Journal of Biochemistry

Article	Citations
ZNRF1-dependent regulation of AKT activity modulates Nav subcellular localization and AIS position in neurons to regulate fear-related behaviour	35
Production and characterization of an Fv-clasp of rheumatoid factor, a low-affinity human autoantibody	25
Variations associated with neurodevelopmental disorders affect ARF1 function and cortical development	25
RMST: a long noncoding RNA involved in cancer and disease	25
Microglia regulate neuronal and behavioural functions under physiological and pathological conditions	24
BACH to the ferroptosis	23
FRET-based biosensor moxCRONOS enables quantitative monitoring of macromolecular crowding in organelles and protein aggregates	22
CdbC: a disulfide bond isomerase involved in the refolding of mycoloyltransferases in Corynebacterium glutamicum cells exposed to oxidative conditions	22
Cellular senescence in the cancer microenvironment	21
Transcriptomic characterization of Lonrf1 at the single-cell level under pathophysiological conditions	20
The action of coenzyme B12-dependent diol dehydratase on 3,3,3-trifluoro-1,2-propanediol results in elimination of all the fluorides with formation of acetaldehyde	19
Putrescine Biosynthesis from Agmatine by Arginase (TtARG) in Thermus thermophilus	19
Land-breaking publications and the impact of these publications in several research areas: commentary for the 100th anniversary of Journal of Biochemistry	17
Phosphorylation/dephosphorylation of PTP-PEST at Serine 39 is crucial for cell migration	17
The Journal of Biochemistry: 100 years of excellence in scientific publishing	17
Formation of hierarchical assemblies by collagen peptides derived from fish skin and bladder and their subsequent application as antiperoxide agents in lipid-rich food	16
SdrR, a LysR-type regulator, responds to the mycobacterial antioxidant defense	16
Calpain-3 not only proteolyzes calpain-1 and -2 but also is a substrate for calpain-1 and -2	16
A refined method for high-purity isolation of uterine glandular epithelial cells in mouse	16
SSB promotes DnaB helicase passage through DnaA complexes at the replication origin oriC for bidirectional replication	16
Intracellular biliverdin dynamics during ferroptosis	15
Phospholipase A and acyltransferases as novel regulator of organelle dynamics	15
Perturbed collagen metabolism underlies lymphatic recanalization failure in Gata2 heterozygous deficient mice	15
Direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors	15
PLAAT1 expression triggers fragmentation of mitochondria in an enzyme activity-dependent manner	15

Suicide substrate reaction-like modification of mouse serine racemase with L-serine	14
The potential of erythrocyte α-synuclein to differentiate dementia with Lewy bodies from Parkinson’s and Alzheimer’s diseases	13
Collagen isolated from human adipose tissue and its cellular affinity	13
Thanking all peer reviewers	12
Identification of unannotated coding sequences and their physiological functions	12
Observation of redistribution for local conformational dynamics in cross-reactive antibody design	12
Method for isolation and quantification of inositol glycan produced by glycosylinositol phosphoceramide-hydrolysing phospholipase D in plants	12
The crystal structure of the small zinc-finger protein ZifS from Thermus thermophilus HB8	12
Onnamide A suppresses the severe acute respiratory syndrome-coronavirus 2 infection without inhibiting 3-chymotrypsin-like cysteine protease	12
A stress granule-associated RNA-binding protein FAM120A drives cisplatin resistance in non-small cell lung cancer	12
Acquisition mechanism of heme oxygenase-1 induction by heat shock in human monocytic cell line THP-1 after differentiation to macrophage-like cells	12
Neutral selection and clonal expansion during the development of colon cancer metastasis	11
Sensitive immunoassay ofLegionellausing multivalent conjugates of engineered VHHs	11
Cytoplasmic zoning in membrane blebs	11
A two-tiered epigenetic mechanism ensures imprint stability after fertilization: insights from the Igf2/H19 locus	11
Exploring the roles of Lem2 and Bqt4 in lipid metabolism for nuclear envelope maintenance: a novel perspective	11
Chondroitin sulfate liposome: clustering toward high functional efficiency	11
DDX5: a versatile RNA helicase in cancer and cell fate determination—linking c-Myc and JAK2 V617F signalling to emerging therapeutics	11
Mitochondria-targeting siRNA screening identifies mitochondrial calcium uniporter as a factor involved in nucleoid morphology	11
CRABP2 promotes cell migration and invasion by activating PI3K/AKT and MAPK signalling pathways via upregulating LAMB3 in prostate cancer	11
Correction to: The Hox-based positional memory in muscle stem cells	11
Correction to: Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	10
Commentary for: a lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	10
The 2024 JB Award	10
CDC42 missense mutations and human diseases: from neurodevelopmental disorders to autoinflammation	10
Comprehensive identification of proteins interacting with long non-coding RNA TUG1 in R-loop regulation	10
Characterization of recombinant photoconverting green fluorescent Akanes	10
Endothelial RhoA is essential for embryonic and postnatal vascular development by regulating KLF2–Notch1 signaling	10
Phosphatidylinositol-specific phospholipase C across biological kingdoms: domain organization, functions and regulation	8
Histone H2B isoform H2bc27 is expressed in the developing brain of mouse embryos	8
Notch signaling pathway induces expression of type IV collagen in angiogenesis	8
Coiled-coils as emerging drivers of liquid–liquid phase separation	8
Comparative glycomic analysis of Mimiviridae and Marseilleviridae uncovers host-related and lineage-specif	8
Molecular mechanisms of mechanosensing and plasticity of tendons and ligaments	8
Mitochondria–giant lipid droplet proximity and autophagy suppression in nitrogen-depleted oleaginous yeast Lipomyces starkeyi cells	8
Profiling translation in the nervous system	8
Bisecting GlcNAc modification of angiotensin-related glycoproteins in mouse kidney	8
Trehalose decreases mRNA and protein expressions of c-Jun and JunB in human cervical cancer HeLa cells	8
Inner nuclear membrane proteins Lem2 and Bqt4 interact with different lipid synthesis enzymes in fission yeast	7
Oligomeric state of the aspartate:alanine transporter from Tetragenococcus halophilus	7
Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside	7
Post-translational modification of lysine residues in erythrocyte α-synuclein	7
Biochemical characterization and mutational analysis of lysophosphatidic acid acyltransferases of Escherichia coli highlighting their involvement in the generation of membrane phospholipid dive	7
Effective plasmid delivery to a plasmid-free Bacillus natto strain by a conjugational transfer system	7
Inhibition of autophagy by Atg7 knockdown enhances chemosensitivity in gemcitabine/paclitaxel-resistant pancreatic cancer MIAPaCa2 cells	7
Analysis of ribonucleotide content in the genomic DNA of ribonuclease H2 A subunit (RH2A)-knockout NIH3T3 cells after transient expression of wild-type RH2A or RH2A variants with an Aicardi–Goutières	7
Structure of chloramphenicol-bound MexB reveals residues in the distal binding pocket that are critical for substrate recognition	7
Improving purity and apparent thermal stability of single-chain Fv antibodies by heat treatment in a soluble E. coli cytoplasmic expression system	7
Thanking All Peer Reviewers	6
Innate immune signalling in the adipocyte	6

A novel target for the insulin signaling pathway in glucose-mediated growth regulation	6
Regulatory dynamics of monosomes and polysomes in cellular adaptation	6
Corrigendum to: BaeR participates in cephalosporins susceptibility by regulating the expression level of outer membrane proteins in Escherichia coli	6
Correction to: Innate immune signals triggered on organelle membranes	6
Development of supercooling preservation method of adherent cultured human cells	6
Merlin/NF2 regulates SLC7A11/xCT expression and cell viability under glucose deprivation at high cell density in glioblastoma cells	6
Biochemical characterization of medaka (Oryzias latipes) fibrinogen gamma and its gene disruption resulting in anemia as a model fish	6
Morphinan Evolution: The Impact of Advances in Biochemistry and Molecular Biology	6
Phosphorylated SARM1 is involved in the pathological process of rotenone-induced neurodegeneration	6
Novel synthetic biological study on intracellular distribution of human GlcNAc-1-phosphotransferase expressed in insect cells	6
The insulin/IGF receptor puzzle in pancreatic β-cell recovery: a missing link for diabetes therapy?	6
Cellular senescence: mechanisms and relevance to cancer and aging	5
Recent topics regarding macrophage in the central nervous system	5
The NRF2 inducer CDDO-2P-Im provokes a reduction in amyloid β levels in Alzheimer’s disease model mice	5
Binding profile of quinonoid-dihydrobiopterin to quinonoid-dihydropteridine reductase examined by in silico and in vitro analyses	5
Identification of two critical amino acid residues in short-chain aldehyde-responsive odorant receptors	5
Targeting senescent cells for the treatment of age-associated diseases	5
Structural basis for molecular interactions on the eukaryotic DNA sliding clamps PCNA and RAD9-RAD1-HUS1	5
Structural insight into the recognition of the linear ubiquitin assembly complex by Shigella E3 ligase IpaH1.4/2.5	5
Ubiquitin-mediated mitochondrial regulation by MITOL/MARCHF5 at a glance	5
Supplementation of essential amino acids suppresses age-associated sleep loss and sleep fragmentation but not loss of rhythm strength under yeast-restricted malnutrition in Drosophila	5
The role of cellular senescence in wound healing of diabetic skin	5
Protein homeostasis and degradation in quiescent neural stem cells	5
Photocontrol of small GTPase Ras fused with a photoresponsive protein	5
Cryo-electron microscopy reveals the impact of the nucleosome dynamics on transcription activity	5
Mechanistic study on the peripheral cannabinoid-1 receptor blockers based on the tricyclic scaffolds	5
Chondroitin sulfate glycosaminoglycans function as extra/pericellular ligands for cell surface receptors	5
Maintenance of the Golgi ribbon structure by the KASH protein Jaw1	5
Polysulfides at the core of bacterial sulfur metabolism	5
Spatial heterogeneity and functional zonation of living tissues and organs in situ	5
Dissection of an ABC transporter LolCDE function analyzed by photo-crosslinking	5
The cofactors and domains of a staphylococcal capsule-producing enzyme preserve its structure, stability, shape and dimerization ability	5
JB: A cradle for young Japanese biochemists	5
A lipid scramblase TMEM41B is involved in the processing and transport of GPI-anchored proteins	5
A novel O-GlcNAcylation at threonine 71 of histone H4 is a component of heterochromatin	4
Commentary for the incorporation of extracellular vesicle markers varies among vesicles with distinct surface charges	4
The molecular mechanisms of mammalian sperm maturation regulated by NELL2-ROS1 lumicrine signaling	4
Inhibition of Sirt2 Decreases ApoE Secretion in Astrocytes and Microglial Cells	4
Expression of Concern: Circ_0000190 sponges miR-382-5p to suppress cell proliferation and motility and promote cell death by targeting ZNRF3 in gastric cancer	4
Encoding and decoding ubiquitin chain architectures: fine-tuning the fate of proteins	4
Senso-immunology: the past, present, and future	4
In situ digestion of alcohol-fixed cells for quantitative proteomics	4
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of the bulged residues	4
Hydrogen bonds connecting the N-terminal region and the DE loop stabilize the monomeric structure of transthyretin	4
Photocontrol of the small GTPase Ras using its regulatory factor, GTPase-activating protein, modified with photochromic nanodevices	4
Analysis of thermostability for seven Phe to Ala and six Pro to Gly mutants in the Fab constant region of adalimumab	4
Formation of the NLRP3 inflammasome inhibits stress granule assembly by multiple mechanisms	4
Corrigendum to: Escherichia coli amino acid auxotrophic expression host strains for investigating protein structure-function relationships	4
Mechanisms of mitochondrial reorganization	4
Thermostability optimization of the aspartate/alanine exchange transporter from Tetragenococcus halophilus	4
Response to acute hyperglycemia and high fructose in cultured tenocytes	4
Essential dextrin structure as donor substrate for 4-α-glucanotransferase in glycogen debranching enzyme	4
UNC5B is an isoform-dependent target for ectodomain shedding	4
Ciliary length variations impact cilia-mediated signaling and biological responses	4
Open and closed structures of L-arginine oxidase by cryo-electron microscopy and X-ray crystallography	3
Adipose tissue thermogenesis by calcium futile cycling	3
Repeat-associated non-AUG translation in neuromuscular diseases: mechanisms and therapeutic insights	3
Identification of APBB1 as a substrate for anaplastic lymphoma kinase	3
Editorial	3
Amino acid residues responsible for the different pH dependency of cell-specific ferredoxins in the electron transfer reaction with ferredoxin-NADP+ reductase from maize leaves	3
The 2025 JB Reviewer Award	3
Ferroptosis model system by the re-expression of BACH1	3
Comprehensive analysis of non-selective and selective autophagy in yeast atg mutants and characterization of autophagic activity in the absence of the Atg8 conjugation system	3
2,2,6,6-Tetramethylpiperidine-1-oxyl acts as a volatile inhibitor of ferroptosis and neurological injury	3
Cytoplasmic zoning by protein phase transition after membrane permeabilization	3
Neural stem cell-specific deficiency of (pro)renin receptor causes brain malformation and perinatal lethality in mice	3
Two-sided function of osteopontin during osteoblast differentiation	3
Maintaining a neutral range disperses myosin molecules under salt-free conditions	3
Comparative Analysis of Site-Specific N-glycosylation of LAMP1 from Breast Cancer Tissues	3
Supercomplex formation of mitochondrial respiratory chain complexes in leukocytes from patients with neurodegenerative diseases	3
Polyamines produced by an extreme thermophile are essential for cell growth at high temperature	3
Commentary on ‘Structural insights into a bacterial β-glucosidase capable of degrading sesaminol triglucoside to produce sesaminol: towards the understanding of the aglycone recognition mechanism by t	3
TT-pocket/HIRAN: binding to 3′-terminus of DNA for recognition and processing of stalled replication forks	3
Distribution and evolution of the serine/aspartate racemase family in invertebrates. II. Frequent and widespread parallel evolution of aspartate racemase	3
The tumor promoter 12-O-tetradecanoylphorbol-13-acetate suppresses cell proliferation in metastatic melanoma through TC-PTP/PTPN2 and SH-PTP2/PTPN11	3
Comprehensive characterization of the interaction between prototypical drug-site markers and multiple sites on human serum albumin by microbore frontal gel chromatography	3
Mtc6/Ehg2 is a novel endoplasmic reticulum-resident glycoprotein essential for high-pressure tolerance	3
NMR analysis of interaction between RNA structure elements and small molecules	3
Degradation of glycosylinositol phosphoceramide during plant tissue homogenization	3
Reactive oxygen species are associated with the inhibitory effect of N-(4-hydroxyphenyl)-retinamide on the entry of the severe acute respiratory syndrome-coronavirus 2	3

Reform of Journal of Biochemistry	3
The 2024 JB Reviewer Award	3
Multi-dimensional condensation of intracellular biomolecules	3
Molecular structure and function of mysterin/RNF213	3
The 2023 JB Reviewer Award	3
New insights into the regulation and roles of phosphatidylinositol 3,4-bisphosphate	3
The HP1 hinge region: more than just a linker for heterochromatin	3
Three glutamic acid residues in the cytoplasmic N-terminal tail of long-form GlcAT-P define Golgi-to-ER trafficking	3
Towards the in vivo identification of protein–protein interactions	3
Decreased EMILIN2 correlates to metabolism phenotype and poor prognosis of ovarian cancer	3
Screening of α-amino acid ester acyl transferase variant with improved activity by combining rational and random mutagenesis	3
Proofreading of protein localization mediated by a mitochondrial AAA-ATPase Msp1	3
Commentary on: direct binding of calmodulin to the cytosolic C-terminal regions of sweet/umami taste receptors	3
Differential regulation between photosynthetic type and non-photosynthetic type Fd:FNRs in the negative cooperativity and pH dependency of the electron transfer activity	2
Lysine Acetyltransferases (KATs) in Disguise: Diseases Implications	2
Cell type- and neuronal differentiation-dependent MME 5′UTR splice variants with distinct translational outputs in human cells	2
New insights into the essentiality of core autophagy factors revealed by comprehensive analysis	2
Crystal structure of Klebsiella pneumoniae maltohexaose-producing α-amylase	2
Efficient DNA/RNA extraction from tarsal plates by SK mill, a freeze-crush apparatus	2
Thanking All Peer Reviewers	2
Nicotinamide-N-methyltransferase regulates lipid metabolism via SAM and 1-methylnicotinamide in the AML12 hepatocyte cell line	2
The Nuclear Cap-Binding Complex, a multitasking binding partner of RNA polymerase II transcripts	2
Real-time monitoring of polyacrylamide gel electrophoresis by the shadowgraph technique	2
β-1,4-Galactan suppresses lipid synthesis in sebaceous gland cells via TLR4	2
Crystal structure of the sliding DNA clamp from the Gram-positive anaerobic bacterium Clostridioides difficile	2
Interaction of FlhF, SRP-like GTPase with FliF, MS ring component assembling the initial structure of flagella in marine Vibrio	2
Distribution and role of d-glutamate, a novel d-amino acid identified in animals, in the reproductive tissues of male kuruma prawn Marsupenaeus japonicus	2
Msp1-mediated proofreading mechanism for localization of tail-anchored membrane proteins	2
Translating the green code: Ribo-Seq for photosynthetic eukaryotes in focus	2
Availability of aldo-keto reductase 1C3 and ATP-binding cassette B1 as therapeutic targets for alleviating paclitaxel resistance in breast cancer MCF7 cells	2
Valosin-containing protein mediates DNA-dependent protein kinase activation in response to DNA topoisomerase II-associated DNA double-strand breaks	2
The SH3 binding site in front of the WH1 domain contributes to the membrane binding of the BAR domain protein endophilin A2	2
Ubiquitin signaling in PINK1/Parkin-dependent mitophagy	2
Exploring protein lipidation by mass spectrometry-based proteomics	2
Inter-domain interaction of ferredoxin-NADP+ reductase important for the negative cooperativity by ferredoxin and NADP(H)	2
Inhibitory machinery for the functional dystroglycan glycosylation	2
2-Oxoglutarate-dependent dioxygenases as oxygen sensors: their importance in health and disease	2
A kinase inhibitor screen identifies GSK690693 as a Hippo pathway inhibitor targeting ER-positive breast cancer	2
Reflection	2
C-terminal truncation is a prominent post-translational modification of human erythrocyte α-synuclein	2
Characterization of p16-positive stromal cells in age-related cardiac disorders	2
Cancer-associated SF3B1 mutations inhibit mRNA nuclear export by disrupting SF3B1–THOC5 interactions	2
Cancer-associated mutations in SF3B1 disrupt the interaction between SF3B1 and DDX42	2
Inhibition of human glutathione transferase by catechin and gossypol: comparative structural analysis by kinetic properties, molecular docking and their efficacy on the viability of human MCF-7 cells	2
Rethinking c-Fos for understanding drug action in the brain	2
Non-triple helical form of type IV collagen alpha1 chain suppresses vascular endothelial-cadherin mediated cell-to-cell junctions	2
The JB Award	2
Evaluation of the cyclic single-chain Fv antibody derived from nivolumab by biophysical analyses and in vitro cell-based bioassay	2
Identification of a novel Eps 15 homology domain-containing protein 1 (EHD1) and EHD4-binding motif in phostensin	2
Carbohydrate-binding ability of a recombinant protein containing the DM9 motif from Drosophila melanogaster	2
Thermodynamic stability of human lipocalin-type prostaglandin D synthase under various pH conditions	2
Insights into the regulation of mitochondrial functions by protein kinase A-mediated phosphorylation	2
Molecular Mechanism of Autophagy, Cytoplasmic Zoning by Lipid Membranes	2
Escherichia coli tRNA (Gm18) methyltransferase (TrmH) requires the correct localization of its methylation site (G18) in the D-loop for efficient methylation	1
Role of lipoylation in mitochondrial supercomplex formation during C2C12 cell differentiation	1
Cytotoxic stress caused by azalamellarin D (AzaD) interferes with cellular protein translation by targeting the nutrient-sensing kinase mTOR	1
Improvement of a FRET-based redox probe Redoxfluor through circular permutation and effects of substitution of cysteine residues on its redox properties	1
Urinary excretion of nonsulfated HNK-1 glycans is associated with renal dysfunction	1
Mitochondrial DNA: leakage, recognition and associated human diseases	1
Functional analysis of the N-terminal region of Vibrio FlhG, a MinD-type ATPase in flagellar number control	1
Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus	1
Etomoxir suppresses the expression of PPARγ2 and inhibits the thermogenic gene induction of brown adipocytes through pathways other than β-oxidation inhibition	1
Trans-scale thermal signaling in biological systems	1
Characterization of KDM5 lysine demethylase family substrate preference and identification of novel substrates	1
Interaction mapping between nucleoporins in the fission yeast Schizosaccharomyces pombe using mass-spectrometry	1
The E-Id axis specifies adaptive and innate lymphoid lineage cell fates	1
Hyperosmotic stress response regulates interstitial homeostasis and pathogenic inflammation	1
Age-related alterations in protein phosphatase 2A methylation levels in brains of cynomolgus monkeys: a pilot study	1
Identification of effective CCR2 inhibitors for cancer therapy using humanized mice	1
Fond Memories of Professor Sen-itiroh Hakomori	1
Correction to: A novel peptide isolated from Catla skin collagen acts as a self-assembling scaffold promoting nucleation of calcium-deficient hydroxyapatite nanocrystals	1
Evolutionary implications from lipids in membrane bilayers and photosynthetic complexes in cyanobacteria and chloroplasts	1
A crucial stem cell plasticity regulation pathway: identification of key elements using the NCCIT human embryonic carcinoma cell line	1
Shaping transverse-tubules: central mechanisms that play a role in the cytosol zoning for muscle contraction	1
Chimeric Fab incorporating the IgM Cμ1 domain: insights into physicochemical properties	1
Endogenous reductase activities for the generation of ribitol-phosphate, a CDP-ribitol precursor, in mammals	1
Commentary on ‘the ATPase activity of ABCA1 is increased by cholesterol in the presence of anionic lipids’	1
Acetylation of MLH1 by CBP increases cellular DNA mismatch repair activity	1
Novel small synthetic HIV-1 V3 crown variants: CCR5 targeting ligands	1
Acute exposure of minimally oxLDL elicits survival responses by downregulating the mediators of NLRP3 inflammasome in cultured RAW 264.7 macrophages	1
Transglutaminase mediates the hardening of fish egg envelope produced by duplication of factor XIIIA gene during the evolution of Teleostei	1
Cell assays in microcompartments driven by droplet microfluidics and hydrogel technologies	1
Dynamics of CDKL5 phosphorylation and its regulatory mechanisms in cultured cells	1
Structural insights into the substrate specificity of IMP-6 and IMP-1 metallo-β-lactamases	1
The 2023 JB Award	1
PPARα activation partially drives NAFLD development in liver-specific Hnf4a-null mice	1
Curcumin analog GO-Y030 inhibits tumor metastasis and glycolysis	1
Commentary on: γ-enolase (ENO2) is methylated at the Nτ position of His-190 among enolase isozymes	1
Production of non-triple-helical collagen polypeptides under hypoxia and the implication for tumour	1
Phosphatidylinositol 3,4-bisphosphate Emerges as a Lipid Mediator Linking Oxidative Stress to DNA Damage	1
Characterization of Staphylococcus aureus RecX protein: Molecular insights into negative regulation of RecA protein and implications in HR processes	1
The 2025 JB Award	1
Proline-rich transmembrane protein 2 knock-in mice present dopamine-dependent motor deficits	1
An Assay Method for Characterizing Bacteriophage T7 RNA Polymerase Activity by Transcription–Translation (TX-TL) System	1
Mechanisms that regulate the production of secondary siRNAs in plants	1