Journal of Biochemistry

Article	Citations
ZNRF1-dependent regulation of AKT activity modulates Nav subcellular localization and AIS position in neurons to regulate fear-related behaviour	36
RMST: a long noncoding RNA involved in cancer and disease	28
Variations associated with neurodevelopmental disorders affect ARF1 function and cortical development	28
Production and characterization of an Fv-clasp of rheumatoid factor, a low-affinity human autoantibody	27
Microglia regulate neuronal and behavioural functions under physiological and pathological conditions	26
BACH to the ferroptosis	25
The action of coenzyme B12-dependent diol dehydratase on 3,3,3-trifluoro-1,2-propanediol results in elimination of all the fluorides with formation of acetaldehyde	24
Putrescine Biosynthesis from Agmatine by Arginase (TtARG) in Thermus thermophilus	23
Cellular senescence in the cancer microenvironment	22
FRET-based biosensor moxCRONOS enables quantitative monitoring of macromolecular crowding in organelles and protein aggregates	21
CdbC: a disulfide bond isomerase involved in the refolding of mycoloyltransferases in Corynebacterium glutamicum cells exposed to oxidative conditions	20
Transcriptomic characterization of Lonrf1 at the single-cell level under pathophysiological conditions	20
Land-breaking publications and the impact of these publications in several research areas: commentary for the 100th anniversary of Journal of Biochemistry	19
Phosphorylation/dephosphorylation of PTP-PEST at Serine 39 is crucial for cell migration	18
The Journal of Biochemistry: 100 years of excellence in scientific publishing	18
Calpain-3 not only proteolyzes calpain-1 and -2 but also is a substrate for calpain-1 and -2	17
Intracellular biliverdin dynamics during ferroptosis	16
SdrR, a LysR-type regulator, responds to the mycobacterial antioxidant defense	16
Phospholipase A and acyltransferases as novel regulator of organelle dynamics	16
Formation of hierarchical assemblies by collagen peptides derived from fish skin and bladder and their subsequent application as antiperoxide agents in lipid-rich food	16
SSB promotes DnaB helicase passage through DnaA complexes at the replication origin oriC for bidirectional replication	16
A refined method for high-purity isolation of uterine glandular epithelial cells in mouse	16
Direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors	15
PLAAT1 expression triggers fragmentation of mitochondria in an enzyme activity-dependent manner	15
Perturbed collagen metabolism underlies lymphatic recanalization failure in Gata2 heterozygous deficient mice	15

Suicide substrate reaction-like modification of mouse serine racemase with L-serine	14
Collagen isolated from human adipose tissue and its cellular affinity	14
The potential of erythrocyte α-synuclein to differentiate dementia with Lewy bodies from Parkinson’s and Alzheimer’s diseases	14
The crystal structure of the small zinc-finger protein ZifS from Thermus thermophilus HB8	13
Neutral selection and clonal expansion during the development of colon cancer metastasis	12
Onnamide A suppresses the severe acute respiratory syndrome-coronavirus 2 infection without inhibiting 3-chymotrypsin-like cysteine protease	12
Method for isolation and quantification of inositol glycan produced by glycosylinositol phosphoceramide-hydrolysing phospholipase D in plants	12
Observation of redistribution for local conformational dynamics in cross-reactive antibody design	12
Identification of unannotated coding sequences and their physiological functions	12
Thanking all peer reviewers	12
A stress granule-associated RNA-binding protein FAM120A drives cisplatin resistance in non-small cell lung cancer	12
Acquisition mechanism of heme oxygenase-1 induction by heat shock in human monocytic cell line THP-1 after differentiation to macrophage-like cells	11
CRABP2 promotes cell migration and invasion by activating PI3K/AKT and MAPK signalling pathways via upregulating LAMB3 in prostate cancer	11
DDX5: a versatile RNA helicase in cancer and cell fate determination—linking c-Myc and JAK2 V617F signalling to emerging therapeutics	11
Commentary for: a lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	11
Correction to: The Hox-based positional memory in muscle stem cells	11
Mitochondria-targeting siRNA screening identifies mitochondrial calcium uniporter as a factor involved in nucleoid morphology	11
Exploring the roles of Lem2 and Bqt4 in lipid metabolism for nuclear envelope maintenance: a novel perspective	11
A two-tiered epigenetic mechanism ensures imprint stability after fertilization: insights from the Igf2/H19 locus	11
Chondroitin sulfate liposome: clustering toward high functional efficiency	10
Comprehensive identification of proteins interacting with long non-coding RNA TUG1 in R-loop regulation	10
Endothelial RhoA is essential for embryonic and postnatal vascular development by regulating KLF2–Notch1 signaling	10
Cytoplasmic zoning in membrane blebs	10
Sensitive immunoassay ofLegionellausing multivalent conjugates of engineered VHHs	10
CDC42 missense mutations and human diseases: from neurodevelopmental disorders to autoinflammation	10
Correction to: Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	10
Characterization of recombinant photoconverting green fluorescent Akanes	9
Phosphatidylinositol-specific phospholipase C across biological kingdoms: domain organization, functions and regulation	8
Molecular mechanisms of mechanosensing and plasticity of tendons and ligaments	8
Post-translational modification of lysine residues in erythrocyte α-synuclein	8
The 2024 JB Award	8
Notch signaling pathway induces expression of type IV collagen in angiogenesis	8
Comparative glycomic analysis of Mimiviridae and Marseilleviridae uncovers host-related and lineage-specif	8
Trehalose decreases mRNA and protein expressions of c-Jun and JunB in human cervical cancer HeLa cells	8
Mitochondria–giant lipid droplet proximity and autophagy suppression in nitrogen-depleted oleaginous yeast Lipomyces starkeyi cells	8
Histone H2B isoform H2bc27 is expressed in the developing brain of mouse embryos	8
Bisecting GlcNAc modification of angiotensin-related glycoproteins in mouse kidney	8
Analysis of ribonucleotide content in the genomic DNA of ribonuclease H2 A subunit (RH2A)-knockout NIH3T3 cells after transient expression of wild-type RH2A or RH2A variants with an Aicardi–Goutières	7
Oligomeric state of the aspartate:alanine transporter from Tetragenococcus halophilus	7
Effective plasmid delivery to a plasmid-free Bacillus natto strain by a conjugational transfer system	7
Coiled-coils as emerging drivers of liquid–liquid phase separation	7
Biochemical characterization and mutational analysis of lysophosphatidic acid acyltransferases of Escherichia coli highlighting their involvement in the generation of membrane phospholipid dive	7
Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside	7
Profiling translation in the nervous system	7
Improving purity and apparent thermal stability of single-chain Fv antibodies by heat treatment in a soluble E. coli cytoplasmic expression system	7
Inhibition of autophagy by Atg7 knockdown enhances chemosensitivity in gemcitabine/paclitaxel-resistant pancreatic cancer MIAPaCa2 cells	7
Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast	7
Structure of chloramphenicol-bound MexB reveals residues in the distal binding pocket that are critical for substrate recognition	6
Biochemical characterization of medaka (Oryzias latipes) fibrinogen gamma and its gene disruption resulting in anemia as a model fish	6
Novel synthetic biological study on intracellular distribution of human GlcNAc-1-phosphotransferase expressed in insect cells	6

Regulatory dynamics of monosomes and polysomes in cellular adaptation	6
The NRF2 inducer CDDO-2P-Im provokes a reduction in amyloid β levels in Alzheimer’s disease model mice	6
Individual Short-Chain Fatty Acids Differentially Reprogram Transcriptional States in Colorectal Cancer Cells	6
Thanking All Peer Reviewers	6
The insulin/IGF receptor puzzle in pancreatic β-cell recovery: a missing link for diabetes therapy?	6
A novel target for the insulin signaling pathway in glucose-mediated growth regulation	6
Innate immune signalling in the adipocyte	6
Phosphorylated SARM1 is involved in the pathological process of rotenone-induced neurodegeneration	6
Corrigendum to: BaeR participates in cephalosporins susceptibility by regulating the expression level of outer membrane proteins in Escherichia coli	6
Correction to: Innate immune signals triggered on organelle membranes	6
Development of supercooling preservation method of adherent cultured human cells	6
Morphinan Evolution: The Impact of Advances in Biochemistry and Molecular Biology	6
Protein homeostasis and degradation in quiescent neural stem cells	5
Photocontrol of small GTPase Ras fused with a photoresponsive protein	5
Targeting senescent cells for the treatment of age-associated diseases	5
Structural insight into the recognition of the linear ubiquitin assembly complex by Shigella E3 ligase IpaH1.4/2.5	5
Merlin/NF2 regulates SLC7A11/xCT expression and cell viability under glucose deprivation at high cell density in glioblastoma cells	5
Cellular senescence: mechanisms and relevance to cancer and aging	5
Binding profile of quinonoid-dihydrobiopterin to quinonoid-dihydropteridine reductase examined by in silico and in vitro analyses	5
Dissection of an ABC transporter LolCDE function analyzed by photo-crosslinking	5
Spatial heterogeneity and functional zonation of living tissues and organs in situ	5
Chondroitin sulfate glycosaminoglycans function as extra/pericellular ligands for cell surface receptors	5
Structural basis for molecular interactions on the eukaryotic DNA sliding clamps PCNA and RAD9-RAD1-HUS1	5
A lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	5
Cannabidiolic acid causes a defect in tail retraction of migrating MDA-MB-231 cells: Possible involvements of Rho-associated protein kinases (ROCKs) inhibition and accumulation of vinculin at the rear	5
Recent topics regarding macrophage in the central nervous system	5
Maintenance of the Golgi ribbon structure by the KASH protein Jaw1	5
Supplementation of essential amino acids suppresses age-associated sleep loss and sleep fragmentation but not loss of rhythm strength under yeast-restricted malnutrition in Drosophila	5
Ubiquitin-mediated mitochondrial regulation by MITOL/MARCHF5 at a glance	5
The cofactors and domains of a staphylococcal capsule-producing enzyme preserve its structure, stability, shape and dimerization ability	5
Polysulfides at the core of bacterial sulfur metabolism	5
The role of cellular senescence in wound healing of diabetic skin	5
Ciliary length variations impact cilia-mediated signaling and biological responses	4
Response to acute hyperglycemia and high fructose in cultured tenocytes	4
Cryo-electron microscopy reveals the impact of the nucleosome dynamics on transcription activity	4
Essential dextrin structure as donor substrate for 4-α-glucanotransferase in glycogen debranching enzyme	4
Thermostability optimization of the aspartate/alanine exchange transporter from Tetragenococcus halophilus	4
Commentary for the incorporation of extracellular vesicle markers varies among vesicles with distinct surface charges	4
Senso-immunology: the past, present, and future	4
Inhibition of Sirt2 Decreases ApoE Secretion in Astrocytes and Microglial Cells	4
Mechanistic study on the peripheral cannabinoid-1 receptor blockers based on the tricyclic scaffolds	4
JB: A cradle for young Japanese biochemists	4
Hydrogen bonds connecting the N-terminal region and the DE loop stabilize the monomeric structure of transthyretin	4
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of the bulged residues	4
Encoding and decoding ubiquitin chain architectures: fine-tuning the fate of proteins	4
Corrigendum to: Escherichia coli amino acid auxotrophic expression host strains for investigating protein structure-function relationships	4
Photocontrol of the small GTPase Ras using its regulatory factor, GTPase-activating protein, modified with photochromic nanodevices	4
Identification of two critical amino acid residues in short-chain aldehyde-responsive odorant receptors	4
Expression of Concern: Circ_0000190 sponges miR-382-5p to suppress cell proliferation and motility and promote cell death by targeting ZNRF3 in gastric cancer	4
Analysis of thermostability for seven Phe to Ala and six Pro to Gly mutants in the Fab constant region of adalimumab	4
UNC5B is an isoform-dependent target for ectodomain shedding	4
Formation of the NLRP3 inflammasome inhibits stress granule assembly by multiple mechanisms	4
The molecular mechanisms of mammalian sperm maturation regulated by NELL2-ROS1 lumicrine signaling	4
Ferroptosis model system by the re-expression of BACH1	3
The tumor promoter 12-O-tetradecanoylphorbol-13-acetate suppresses cell proliferation in metastatic melanoma through TC-PTP/PTPN2 and SH-PTP2/PTPN11	3
NMR analysis of interaction between RNA structure elements and small molecules	3
In situ digestion of alcohol-fixed cells for quantitative proteomics	3
Cytoplasmic zoning by protein phase transition after membrane permeabilization	3
Mtc6/Ehg2 is a novel endoplasmic reticulum-resident glycoprotein essential for high-pressure tolerance	3
Maintaining a neutral range disperses myosin molecules under salt-free conditions	3
Identification of a novel Eps 15 homology domain-containing protein 1 (EHD1) and EHD4-binding motif in phostensin	3
Comprehensive analysis of non-selective and selective autophagy in yeast atg mutants and characterization of autophagic activity in the absence of the Atg8 conjugation system	3
Adipose tissue thermogenesis by calcium futile cycling	3
Identification of APBB1 as a substrate for anaplastic lymphoma kinase	3
Repeat-associated non-AUG translation in neuromuscular diseases: mechanisms and therapeutic insights	3
Comprehensive characterization of the interaction between prototypical drug-site markers and multiple sites on human serum albumin by microbore frontal gel chromatography	3
The 2025 JB Reviewer Award	3
The 2023 JB Reviewer Award	3
New insights into the regulation and roles of phosphatidylinositol 3,4-bisphosphate	3
Towards the in vivo identification of protein–protein interactions	3
Neural stem cell-specific deficiency of (pro)renin receptor causes brain malformation and perinatal lethality in mice	3
A novel O-GlcNAcylation at threonine 71 of histone H4 is a component of heterochromatin	3
Reactive oxygen species are associated with the inhibitory effect of N-(4-hydroxyphenyl)-retinamide on the entry of the severe acute respiratory syndrome-coronavirus 2	3
The 2024 JB Reviewer Award	3
Reform of Journal of Biochemistry	3
Comparative Analysis of Site-Specific N-glycosylation of LAMP1 from Breast Cancer Tissues	3
Editorial	3
Commentary on ‘Structural insights into a bacterial β-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: towards the understanding of the aglycone recognition mechanism by t	3
Supercomplex formation of mitochondrial respiratory chain complexes in leukocytes from patients with neurodegenerative diseases	3
Distribution and evolution of the serine/aspartate racemase family in invertebrates. II. Frequent and widespread parallel evolution of aspartate racemase	3

Commentary on: direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors	3
Proofreading of protein localization mediated by a mitochondrial AAA-ATPase Msp1	3
Three glutamic acid residues in the cytoplasmic N-terminal tail of long-form GlcAT-P define Golgi-to-ER trafficking	3
Two-sided function of osteopontin during osteoblast differentiation	3
Screening of α-amino acid ester acyl transferase variant with improved activity by combining rational and random mutagenesis	3
Degradation of glycosylinositol phosphoceramide during plant tissue homogenization	3
Amino acid residues responsible for the different pH dependency of cell-specific ferredoxins in the electron transfer reaction with ferredoxin-NADP+ reductase from maize leaves	3
Inter-domain interaction of ferredoxin-NADP+ reductase important for the negative cooperativity by ferredoxin and NADP(H)	3
Multi-dimensional condensation of intracellular biomolecules	3
Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography	3
Mechanisms of mitochondrial reorganization	3
Molecular structure and function of mysterin/RNF213	3
The HP1 hinge region: more than just a linker for heterochromatin	3
TT-pocket/HIRAN: binding to 3′-terminus of DNA for recognition and processing of stalled replication forks	3
Lysine Acetyltransferases (KATs) in Disguise: Diseases Implications	2
Real-time monitoring of polyacrylamide gel electrophoresis by the shadowgraph technique	2
The JB Award	2
Evaluation of the cyclic single-chain Fv antibody derived from nivolumab by biophysical analyses and in vitro cell-based bioassay	2
Distribution and role of d-glutamate, a novel d-amino acid identified in animals, in the reproductive tissues of male kuruma prawn Marsupenaeus japonicus	2
Msp1-mediated proofreading mechanism for localization of tail-anchored membrane proteins	2
Cell assays in microcompartments driven by droplet microfluidics and hydrogel technologies	2
Inhibition of human glutathione transferase by catechin and gossypol: comparative structural analysis by kinetic properties, molecular docking and their efficacy on the viability of human MCF-7 cells	2
A kinase inhibitor screen identifies GSK690693 as a Hippo pathway inhibitor targeting ER-positive breast cancer	2
Valosin-containing protein mediates DNA-dependent protein kinase activation in response to DNA topoisomerase II-associated DNA double-strand breaks	2
The SH3 binding site in front of the WH1 domain contributes to the membrane binding of the BAR domain protein endophilin A2	2
An Assay Method for Characterizing Bacteriophage T7 RNA Polymerase Activity by Transcription–Translation (TX-TL) System	2
Characterization of p16-positive stromal cells in age-related cardiac disorders	2
Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	2
Translating the green code: Ribo-Seq for photosynthetic eukaryotes in focus	2
New insights into the essentiality of core autophagy factors revealed by comprehensive analysis	2
Efficient DNA/RNA extraction from tarsal plates by SK mill, a freeze-crush apparatus	2
Exploring protein lipidation by mass spectrometry-based proteomics	2
Nicotinamide-N-methyltransferase regulates lipid metabolism via SAM and 1-methylnicotinamide in the AML12 hepatocyte cell line	2
Non-triple helical form of type IV collagen alpha1 chain suppresses vascular endothelial-cadherin mediated cell-to-cell junctions	2
Novel small synthetic HIV-1 V3 crown variants: CCR5 targeting ligands	2
2-Oxoglutarate-dependent dioxygenases as oxygen sensors: their importance in health and disease	2
Availability of aldo-keto reductase 1C3 and ATP-binding cassette B1 as therapeutic targets for alleviating paclitaxel resistance in breast cancer MCF7 cells	2
Interaction of FlhF, SRP-like GTPase with FliF, MS ring component assembling the initial structure of flagella in marine Vibrio	2
Crystal structure of the sliding DNA clamp from the Gram-positive anaerobic bacterium Clostridioides difficile	2
Thermodynamic stability of human lipocalin-type prostaglandin D synthase under various pH conditions	2
Reflection	2
Differential regulation between photosynthetic type and non-photosynthetic type Fd:FNRs in the negative cooperativity and pH dependency of the electron transfer activity	2
The Nuclear Cap-Binding Complex, a multitasking binding partner of RNA polymerase II transcripts	2
Cancer-associated SF3B1 mutations inhibit mRNA nuclear export by disrupting SF3B1–THOC5 interactions	2
Rethinking c-Fos for understanding drug action in the brain	2
Thanking All Peer Reviewers	2
Inhibitory machinery for the functional dystroglycan glycosylation	2
Ubiquitin signaling in PINK1/Parkin-dependent mitophagy	2
Crystal structure of Klebsiella pneumoniae maltohexaose-producing α-amylase	2
Hyperosmotic stress response regulates interstitial homeostasis and pathogenic inflammation	2
Insights into the regulation of mitochondrial functions by protein kinase A-mediated phosphorylation	2
Cell type- and neuronal differentiation-dependent MME 5′UTR splice variants with distinct translational outputs in human cells	2
Cytotoxic stress caused by azalamellarin D (AzaD) interferes with cellular protein translation by targeting the nutrient-sensing kinase mTOR	2
C-terminal truncation is a prominent post-translational modification of human erythrocyte α-synuclein	2
β-1,4-Galactan suppresses lipid synthesis in sebaceous gland cells via TLR4	2
Carbohydrate-binding ability of a recombinant protein containing the DM9 motif from Drosophila melanogaster	2
Interaction mapping between nucleoporins in the fission yeast Schizosaccharomyces pombe using mass-spectrometry	2
Cancer-associated mutations in SF3B1 disrupt the interaction between SF3B1 and DDX42	2