopard Cat (Prionailurus bengalensis)	32
Nile Tilapia: A Model for Studying Teleost Color Patterns	31
Implications of Large-Effect Loci for Conservation: A Review and Case Study with Pacific Salmon	31
A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus	31
Extensive Linkage and Genetic Coupling of Song and Preference Loci Underlying Rapid Speciation inLaupalaCrickets	25
CRISPR Knockouts of pmela and pmelb Engineered a Golden Tilapia by Regulating Relative Pigment Cell Abundance	22
Chromosome-Level Genome Assembly Reveals Dynamic Sex Chromosomes in Neotropical Leaf-Litter Geckos (Sphaerodactylidae:Sphaerodactylus)	20
Genetic rescue remains underused for aiding recovery of federally listed vertebrates in the United States	19
A Reference Genome Assembly of American Bison,Bison bison bison	18
Genome Assembly of SalicaceaePopulus deltoides(Eastern Cottonwood)I-69Based on Nanopore Sequencing and Hi-C Technologies	18
Facultative Parthenogenesis in California Condors	17
Limited Evidence for Parallel Evolution Among Desert-AdaptedPeromyscusDeer Mice	17
Indirect Genetic Effects: A Cross-disciplinary Perspective on Empirical Studies	16
Seizing the moment: The opportunity and relevance of the California Conservation Genomics Project to state and federal conservation policy	16
The Combined Effect of Haplodiplonty and Partial Clonality on Genotypic and Genetic Diversity in a Finite Mutating Population	16
A Chromosome-Level Genome Assembly of the Parasitoid Wasp,Cotesia glomerata(Hymenoptera: Braconidae)	15
Feather Gene Expression Elucidates the Developmental Basis of Plumage Iridescence in African Starlings	15
Powerful Identification of Large Quantitative Trait Loci Using Genome-Wide R/glmnet-Based Regression	15
Sex and Asex: A Clonal Lexicon	15
Sequence Analysis and Ontogenetic Expression Patterns of Cone Opsin Genes in the Bluefin Killifish (Lucania goodei)	14

Low Persistence of Genetic Rescue Across Generations in the Arctic Fox (Vulpes lagopus)	14
Natural history collections as a resource for conservation genomics: Understanding the past to preserve the future	13
The revised reference genome of the leopard gecko (Eublepharis macularius) provides insight into the considerations of genome phasing and assembly	13
Where to draw the line? Expanding the delineation of conservation units to highly mobile taxa	13
Host, Microbiome, and Complex Space: Applying Population and Landscape Genetic Approaches to Gut Microbiome Research in Wild Populations	12
Big Data in Conservation Genomics: Boosting Skills, Hedging Bets, and Staying Current in the Field	12
Chromosome-Level Reference Genome Assembly for the American Pika (Ochotona princeps)	12
A Genome forBidens hawaiensis: A Member of a Hexaploid Hawaiian Plant Adaptive Radiation	12
Exploring the Genetic Consequences of Clonality in Haplodiplontic Taxa	12
Pervasive Genomic Signatures of Local Adaptation to Altitude Across Highland Specialist Andean Hummingbird Populations	11
Polygenic Basis and the Role of Genome Duplication in Adaptation to Similar Selective Environments	11
Relative Precision of the Sibship and LD Methods for Estimating Effective Population Size With Genomics-Scale Datasets	11
Two Variants of KIT Causing White Patterning in Stock-Type Horses	11
Genomic Assessment of Global Population Structure in a Highly Migratory and Habitat Versatile Apex Predator, the Tiger Shark (Galeocerdo cuvier)	11
Are Genomic Updates of Well-Studied Species Worth the Investment for Conservation? A Case Study of the Critically Endangered Magdalena River Turtle	10
Mitochondria as environments for the nuclear genome in Drosophila: mitonuclear G×G×E	10
Avian Introgression Patterns are Consistent With Haldane’s Rule	10
The phylogeny of California, and how it informs setting multispecies conservation priorities	10
A lizard is never late: Squamate genomics as a recent catalyst for understanding sex chromosome and microchromosome evolution	9
Frequent Paternal Mitochondrial Inheritance and Rapid Haplotype Frequency Shifts in Copepod Hybrids	8
Multi-Copy Gene Family Evolution on the Avian W Chromosome	8
Rapid Evolution of Seed Dormancy During Sunflower De-Domestication	8
On the Form and Origins of the Bizarre Sex Chromosomal System of the Mandarin Vole	8
Extremely Low mtDNA Diversity and High Genetic Differentiation Reveal the Precarious Genetic Status of Dugongs in New Caledonia, South Pacific	8
Reference Genome Assembly of the Big Berry Manzanita (Arctostaphylos glauca)	8
A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale	8
Analysis of Genetic Diversity in the American Standardbred Horse Utilizing Short Tandem Repeats and Single Nucleotide Polymorphisms	7
Numt Parser: Automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera	7
Opinion: Genetic Conflict With Mobile Elements Drives Eukaryotic Genome Evolution, and Perhaps Also Eukaryogenesis	7
Population Genomics of New Zealand Pouched Lamprey (kanakana; piharau;Geotria australis)	7
Phylogeography of Cedros and Tiburón Island Mule Deer in North America’s Desert Southwest	7
Reference Genome of the Northwestern Pond Turtle,Actinemys marmorata	7
Social Selection and the Evolution of Maladaptation	7
Temporal Analysis of Effective Population Size and Mating System in a Social Wasp	7
Reference genome for the California ribbed mussel,Mytilus californianus, an ecosystem engineer	7
The Indirect Genetic Effect Interaction Coefficientψ: Theoretically Essential and Empirically Neglected	7
An Annotated Draft Genome for the Andean Bear,Tremarctos ornatus	7
Introgression ofASIPandTYRP1Alleles Explains Coat Color Variation in Valais Goats	6
Extensive genome introgression between domestic ferret and European polecat during population recovery in Great Britain	6
Assessing Population Structure and Genetic Diversity in US Suffolk Sheep to Define a Framework for Genomic Selection	6
A Synthesis of Game Theory and Quantitative Genetic Models of Social Evolution	6
Little Sharks in a Big World: Mitochondrial DNA Reveals Small-scale Population Structure in the California Horn Shark (Heterodontus francisci)	6
Weighted Single-Step GWAS for Body Mass Index and Scans for Recent Signatures of Selection in Yorkshire Pigs	6
Genetic Diversity and Connectivity in Plant Species Differing in Clonality and Dispersal Mechanisms in Wetland Island Habitats	5
Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes)	5
A tale of two paths: The evolution of mitochondrial recombination in bivalves with doubly uniparental inheritance	5
Population Genomic Analyses Confirm Male-Biased Mutation Rates in Snakes	5
A Reference Genome Assembly of the Bobcat, Lynx rufus	5
Reference genome for the American rubyspot damselfly, Hetaerina americana	5
Reference genome of the rubber boa,Charina bottae(Serpentes: Boidae)	5

Evolutionary potential mitigates extinction risk under climate change in the endangered southwestern willow flycatcher	5
Impacts of Fire on Butterfly Genetic Diversity and Connectivity	5
A draft reference genome of the red abalone, Haliotis rufescens, for conservation genomics	5
Assembly of a Hybrid Formica aquilonia × F. polyctena Ant Genome From a Haploid Male	5
Estimating phylogenies from genomes: A beginners review of commonly used genomic data in vertebrate phylogenomics	5
Correlated Population Genetic Structure in a Three-Tiered Host-Parasite System: The Potential for Coevolution and Adaptive Divergence	5
Social Effects on Annual Fitness in Red Squirrels	5
Approximating the Coalescent Under Facultative Sex	5
DNA Content Variation and SNP Diversity Within a Single Population of Asexual Snails	5
A highly contiguous genome assembly for the California quail (Callipepla californica)	5