OOIR: Observatory of International Research

Papers

(The TQCC of Folia Microbiologica is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2022-08-01 to 2026-08-01.)

Article	Citations
The development of an acetic acid–degrading microbial strain that tolerates 4-chloro-2-methylphenoxyacetic acid and 2,4-dichlorophenoxyacetic acid	51
Gut microbiota composition in recurrent acute otitis media: a cross-sectional observational study	50
Probiotic characteristics and safety evaluation of acid-tolerant lactic acid bacteria isolated from Suancai, a popular fermented vegetable in Northeast China	43
Fine-scale mapping of the microbiome on phylloplane and spermoplane of aromatic and non-aromatic rice genotypes	38
Transcriptional modulation of Porphyromonas gingivalis biofilms on titanium-copper implant surfaces	33
Gut microbiota in relationship to diabetes mellitus and its late complications with a focus on diabetic foot syndrome: A review	26
Designing the macrolide-amygdalin complexes as CDK6 inhibitors: A multi-algorithm approach to develop safe and effective drugs through molecular docking, ADMET, molecular dynamic simulation and DFT st	25
Pomegranate peel extract as a promising tyrosyl-tRNA synthetase inhibitor of Staphylococcus aureus: in vitro and in silico approach	24
Macronutrients-availing microbiomes: biodiversity, mechanisms, and biotechnological applications for agricultural sustainability	23
The effect of monomers number in peptides on Escherichia coli strain productivity and inclusion bodies-associated target protein accumulation	23
Genome sequence and comparative analysis of fungal antagonistic strain Bacillus velezensis LJBV19	22
Expanding the functional landscape of microbial entomopathogens in agriculture beyond pest management	22
Rhizobacterial community and growth-promotion trait characteristics of Zea mays L. inoculated with Pseudomonas fluorescens UM270 in three different soils	21
The antimicrobial potential of Fomitopsis Pinicola across multiple applications	20
Passive immunization through polyclonal antibodies against IsdE showed protective activity in an experimental S.aureus challenge model	20
Detection and identification of pathogens using agents targeting the bacterial cell wall	19
A rare case report of tissue infection caused by Pantoea piersonii (basionym Kalamiella piersonii)	19
Infection control and wound care innovations in plastic surgery: a multidisciplinary approach	19
Emerging contaminants in healthcare effluents: antibiotic resistance and virulence factor dissemination	18
Use of pus metagenomic next-generation sequencing for efficient identification of pathogens in patients with sepsis	18
Production of bioactive spirodioxynaphthalenes from Hermatomyces reticulatus (Pleosporales)	18
Mechanistic insights and emerging applications of human metapneumovirus (HMPV) treatment: From molecular design to translational immunity	18
Isolation, characterization, and proof of concept evaluation of serially adapted bacteriophages against multidrug-resistant Escherichia coli	17
Pseudomonas spp. and antimicrobial resistance: unlocking new horizons with 1-hydroxyphenazine	17
Anticancer compounds from Streptomyces: insights from metagenomics and mechanistic perspective	17

Alteration of the intestinal microbiota associated with the development of nonalcoholic steatohepatitis and sarcopenia in SHRSP5/Dmcr	17
Exploring halophilic microorganisms for novel antimicrobial discovery: molecular mechanisms and computational approaches	17
Effects of Bacillus in Pectobacterium quorum quenching: A survey of two different acyl-homoserine lactonases	16
A finding of potential coexisting bacteria and characterization of the bacterial communities in the fruiting body of Sarcodon aspratus	16
The secrets of environmental Pseudomonas aeruginosa in slaughterhouses: Antibiogram profile, virulence, and antibiotic resistance genes	16
D-amino acids inhibit biofilm formation in Escherichia coli and increase antibiotic susceptibility in multidrug-resistant bacteria	16
Deletion of the cheZ gene results in the loss of swimming ability and the decrease of adhesion ability to Caco-2 cells in Escherichia coli Nissle 1917	16
Marine-derived Aspergillus sp.-mediated biosynthesis of silver nanoparticles with antioxidant activity and immunomodulatory apoptosis induction in melanoma cells	16
A comprehensive review on antifungal compounds and biogenic nanoparticles from marine actinobacteria against opportunistic fungal infections	16
Anti-inflammatory effects of extracellular vesicles and cell-free supernatant derived from Lactobacillus crispatus strain RIGLD-1 on Helicobacter pylori-induced inflammatory response in gastric epithe	15
Genomic and functional insights into Alcaligenes pakistanensis subsp. lycopodii subsp. nov. -deciphering crosstalk with Lycopodium clavatum L. for bioinoculant potential	15
Biogenic synthesis of ZnO based nanobiotics using the extract of an endophytic bacteria Paenibacillus sp. strain IHC2 and evaluation of antibacterial and anti-nematicidal activities	15
Actinobacillus seminis DnaK interacts with bovine transferrin, lactoferrin, and hemoglobin as a putative iron acquisition mechanism	15
Virtual screening and molecular dynamics analysis of Plasmodium falciparum dihydroorotate dehydrogenase (DHODH) inhibitors targeting pyrimidine biosynthesis pathway	14
Navigating bacterial motility through chemotaxis: from molecular mechanisms to physiological perspectives	14
Phage therapy and its role in cancer treatment and control	14
Early and on-site detection of Ganoderma-induced basal stem rot in oil palm: using recombinase polymerase amplification–lateral flow assay	14
Phosphonium chloride–based deep eutectic solvents inhibit pathogenic Acanthamoeba castellanii belonging to the T4 genotype	14
Insights into the genomic features of the emerging pathogens Cronobacter malonaticus and Cronobacter turicensis	14
Investigation of symbiotic-like interactions between Pseudomonas chlororaphis and non-pathogenic Fusarium sp. for enhanced biopreparation potential	14
The soil-borne fungal pathogen Athelia rolfsii: past, present, and future concern in legumes	14
Characterization of novel lactic acid bacteria from Algerian ecosystems with probiotic potential and antioxidant-antidiabetic properties	13
The two sRNAs OmrA and OmrB indirectly repress transcription from the LEE1 promoter of enteropathogenic Escherichia coli	13
Physalis peruviana and Lactobacillus lysates as modulators of lipid metabolism and oxidative stress: a natural alternative to statin therapy	13
Effect of continuous cropping on bacterial and fungal communities in Glehnia littoralis soil	13
A comparative assessment of microbial biodiesel and its life cycle analysis	13
Investigation of potential ascorbate peroxidase inhibitors for anti-leishmaniasis therapy	13
Biological activity of volatiles produced by the strains of two Pseudomonas and two Serratia species	12
Composition of the colon microbiota in the individuals with inflammatory bowel disease and colon cancer	12
Bacterial diversity, community structure and function in association of potato scabby tubers during storage in northern Thailand	12
Probiotic potential and antioxidant, antidiabetic, and anticancer activities of goat milk-derived lactic acid bacteria	12
Biocontrol potential of fungal endophytes isolated from Thevetia Peruviana (Pers.). K. Schum	12
Exploring the impact of quercetin on the growth and biofilm formation of Leptospira interrogans	11
Correction to: Plant antimicrobials: extraction, characterization and activity against foodborne microorganisms	11
Enhancing okra tolerance to salinity stress: role of PGPR and antioxidant enzymes	11
Biopriming with multifarious sulphur-oxidizing bacteria improve in vitro Vigna radiata L. (mung bean) and Brassica juncea L. (mustard) seed germination	11
Microbial consortium with multifunctional attributes for the plant growth of eggplant (Solanum melongena L.)	11
Functional validation of OsRPM1 as a positive regulator of bacterial blight resistance in rice via virus-induced gene silencing	11
Correction to: Anti-inflammatory and wound healing properties of lactic acid bacteria and its peptides	10
Plasmid-mediated resistance in Neisseria gonorrhoeae clinical strains from South Poland, 2014–2021	10
Gut microbiota and cancer immunotherapy: from dysbiosis to personalized immune checkpoint blockade optimization	10
Harnessing nature’s defenders: unveiling the potential of microbial consortia for plant defense induction against Alternaria blight in cumin	9
Two-component systems in Vibrio species: Regulation of virulence and implications for therapeutic development	9
Bacteria of the genus Asaia contaminating non-alcoholic beverages produce biogenic amines, posing a health risk	9
Screening of endophytic fungi from Cremastra appendiculata and their potential for plant growth promotion and biological control	9
Integrated in vitro and in silico characterization of Dittrichia viscosa methanolic extract: phytochemical profiling, antioxidant, antimicrobial, and anticancer activities	9
Biotechnological potential of Ganoderma species in mycoremediation: a bibliometric analysis	9
Taxonomic and functional inferences of cultivable endophytic fungi in two endemic Cerrado plants: dominance of Diaporthe across contrasting host phenologies	9
Biotechnological production of ectoine: current status and prospects	9
Microbiota-based therapies in oral health and disorders	9

Genomic characterization of high-level efflux pump overexpression in Pseudomonas aeruginosa clones with epidemic potential	8
Construction of Pseudomonas aeruginosa SDK-6 with synthetic lipase gene cassette and optimization of different parameters using response surface methodology for over-expression of recombinant lipase	8
Occurrence of biogenic amines and their correlation with bacterial communities in the Ivorian traditional fermented fish adjuevan during the storage	8
Antimicrobial and antibiofilm activities of Ag/Ag2O-anchored CeO2 nanosphers: reaction mechanism determination	8
Influence of a nanoscale coating on plucking fingers and stainless steel on attachment and detachment of Salmonella Enteritidis, Escherichia coli and Campylobacter jejuni	8
Gnotobiotic mouse models as tools for dissecting the role of the microbiota in allergy: contributions from the laboratory of gnotobiology in Nový Hrádek	8
Isolation and genetic characterization of Staphylococcus aureus from wild animal feces and game meats	8
mRNA vaccines against monkeypox: bridging immunoinformatics, structural vaccinology, and translational advances toward pan-orthopox immunity	8
Microbial exopolysaccharides in environmental remediation: production, mechanisms, and challenges	8
The broad antibacterial activity of a small synthetic receptor for cellular phosphatidylglycerol lipids	8
Biocontrol potential of Botrytis fabiopsis against the weeds of agricultural fields in the Qing-Tibetan Plateau	8
Activated mesenchymal stem cells increase drug susceptibility of methicillin-resistant Staphylococcus aureus and Pseudomonas aeruginosa	7
Upgrading the accumulation of ginsenoside Rd in Panax notoginseng by a novel glycosidase-producing endophytic fungus G11-7	7
Probiotic potential and phytase-producing capacity of yeast isolated from Thai traditional fermentation starter (Look-pang)	7
Correction to: Traditional to technological advancements in Ganoderma detection methods in oil palm	7
β-Glucan in antiviral defense: mechanisms, immune modulation, and therapeutic prospects	7
Phylogenic diversity of bacteria associated with potentially toxic cyanobacteria Microcystis aeruginosa: a synthesis on its bloom dynamics	7
Determination of phytocompounds and their role in inhibition of efflux pump-related resistance in Pseudomonas aeruginosa PA7	7
Molecular mechanisms of cadmium uptake in Amanita muscaria: the role of AmNRAMP1	7
Vancomycin-resistant enterococci in healthcare settings: clonal analysis, resistance profiles, and biofilm formation of strains isolated from hospitalized patients	7
Characterization of plant growth-promoting endophytic fungi from Aegle marmelos Corr. and their role in growth enhancement and yield in rice	7
A comprehensive study on Salmonella enterica serovar Richmond in farmed fish Pangasianodon hypophthalmus: insights into zoonotic potential, virulence and antimicrobial resistance	7
Advances in tools, strategies, and applications of mining of microbial genomes for novel antimicrobials: a comprehensive review	7
Derivatives and intermediates of betulonic and platanic acid as effective antibacterial agents	7
Microbial nanotechnology for agriculture, food, and environmental sustainability: Current status and future perspective	7
Characterization and biological activities of endophytic bacteria from Vernonia anthelmintica flowers	7
Anti-Candida activity and biocompatibility of silver nanoparticles associated with denture glaze: a new approach to the management of denture stomatitis	6
Purification and characterization of catechol 1,2-dioxygenase (EC 1.13.11.1; catechol-oxygen 1,2-oxidoreductase; C12O) using the local isolate of phenol-degrading Pseudomonas putida	6
Isolation, biochemical characterization, and antimicrobial activities of EPS-producing bacterial endophytes from Moringa oleifera	6
Fungicidal efficacy of green-synthesized organosolv lignin-capped silver-based nanoparticles against amphotericin B-resistant Candida tropicalis	6
Protein engineering of invertase for enhancing yeast dough fermentation under high-sucrose conditions	6
Characterization of heavy metal-associated bacteria from petroleum-contaminated soil and their resistogram and antibiogram analysis	6
Synergistic interaction of cuminaldehyde and tobramycin: a potential strategy for the efficient management of biofilm caused by Pseudomonas aeruginosa	6
New insights and perspectives on the virulence of hypervirulent Klebsiella pneumoniae	6
Ethyl methanesulfonate mutagenesis: Advancing bacterial genetics for sustainable agriculture	6
Soil to host environmental determinants fueling horizontal gene transfer and global AMR dissemination	6
Nanomaterial–nucleic acid probe synergy: accelerating rapid pathogen detection and antimicrobial susceptibility testing in bloodstream infections	6
Purification and activity enhancement of extracellular tyrosinase from a protease-silenced zygomycete Amylomyces rouxii strain	6
Unravelling rhizosphere competent plant growth promoting bacteria for mainstreaming finger millet to climate smart agriculture	6
Harnessing the power of abiotic inducers to enhance fungal secondary metabolite production: a review	6
The interplay of microbiome, molecular mechanisms, and fertility -an integrated review	6
Antimicrobial resistance mechanisms in non-tuberculous mycobacteria	6
The phosphate-solubilising fungi in sustainable agriculture: unleashing the potential of fungal biofertilisers for plant growth	6
Cost-effective production and characterization of prodigiosin: a promising candidate for antioxidant, anticancer, antimicrobial and fabric staining applications	6
Applicability of Trichoderma spp. in sustainable agriculture against fungal and nematode phytopathogens: a review	6
Unveiling the microbial diversity of biofilms on titanium surfaces in full-scale water-cooling plants using metagenomics approach	6
Characterization of Archaea membrane lipids in radioactive springs using shotgun lipidomics	5
Pantoea piersonii (basionym kalamiella piersonii) as an emerging pathogen: clinical manifestations, diagnostic challenges, and resistance threats	5
Evaluation of the effects of hybrids of metronidazole and eugenol analogues as inhibitors of the Staphylococcus aureus NorA efflux pump: an in vitro and in silico analysis	5
Anti-biofilm potential of Matricaria chamomilla against tetra species representative gut commensals	5
Effect of LuxS/AI-2-mediated quorum sensing system on bacteriocin production of Lactobacillus plantarum NMD-17	5
Combined application of Vancomycin and Levofloxacin potentiates the antimicrobial activity against MRSA: a response surface methodology-based study	5
Characterization of alkaline protease enzyme produced from marine yeast Candida orthopsilosis AKB-1 and its applications	5
Bacteriophage-based control of Pseudomonas spp.: research trends and biotechnological challenges	5
Anaerobic conditions are a major influence on Candida albicans chlamydospore formation	5
Comparative in vitro activity of furazidin and nitrofurantoin and assessment of resistance mechanisms in Escherichia coli isolates from urinary tract infections	5
Evaluation of the interaction and synergy potential of bedaquiline and clarithromycin in combination with efflux pump inhibitors in clinical isolates of Mycobacterium abscessus complex	5
Diversity and antimicrobial potential of endophytic fungi from Egyptian desert medicinal plants	5
Genetic diversity of iron acquisition systems of Staphylococcus aureus associated with bovine mastitis	5
COVID-19-associated pulmonary aspergillosis (CAPA): identification of Aspergillus species and determination of antifungal susceptibility profiles	5
Targeting virulence of resistant Escherichia coli by the FDA-approved drugs sitagliptin and nitazoxanide as an alternative antimicrobial approach	5
Targeting multidrug-resistant Escherichia coli by two isolated bacteriophages from hospital wastewater	5
Diversity and bioactive potential of Actinomycetia from the rhizosphere soil of Juniperus excelsa	5
Structural, functional, and evolutionary perspectives of bacterial iron repertoire: bacterioferritin and bacterioferritin-associated ferredoxin as emerging targets against antibiotic resistance	5
Screening and identification of Paenibacillus polymyxa GRY-11 and its biological control potential against apple replant disease	5
Comparative analyses of gut microbiota reveal ammonia detoxification and nitrogen assimilation in Cyprinus carpio var. specularis	5
Microbial mediated degradation of azo dyes from textile effluents is associated with the production of extracellular polysaccharides	5
Flagellimonas algarum sp. nov., isolated from dense mats of filamentous algae	5
Cellular and molecular outcomes of Pseudomonas putida KT2440 exposure to aluminium	5