OOIR: Observatory of International Research

Papers

(The TQCC of Canadian Journal of Microbiology is 5. The table below lists those papers that are above that threshold based on CrossRef citation counts [max. 250 papers]. The publications cover those that have been published in the past four years, i.e., from 2020-11-01 to 2024-11-01.)

Article	Citations
Dengue virus: epidemiology, biology, and disease aetiology	144
Functional potential differences between Firmicutes and Proteobacteria in response to manure amendment in a reclaimed soil	44
A review of the taxonomy, genetics, and biology of the genus Escherichia and the type species Escherichia coli	37
Crop, genotype, and field environmental conditions shape bacterial and fungal seed epiphytic microbiomes	35
d-Amino acids in antimicrobial peptides: a potential approach to treat and combat antimicrobial resistance	34
In vitro degradation of low-density polyethylene by new bacteria from larvae of the greater wax moth, Galleria mellonella	31
Recombinase polymerase amplification in the molecular diagnosis of microbiological targets and its applications	21
Proteomics of host–bacterial interactions: new insights from dual perspectives	19
Microorganisms that participate in biochemical cycles in wetlands	18
Rates of fluoroquinolone resistance in domestically acquiredCampylobacter jejuniare increasing in people living within a model study location in Canada	16
Potential impact of SARS-CoV-2 infection on the thymus	16
Fungal endophyte diversity in table grapes	15
A short overview of the CRISPR-Cas adaptation stage	14
Understanding connections and roles of gut microbiome in cardiovascular diseases	14
Characterization of a plant-growth-promoting non-nodulating endophytic bacterium (Stenotrophomonas maltophilia) from the root nodules of Mucuna utilis var. capitata L. (Safed Kaun	13
Community structure and diversity of the microbiomes of two microhabitats at the root–soil interface: implications of meta-analysis of the root-zone soil and root endosphere microbial communities in X	12
Isolation of lipopeptide antibiotics from Bacillus siamensis: a potential biocontrol agent for Fusarium graminearum	11
Old problems and new solutions: antibiotic alternatives in food animal production	11
Frontrunners in the race to develop a SARS-CoV-2 vaccine	11
Development of droplet digital PCR assays to quantify genes involved in nitrification and denitrification, comparison with quantitative real-time PCR and validation of assays in vineyard soil	10
Variety features differentiate microbiota in the grape leaves	10
Evolving the core microbial community in pit mud based on bioturbation of fortified Daqu	10
Evaluation of biochars as carriers for Rhizobium leguminosarum	10
Bioprospection of native psychrotolerant plant-growth-promoting rhizobacteria from Peruvian Andean Plateau soils associated with Chenopodium quinoa	10
Do we still need Illumina sequencing data? Evaluating Oxford Nanopore Technologies R10.4.1 flow cells and the Rapid v14 library prep kit for Gram negative bacteria whole genome assemblies	10

mfsQ encoding an MFS efflux pump mediates adaptive protection of Stenotrophomonas maltophilia against benzalkonium chloride	9
Delineating the key virulence factors and intraspecies divergence of Vibrio harveyi via whole-genome sequencing	9
Effects of Funneliformis mosseae on the utilization of organic phosphorus in Camellia oleifera Abel	9
Biofilm-forming ability of poultry Campylobacter jejuni strains in the presence and absence of Pseudomonas aeruginosa	8
Advancing undergraduate synthetic biology education: insights from a Canadian iGEM student perspective	8
Bacillus subtilis and Bacillus velezensis population dynamics and quantification of spores after inoculation on ornamental plants	8
Staphylococcus aureus grown in anaerobic conditions exhibits elevated glutamine biosynthesis and biofilm units	8
Analysis of bacterial communities associated with Mountain Chickadees (Poecile gambeli) across urban and rural habitats	8
Clinical evaluation of the GeneXpert^® Xpert^® Xpress SARS-CoV-2/Flu/RSV PLUS combination test	8
Diet and ontogeny drastically alter the larval microbiome of the invertebrate modelGalleria mellonella	8
In situ biochemical characterization of Venus cloud particles using a life-signature detection microscope	8
Strain improvement of Trichoderma spp. through two-step protoplast fusion for cellulase production enhancement	7
Diversity and community structure of ammonia-oxidizing archaea in rhizosphere soil of four plant groups in Ebinur Lake wetland	7
Long-term nitrogen fertilization shaped the nifH, nirK, and nosZ gene community patterns in red paddy soil in south China	7
Aluminum induces oxidative damage in Saccharomyces cerevisiae	7
Diversity of soil fungi in the vineyards of Changli region in China	7
Repurposing of escitalopram oxalate and clonazepam in combination with ciprofloxacin and sulfamethoxazole–trimethoprim for treatment of multidrug-resistant microorganisms and evaluation of the cleavag	7
Analysis of microbial community diversity and physicochemical factors in pit mud of different ages based on high-throughput sequencing	7
Quantitative proteomic profiling of shake flask versus bioreactor growth reveals distinct responses of Agrobacterium tumefaciens for preparation in molecular pharming	7
The scientific revolution that unraveled the astonishing DNA repair capacity of the Deinococcaceae: 40 years on	6
Evaluation of the lignite biotransformation capacity of Fusarium sp. NF01 cultured on different growth substrates	6
Sequential markerless genetic manipulations of species from the Neisseria genus	6
Salicylic acids and pathogenic bacteria: new perspectives on an old compound	6
Interplay between stress and immunity triggers herpes zoster infection in COVID-19 patients: a review	6
Exposure of Agrobacterium tumefaciens to agroinfiltration medium demonstrates cellular remodelling and may promote enhanced adaptability for molecular pharming	6
Adhesion and biofilm formation by the opportunistic pathogen Candida tropicalis: what do we know?	6
Lactobacillus rhamnosus cell-free extract targets virulence and antifungal drug resistance in Candida albicans	6
Risk assessment of secondary metabolites produced by fungi in the genus Stemphylium	6
Synergy of a virulent phage (φAB182) with antibiotics leading to successful elimination of biofilms formed by MDR Acinetobacter baumannii	6
The mitochondrial genome of Ophiostoma himal-ulmi and comparison with other fungi causing Dutch elm disease	6
Deep tillage reduces the dependence of tobacco (Nicotiana tabacum L.) on arbuscular mycorrhizal fungi and promotes the growth of tobacco in dryland farming	5
Antifungal mechanisms of lavender essential oil in the inhibition of rot disease caused by Monilinia fructicola in postharvest flat peaches	5
Contamination of hay and haylage with enteric bacteria and selected antibiotic resistance genes following fertilization with dairy manure or biosolids	5
The progress of type II persisters of Escherichia coli O157:H7 to a non-culturable state during prolonged exposure to antibiotic stress with revival being aided through acid-shock treatment and	5
Microbiology of barrier component analogues of a deep geological repository	5
Endophytic fungus diversity in soybean plants submitted to conditions of elevated atmospheric CO₂ and temperature	5
Whole genome sequencing of mesorhizobia isolated from northern Canada	5
Functional analysis of the ocnE gene involved in nicotine-degradation pathways in Ochrobactrum intermedium SCUEC4 and its enzymatic properties	5
The Canadian Fungal Research Network: current challenges and future opportunities	5
Lactiplantibacillus plantarum BW2013 protects mucosal integrity and modulates gut microbiota of mice with colitis	5
Disinfection mechanism of the photocatalytic activity of SnO₂ thin films against Candida albicans, proposed from experimental and simulated perspectives	5
Ultra-performance liquid chromatography-tandem mass spectrometry revealed the significantly different metabolic profiles of Auricularia cornea growing on weakly acidic and weakly alkaline subst	5