OOIR: Observatory of International Research

Papers

(The TQCC of Folia Microbiologica is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2021-01-01 to 2025-01-01.)

Article	Citations
Metagenomic analysis of intestinal microbiota in wild rats living in urban and rural habitats	47
Phylogenic diversity of bacteria associated with potentially toxic cyanobacteria Microcystis aeruginosa: a synthesis on its bloom dynamics	34
Development of a CRISPR/Cpf1 system for multiplex gene editing in Aspergillus oryzae	33
The role of microbiota in colorectal cancer	32
A mouse air pouch model for evaluating the anti-bacterial efficacy of phage MR-5 in resolving skin and soft tissue infection induced by methicillin-resistant Staphylococcus aureus	29
Upgrading the accumulation of ginsenoside Rd in Panax notoginseng by a novel glycosidase-producing endophytic fungus G11-7	26
Biofilm formation potential of Bacillus toyonensis and Pseudomonas aeruginosa on the stainless steel test surfaces in a model dairy batch system	25
Antimicrobial activity and properties of de novo design of short synthetic lipopeptides	24
Biotransformation of progesterone by endophytic fungal cells immobilized on electrospun nanofibrous membrane	23
Antimicrobial peptide in polymethylmethacrylate bone cement as a prophylaxis of infectious complications in orthopedics–an experiment in a murine model	23
Gut microbiota in relationship to diabetes mellitus and its late complications with a focus on diabetic foot syndrome: A review	23
Whole genome analysis of Pseudomonas mandelii SW-3 and the insights into low-temperature adaptation	21
Detection of oxalyl-CoA decarboxylase (oxc) and formyl-CoA transferase (frc) genes in novel probiotic isolates capable of oxalate degradation in vitro	20
Antioxidant properties and L-asparaginase activities of endophytic fungi from Cymbidium orchids	20
A recombinase polymerase amplification–SYBR Green I assay for the rapid and visual detection of Brucella	20
Evaluation of mango residues to produce hyaluronic acid by Streptococcus zooepidemicus	19
Rare multi-fungal sepsis: a case of triple-impact immunoparalysis	19
First isolation of Arcanobacterium pinnipediorum from a grey seal pup (Halichoerus grypus) in the UK	18
Development of point-of-need colourimetric, isothermal diagnostic assays for specific detection of Bacillus subtilis using shikimate dehydrogenase gene	18
Can manipulation of gut microbiota really be transformed into an intervention strategy for cardiovascular disease management?	18
Re-discovery of Trichophyton bullosum in North Africa as a cause of severe dermatophytosis in donkeys	18
Ribotyping of Clostridioides difficile in the Liberec Regional Hospital: a tertiary health care facility	17
Anti-Candida activity and biocompatibility of silver nanoparticles associated with denture glaze: a new approach to the management of denture stomatitis	17
Effect of hyperbaric oxygen on the growth and susceptibility of facultatively anaerobic bacteria and bacteria with oxidative metabolism to selected antibiotics	17
Rhizobacterial community and growth-promotion trait characteristics of Zea mays L. inoculated with Pseudomonas fluorescens UM270 in three different soils	16

Biochemical characterization of a novel β-galactosidase from Pedobacter sp. with strong transglycosylation activity at low lactose concentration	16
LuxS-mediated quorum sensing system in Lactobacillus plantarum NMD-17 from koumiss: induction of plantaricin MX in co-cultivation with certain lactic acid bacteria	15
Gut microbiota composition in recurrent acute otitis media: a cross-sectional observational study	15
Investigation into the bacterial diversity of sediment samples obtained from Berg River, Western Cape, South Africa	14
Evaluation of red-colored carotenoids in yeasts by the biomass color	14
Fine-scale mapping of the microbiome on phylloplane and spermoplane of aromatic and non-aromatic rice genotypes	14
Genome sequence and comparative analysis of fungal antagonistic strain Bacillus velezensis LJBV19	14
The role of bacteria in gallstone formation	13
Harnessing the combined effect of antivirulence agent trans-chalcone with bactericidal curcumin against sortase A enzyme to tackle Gram-positive bacterial infections	13
Metabarcoding expands knowledge on diversity and ecology of rare actinobacteria in the Brazilian Cerrado	12
Ethanol as a carotenoid production stimulator in Dunaliella salina CCAP 19/18	12
Isolation and identification of nontuberculous mycobacteria from raw milk and traditional cheese based on the 16S rRNA and hsp65 genes, Tehran, Iran	12
Gut microbiota dynamics in KK-Ay mice: restoration following antibiotic treatment	11
Genome sequence of a multidrug-resistant Campylobacter coli strain isolated from a newborn with severe diarrhea in Lebanon	11
Solid-state fermentation of brown seaweeds for the production of alginate lyase using marine bacterium Enterobacter tabaci RAU2C	11
Evaluation of endosulfan degradation capacity by six pure strains isolated from a horticulture soil	10
Excavation, expression, and functional analysis of a novel zearalenone-degrading enzyme	10
Microbial nanotechnology for agriculture, food, and environmental sustainability: Current status and future perspective	10
Metagenomic insights into the microbial community structure and resistomes of a tropical agricultural soil persistently inundated with pesticide and animal manure use	10
Molecular identification of lactic acid bacteria from traditional fermented foods and screening exopolysaccharide production by using food wastes	10
The effect of NaCl, pH, and phosphate on biofilm formation and exopolysaccharide production by high biofilm producers of Bacillus strains	10
Two novel bacteriophages isolated from the environment that can help control activated sludge foaming	10
Isolation of Enterococcus faecalis pathogenic genes isolated from oral infection by the effect of ionic liquids based on amino acid and its expression by real-time PCR	10
Biosurfactant synergized with marine bacterial DNase disrupts polymicrobial biofilms	10
Exploration of microbial communities in the guts and casts of Eudrilus eugeniae, Perionyx excavatus, and Eisenia fetida	9
Prevalence and virulence profiles of ESBL-producing Escherichia coli in urinary and blood infections in South Korea	9
Prolonged acetogenic phase and biological succession during anaerobic digestion using swine manure	9
Antimicrobial efficacy and activity perseverance in arthroplasty of calcium sulfate beads containing vancomycin prepared ahead of time and stored in ready-to-use formula	9
Technological characterization of indigenous lactic acid bacteria from Moroccan camel milk for their potential use as starter or adjunct culture	9
Secondary metabolites produced by Macrophomina phaseolina, a fungal root endophyte of Brugmansia aurea, using classical and epigenetic manipulation approach	9
Fructosyltransferase production by Aspergillus oryzae BM-DIA using solid-state fermentation and the properties of its nucleotide and protein sequences	8
Isolation and identification of two Beauveria bassiana strains from silkworm, Bombyx mori	8
Correction to: Solubilization of rock phosphate by phosphate solubilizing bacteria isolated from effluent treatment plant sludge of a fertilizer plant	8
Fluoroquinolone-resistance mechanisms and molecular epidemiology of ciprofloxacin-resistant Klebsiella pneumoniae isolates in Iran	8
Effects of DNA preservation solution and DNA extraction methods on microbial community profiling of soil	8
Biofilms and nanoparticles: applications in agriculture	8
Enhancing the expression of recombinant small laccase in Pichia pastoris by a double promoter system and application in antibiotics degradation	8
Inhibition of the MepA efflux pump by limonene demonstrated by in vitro and in silico methods	8
Antifungal and antibiofilm effect of duloxetine hydrochloride against Cryptococcus neoformans and Cryptococcus gattii	8
Production, purification, and characterization of p-diphenol oxidase (PDO) enzyme from lignolytic fungal isolate Schizophyllum commune MF-O5	7
Loop-mediated isothermal amplification (LAMP) assay for detection of sesame phyllody phytoplasmas in Vietnam	7
CRISPR-Cas systems: role in cellular processes beyond adaptive immunity	7
Correction to: Molecular chaperone Hsp90 protects KCBP from degradation by proteasome in Dunaliella salina cells	7
The increasing importance of the gut microbiome in acne vulgaris	7
Synthesis and antimicrobial activity of molecular hybrids based on eugenol and chloramphenicol pharmacophores	7
Macronutrients-availing microbiomes: biodiversity, mechanisms, and biotechnological applications for agricultural sustainability	7
Correction to: Traditional to technological advancements in Ganoderma detection methods in oil palm	7
Neutrophil infiltration in co-housed littermates plays a key role in nasal transmission of Streptococcus pneumoniae in an infant mouse model	7
Investigation of clonal diversity, virulence genes, and antibiotic resistance of Staphylococcus aureus recovered from raw cow milk in southern Xinjiang, China	7
Medicines as an emergent contaminant: the review of microbial biodegration potential	7

Anti-inflammatory and wound healing properties of lactic acid bacteria and its peptides	7
Marine microbial enzymes for the production of algal oligosaccharides and its bioactive potential for application as nutritional supplements	6
Impact of environment on transmission of antibiotic-resistant superbugs in humans and strategies to lower dissemination of antibiotic resistance	6
The phosphate-solubilising fungi in sustainable agriculture: unleashing the potential of fungal biofertilisers for plant growth	6
Synergistic interaction of cuminaldehyde and tobramycin: a potential strategy for the efficient management of biofilm caused by Pseudomonas aeruginosa	6
Lepidopteran insects: emerging model organisms to study infection by enteropathogens	6
Current status and applications of genus Geobacillus in the production of industrially important products—a review	6
Identification of filamentous fungi including dermatophytes using MALDI-TOF mass spectrometry	6
Mass spectrometry-based identification of bacteria isolated from industrially contaminated site in Salamanca (Mexico) and evaluation of their potential for DDT degradation	6
Evaluation of endoglucanase and xylanase production by Aspergillus tamarii cultivated in agro-industrial lignocellulosic biomasses	6
Whole-genome sequencing and comparative analysis of Helicobacter pylori GZ7 strain isolated from China	6
C50 carotenoids extracted from Haloterrigena thermotolerans strain K15: antioxidant potential and identification	6
Protein engineering of invertase for enhancing yeast dough fermentation under high-sucrose conditions	6
Characterization of a salt-resistant fibrinolytic protease of Bacillus licheniformis HJ4 isolated from Hwangseokae jeotgal, a traditional Korean fermented seafood	5
MSMEG_5850, a global TetR family member supports Mycobacterium smegmatis to survive environmental stress	5
The theoretical adhesion of Staphylococcus aureus and Pseudomonas aeruginosa as nosocomial pathogens on 3D printing filament materials	5
Combating polymicrobial biofilm: recent approaches	5
Metataxonomic analysis of microbiota from Pakistani dromedary camelids milk and characterization of a newly isolated Lactobacillus fermentum strain with probiotic and bio-yogurt starter traits	5
Mechanisms of medicinal, pharmaceutical, and immunomodulatory action of probiotics bacteria and their secondary metabolites against disease management: an overview	5
Mechanism of drug resistance in bacteria: efflux pump modulation for designing of new antibiotic enhancers	5
Antibacterial activity of selected invertebrate species	5
Taxonomic analysis reveals host preference of rare fungi in endophytes of Vitis vinifera from the Czech Republic	5
COVID-19-associated pulmonary aspergillosis (CAPA): identification of Aspergillus species and determination of antifungal susceptibility profiles	5
Decolorization and degradation of reactive orange 16 by Bacillus stratosphericus SCA1007	5
Attenuation of Pseudomonas aeruginosa biofilm by thymoquinone: an individual and combinatorial study with tetrazine-capped silver nanoparticles and tryptophan	5
Influence of light regulation on growth and enzyme production in rare endolichenic fungi	5
Predicting interactions of the frass-associated yeast Hyphopichia heimii with Olea europaea subsp. cuspidata and twig-boring bark beetles	5
Unravelling the secrets of soil microbiome and climate change for sustainable agroecosystems	5
Low-molecular weight chitosan enhances antibacterial effect of antibiotics and permeabilizes cytoplasmic membrane of Staphylococcus epidermidis biofilm cells	5
Microalgae, a current option for the bioremediation of pharmaceuticals: a review	5
A rare case report of tissue infection caused by Pantoea piersonii (basionym Kalamiella piersonii)	5
Recombinase-aided amplification coupled with lateral flow dipstick for efficient and accurate detection of Bombyx mori nucleopolyhedrovirus	5
An overview on endophytic bacterial diversity habitat in vegetables and fruits	5
Simultaneous PCR detection of Paenibacillus larvae targeting insertion sequence IS256 and Melissococcus plutonius targeting pMP1 plasmid from hive specimens	5