Journal of Heredity

Article	Citations
A Fast and Efficient Single-stranded Genomic Library Preparation Method Optimized for Ancient DNA	70
Genomic Features of Parthenogenetic Animals	54
Landscape Genomics to Enable Conservation Actions: The California Conservation Genomics Project	52
What IsNe, Anyway?	41
Avian Coloration Genetics: Recent Advances and Emerging Questions	39
Selective Interference and the Evolution of Sex	35
Consequences of Single-Locus and Tightly Linked Genomic Architectures for Evolutionary Responses to Environmental Change	35
Sex Ratios in a Warming World: Thermal Effects on Sex-Biased Survival, Sex Determination, and Sex Reversal	30
Nile Tilapia: A Model for Studying Teleost Color Patterns	29
Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (Felis catus) and Asian Leopard Cat (Prionailurus bengalensis)	28
Implications of Large-Effect Loci for Conservation: A Review and Case Study with Pacific Salmon	25
A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus	24
Extensive Linkage and Genetic Coupling of Song and Preference Loci Underlying Rapid Speciation inLaupalaCrickets	18
Chromosome-Level Genome Assembly Reveals Dynamic Sex Chromosomes in Neotropical Leaf-Litter Geckos (Sphaerodactylidae:Sphaerodactylus)	17
Extremely Widespread Parthenogenesis and a Trade-Off Between Alternative Forms of Reproduction in Mayflies (Ephemeroptera)	17
Genetic Diversity and Connectivity of Southern Right Whales (Eubalaena australis) Found in the Brazil and Chile–Peru Wintering Grounds and the South Georgia (Islas Georgias del Sur) Feeding Ground	16
CRISPR Knockouts of pmela and pmelb Engineered a Golden Tilapia by Regulating Relative Pigment Cell Abundance	16
A De Novo MITF Deletion Explains a Novel Splashed White Phenotype in an American Paint Horse	15
Genetic Diversity and Population Structure of Dromedary Camel-Types	14
A Reference Genome Assembly of American Bison,Bison bison bison	14
Genome Assembly of SalicaceaePopulus deltoides(Eastern Cottonwood)I-69Based on Nanopore Sequencing and Hi-C Technologies	13
Feather Gene Expression Elucidates the Developmental Basis of Plumage Iridescence in African Starlings	13
Limited Evidence for Parallel Evolution Among Desert-AdaptedPeromyscusDeer Mice	13
The Combined Effect of Haplodiplonty and Partial Clonality on Genotypic and Genetic Diversity in a Finite Mutating Population	13
Disentangling Complex Inheritance Patterns of Plant Organellar Genomes: An Example From Carrot	12

Indirect Genetic Effects: A Cross-disciplinary Perspective on Empirical Studies	12
Sequence Analysis and Ontogenetic Expression Patterns of Cone Opsin Genes in the Bluefin Killifish (Lucania goodei)	12
Seizing the moment: The opportunity and relevance of the California Conservation Genomics Project to state and federal conservation policy	12
New Genetic Insights About Hybridization and Population Structure of Hawksbill and Loggerhead Turtles From Brazil	12
Powerful Identification of Large Quantitative Trait Loci Using Genome-Wide R/glmnet-Based Regression	11
Sex and Asex: A Clonal Lexicon	11
Low Persistence of Genetic Rescue Across Generations in the Arctic Fox (Vulpes lagopus)	11
A Genome forBidens hawaiensis: A Member of a Hexaploid Hawaiian Plant Adaptive Radiation	10
Chromosome-Level Reference Genome Assembly for the American Pika (Ochotona princeps)	10
A Chromosome-Level Genome Assembly of the Parasitoid Wasp,Cotesia glomerata(Hymenoptera: Braconidae)	10
Facultative Parthenogenesis in California Condors	10
Host, Microbiome, and Complex Space: Applying Population and Landscape Genetic Approaches to Gut Microbiome Research in Wild Populations	10
Mitochondria as environments for the nuclear genome in Drosophila: mitonuclear G×G×E	10
Genomic Assessment of Global Population Structure in a Highly Migratory and Habitat Versatile Apex Predator, the Tiger Shark (Galeocerdo cuvier)	10
The Influence of Environmental Variation on the Genetic Structure of a Poison Frog Distributed Across Continuous Amazonian Rainforest	9
Where to draw the line? Expanding the delineation of conservation units to highly mobile taxa	9
Big Data in Conservation Genomics: Boosting Skills, Hedging Bets, and Staying Current in the Field	9
The phylogeny of California, and how it informs setting multispecies conservation priorities	9
Are Genomic Updates of Well-Studied Species Worth the Investment for Conservation? A Case Study of the Critically Endangered Magdalena River Turtle	9
Two Variants of KIT Causing White Patterning in Stock-Type Horses	9
Exploring the Genetic Consequences of Clonality in Haplodiplontic Taxa	9
Allele-Specific Expression and Evolution of Gene Regulation Underlying Acute Heat Stress Response and Local Adaptation in the Copepod Tigriopus californicus	8
Macroevolutionary Patterns of Sexual Size Dimorphism Among African Tree Frogs (Family: Hyperoliidae)	8
Avian Introgression Patterns are Consistent With Haldane’s Rule	8
Relative Precision of the Sibship and LD Methods for Estimating Effective Population Size With Genomics-Scale Datasets	8
The revised reference genome of the leopard gecko (Eublepharis macularius) provides insight into the considerations of genome phasing and assembly	8
Pervasive Genomic Signatures of Local Adaptation to Altitude Across Highland Specialist Andean Hummingbird Populations	8
Mitogenomes Reveal Multiple Colonization of Mountains by Rattus in Sundaland	8
Genetic rescue remains underused for aiding recovery of federally listed vertebrates in the United States	8
Frequent Paternal Mitochondrial Inheritance and Rapid Haplotype Frequency Shifts in Copepod Hybrids	7
Multi-Copy Gene Family Evolution on the Avian W Chromosome	7
Reference Genome Assembly of the Big Berry Manzanita (Arctostaphylos glauca)	7
Conservation Genomics of the Threatened Western Spadefoot,Spea hammondii, in Urbanized Southern California	7
A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale	7
Opinion: Genetic Conflict With Mobile Elements Drives Eukaryotic Genome Evolution, and Perhaps Also Eukaryogenesis	7
Rapid Evolution of Seed Dormancy During Sunflower De-Domestication	7
Phylogeography of Cedros and Tiburón Island Mule Deer in North America’s Desert Southwest	7
On the Form and Origins of the Bizarre Sex Chromosomal System of the Mandarin Vole	7
The Genetic Architecture of Plant Defense Trade-offs in a Common Monkeyflower	7
Prion Protein Gene (PRNP) Sequences Suggest Differing Vulnerability to Chronic Wasting Disease for Florida Key Deer (Odocoileus virginianus clavium) and Columbian White-Tailed Deer (O	7
Male Linked Genomic Region Determines Sex in DioeciousAmaranthus palmeri	7
Analysis of Genetic Diversity in the American Standardbred Horse Utilizing Short Tandem Repeats and Single Nucleotide Polymorphisms	6
Reference Genome of the Northwestern Pond Turtle,Actinemys marmorata	6
Social Selection and the Evolution of Maladaptation	6
Polygenic Basis and the Role of Genome Duplication in Adaptation to Similar Selective Environments	6
Introgression ofASIPandTYRP1Alleles Explains Coat Color Variation in Valais Goats	6
On the Ecology and Distribution of Steelhead (Oncorhynchus mykiss) in California’s Eel River	6
Range-Wide Population Structure of 3 Deepwater Eteline Snappers Across the Indo-Pacific Basin	6
Population Genomics of New Zealand Pouched Lamprey (kanakana; piharau;Geotria australis)	6
Heritability Estimates of Antler and Body Traits in White-Tailed Deer (Odocoileus virginianus) From Genomic-Relatedness Matrices	6

Pleistocene Ice Ages Created New Evolutionary Lineages, but Limited Speciation in Northeast Pacific Winged Kelp	6
Extremely Low mtDNA Diversity and High Genetic Differentiation Reveal the Precarious Genetic Status of Dugongs in New Caledonia, South Pacific	6
An Annotated Draft Genome for the Andean Bear,Tremarctos ornatus	6
Correlated Population Genetic Structure in a Three-Tiered Host-Parasite System: The Potential for Coevolution and Adaptive Divergence	5
Mouse Hair Significantly Lightened Through Replacement of the Cysteine Residue in the N-Terminal Domain of Mc1r Using the CRISPR/Cas9 System	5
Genetic Diversity and Connectivity in Plant Species Differing in Clonality and Dispersal Mechanisms in Wetland Island Habitats	5
X-Linked Signature of Reproductive Isolation in Humans is Mirrored in a Howler Monkey Hybrid Zone	5
Population Genomic Analyses Confirm Male-Biased Mutation Rates in Snakes	5
Reference genome for the California ribbed mussel,Mytilus californianus, an ecosystem engineer	5
A Synthesis of Game Theory and Quantitative Genetic Models of Social Evolution	5
Reference genome of the rubber boa,Charina bottae(Serpentes: Boidae)	5
Heterozygosity-Fitness Correlations in a Continental Island Population of Thorn-Tailed Rayadito	5
Temporal Analysis of Effective Population Size and Mating System in a Social Wasp	5
Weighted Single-Step GWAS for Body Mass Index and Scans for Recent Signatures of Selection in Yorkshire Pigs	5
Ghosts of a Structured Past: Impacts of Ancestral Patterns of Isolation-by-Distance on Divergence-Time Estimation	5
High-Quality SNP Linkage Maps Improved QTL Mapping and Genome Assembly inPopulus	5
The Indirect Genetic Effect Interaction Coefficientψ: Theoretically Essential and Empirically Neglected	5
Impacts of Fire on Butterfly Genetic Diversity and Connectivity	5
DNA Content Variation and SNP Diversity Within a Single Population of Asexual Snails	5
SNP Markers as a Successful Molecular Tool for Assessing Species Identity and Geographic Origin of Trees in the Economically Important South American Legume GenusDipteryx	4
A Reference Genome Assembly of the Bobcat, Lynx rufus	4
Assembly of a Hybrid Formica aquilonia × F. polyctena Ant Genome From a Haploid Male	4
Reference genome of the California glossy snake, Arizona elegans occidentalis: A declining California Species of Special Concern	4
Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes)	4
Draftde novoGenome Assembly of the Elusive Jaguarundi,Puma yagouaroundi	4
Optimal Contribution Selection in Highly Fecund Species With Overlapping Generations	4
Genomic Determination of Reproductive Mode in Facultatively Parthenogenetic Opiliones	4
A highly contiguous genome assembly for the California quail (Callipepla californica)	4
“Type D” killer whale genomes reveal long-term small population size and low genetic diversity	4
Sperm Storage in a Family-Living Lizard, the Tree Skink (Egernia striolata)	4
Social Effects on Annual Fitness in Red Squirrels	4
Reference genome for the American rubyspot damselfly, Hetaerina americana	4
A lizard is never late: Squamate genomics as a recent catalyst for understanding sex chromosome and microchromosome evolution	4
Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch)	4
Transcriptomic Analysis Reveals Potential Candidate Pathways and Genes Involved in Toxin Biosynthesis in True Toads	3
Natural history collections as a resource for conservation genomics: Understanding the past to preserve the future	3
Evol2Circos: A Web-Based Tool for Genome Synteny and Collinearity Analysis and its Visualization in Fishes	3
Gene expression reveals immune response strategies of naïve Hawaiian honeycreepers experimentally infected with introduced avian malaria	3
Assessing Population Structure and Genetic Diversity in US Suffolk Sheep to Define a Framework for Genomic Selection	3
The March of the Beetles: Epistatic Components Dominate Divergence in Dispersal Tendency in Tribolium castaneum	3
Phenotypic Assortment Changes the Landscape of Selection	3
The Contribution of Clonality to Population Genetic Structure in the Sea Anemone, Diadumene lineata	3
Detection of Common Copy Number of Variants Underlying Selection Pressure in Middle Eastern Horse Breeds Using Whole-Genome Sequence Data	3
Interspecific Hybridization and Island Colonization History, not Rarity, Most Strongly Affect the Genetic Diversity inDiospyrosa Clade of Mascarene-Endemic Trees	3
Variable Signatures of Selection Despite Conserved Recombination Landscapes Early in Speciation	3
Ancient Introgression Between Distantly Related White Oaks (Quercussect.Quercus) Shows Evidence of Climate-Associated Asymmetric Gene Exchange	3
Mitochondrial DNA Profiling Reveals Two Lineages of Sun Bears in East and West Malaysia	3
Evolutionary potential mitigates extinction risk under climate change in the endangered southwestern willow flycatcher	3
Identifying Genomic Regions Targeted During Eggplant Domestication Using Transcriptome Data	3
Variation in Genetic Mechanisms for Plumage Polymorphism in Skuas (Stercorarius)	3
A tale of two paths: The evolution of mitochondrial recombination in bivalves with doubly uniparental inheritance	3
Approximating the Coalescent Under Facultative Sex	3
Heat challenge elicits stronger physiological and gene expression responses than starvation in symbiotic Oculina arbuscula	3
The Origin of Isolated Populations of the Mountain Weevil,Liparus glabrirostris—The Flagship Species for Riparian Habitats	3
Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae)	3
The Collective Behavior of Ant Groups Depends on Group Genotypic Composition	3
Genetic Consequences of Biologically Altered Environments	3
Genomics of Population Differentiation in Humpback Dolphins,Sousaspp. in the Indo-Pacific Ocean	3
Genomic analyses of gray fox lineages suggest ancient divergence and secondary contact in the southern Great Plains	3
A De Novo Chromosome-Level Genome Assembly of the White-Tailed Deer, Odocoileus Virginianus	3
Little Sharks in a Big World: Mitochondrial DNA Reveals Small-scale Population Structure in the California Horn Shark (Heterodontus francisci)	3
A draft reference genome of the red abalone, Haliotis rufescens, for conservation genomics	3
A chromosome-level reference genome for the giant pink sea star,Pisaster brevispinus, a species severely impacted by wasting	3
Numt Parser: Automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera	3
MLNe: Simulating and estimating effective size and migration rate from temporal changes in allele frequencies	3
Extensive genome introgression between domestic ferret and European polecat during population recovery in Great Britain	2
De novo assembly of a chromosome-level reference genome for the California Scrub-Jay, Aphelocoma californica	2
Predictors of genomic diversity within North American squamates	2
Corrigendum to: Facultative Parthenogenesis in California Condors	2
Reference genome of an iconic lizard in western North America, Blainville’s horned lizard Phrynosoma blainvillii	2
A highly contiguous reference genome for the Steller’s jay (Cyanocitta stelleri)	2
When is Offspring Viability Fitness a Measure of Paternal Fitness and When is it not?	2
AgeStrucNb: Software for Simulating and Detecting Changes in the Effective Number of Breeders (Nb)	2
Genetic Melting Pot in Blacklegged Ticks at the Northern Edge of their Expansion Front	2
A high-quality reference genome for the critically endangered Aeolian wall lizard, Podarcis raffonei	2
Reference genome of the Monkeyface Prickleback,Cebidichthys violaceus	2
GWAS Identifies a Region Containing theSALL1Gene in Variation of Pigmentation Intensity Within the Chestnut Coat Color of Horses	2
Juvenile idiopathic epilepsy in Arabian horses is not a single-gene disorder	2
The draft genome of the Tibetan partridge (Perdix hodgsoniae) provides insights into its phylogenetic position and high-altitude adaptation	2
A chromosome-scale reference genome assembly of the great sand eel,Hyperoplus lanceolatus	2

Low Bottleneck Detection in Long-Lived Species Despite Lost Genetic Diversity: A Case Study of Tuatara and Eastern Massasauga Rattlesnakes	2
Gut bacterial composition shows sex-specific shifts during breeding season in ex situ managed black-footed ferrets	2
Maternal-Offspring Interactions: Reciprocally Coevolving Social Environments	2
Genetic architectures of postmating isolation and morphology of two highly diverged rockfishes (genusSebastes)	2
MHC Reflects Fine-Scale Habitat Structure in White-Tailed Eagles,Haliaeetus albicilla	2
Estimating phylogenies from genomes: A beginners review of commonly used genomic data in vertebrate phylogenomics	2
The Evolution of Sex is Tempered by Costly Hybridization in Boechera (Rock Cress)	2
Molecular ecology of the sleeper shark subgenusSomniosus (Somniosus)reveals genetic homogeneity within species and lack of support forS. antarcticus	2
Seascape Genetics of the Atlantic Spotted Dolphin (Stenella frontalis) Based on Mitochondrial DNA	2
Dominance Can Increase Genetic Variance After a Population Bottleneck: A Synthesis of the Theoretical and Empirical Evidence	2
K Locus Effects in Gray Wolves: Experimental Assessment of TLR3 Signaling and the Gene Expression Response to Canine Distemper Virus	2
Reference Genome of the Black Surfperch,Embiotoca jacksoni(Embiotocidae, Perciformes), a California Kelp Forest Fish That Lacks a Pelagic Larval Stage	2
Erratum to: A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus	2