Journal of Biochemistry

Article	Citations
SI-MOIRAI: a new method to identify and quantify the metabolic fate of nucleotides	45
Dermatan sulphate is an activating ligand of anaplastic lymphoma kinase	29
The action of coenzyme B12-dependent diol dehydratase on 3,3,3-trifluoro-1,2-propanediol results in elimination of all the fluorides with formation of acetaldehyde	25
Effects of genetic polymorphisms on the sulfation of doxorubicin by human SULT1C4 allozymes	22
BACH to the ferroptosis	20
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	19
Putrescine Biosynthesis from Agmatine by Arginase (TtARG) in Thermus thermophilus	17
Microglia regulate neuronal and behavioural functions under physiological and pathological conditions	16
Identification of the active site and characterization of a novel sporulation-specific cysteine protease YabG fromBacillus subtilis	16
Cellular senescence in the cancer microenvironment	16
Production and characterization of an Fv-clasp of rheumatoid factor, a low-affinity human autoantibody	15
Transcriptomic characterization of Lonrf1 at the single-cell level under pathophysiological conditions	15
CdbC: a disulfide bond isomerase involved in the refolding of mycoloyltransferases in Corynebacterium glutamicum cells exposed to oxidative conditions	15
Variations associated with neurodevelopmental disorders affect ARF1 function and cortical development	14
Land-breaking publications and the impact of these publications in several research areas: commentary for the 100th anniversary of Journal of Biochemistry	14
RMST: a long noncoding RNA involved in cancer and disease	14
Phosphorylation/dephosphorylation of PTP-PEST at Serine 39 is crucial for cell migration	14
Interaction between a fluoroquinolone derivative and RNAs with a single bulge	14
Calpain-3 not only proteolyzes calpain-1 and -2 but also is a substrate for calpain-1 and -2	13
Effects of cryptochrome-modulating compounds on circadian behavioural rhythms in zebrafish	13
PLAAT1 expression triggers fragmentation of mitochondria in an enzyme activity-dependent manner	13
The Journal of Biochemistry: 100 years of excellence in scientific publishing	13
A leaderless mRNA including tRNA-like sequence encodes a small peptide that regulates the expression of GcvB small RNA inEscherichia coli	13
Molecular connections between circadian clock and health/ageing	12
Direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors	11

Characterization of recombinant murine GDE4 and GDE7, enzymes producing lysophosphatidic acid and/or cyclic phosphatidic acid	11
Formation of hierarchical assemblies by collagen peptides derived from fish skin and bladder and their subsequent application as antiperoxide agents in lipid-rich food	11
SSB promotes DnaB helicase passage through DnaA complexes at the replication origin oriC for bidirectional replication	11
Intracellular biliverdin dynamics during ferroptosis	10
Collagen isolated from human adipose tissue and its cellular affinity	10
Method for isolation and quantification of inositol glycan produced by glycosylinositol phosphoceramide-hydrolysing phospholipase D in plants	10
SdrR, a LysR-type regulator, responds to the mycobacterial antioxidant defense	10
A refined method for high-purity isolation of uterine glandular epithelial cells in mouse	10
Genome-wide distribution of 5hmC in the dental pulp of mouse molars and incisors	10
Perturbed collagen metabolism underlies lymphatic recanalization failure in Gata2 heterozygous deficient mice	10
Forty years of the structure of plant-type ferredoxin	10
Mitochondria-targeting siRNA screening identifies mitochondrial calcium uniporter as a factor involved in nucleoid morphology	10
Suicide substrate reaction-like modification of mouse serine racemase with L-serine	10
Identification of unannotated coding sequences and their physiological functions	9
The potential of erythrocyte α-synuclein to differentiate dementia with Lewy bodies from Parkinson’s and Alzheimer’s diseases	9
Chondroitin sulfate liposome: clustering toward high functional efficiency	9
Cytoplasmic zoning in membrane blebs	9
Neutral selection and clonal expansion during the development of colon cancer metastasis	9
Sensitive immunoassay ofLegionellausing multivalent conjugates of engineered VHHs	9
Commentary for: a lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	9
ETV4 mediates the Wnt/β-catenin pathway through transcriptional activation of ANXA2 to promote hepatitis B virus-associated liver hepatocellular carcinoma progression	9
Onnamide A suppresses the severe acute respiratory syndrome-coronavirus 2 infection without inhibiting 3-chymotrypsin-like cysteine protease	9
Heme oxygenase-1 induction by heat shock in rat hepatoma cell line is regulated by the coordinated function of HSF1, NRF2 and BACH1	9
Exploring the roles of Lem2 and Bqt4 in lipid metabolism for nuclear envelope maintenance: a novel perspective	9
Correction to: The Hox-based positional memory in muscle stem cells	8
Correction to: Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	8
Upregulated mGluR5 induces ER stress and DNA damage by regulating the NMDA receptor subunit NR2B	8
CRABP2 promotes cell migration and invasion by activating PI3K/AKT and MAPK signalling pathways via upregulating LAMB3 in prostate cancer	8
Sialyl-Tn antigen facilitates extracellular vesicle-mediated transfer of FAK and enhances motility of recipient cells	8
Regulation of polyphosphate glucokinase gene expression through cotranscriptional processing in Mycobacterium tuberculosis H37Rv	8
CDC42 missense mutations and human diseases: from neurodevelopmental disorders to autoinflammation	8
Erratum to: Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	7
Mitochondria–giant lipid droplet proximity and autophagy suppression in nitrogen-depleted oleaginous yeast Lipomyces starkeyi cells	7
The 2024 JB Award	7
Multiple interfaces to recognize nucleosomal targets	7
Notch signaling pathway induces expression of type IV collagen in angiogenesis	7
vp1524, a Vibrio parahaemolyticus NAD +-dependent deacetylase, regulates host response during infection by induction of host histone deacetylation	7
Profiling translation in the nervous system	7
Molecular mechanisms of mechanosensing and plasticity of tendons and ligaments	7
A retrospect of the structure determination of Taka-amylase A	7
Characterization of recombinant photoconverting green fluorescent Akanes	7
Trehalose decreases mRNA and protein expressions of c-Jun and JunB in human cervical cancer HeLa cells	7
Post-translational modification of lysine residues in erythrocyte α-synuclein	7
Visualization of Reelin Secretion from Primary Cultured Neurons by Bioluminescence Imaging	7
Autophagy-independent cytoprotection by optineurin from toxicity of aggregates formed by mutant huntingtin and mutant ataxin-3	6
Effective plasmid delivery to a plasmid-free Bacillus natto strain by a conjugational transfer system	6
Biochemical characterization and mutational analysis of lysophosphatidic acid acyltransferases of Escherichia coli highlighting their involvement in the generation of membrane phospholipid dive	6
Hoop-like role of the cytosolic interface helix in Vibrio PomA, an ion-conducting membrane protein, in the bacterial flagellar motor	6
Biochemical characterization of medaka (Oryzias latipes) fibrinogen gamma and its gene disruption resulting in anemia as a model fish	6
Thanking All Peer Reviewers	6

Analysis of ribonucleotide content in the genomic DNA of ribonuclease H2 A subunit (RH2A)-knockout NIH3T3 cells after transient expression of wild-type RH2A or RH2A variants with an Aicardi–Goutières	6
Oligomeric state of the aspartate:alanine transporter from Tetragenococcus halophilus	6
Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast	6
The NRF2 inducer CDDO-2P-Im provokes a reduction in amyloid β levels in Alzheimer’s disease model mice	6
Corrigendum to: BaeR participates in cephalosporins susceptibility by regulating the expression level of outer membrane proteins in Escherichia coli	6
Development of supercooling preservation method of adherent cultured human cells	6
A slight bending of an α-helix in FliM creates a counterclockwise-locked structure of the flagellar motor in Vibrio	6
γ-Secretase structure and activity are modified by alterations in its membrane localization and ambient environment	6
Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside	6
PCYT2 synthesizes CDP-glycerol in mammals and reduced PCYT2 enhances the expression of functionally glycosylated α-dystroglycan	6
Phosphorylated SARM1 is involved in the pathological process of rotenone-induced neurodegeneration	6
Long non-coding RNA AFAP1-AS1 promotes thyroid cancer progression by sponging miR-204-3p and upregulating DUSP4	5
Effect of an intermolecular disulfide bond introduced into the first loop of CH1 domain of Adalimumab Fab on thermal stability and antigen-binding activity	5
Evolution and properties of alanine racemase from Synechocystis sp. PCC6803	5
Novel synthetic biological study on intracellular distribution of human GlcNAc-1-phosphotransferase expressed in insect cells	5
GlcNAc-Asn is a biomarker for NGLY1 deficiency	5
Kolaflavanone, a biflavonoid derived from medicinal plantGarcinia, is an inhibitor of mitotic kinesin Eg5	5
Recent topics regarding macrophage in the central nervous system	5
Investigation of serum markers of esophageal squamous cell carcinoma based on machine learning methods	5
Branched ubiquitin code: from basic biology to targeted protein degradation	5
NGLY1: insights from Caenorhabditis elegans	5
Morphinan Evolution: The Impact of Advances in Biochemistry and Molecular Biology	5
Correction to: Branched ubiquitin code: from basic biology to targeted protein degradation	5
Merlin/NF2 regulates SLC7A11/xCT expression and cell viability under glucose deprivation at high cell density in glioblastoma cells	5
Cellular senescence: mechanisms and relevance to cancer and aging	5
Binding profile of quinonoid-dihydrobiopterin to quinonoid-dihydropteridine reductase examined by in silico and in vitro analyses	5
A lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	5
Structural basis for molecular interactions on the eukaryotic DNA sliding clamps PCNA and RAD9-RAD1-HUS1	5
Ubiquitin-mediated mitochondrial regulation by MITOL/MARCHF5 at a glance	5
Supplementation of essential amino acids suppresses age-associated sleep loss and sleep fragmentation but not loss of rhythm strength under yeast-restricted malnutrition in Drosophila	5
CEBPB is required for NRF2-mediated drug resistance in NRF2-activated non-small cell lung cancer cells	5
Long noncoding RNAs transcribed downstream of the human β-globin locus regulate β-globin gene expression	5
Ever-expanding NGLY1 biology	5
Protein homeostasis and degradation in quiescent neural stem cells	5
MiR-133a-3p inhibits the malignant progression of oesophageal cancer by targeting CDCA8	4
Efficient induction of proximity-dependent labelling by biotin feeding in BMAL1-BioID knock-in mice	4
Development of a liquid chromatography–electrospray ionization tandem mass spectrometric method for the simultaneous analysis of free fatty acids	4
Expression of Concern: Circ_0000190 sponges miR-382-5p to suppress cell proliferation and motility and promote cell death by targeting ZNRF3 in gastric cancer	4
Karyopherin-βs play a key role as a phase separation regulator	4
Essential dextrin structure as donor substrate for 4-α-glucanotransferase in glycogen debranching enzyme	4
Chondroitin sulfate glycosaminoglycans function as extra/pericellular ligands for cell surface receptors	4
Cryo-electron microscopy reveals the impact of the nucleosome dynamics on transcription activity	4
Photocontrol of small GTPase Ras fused with a photoresponsive protein	4
Spatial heterogeneity and functional zonation of living tissues and organs in situ	4
The cofactors and domains of a staphylococcal capsule-producing enzyme preserve its structure, stability, shape and dimerization ability	4
Cellular senescence and its impact on the circadian clock	4
The molecular mechanisms of mammalian sperm maturation regulated by NELL2-ROS1 lumicrine signaling	4
Identification of two critical amino acid residues in short-chain aldehyde-responsive odorant receptors	4
Formation of the NLRP3 inflammasome inhibits stress granule assembly by multiple mechanisms	4
Lidocaine relieves spinal cord ischemia–reperfusion injury via long non-coding RNA MIAT-mediated Notch1 downregulation	4
Human TRPV1 and TRPA1 are receptors for bacterial quorum sensing molecules	4
JB: A cradle for young Japanese biochemists	4
Targeting senescent cells for the treatment of age-associated diseases	4
Dissection of an ABC transporter LolCDE function analyzed by photo-crosslinking	4
Patient-derived gene and protein expression signatures of NGLY1 deficiency	4
Hydrogen bonds connecting the N-terminal region and the DE loop stabilize the monomeric structure of transthyretin	4
Structural insights into the enhanced thermostability of cysteine substitution mutants of L-histidine decarboxylase from Photobacterium phosphoreum	4
Inhibition of Sirt2 Decreases ApoE Secretion in Astrocytes and Microglial Cells	4
Analysis of thermostability for seven Phe to Ala and six Pro to Gly mutants in the Fab constant region of adalimumab	4
Differential use of p24 family members as cargo receptors for the transport of glycosylphosphatidylinositol-anchored proteins and Wnt1	4
A mutant equipped with a regenerated disulphide for the missing His loop of a serine protease zymogen in the horseshoe crab coagulation cascade	4
Crystallographic studies of cytochrome c and cytochrome c oxidase	4
Structural insight into the recognition of the linear ubiquitin assembly complex by Shigella E3 ligase IpaH1.4/2.5	4
Maintenance of the Golgi ribbon structure by the KASH protein Jaw1	4
Screening of α-amino acid ester acyl transferase variant with improved activity by combining rational and random mutagenesis	3
Mechanisms of mitochondrial reorganization	3
Cloning and characterization of Thioredoxin 1 from the Cnidarian Hydra	3
Identification of APBB1 as a substrate for anaplastic lymphoma kinase	3
Amino acid residues responsible for the different pH dependency of cell-specific ferredoxins in the electron transfer reaction with ferredoxin-NADP+ reductase from maize leaves	3
In situ digestion of alcohol-fixed cells for quantitative proteomics	3
Two-sided function of osteopontin during osteoblast differentiation	3
Proofreading of protein localization mediated by a mitochondrial AAA-ATPase Msp1	3
Thermostability optimization of the aspartate/alanine exchange transporter from Tetragenococcus halophilus	3
Basic structure and cytocompatibility of giant membrane vesicles derived from paraformaldehyde-exposed human cells	3
Toxicity and membrane perturbation properties of the ribotoxin-like protein Ageritin	3
2,2,6,6-Tetramethylpiperidine-1-oxyl acts as a volatile inhibitor of ferroptosis and neurological injury	3
Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones	3
Distribution and evolution of the serine/aspartate racemase family in invertebrates. II. Frequent and widespread parallel evolution of aspartate racemase	3
Ferroptosis model system by the re-expression of BACH1	3
Mitochondria metabolomics reveals a role of β-nicotinamide mononucleotide metabolism in mitochondrial DNA replication	3

Corrigendum to: Escherichia coli amino acid auxotrophic expression host strains for investigating protein structure-function relationships	3
Epitope-dependent thermodynamic signature of single-domain antibodies against hen egg lysozyme	3
Cytoplasmic zoning by protein phase transition after membrane permeabilization	3
Photocontrol of the small GTPase Ras using its regulatory factor, GTPase-activating protein, modified with photochromic nanodevices	3
Towards the in vivo identification of protein–protein interactions	3
Senso-immunology: the past, present, and future	3
The 2023 JB Reviewer Award	3
An inexpensive, simple and effective method of genome DNA fragmentation for NGS libraries	3
Generation of endoplasmic reticulum stress-dependent reactive oxygen species mediates TGF-β1-induced podocyte migration	3
NMR analysis of interaction between RNA structure elements and small molecules	3
MAB21L4 regulates the TGF-β-induced expression of target genes in epidermal keratinocytes	3
Decreased EMILIN2 correlates to metabolism phenotype and poor prognosis of ovarian cancer	3
Mtc6/Ehg2 is a novel endoplasmic reticulum-resident glycoprotein essential for high-pressure tolerance	3
Response to acute hyperglycemia and high fructose in cultured tenocytes	3
Ciliary length variations impact cilia-mediated signaling and biological responses	3
Molecular structure and function of mysterin/RNF213	2
Inhibitory machinery for the functional dystroglycan glycosylation	2
Supercomplex formation of mitochondrial respiratory chain complexes in leukocytes from patients with neurodegenerative diseases	2
Msp1-mediated proofreading mechanism for localization of tail-anchored membrane proteins	2
Exploring protein lipidation by mass spectrometry-based proteomics	2
2-Oxoglutarate-dependent dioxygenases as oxygen sensors: their importance in health and disease	2
Evaluation of the cyclic single-chain Fv antibody derived from nivolumab by biophysical analyses and in vitro cell-based bioassay	2
The SH3 binding site in front of the WH1 domain contributes to the membrane binding of the BAR domain protein endophilin A2	2
Multimerization of small G-protein H-Ras induced by chemical modification at hyper variable region with caged compound	2
Thermodynamic stability of human lipocalin-type prostaglandin D synthase under various pH conditions	2
Comprehensive analysis of non-selective and selective autophagy in yeast atg mutants and characterization of autophagic activity in the absence of the Atg8 conjugation system	2
Rethinking c-Fos for understanding drug action in the brain	2
Erratum	2
Identification and biochemical characterization of a heteromeric cis-prenyltransferase from the thermophilic archaeon Archaeoglobus fulgidus	2
Crystal structure of Tam41 cytidine diphosphate diacylglycerol synthase from a Firmicutes bacterium	2
Real-time monitoring of polyacrylamide gel electrophoresis by the shadowgraph technique	2
Comparative Analysis of Site-Specific N-glycosylation of LAMP1 from Breast Cancer Tissues	2
The HP1 hinge region: more than just a linker for heterochromatin	2
The JB Award	2
CREG1 administration stimulates BAT thermogenesis and improves diet-induced obesity in mice	2
Repeat-associated non-AUG translation in neuromuscular diseases: mechanisms and therapeutic insights	2
C-terminal truncation is a prominent post-translational modification of human erythrocyte α-synuclein	2
Reform of Journal of Biochemistry	2
NRF2 pathway activation attenuates ageing-related renal phenotypes due to α-klotho deficiency	2
Nicotinamide-N-methyltransferase regulates lipid metabolism via SAM and 1-methylnicotinamide in the AML12 hepatocyte cell line	2
Interaction of FlhF, SRP-like GTPase with FliF, MS ring component assembling the initial structure of flagella in marine Vibrio	2
Thanking All Peer Reviewers	2
Availability of aldo-keto reductase 1C3 and ATP-binding cassette B1 as therapeutic targets for alleviating paclitaxel resistance in breast cancer MCF7 cells	2
New insights into the regulation and roles of phosphatidylinositol 3,4-bisphosphate	2
Capn4 aggravates angiotensin II-induced cardiac hypertrophy by activating the IGF-AKT signalling pathway	2
Inhibition of human glutathione transferase by catechin and gossypol: comparative structural analysis by kinetic properties, molecular docking and their efficacy on the viability of human MCF-7 cells	2
TT-pocket/HIRAN: binding to 3′-terminus of DNA for recognition and processing of stalled replication forks	2
Protein phosphatase 6 promotes neurite outgrowth by promoting mTORC2 activity in N2a cells	2
Erratum	2
Cancer-associated mutations in SF3B1 disrupt the interaction between SF3B1 and DDX42	2
Polyamines produced by an extreme thermophile are essential for cell growth at high temperature	2
Reactive oxygen species are associated with the inhibitory effect of N-(4-hydroxyphenyl)-retinamide on the entry of the severe acute respiratory syndrome-coronavirus 2	2
Degradation of glycosylinositol phosphoceramide during plant tissue homogenization	2
Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography	2
Elastolytic activity is associated with inflammation in bladder cancer	2
Multi-dimensional condensation of intracellular biomolecules	2
Fragment-Based Drug Discovery forTrypanosoma bruceiGlycosylphosphatidylinositol-Specific Phospholipase C through Biochemical and WaterLOGSY-NMR Methods	2
Inter-domain interaction of ferredoxin-NADP+ reductase important for the negative cooperativity by ferredoxin and NADP(H)	2
Non-triple helical form of type IV collagen alpha1 chain suppresses vascular endothelial-cadherin mediated cell-to-cell junctions	2
Identification of a novel Eps 15 homology domain-containing protein 1 (EHD1) and EHD4-binding motif in phostensin	2
Cancer-associated SF3B1 mutations inhibit mRNA nuclear export by disrupting SF3B1–THOC5 interactions	2
Retinoic acid stimulates transcription of the rat SHARP-2 gene via multiple pathways	2
Carbohydrate-binding ability of a recombinant protein containing the DM9 motif from Drosophila melanogaster	2
Structural basis for the linkage specificity of ubiquitin-binding domain and deubiquitinase	2
Lysine Acetyltransferases (KATs) in Disguise: Diseases Implications	2
Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	2
Adipose tissue thermogenesis by calcium futile cycling	2
The JB Reviewer Award	2
Efficient DNA/RNA extraction from tarsal plates by SK mill, a freeze-crush apparatus	2
The Nuclear Cap-Binding Complex, a multitasking binding partner of RNA polymerase II transcripts	2
Ubiquitin-dependent rapid degradation conceals a cell-protective function of cytoplasmic SIRT3 against oxidative stress	2
The 2024 JB Reviewer Award	2
Commentary on ‘Structural insights into a bacterial β-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: towards the understanding of the aglycone recognition mechanism by t	2
Distribution and role of d-glutamate, a novel d-amino acid identified in animals, in the reproductive tissues of male kuruma prawn Marsupenaeus japonicus	2