Journal of Biochemistry

Papers
(The median citation count of Journal of Biochemistry is 2. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-07-01 to 2025-07-01.)
ArticleCitations
SI-MOIRAI: a new method to identify and quantify the metabolic fate of nucleotides46
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum30
Putrescine Biosynthesis from Agmatine by Arginase (TtARG) in Thermus thermophilus23
Identification of the active site and characterization of a novel sporulation-specific cysteine protease YabG fromBacillus subtilis20
RMST: a long noncoding RNA involved in cancer and disease19
CdbC: a disulfide bond isomerase involved in the refolding of mycoloyltransferases in Corynebacterium glutamicum cells exposed to oxidative conditions18
Production and characterization of an Fv-clasp of rheumatoid factor, a low-affinity human autoantibody18
Microglia regulate neuronal and behavioural functions under physiological and pathological conditions18
Dermatan sulphate is an activating ligand of anaplastic lymphoma kinase17
The action of coenzyme B12-dependent diol dehydratase on 3,3,3-trifluoro-1,2-propanediol results in elimination of all the fluorides with formation of acetaldehyde16
Transcriptomic characterization of Lonrf1 at the single-cell level under pathophysiological conditions16
Variations associated with neurodevelopmental disorders affect ARF1 function and cortical development16
ZNRF1-dependent regulation of AKT activity modulates Nav subcellular localization and AIS position in neurons to regulate fear-related behaviour15
Interaction between a fluoroquinolone derivative and RNAs with a single bulge15
BACH to the ferroptosis15
Phosphorylation/dephosphorylation of PTP-PEST at Serine 39 is crucial for cell migration14
Cellular senescence in the cancer microenvironment14
A leaderless mRNA including tRNA-like sequence encodes a small peptide that regulates the expression of GcvB small RNA inEscherichia coli13
Land-breaking publications and the impact of these publications in several research areas: commentary for the 100th anniversary of Journal of Biochemistry13
Calpain-3 not only proteolyzes calpain-1 and -2 but also is a substrate for calpain-1 and -213
A refined method for high-purity isolation of uterine glandular epithelial cells in mouse13
The Journal of Biochemistry: 100 years of excellence in scientific publishing13
PLAAT1 expression triggers fragmentation of mitochondria in an enzyme activity-dependent manner12
Direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors12
Molecular connections between circadian clock and health/ageing12
Formation of hierarchical assemblies by collagen peptides derived from fish skin and bladder and their subsequent application as antiperoxide agents in lipid-rich food12
Forty years of the structure of plant-type ferredoxin12
Effects of cryptochrome-modulating compounds on circadian behavioural rhythms in zebrafish12
Characterization of recombinant murine GDE4 and GDE7, enzymes producing lysophosphatidic acid and/or cyclic phosphatidic acid11
Intracellular biliverdin dynamics during ferroptosis11
SSB promotes DnaB helicase passage through DnaA complexes at the replication origin oriC for bidirectional replication11
Perturbed collagen metabolism underlies lymphatic recanalization failure in Gata2 heterozygous deficient mice11
Suicide substrate reaction-like modification of mouse serine racemase with L-serine11
SdrR, a LysR-type regulator, responds to the mycobacterial antioxidant defense11
The potential of erythrocyte α-synuclein to differentiate dementia with Lewy bodies from Parkinson’s and Alzheimer’s diseases10
Neutral selection and clonal expansion during the development of colon cancer metastasis10
The crystal structure of the small zinc-finger protein ZifS from Thermus thermophilus HB810
Cytoplasmic zoning in membrane blebs10
Collagen isolated from human adipose tissue and its cellular affinity10
Onnamide A suppresses the severe acute respiratory syndrome-coronavirus 2 infection without inhibiting 3-chymotrypsin-like cysteine protease10
Acquisition mechanism of heme oxygenase-1 induction by heat shock in human monocytic cell line THP-1 after differentiation to macrophage-like cells10
Mitochondria-targeting siRNA screening identifies mitochondrial calcium uniporter as a factor involved in nucleoid morphology10
Method for isolation and quantification of inositol glycan produced by glycosylinositol phosphoceramide-hydrolysing phospholipase D in plants10
Genome-wide distribution of 5hmC in the dental pulp of mouse molars and incisors10
Identification of unannotated coding sequences and their physiological functions10
Sensitive immunoassay ofLegionellausing multivalent conjugates of engineered VHHs10
Upregulated mGluR5 induces ER stress and DNA damage by regulating the NMDA receptor subunit NR2B9
Sialyl-Tn antigen facilitates extracellular vesicle-mediated transfer of FAK and enhances motility of recipient cells9
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum9
ETV4 mediates the Wnt/β-catenin pathway through transcriptional activation of ANXA2 to promote hepatitis B virus-associated liver hepatocellular carcinoma progression9
Commentary for: a lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins9
Regulation of polyphosphate glucokinase gene expression through cotranscriptional processing in Mycobacterium tuberculosis H37Rv9
CDC42 missense mutations and human diseases: from neurodevelopmental disorders to autoinflammation9
Correction to: Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes9
Exploring the roles of Lem2 and Bqt4 in lipid metabolism for nuclear envelope maintenance: a novel perspective9
Correction to: The Hox-based positional memory in muscle stem cells9
CRABP2 promotes cell migration and invasion by activating PI3K/AKT and MAPK signalling pathways via upregulating LAMB3 in prostate cancer9
Chondroitin sulfate liposome: clustering toward high functional efficiency9
Characterization of recombinant photoconverting green fluorescent Akanes8
The 2024 JB Award8
Trehalose decreases mRNA and protein expressions of c-Jun and JunB in human cervical cancer HeLa cells8
Mitochondria–giant lipid droplet proximity and autophagy suppression in nitrogen-depleted oleaginous yeast Lipomyces starkeyi cells8
Post-translational modification of lysine residues in erythrocyte α-synuclein8
vp1524, a Vibrio parahaemolyticus NAD +-dependent deacetylase, regulates host response during infection by induction of host histone deacetylation8
Profiling translation in the nervous system8
Histone H2B isoform H2bc27 is expressed in the developing brain of mouse embryos8
Bisecting GlcNAc modification of angiotensin-related glycoproteins in mouse kidney7
Analysis of ribonucleotide content in the genomic DNA of ribonuclease H2 A subunit (RH2A)-knockout NIH3T3 cells after transient expression of wild-type RH2A or RH2A variants with an Aicardi–Goutières 7
γ-Secretase structure and activity are modified by alterations in its membrane localization and ambient environment7
Visualization of Reelin Secretion from Primary Cultured Neurons by Bioluminescence Imaging7
Molecular mechanisms of mechanosensing and plasticity of tendons and ligaments7
Effective plasmid delivery to a plasmid-free Bacillus natto strain by a conjugational transfer system7
Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast7
Oligomeric state of the aspartate:alanine transporter from Tetragenococcus halophilus7
Notch signaling pathway induces expression of type IV collagen in angiogenesis7
A retrospect of the structure determination of Taka-amylase A7
Multiple interfaces to recognize nucleosomal targets7
Autophagy-independent cytoprotection by optineurin from toxicity of aggregates formed by mutant huntingtin and mutant ataxin-37
Hoop-like role of the cytosolic interface helix in Vibrio PomA, an ion-conducting membrane protein, in the bacterial flagellar motor6
Thanking All Peer Reviewers6
Morphinan Evolution: The Impact of Advances in Biochemistry and Molecular Biology6
GlcNAc-Asn is a biomarker for NGLY1 deficiency6
PCYT2 synthesizes CDP-glycerol in mammals and reduced PCYT2 enhances the expression of functionally glycosylated α-dystroglycan6
Long noncoding RNAs transcribed downstream of the human β-globin locus regulate β-globin gene expression6
Biochemical characterization of medaka (Oryzias latipes) fibrinogen gamma and its gene disruption resulting in anemia as a model fish6
Biochemical characterization and mutational analysis of lysophosphatidic acid acyltransferases of Escherichia coli highlighting their involvement in the generation of membrane phospholipid dive6
Development of supercooling preservation method of adherent cultured human cells6
Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside6
CEBPB is required for NRF2-mediated drug resistance in NRF2-activated non-small cell lung cancer cells6
Correction to: Innate immune signals triggered on organelle membranes6
The NRF2 inducer CDDO-2P-Im provokes a reduction in amyloid β levels in Alzheimer’s disease model mice6
Inhibition of autophagy by Atg7 knockdown enhances chemosensitivity in gemcitabine/paclitaxel-resistant pancreatic cancer MIAPaCa2 cells6
Ever-expanding NGLY1 biology6
Novel synthetic biological study on intracellular distribution of human GlcNAc-1-phosphotransferase expressed in insect cells6
Merlin/NF2 regulates SLC7A11/xCT expression and cell viability under glucose deprivation at high cell density in glioblastoma cells6
Corrigendum to: BaeR participates in cephalosporins susceptibility by regulating the expression level of outer membrane proteins in Escherichia coli6
Protein homeostasis and degradation in quiescent neural stem cells5
Correction to: Branched ubiquitin code: from basic biology to targeted protein degradation5
Branched ubiquitin code: from basic biology to targeted protein degradation5
Binding profile of quinonoid-dihydrobiopterin to quinonoid-dihydropteridine reductase examined by in silico and in vitro analyses5
Spatial heterogeneity and functional zonation of living tissues and organs in situ5
Patient-derived gene and protein expression signatures of NGLY1 deficiency5
Structural insight into the recognition of the linear ubiquitin assembly complex by Shigella E3 ligase IpaH1.4/2.55
Cellular senescence: mechanisms and relevance to cancer and aging5
Phosphorylated SARM1 is involved in the pathological process of rotenone-induced neurodegeneration5
Supplementation of essential amino acids suppresses age-associated sleep loss and sleep fragmentation but not loss of rhythm strength under yeast-restricted malnutrition in Drosophila5
Kolaflavanone, a biflavonoid derived from medicinal plantGarcinia, is an inhibitor of mitotic kinesin Eg55
The cofactors and domains of a staphylococcal capsule-producing enzyme preserve its structure, stability, shape and dimerization ability5
Targeting senescent cells for the treatment of age-associated diseases5
Photocontrol of small GTPase Ras fused with a photoresponsive protein5
Structural basis for molecular interactions on the eukaryotic DNA sliding clamps PCNA and RAD9-RAD1-HUS15
NGLY1: insights from Caenorhabditis elegans5
Recent topics regarding macrophage in the central nervous system5
Evolution and properties of alanine racemase from Synechocystis sp. PCC68035
A lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins5
Maintenance of the Golgi ribbon structure by the KASH protein Jaw15
Ubiquitin-mediated mitochondrial regulation by MITOL/MARCHF5 at a glance5
Effect of an intermolecular disulfide bond introduced into the first loop of CH1 domain of Adalimumab Fab on thermal stability and antigen-binding activity5
Analysis of thermostability for seven Phe to Ala and six Pro to Gly mutants in the Fab constant region of adalimumab4
Thermostability optimization of the aspartate/alanine exchange transporter from Tetragenococcus halophilus4
Essential dextrin structure as donor substrate for 4-α-glucanotransferase in glycogen debranching enzyme4
Cellular senescence and its impact on the circadian clock4
Long non-coding RNA AFAP1-AS1 promotes thyroid cancer progression by sponging miR-204-3p and upregulating DUSP44
Dissection of an ABC transporter LolCDE function analyzed by photo-crosslinking4
Formation of the NLRP3 inflammasome inhibits stress granule assembly by multiple mechanisms4
Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum4
Basic structure and cytocompatibility of giant membrane vesicles derived from paraformaldehyde-exposed human cells4
Response to acute hyperglycemia and high fructose in cultured tenocytes4
Hydrogen bonds connecting the N-terminal region and the DE loop stabilize the monomeric structure of transthyretin4
Human TRPV1 and TRPA1 are receptors for bacterial quorum sensing molecules4
Investigation of serum markers of esophageal squamous cell carcinoma based on machine learning methods4
Lidocaine relieves spinal cord ischemia–reperfusion injury via long non-coding RNA MIAT-mediated Notch1 downregulation4
Inhibition of Sirt2 Decreases ApoE Secretion in Astrocytes and Microglial Cells4
Ciliary length variations impact cilia-mediated signaling and biological responses4
Photocontrol of the small GTPase Ras using its regulatory factor, GTPase-activating protein, modified with photochromic nanodevices4
Differential use of p24 family members as cargo receptors for the transport of glycosylphosphatidylinositol-anchored proteins and Wnt14
Crystallographic studies of cytochrome c and cytochrome c oxidase4
Cryo-electron microscopy reveals the impact of the nucleosome dynamics on transcription activity4
Chondroitin sulfate glycosaminoglycans function as extra/pericellular ligands for cell surface receptors4
JB: A cradle for young Japanese biochemists4
Identification of two critical amino acid residues in short-chain aldehyde-responsive odorant receptors4
TT-pocket/HIRAN: binding to 3′-terminus of DNA for recognition and processing of stalled replication forks3
Comparative Analysis of Site-Specific N-glycosylation of LAMP1 from Breast Cancer Tissues3
Distribution and evolution of the serine/aspartate racemase family in invertebrates. II. Frequent and widespread parallel evolution of aspartate racemase3
The HP1 hinge region: more than just a linker for heterochromatin3
The 2023 JB Reviewer Award3
Towards the in vivo identification of protein–protein interactions3
Amino acid residues responsible for the different pH dependency of cell-specific ferredoxins in the electron transfer reaction with ferredoxin-NADP+ reductase from maize leaves3
Cytoplasmic zoning by protein phase transition after membrane permeabilization3
Corrigendum to: Escherichia coli amino acid auxotrophic expression host strains for investigating protein structure-function relationships3
The molecular mechanisms of mammalian sperm maturation regulated by NELL2-ROS1 lumicrine signaling3
Generation of endoplasmic reticulum stress-dependent reactive oxygen species mediates TGF-β1-induced podocyte migration3
Screening of α-amino acid ester acyl transferase variant with improved activity by combining rational and random mutagenesis3
MAB21L4 regulates the TGF-β-induced expression of target genes in epidermal keratinocytes3
Mechanisms of mitochondrial reorganization3
Identification and biochemical characterization of a heteromeric cis-prenyltransferase from the thermophilic archaeon Archaeoglobus fulgidus3
Reactive oxygen species are associated with the inhibitory effect of N-(4-hydroxyphenyl)-retinamide on the entry of the severe acute respiratory syndrome-coronavirus 23
Ubiquitin-dependent rapid degradation conceals a cell-protective function of cytoplasmic SIRT3 against oxidative stress3
Degradation of glycosylinositol phosphoceramide during plant tissue homogenization3
Mitochondria metabolomics reveals a role of β-nicotinamide mononucleotide metabolism in mitochondrial DNA replication3
Cloning and characterization of Thioredoxin 1 from the Cnidarian Hydra3
Proofreading of protein localization mediated by a mitochondrial AAA-ATPase Msp13
Mtc6/Ehg2 is a novel endoplasmic reticulum-resident glycoprotein essential for high-pressure tolerance3
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of the bulged residues3
NMR analysis of interaction between RNA structure elements and small molecules3
2,2,6,6-Tetramethylpiperidine-1-oxyl acts as a volatile inhibitor of ferroptosis and neurological injury3
Decreased EMILIN2 correlates to metabolism phenotype and poor prognosis of ovarian cancer3
Comprehensive analysis of non-selective and selective autophagy in yeast atg mutants and characterization of autophagic activity in the absence of the Atg8 conjugation system3
Structural basis for the linkage specificity of ubiquitin-binding domain and deubiquitinase3
The 2024 JB Reviewer Award3
An inexpensive, simple and effective method of genome DNA fragmentation for NGS libraries3
Commentary on ‘Structural insights into a bacterial β-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: towards the understanding of the aglycone recognition mechanism by t3
In situ digestion of alcohol-fixed cells for quantitative proteomics3
Identification of APBB1 as a substrate for anaplastic lymphoma kinase3
Two-sided function of osteopontin during osteoblast differentiation3
Senso-immunology: the past, present, and future3
Expression of Concern: Circ_0000190 sponges miR-382-5p to suppress cell proliferation and motility and promote cell death by targeting ZNRF3 in gastric cancer3
Epitope-dependent thermodynamic signature of single-domain antibodies against hen egg lysozyme3
Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones3
Ferroptosis model system by the re-expression of BACH13
Multimerization of small G-protein H-Ras induced by chemical modification at hyper variable region with caged compound2
The Nuclear Cap-Binding Complex, a multitasking binding partner of RNA polymerase II transcripts2
Crystal structure of Klebsiella pneumoniae maltohexaose-producing α-amylase2
Inter-domain interaction of ferredoxin-NADP+ reductase important for the negative cooperativity by ferredoxin and NADP(H)2
Fragment-Based Drug Discovery forTrypanosoma bruceiGlycosylphosphatidylinositol-Specific Phospholipase C through Biochemical and WaterLOGSY-NMR Methods2
The JB Award2
C-terminal truncation is a prominent post-translational modification of human erythrocyte α-synuclein2
Efficient DNA/RNA extraction from tarsal plates by SK mill, a freeze-crush apparatus2
2-Oxoglutarate-dependent dioxygenases as oxygen sensors: their importance in health and disease2
Distribution and role of d-glutamate, a novel d-amino acid identified in animals, in the reproductive tissues of male kuruma prawn Marsupenaeus japonicus2
Rethinking c-Fos for understanding drug action in the brain2
Reform of Journal of Biochemistry2
Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium2
Maintaining a neutral range disperses myosin molecules under salt-free conditions2
Thermodynamic stability of human lipocalin-type prostaglandin D synthase under various pH conditions2
Multi-dimensional condensation of intracellular biomolecules2
Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography2
Cancer-associated mutations in SF3B1 disrupt the interaction between SF3B1 and DDX422
Lemur tail kinase 1 (LMTK1) regulates the endosomal localization of β-secretase BACE12
Lysine Acetyltransferases (KATs) in Disguise: Diseases Implications2
Nicotinamide-N-methyltransferase regulates lipid metabolism via SAM and 1-methylnicotinamide in the AML12 hepatocyte cell line2
Msp1-mediated proofreading mechanism for localization of tail-anchored membrane proteins2
Inhibitory machinery for the functional dystroglycan glycosylation2
Interaction of FlhF, SRP-like GTPase with FliF, MS ring component assembling the initial structure of flagella in marine Vibrio2
Real-time monitoring of polyacrylamide gel electrophoresis by the shadowgraph technique2
Cancer-associated SF3B1 mutations inhibit mRNA nuclear export by disrupting SF3B1–THOC5 interactions2
Exploring protein lipidation by mass spectrometry-based proteomics2
Protein phosphatase 6 promotes neurite outgrowth by promoting mTORC2 activity in N2a cells2
Supercomplex formation of mitochondrial respiratory chain complexes in leukocytes from patients with neurodegenerative diseases2
Valosin-containing protein mediates DNA-dependent protein kinase activation in response to DNA topoisomerase II-associated DNA double-strand breaks2
Three glutamic acid residues in the cytoplasmic N-terminal tail of long-form GlcAT-P define Golgi-to-ER trafficking2
Carbohydrate-binding ability of a recombinant protein containing the DM9 motif from Drosophila melanogaster2
Molecular structure and function of mysterin/RNF2132
Capn4 aggravates angiotensin II-induced cardiac hypertrophy by activating the IGF-AKT signalling pathway2
Availability of aldo-keto reductase 1C3 and ATP-binding cassette B1 as therapeutic targets for alleviating paclitaxel resistance in breast cancer MCF7 cells2
CREG1 administration stimulates BAT thermogenesis and improves diet-induced obesity in mice2
Identification of a novel Eps 15 homology domain-containing protein 1 (EHD1) and EHD4-binding motif in phostensin2
The SH3 binding site in front of the WH1 domain contributes to the membrane binding of the BAR domain protein endophilin A22
Thanking All Peer Reviewers2
NRF2 pathway activation attenuates ageing-related renal phenotypes due to α-klotho deficiency2
Erratum2
Inhibition of human glutathione transferase by catechin and gossypol: comparative structural analysis by kinetic properties, molecular docking and their efficacy on the viability of human MCF-7 cells2
Evaluation of the cyclic single-chain Fv antibody derived from nivolumab by biophysical analyses and in vitro cell-based bioassay2
Non-triple helical form of type IV collagen alpha1 chain suppresses vascular endothelial-cadherin mediated cell-to-cell junctions2
Adipose tissue thermogenesis by calcium futile cycling2
The JB Reviewer Award2
Polyamines produced by an extreme thermophile are essential for cell growth at high temperature2
Erratum2
Repeat-associated non-AUG translation in neuromuscular diseases: mechanisms and therapeutic insights2
Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes2
New insights into the regulation and roles of phosphatidylinositol 3,4-bisphosphate2
0.091804027557373