Journal of Heredity

Article	Citations
A Fast and Efficient Single-stranded Genomic Library Preparation Method Optimized for Ancient DNA	82
Landscape Genomics to Enable Conservation Actions: The California Conservation Genomics Project	62
What IsNe, Anyway?	54
Avian Coloration Genetics: Recent Advances and Emerging Questions	46
Sex Ratios in a Warming World: Thermal Effects on Sex-Biased Survival, Sex Determination, and Sex Reversal	33
Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (Felis catus) and Asian Leopard Cat (Prionailurus bengalensis)	32
Implications of Large-Effect Loci for Conservation: A Review and Case Study with Pacific Salmon	31
A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus	31
Nile Tilapia: A Model for Studying Teleost Color Patterns	31
Extensive Linkage and Genetic Coupling of Song and Preference Loci Underlying Rapid Speciation inLaupalaCrickets	25
CRISPR Knockouts of pmela and pmelb Engineered a Golden Tilapia by Regulating Relative Pigment Cell Abundance	22
Chromosome-Level Genome Assembly Reveals Dynamic Sex Chromosomes in Neotropical Leaf-Litter Geckos (Sphaerodactylidae:Sphaerodactylus)	20
Genetic rescue remains underused for aiding recovery of federally listed vertebrates in the United States	19
A Reference Genome Assembly of American Bison,Bison bison bison	18
Genome Assembly of SalicaceaePopulus deltoides(Eastern Cottonwood)I-69Based on Nanopore Sequencing and Hi-C Technologies	18
Facultative Parthenogenesis in California Condors	17
Limited Evidence for Parallel Evolution Among Desert-AdaptedPeromyscusDeer Mice	17
Indirect Genetic Effects: A Cross-disciplinary Perspective on Empirical Studies	16
Seizing the moment: The opportunity and relevance of the California Conservation Genomics Project to state and federal conservation policy	16
The Combined Effect of Haplodiplonty and Partial Clonality on Genotypic and Genetic Diversity in a Finite Mutating Population	16
A Chromosome-Level Genome Assembly of the Parasitoid Wasp,Cotesia glomerata(Hymenoptera: Braconidae)	15
Feather Gene Expression Elucidates the Developmental Basis of Plumage Iridescence in African Starlings	15
Powerful Identification of Large Quantitative Trait Loci Using Genome-Wide R/glmnet-Based Regression	15
Sex and Asex: A Clonal Lexicon	15
Low Persistence of Genetic Rescue Across Generations in the Arctic Fox (Vulpes lagopus)	14

Sequence Analysis and Ontogenetic Expression Patterns of Cone Opsin Genes in the Bluefin Killifish (Lucania goodei)	14
The revised reference genome of the leopard gecko (Eublepharis macularius) provides insight into the considerations of genome phasing and assembly	13
Where to draw the line? Expanding the delineation of conservation units to highly mobile taxa	13
Natural history collections as a resource for conservation genomics: Understanding the past to preserve the future	13
Big Data in Conservation Genomics: Boosting Skills, Hedging Bets, and Staying Current in the Field	12
Chromosome-Level Reference Genome Assembly for the American Pika (Ochotona princeps)	12
A Genome forBidens hawaiensis: A Member of a Hexaploid Hawaiian Plant Adaptive Radiation	12
Exploring the Genetic Consequences of Clonality in Haplodiplontic Taxa	12
Host, Microbiome, and Complex Space: Applying Population and Landscape Genetic Approaches to Gut Microbiome Research in Wild Populations	12
Relative Precision of the Sibship and LD Methods for Estimating Effective Population Size With Genomics-Scale Datasets	11
Two Variants of KIT Causing White Patterning in Stock-Type Horses	11
Genomic Assessment of Global Population Structure in a Highly Migratory and Habitat Versatile Apex Predator, the Tiger Shark (Galeocerdo cuvier)	11
Pervasive Genomic Signatures of Local Adaptation to Altitude Across Highland Specialist Andean Hummingbird Populations	11
Polygenic Basis and the Role of Genome Duplication in Adaptation to Similar Selective Environments	11
Mitochondria as environments for the nuclear genome in Drosophila: mitonuclear G×G×E	10
Avian Introgression Patterns are Consistent With Haldane’s Rule	10
The phylogeny of California, and how it informs setting multispecies conservation priorities	10
Are Genomic Updates of Well-Studied Species Worth the Investment for Conservation? A Case Study of the Critically Endangered Magdalena River Turtle	10
A lizard is never late: Squamate genomics as a recent catalyst for understanding sex chromosome and microchromosome evolution	9
Frequent Paternal Mitochondrial Inheritance and Rapid Haplotype Frequency Shifts in Copepod Hybrids	8
Multi-Copy Gene Family Evolution on the Avian W Chromosome	8
Rapid Evolution of Seed Dormancy During Sunflower De-Domestication	8
On the Form and Origins of the Bizarre Sex Chromosomal System of the Mandarin Vole	8
Extremely Low mtDNA Diversity and High Genetic Differentiation Reveal the Precarious Genetic Status of Dugongs in New Caledonia, South Pacific	8
Reference Genome Assembly of the Big Berry Manzanita (Arctostaphylos glauca)	8
A Unique Mitochondrial Gene Block Inversion in Antarctic Trematomin Fishes: A Cautionary Tale	8
Opinion: Genetic Conflict With Mobile Elements Drives Eukaryotic Genome Evolution, and Perhaps Also Eukaryogenesis	7
Population Genomics of New Zealand Pouched Lamprey (kanakana; piharau;Geotria australis)	7
Phylogeography of Cedros and Tiburón Island Mule Deer in North America’s Desert Southwest	7
Reference Genome of the Northwestern Pond Turtle,Actinemys marmorata	7
Social Selection and the Evolution of Maladaptation	7
Temporal Analysis of Effective Population Size and Mating System in a Social Wasp	7
Reference genome for the California ribbed mussel,Mytilus californianus, an ecosystem engineer	7
The Indirect Genetic Effect Interaction Coefficientψ: Theoretically Essential and Empirically Neglected	7
An Annotated Draft Genome for the Andean Bear,Tremarctos ornatus	7
Analysis of Genetic Diversity in the American Standardbred Horse Utilizing Short Tandem Repeats and Single Nucleotide Polymorphisms	7
Numt Parser: Automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera	7
Assessing Population Structure and Genetic Diversity in US Suffolk Sheep to Define a Framework for Genomic Selection	6
A Synthesis of Game Theory and Quantitative Genetic Models of Social Evolution	6
Little Sharks in a Big World: Mitochondrial DNA Reveals Small-scale Population Structure in the California Horn Shark (Heterodontus francisci)	6
Weighted Single-Step GWAS for Body Mass Index and Scans for Recent Signatures of Selection in Yorkshire Pigs	6
Introgression ofASIPandTYRP1Alleles Explains Coat Color Variation in Valais Goats	6
Extensive genome introgression between domestic ferret and European polecat during population recovery in Great Britain	6
A tale of two paths: The evolution of mitochondrial recombination in bivalves with doubly uniparental inheritance	5
Population Genomic Analyses Confirm Male-Biased Mutation Rates in Snakes	5
A Reference Genome Assembly of the Bobcat, Lynx rufus	5
Reference genome for the American rubyspot damselfly, Hetaerina americana	5
Reference genome of the rubber boa,Charina bottae(Serpentes: Boidae)	5
Evolutionary potential mitigates extinction risk under climate change in the endangered southwestern willow flycatcher	5
Impacts of Fire on Butterfly Genetic Diversity and Connectivity	5

A draft reference genome of the red abalone, Haliotis rufescens, for conservation genomics	5
Assembly of a Hybrid Formica aquilonia × F. polyctena Ant Genome From a Haploid Male	5
Estimating phylogenies from genomes: A beginners review of commonly used genomic data in vertebrate phylogenomics	5
Correlated Population Genetic Structure in a Three-Tiered Host-Parasite System: The Potential for Coevolution and Adaptive Divergence	5
Social Effects on Annual Fitness in Red Squirrels	5
Approximating the Coalescent Under Facultative Sex	5
DNA Content Variation and SNP Diversity Within a Single Population of Asexual Snails	5
A highly contiguous genome assembly for the California quail (Callipepla californica)	5
Genetic Diversity and Connectivity in Plant Species Differing in Clonality and Dispersal Mechanisms in Wetland Island Habitats	5
Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (Mustela nigripes)	5
A computational approach for positive genetic identification and relatedness detection from low-coverage shotgun sequencing data	4
Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch)	4
Assessing genomic and ecological differentiation among subspecies of the rough-footed mud turtle,Kinosternon hirtipes	4
De novo assembly of a chromosome-level reference genome for the California Scrub-Jay, Aphelocoma californica	4
Ancient Introgression Between Distantly Related White Oaks (Quercussect.Quercus) Shows Evidence of Climate-Associated Asymmetric Gene Exchange	4
Molecular ecology of the sleeper shark subgenusSomniosus (Somniosus)reveals genetic homogeneity within species and lack of support forS. antarcticus	4
Sperm Storage in a Family-Living Lizard, the Tree Skink (Egernia striolata)	4
Draftde novoGenome Assembly of the Elusive Jaguarundi,Puma yagouaroundi	4
Genomic Determination of Reproductive Mode in Facultatively Parthenogenetic Opiliones	4
A high-quality reference genome for the critically endangered Aeolian wall lizard, Podarcis raffonei	4
The Evolution of Sex is Tempered by Costly Hybridization in Boechera (Rock Cress)	4
Population structure and genetic variation of fragmented mountain birch forests in Iceland	4
The Collective Behavior of Ant Groups Depends on Group Genotypic Composition	4
Gene expression reveals immune response strategies of naïve Hawaiian honeycreepers experimentally infected with introduced avian malaria	4
A De Novo Chromosome-Level Genome Assembly of the White-Tailed Deer, Odocoileus Virginianus	4
Low Bottleneck Detection in Long-Lived Species Despite Lost Genetic Diversity: A Case Study of Tuatara and Eastern Massasauga Rattlesnakes	4
Give and take: Effects of genetic admixture on mutation load in endangered Florida panthers	4
A chromosome-level genome assembly for the dugong (Dugong dugon)	4
Heat challenge elicits stronger physiological and gene expression responses than starvation in symbiotic Oculina arbuscula	4
Transcriptomic Analysis Reveals Potential Candidate Pathways and Genes Involved in Toxin Biosynthesis in True Toads	4
Reference genome of the California glossy snake, Arizona elegans occidentalis: A declining California Species of Special Concern	4
“Type D” killer whale genomes reveal long-term small population size and low genetic diversity	4
Identifying Genomic Regions Targeted During Eggplant Domestication Using Transcriptome Data	4
Variation in Genetic Mechanisms for Plumage Polymorphism in Skuas (Stercorarius)	4
Phenotypic Assortment Changes the Landscape of Selection	4
A chromosome-scale reference genome assembly of the great sand eel,Hyperoplus lanceolatus	3
The Contribution of Clonality to Population Genetic Structure in the Sea Anemone,Diadumene lineata	3
Maternal-Offspring Interactions: Reciprocally Coevolving Social Environments	3
Detection of Common Copy Number of Variants Underlying Selection Pressure in Middle Eastern Horse Breeds Using Whole-Genome Sequence Data	3
The value of hybrid genomes: Building two highly contiguous reference genome assemblies to advance Canis genomic studies	3
Landscape Connectivity and Genetic Structure in a Mainstem and a Tributary Stonefly (Plecoptera) Species Using a Novel Reference Genome	3
Mitochondrial DNA Profiling Reveals Two Lineages of Sun Bears in East and West Malaysia	3
Guidelines and quantitative standards for improved cetacean taxonomy using full mitochondrial genomes	3
When is Offspring Viability Fitness a Measure of Paternal Fitness and When is it not?	3
Genetic Background of the Polish Primitive Horse (Konik) Coat Color Variation—New Insight into Dun Dilution Phenotypic Effect	3
Chromosome-level reference genome of stinkwort, Dittrichia graveolens (L.) Greuter: A resource for studies on invasion, range expansion, and evolutionary adaptation under global change	3
MLNe: Simulating and estimating effective size and migration rate from temporal changes in allele frequencies	3
Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae)	3
No evidence of inbreeding depression despite a historical severe bottleneck in the endangered Bermuda petrel (Pterodroma cahow)	3
Genetic Consequences of Biologically Altered Environments	3
Genomic analyses of gray fox lineages suggest ancient divergence and secondary contact in the southern Great Plains	3
A highly contiguous reference genome for the Steller’s jay (Cyanocitta stelleri)	3
A chromosome-level reference genome for the giant pink sea star,Pisaster brevispinus, a species severely impacted by wasting	3
Interspecific Hybridization and Island Colonization History, not Rarity, Most Strongly Affect the Genetic Diversity inDiospyrosa Clade of Mascarene-Endemic Trees	3
Species differences in hormonally mediated gene expression underlie the evolutionary loss of sexually dimorphic coloration inSceloporuslizards	3
Variable Signatures of Selection Despite Conserved Recombination Landscapes Early in Speciation	3
GWAS Identifies a Region Containing theSALL1Gene in Variation of Pigmentation Intensity Within the Chestnut Coat Color of Horses	3
Corrigendum to: Facultative Parthenogenesis in California Condors	2
Seascape genomics of the pink abalone (Haliotis corrugata): An insight into a cross-border species in the northeast Pacific coast	2
Reference genome of an iconic lizard in western North America, Blainville’s horned lizard Phrynosoma blainvillii	2
Phylogeography of the freshwater crab Potamon persicum (Decapoda: Potamidae): an ancestral ring species?	2
Seascape Genetics of the Atlantic Spotted Dolphin (Stenella frontalis) Based on Mitochondrial DNA	2
Mitogenomic analysis of a late Pleistocene jaguar from North America	2
Diversity of mitochondrial DNA in 3 species of great whales before and after modern whaling	2
Drift drives the evolution of chromosome number I: The impact of trait transitions on genome evolution in Coleoptera	2
Inheritance and QTL Mapping for Flower Color inSalvia miltiorrhizaBunge	2
Predictors of genomic diversity within North American squamates	2
Reference genome of the color polymorphic desert annual plant sandblossoms, Linanthus parryae	2
The genome of the invasive and broadly polyphagous Diaprepes root weevil, Diaprepes abbreviatus (Coleoptera), reveals an arsenal of putative polysaccharide-degrading enzymes	2
Sequence Diversity and Differences at the Highly Duplicated MHC-I Gene Reflect Viral Susceptibility in Sympatric Pinniped Species	2
Dominance Can Increase Genetic Variance After a Population Bottleneck: A Synthesis of the Theoretical and Empirical Evidence	2
Genetic architectures of postmating isolation and morphology of two highly diverged rockfishes (genusSebastes)	2
Erratum to: A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus	2
Reference genome of the Monkeyface Prickleback,Cebidichthys violaceus	2
Demographic inference provides insights into the extirpation and ecological dominance of eusocial snapping shrimps	2
The draft genome of the Tibetan partridge (Perdix hodgsoniae) provides insights into its phylogenetic position and high-altitude adaptation	2
The Genetic Population Structure of Lake Tanganyika’sLatesSpecies Flock, an Endemic Radiation of Pelagic Top Predators	2
Gut bacterial composition shows sex-specific shifts during breeding season in ex situ managed black-footed ferrets	2
K Locus Effects in Gray Wolves: Experimental Assessment of TLR3 Signaling and the Gene Expression Response to Canine Distemper Virus	2
Reference Genome of the Black Surfperch,Embiotoca jacksoni(Embiotocidae, Perciformes), a California Kelp Forest Fish That Lacks a Pelagic Larval Stage	2

MHC Reflects Fine-Scale Habitat Structure in White-Tailed Eagles,Haliaeetus albicilla	2
Assessing Genomic Diversity, Connectivity, and Riverscape Genetics Hypotheses in the Endangered Rough Hornsnail,Pleurocera Foremani, Following Habitat Disruption	2
Large variance in inbreeding within the Iberian wolf population	2
Juvenile idiopathic epilepsy in Arabian horses is not a single-gene disorder	2