Journal of Cell Biology

Papers
(The TQCC of Journal of Cell Biology is 17. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-04-01 to 2024-04-01.)
ArticleCitations
LNCcation: lncRNA localization and function608
SuperPlots: Communicating reproducibility and variability in cell biology404
Mitochondrial regulation of ferroptosis190
Autophagosome biogenesis: From membrane growth to closure182
Lysosome biogenesis: Regulation and functions154
The cell biology of synapse formation138
Mitophagy pathways in health and disease119
Critical role of mitochondrial ubiquitination and the OPTN–ATG9A axis in mitophagy110
SARM1 acts downstream of neuroinflammatory and necroptotic signaling to induce axon degeneration100
Paradoxical roles of caspase-3 in regulating cell survival, proliferation, and tumorigenesis100
Liquid–liquid phase separation in autophagy98
TMEM41B and VMP1 are scramblases and regulate the distribution of cholesterol and phosphatidylserine91
STING induces LC3B lipidation onto single-membrane vesicles via the V-ATPase and ATG16L1-WD40 domain88
VPS13D bridges the ER to mitochondria and peroxisomes via Miro86
The RNA binding protein FMR1 controls selective exosomal miRNA cargo loading during inflammation85
FUS-dependent liquid–liquid phase separation is important for DNA repair initiation84
Lipid droplets in the nervous system82
Mechanisms of nonvesicular lipid transport82
Cancer cells educate natural killer cells to a metastasis-promoting cell state82
The NLRP3–inflammasome as a sensor of organelle dysfunction81
The cell biology of Parkinson’s disease77
Recognition of RNA by the S9.6 antibody creates pervasive artifacts when imaging RNA:DNA hybrids70
Mitochondria as intracellular signaling platforms in health and disease70
CDK4/6 regulate lysosome biogenesis through TFEB/TFE369
Seipin and Nem1 establish discrete ER subdomains to initiate yeast lipid droplet biogenesis68
Microtubules control cellular shape and coherence in amoeboid migrating cells67
Sequential dynein effectors regulate axonal autophagosome motility in a maturation-dependent pathway67
Who’s in control? Principles of Rab GTPase activation in endolysosomal membrane trafficking and beyond67
3D FIB-SEM reconstruction of microtubule–organelle interaction in whole primary mouse β cells62
PD-1 and BTLA regulate T cell signaling differentially and only partially through SHP1 and SHP261
Phospholipid ebb and flow makes mitochondria go61
COPII collar defines the boundary between ER and ER exit site and does not coat cargo containers60
The proline-rich domain promotes Tau liquid–liquid phase separation in cells59
Pathogenic mutations in the kinesin-3 motor KIF1A diminish force generation and movement through allosteric mechanisms59
Endosomal escape of delivered mRNA from endosomal recycling tubules visualized at the nanoscale58
Phase separation of Axin organizes the β-catenin destruction complex58
Ribosome heterogeneity in stem cells and development57
Similarities and interplay between senescent cells and macrophages57
ULK complex organization in autophagy by a C-shaped FIP200 N-terminal domain dimer57
A PI3K-WIPI2 positive feedback loop allosterically activates LC3 lipidation in autophagy56
Evolving models for assembling and shaping clathrin-coated pits56
High-fidelity reconstitution of stress granules and nucleoli in mammalian cellular lysate55
ECM deposition is driven by caveolin-1–dependent regulation of exosomal biogenesis and cargo sorting53
V-ATPase is a universal regulator of LC3-associated phagocytosis and non-canonical autophagy52
Ubiquitin chains earmark GPCRs for BBSome-mediated removal from cilia52
High-content imaging-based pooled CRISPR screens in mammalian cells51
The long journey to bring a Myc inhibitor to the clinic50
Secretory autophagy maintains proteostasis upon lysosome inhibition50
Topological features of integrin adhesion complexes revealed by multiplexed proximity biotinylation50
Ubiquitin links smoothened to intraflagellar transport to regulate Hedgehog signaling50
Time-resolved proteomics profiling of the ciliary Hedgehog response49
VPS13D promotes peroxisome biogenesis48
Nuclear lipid droplets form in the inner nuclear membrane in a seipin-independent manner48
Role of the early secretory pathway in SARS-CoV-2 infection48
Regulated lipid synthesis and LEM2/CHMP7 jointly control nuclear envelope closure46
Image-based pooled whole-genome CRISPRi screening for subcellular phenotypes46
TORC1 inactivation stimulates autophagy of nucleoporin and nuclear pore complexes46
PINK1 drives production of mtDNA-containing extracellular vesicles to promote invasiveness46
Torsin ATPase deficiency leads to defects in nuclear pore biogenesis and sequestration of MLF246
Stress sensor Ire1 deploys a divergent transcriptional program in response to lipid bilayer stress45
Transmembrane phospholipid translocation mediated by Atg9 is involved in autophagosome formation44
Adherens junction regulates cryptic lamellipodia formation for epithelial cell migration43
Polo-like kinase 1 independently controls microtubule-nucleating capacity and size of the centrosome43
Cytoskeletal organization of axons in vertebrates and invertebrates42
Protrudin-mediated ER–endosome contact sites promote MT1-MMP exocytosis and cell invasion42
CRISPR-Cas12a–assisted PCR tagging of mammalian genes41
Sarm1 activation produces cADPR to increase intra-axonal Ca++ and promote axon degeneration in PIPN41
Mitochondrial fragmentation enables localized signaling required for cell repair40
Chlamydomonas PKD2 organizes mastigonemes, hair-like glycoprotein polymers on cilia40
Interferon-stimulated gene 15 accelerates replication fork progression inducing chromosomal breakage40
mTORC1 activity is supported by spatial association with focal adhesions39
Catalytically inactive, purified RNase H1: A specific and sensitive probe for RNA–DNA hybrid imaging39
Coupling of translation quality control and mRNA targeting to stress granules39
CDC42EP5/BORG3 modulates SEPT9 to promote actomyosin function, migration, and invasion38
Phagosome resolution regenerates lysosomes and maintains the degradative capacity in phagocytes38
Synaptic activity controls autophagic vacuole motility and function in dendrites38
Binding and transport of SFPQ-RNA granules by KIF5A/KLC1 motors promotes axon survival38
Computational analyses reveal spatial relationships between nuclear pore complexes and specific lamins37
Caveolin-1 and cavin1 act synergistically to generate a unique lipid environment in caveolae37
Direct binding of ESCRT protein Chm7 to phosphatidic acid–rich membranes at nuclear envelope herniations37
FIT2 is an acyl–coenzyme A diphosphatase crucial for endoplasmic reticulum homeostasis37
DOT1L modulates the senescence-associated secretory phenotype through epigenetic regulation of IL1A36
Rapid degradation of GRASP55 and GRASP65 reveals their immediate impact on the Golgi structure36
Structural and biochemical insights into lipid transport by VPS13 proteins36
Mechanosensitive calcium flashes promote sustained RhoA activation during tight junction remodeling36
Analysis of copy number alterations reveals the lncRNA ALAL-1 as a regulator of lung cancer immune evasion35
Regulation of Golgi turnover by CALCOCO1-mediated selective autophagy35
SAMM50 acts with p62 in piecemeal basal- and OXPHOS-induced mitophagy of SAM and MICOS components35
High-speed single-molecule imaging reveals signal transduction by induced transbilayer raft phases35
Cyclin B1-Cdk1 facilitates MAD1 release from the nuclear pore to ensure a robust spindle checkpoint34
ER-lysosome lipid transfer protein VPS13C/PARK23 prevents aberrant mtDNA-dependent STING signaling34
The WAVE complex associates with sites of saddle membrane curvature34
MICAL2 enhances branched actin network disassembly by oxidizing Arp3B-containing Arp2/3 complexes33
Quantitative correlative microscopy reveals the ultrastructural distribution of endogenous endosomal proteins33
The modified mitochondrial outer membrane carrier MTCH2 links mitochondrial fusion to lipogenesis33
Tyramide signal amplification mass spectrometry (TSA-MS) ratio identifies nuclear speckle proteins33
Telomerase treatment prevents lung profibrotic pathologies associated with physiological aging33
PI4P/PS countertransport by ORP10 at ER–endosome membrane contact sites regulates endosome fission33
HDAC6 regulates microtubule stability and clustering of AChRs at neuromuscular junctions33
A cryo-ET survey of microtubules and intracellular compartments in mammalian axons32
XMAP215 promotes microtubule catastrophe by disrupting the growing microtubule end32
FHL2 anchors mitochondria to actin and adapts mitochondrial dynamics to glucose supply32
Nesprins are mechanotransducers that discriminate epithelial–mesenchymal transition programs32
Mitochondrial translation and dynamics synergistically extend lifespan in C. elegans through HLH-3032
Ubiquitin ligase MARCH5 localizes to peroxisomes to regulate pexophagy32
A non-canonical Hedgehog pathway initiates ciliogenesis and autophagy32
Sterol biosensor reveals LAM-family Ltc1-dependent sterol flow to endosomes upon Arp2/3 inhibition31
Alternative splicing of clathrin heavy chain contributes to the switch from coated pits to plaques31
Long-lived mitochondrial cristae proteins in mouse heart and brain31
PLCγ1 promotes phase separation of T cell signaling components31
The cell biology of inflammation: From common traits to remarkable immunological adaptations31
Lipid droplets and the host–pathogen dynamic: FATal attraction?31
Intracellular wetting mediates contacts between liquid compartments and membrane-bound organelles31
Prolonged mitosis results in structurally aberrant and over-elongated centrioles30
The Rab7 effector WDR91 promotes autophagy-lysosome degradation in neurons by regulating lysosome fusion30
Phosphorylation of SNX27 by MAPK11/14 links cellular stress–signaling pathways with endocytic recycling30
Capture and delivery of tail-anchored proteins to the endoplasmic reticulum30
ER as master regulator of membrane trafficking and organelle function30
High-precision targeting workflow for volume electron microscopy30
In situ cryo-electron tomography reveals filamentous actin within the microtubule lumen30
ER–mitochondria contacts promote mitochondrial-derived compartment biogenesis30
Label-retention expansion microscopy29
USP19 promotes hypoxia-induced mitochondrial division via FUNDC1 at ER-mitochondria contact sites29
Factors promoting nuclear envelope assembly independent of the canonical ESCRT pathway29
Parkin-independent mitophagy via Drp1-mediated outer membrane severing and inner membrane ubiquitination29
FMNL2 regulates dynamics of fascin in filopodia29
GTP-dependent formation of straight tubulin oligomers leads to microtubule nucleation29
CRISPR screens for lipid regulators reveal a role for ER-bound SNX13 in lysosomal cholesterol export29
Mitochondrial DNA segregation and replication restrict the transmission of detrimental mutation29
A guide to membrane atg8ylation and autophagy with reflections on immunity29
Fission yeast Pak1 phosphorylates anillin-like Mid1 for spatial control of cytokinesis29
Cargo crowding contributes to sorting stringency in COPII vesicles29
Cnm1 mediates nucleus–mitochondria contact site formation in response to phospholipid levels28
A polybasic domain in aPKC mediates Par6-dependent control of membrane targeting and kinase activity28
Vps13-like proteins provide phosphatidylethanolamine for GPI anchor synthesis in the ER28
ANO5 ensures trafficking of annexins in wounded myofibers28
Centriole-independent mitotic spindle assembly relies on the PCNT–CDK5RAP2 pericentriolar matrix28
Kinetochore phosphatases suppress autonomous Polo-like kinase 1 activity to control the mitotic checkpoint28
Optogenetic activators of apoptosis, necroptosis, and pyroptosis28
GOLPH3 and GOLPH3L are broad-spectrum COPI adaptors for sorting into intra-Golgi transport vesicles28
Branched actin networks are assembled on microtubules by adenomatous polyposis coli for targeted membrane protrusion28
WASP integrates substrate topology and cell polarity to guide neutrophil migration27
Angulin-1 seals tricellular contacts independently of tricellulin and claudins27
mRNA localization mediates maturation of cytoplasmic cilia in Drosophila spermatogenesis27
Vps13D functions in a Pink1-dependent and Parkin-independent mitophagy pathway27
Evidence for anaphase pulling forces during C. elegans meiosis27
Induction of spontaneous human neocentromere formation and long-term maturation27
CENP-A overexpression promotes aneuploidy with karyotypic heterogeneity27
A modified lysosomal organelle mediates nonlytic egress of reovirus26
Atlastin 2/3 regulate ER targeting of the ULK1 complex to initiate autophagy26
Deorphanizing FAM19A proteins as pan-neurexin ligands with an unusual biosynthetic binding mechanism26
Kinetochore-bound Mps1 regulates kinetochore–microtubule attachments via Ndc80 phosphorylation26
NUCKS1 promotes RAD54 activity in homologous recombination DNA repair26
An antibody toolbox to track complex I assembly defines AIF’s mitochondrial function26
Plectin-mediated cytoskeletal crosstalk controls cell tension and cohesion in epithelial sheets26
A ciliopathy complex builds distal appendages to initiate ciliogenesis26
The UPRmt preserves mitochondrial import to extend lifespan26
RIM-binding protein couples synaptic vesicle recruitment to release sites25
A septin GTPase scaffold of dynein–dynactin motors triggers retrograde lysosome transport25
C-ferroptosis is an iron-dependent form of regulated cell death in cyanobacteria25
ORP5 and ORP8 orchestrate lipid droplet biogenesis and maintenance at ER–mitochondria contact sites25
MICOS subcomplexes assemble independently on the mitochondrial inner membrane in proximity to ER contact sites25
NCOA4 drives ferritin phase separation to facilitate macroferritinophagy and microferritinophagy25
Atg39 links and deforms the outer and inner nuclear membranes in selective autophagy of the nucleus25
Subcellular localization of the J-protein Sis1 regulates the heat shock response25
CDKD-dependent activation of CDKA;1 controls microtubule dynamics and cytokinesis during meiosis25
Conserved actin machinery drives microtubule-independent motility and phagocytosis in Naegleria25
Consensus nomenclature for dyneins and associated assembly factors25
NBR1: The archetypal selective autophagy receptor25
Dendritic cell actin dynamics control contact duration and priming efficiency at the immunological synapse25
Opposing functions for retromer and Rab11 in extracellular vesicle traffic at presynaptic terminals25
p53 deficiency triggers dysregulation of diverse cellular processes in physiological oxygen25
Structural insights into G domain dimerization and pathogenic mutation of OPA125
VMP1 and TMEM41B are essential for DMV formation during β-coronavirus infection24
Notch2 complements Notch1 to mediate inductive signaling that initiates early T cell development24
Cell division requires RNA eviction from condensing chromosomes24
LUZP1 and the tumor suppressor EPLIN modulate actin stability to restrict primary cilia formation24
The +TIP Navigator-1 is an actin–microtubule crosslinker that regulates axonal growth cone motility24
TDP-43 mediates SREBF2-regulated gene expression required for oligodendrocyte myelination24
Regulating peroxisome–ER contacts via the ACBD5-VAPB tether by FFAT motif phosphorylation and GSK3β24
A mitochondrial contribution to anti-inflammatory shear stress signaling in vascular endothelial cells24
Specific KIF1A–adaptor interactions control selective cargo recognition24
Nano-scale resolution of native retinal rod disk membranes reveals differences in lipid composition24
Effector-mediated ERM activation locally inhibits RhoA activity to shape the apical cell domain23
Twinfilin bypasses assembly conditions and actin filament aging to drive barbed end depolymerization23
Biochemical reconstitutions reveal principles of human γ-TuRC assembly and function23
Molecular basis of MKLP2-dependent Aurora B transport from chromatin to the anaphase central spindle23
Shared and specific functions of Arfs 1–5 at the Golgi revealed by systematic knockouts23
Dual spindles assemble in bovine zygotes despite the presence of paternal centrosomes23
Object detection networks and augmented reality for cellular detection in fluorescence microscopy23
Stable inheritance of CENP-A chromatin: Inner strength versus dynamic control23
The ER cholesterol sensor SCAP promotes CARTS biogenesis at ER–Golgi membrane contact sites23
ATG9 vesicles comprise the seed membrane of mammalian autophagosomes22
Cell migration orchestrates migrasome formation by shaping retraction fibers22
An asymmetric junctional mechanoresponse coordinates mitotic rounding with epithelial integrity22
Teasing out function from morphology: Similarities between primary cilia and immune synapses22
An APEX2 proximity ligation method for mapping interactions with the nuclear lamina22
ZNF416 is a pivotal transcriptional regulator of fibroblast mechanoactivation22
Stochastic combinations of actin regulatory proteins are sufficient to drive filopodia formation22
Collective invasion induced by an autocrine purinergic loop through connexin-43 hemichannels22
FIT2 organizes lipid droplet biogenesis with ER tubule-forming proteins and septins22
Live imaging of transcription sites using an elongating RNA polymerase II–specific probe22
E3 ubiquitin ligase Wwp1 regulates ciliary dynamics of the Hedgehog receptor Smoothened22
Nucleobindin-1 regulates ECM degradation by promoting intra-Golgi trafficking of MMPs22
Retinyl esters form lipid droplets independently of triacylglycerol and seipin22
Quality control of 40S ribosome head assembly ensures scanning competence22
Liquid–liquid phase separation facilitates the biogenesis of secretory storage granules22
Tension promotes kinetochore–microtubule release by Aurora B kinase21
c entrocortin RNA localization to centrosomes is regulated by FMRP and facilitates error-free mitosis21
ER membrane contact sites support endosomal small GTPase conversion for exosome secretion21
SARS-CoV-2 ORF10 impairs cilia by enhancing CUL2ZYG11B activity21
Phase separation and toxicity of C9orf72 poly(PR) depends on alternate distribution of arginine21
Autophagy facilitates mitochondrial rebuilding after acute heat stress via a DRP-1–dependent process21
Regulation of membrane NMDA receptors by dynamics and protein interactions21
Confounding factors from inducible systems for spatiotemporal gene expression regulation21
A loop extrusion–independent mechanism contributes to condensin I–mediated chromosome shaping21
Intersection of TKS5 and FGD1/CDC42 signaling cascades directs the formation of invadopodia21
STING controls energy stress-induced autophagy and energy metabolism via STX1721
Centriole and PCM cooperatively recruit CEP192 to spindle poles to promote bipolar spindle assembly20
Sterol and oxysterol synthases near the ciliary base activate the Hedgehog pathway20
Extracellular vesicles from neurons promote neural induction of stem cells through cyclin D120
The deubiquitylase USP9X controls ribosomal stalling20
Mechanical competition alters the cellular interpretation of an endogenous genetic program20
ESCRT, not intralumenal fragments, sorts ubiquitinated vacuole membrane proteins for degradation20
Tricellulin secures the epithelial barrier at tricellular junctions by interacting with actomyosin20
WDR60-mediated dynein-2 loading into cilia powers retrograde IFT and transition zone crossing20
Individual kinetochore-fibers locally dissipate force to maintain robust mammalian spindle structure20
Plk4 triggers autonomous de novo centriole biogenesis and maturation20
Combinatorial multivalent interactions drive cooperative assembly of the COPII coat20
O-GlcNAc modification of nuclear pore complexes accelerates bidirectional transport20
Myelination generates aberrant ultrastructure that is resolved by microglia20
The cell biology of fertilization: Gamete attachment and fusion20
Zc3h10 regulates adipogenesis by controlling translation and F-actin/mitochondria interaction20
Protein exchange is reduced in calcium-independent epithelial junctions20
Superresolution characterization of core centriole architecture20
Quantitative analysis of autophagy reveals the role of ATG9 and ATG2 in autophagosome formation20
The function of GORASPs in Golgi apparatus organization in vivo20
Genetically encoded live-cell sensor for tyrosinated microtubules20
MyD88 oligomer size functions as a physical threshold to trigger IL1R Myddosome signaling20
Aurora A kinase activation: Different means to different ends19
Lymphocyte egress signal sphingosine-1-phosphate promotes ERM-guided, bleb-based migration19
Centromeric transcription maintains centromeric cohesion in human cells19
Novel phospho-switch function of delta-catenin in dendrite development19
Mitochondria on the move: Horizontal mitochondrial transfer in disease and health19
JIP3 interacts with dynein and kinesin-1 to regulate bidirectional organelle transport19
KIF14 controls ciliogenesis via regulation of Aurora A and is important for Hedgehog signaling19
Mechanosensitive collaboration between integrins and connexins allows nutrient and antioxidant transport into the lens19
Multivalent interactions make adherens junction–cytoskeletal linkage robust during morphogenesis19
Stress granules and mTOR are regulated by membrane atg8ylation during lysosomal damage19
Stress-responsive regulation of extracellular proteostasis19
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