mSystems

Article	Citations
Dispersal shapes compositional and functional diversity in aquatic microbial communities	147
Dissecting the genetic features and evolution of Staphylococcus aureus sequence type 88: a global perspective	90
MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening	88
Diverse non-canonical electron bifurcating [FeFe]-hydrogenases of separate evolutionary origins in Hydrogenedentota	83
Botrytis cinerea Transcription Factor BcXyr1 Regulates (Hemi-)Cellulase Production and Fungal Virulence	72
Disturbance–diversity relationships of microbial communities change based on growth substrate	68
Genome-Scale Modeling Specifies the Metabolic Capabilities of Rhizophagus irregularis	68
Visualizing the pH in Escherichia coli Colonies via the Sensor Protein mCherryEA Allows High-Throughput Screening of Mutant Libraries	68
Carbapenem triggers dissemination of chromosomally integrated carbapenemase genes via conjugative plasmids in Escherichia coli	67
PhoPQ-mediated lipopolysaccharide modification governs intrinsic resistance to tetracycline and glycylcycline antibiotics in Escherichia coli	62
Announcing the mSystems special collection on microbial dormancy	60
An Elemental Diet Enriched in Amino Acids Alters the Gut Microbial Community and Prevents Colonic Mucus Degradation in Mice with Colitis	57
Gut Metabolites Are More Predictive of Disease and Cohoused States than Gut Bacterial Features in a Polycystic Ovary Syndrome-Like Mouse Model	57
A simple BLASTn-based approach generates novel insights into the regulation and biological function of type I toxin-antitoxins	55
Uncharacterized and lineage-specific accessory genes within the Proteus mirabilis pan-genome landscape	53
The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin-tolerant Staphylococcus aureus	52
Phenotypic and Genomic Comparison of Staphylococcus aureus Highlight Virulence and Host Adaptation Favoring the Success of Epidemic Clones	51
Cultured Bacteria Provide Insight into the Functional Potential of the Coral-Associated Microbiome	49
Insights into the metabolic specificities of pathogenic strains from the Ralstonia solanacearum species complex	49
Probiotics Bifidobacterium lactis M8 and Lactobacillus rhamnosus M9 prevent high blood pressure via modulating the gut microbiota composit	49
Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics	47
In vitro and ex vivo proteomics of Mycobacterium marinum biofilms and the development of biofilm-binding synthetic nano	47
Ancient Metagenomic Studies: Considerations for the Wider Scientific Community	46
Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation	45
Mucin alleviates colonic barrier dysfunction by promoting spermine accumulation through enhanced arginine metabolism in Limosilactobacillus mucosae	44

Natural Green Spaces, Sensitization to Allergens, and the Role of Gut Microbiota during Infancy	43
Gut phageome in Mexican Americans: a population at high risk for metabolic dysfunction-associated steatotic liver disease and diabetes	42
More Than Just a Spearhead: Diverse Functions of PAAR for Assembly and Delivery of Toxins of the Contractile Injection Systems	42
Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype	41
Variations in the oral microbiome and metabolome of methamphetamine users	41
Regulatory networks of FUR and NtcA are intertwined by transcriptional regulators, two-component systems, serine/threonine kinases, and sigma factors in Anabaena sp. PCC	40
A Metagenomic Investigation of Spatial and Temporal Changes in Sewage Microbiomes across a University Campus	40
Deciphering the antigen specificities of antibodies by clustering their complementarity determining region sequences	39
Gut microbiota contribute to high-altitude adaptation in tree sparrows	38
Insights into Adaptive Mechanisms of Extreme Acidophiles Based on Quorum Sensing/Quenching-Related Proteins	38
Cell-Cell Signaling Proteobacterial LuxR Solos: a Treasure Trove of Subgroups Having Different Origins, Ligands, and Ecological Roles	38
STENSL: Microbial Source Tracking with ENvironment SeLection	37
Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses	37
Sodium butyrate facilitates CRHR2 expression to alleviate HPA axis hyperactivity in autism-like rats induced by prenatal lipopolysaccharides through histone deacetylase inhibition	37
Seasonality and longer-term development generate temporal dynamics in the Populus microbiome	37
Microbial Diversity and Interaction Specificity in Kombucha Tea Fermentations	37
Clade-specific long-read sequencing increases the accuracy and specificity of the gyrB phylogenetic marker gene	37
Sepsis-Induced Gut Dysbiosis Mediates the Susceptibility to Sepsis-Associated Encephalopathy in Mice	37
Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses	36
Mutation in the two-component regulator BaeSR mediates cefiderocol resistance and enhances virulence in Acinetobacter baumannii	36
A Complex Microbial Interplay Underlies Recurrent Vulvovaginal Candidiasis Pathobiology	36
Lipidomics and Comparative Metabolite Excretion Analysis of Methanogenic Archaea Reveal Organism-Specific Adaptations to Varying Temperatures and Substrate Concentrations	36
Transcriptional Landscape of Ectomycorrhizal Fungi and Their Host Provides Insight into N Uptake from Forest Soil	35
Microbial Functional Diversity Correlates with Species Diversity along a Temperature Gradient	35
Genome-scale metabolic model of the versatile bacterium Paracoccus denitrificans Pd1222	34
A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology	34
Paired associated SARS-CoV-2 spike variable positions: a network analysis approach to emerging variants	34
Erratum for Chen et al., “Evolution of Ciprofloxacin Resistance-Encoding Genetic Elements in Salmonella”	33
CRISPRi screening reveals E. coli ’s anaerobic-like respiratory adaptations to gentamicin: membrane depolarization by CpxR	33
Correction for Boysen et al., “Particulate Metabolites and Transcripts Reflect Diel Oscillations of Microbial Activity in the Surface Ocean”	33
Separate, separated, and together: the transcriptional program of the Clostridium acetobutylicum-Clostridium ljungdahlii syntrophy leading to interspecies cell fusion	33
Exploring the complex interplay between oral Fusobacterium nucleatum infection, periodontitis, and robust microRNA induction, including multiple known oncogenic miRNAs	33
Phenotypic and genomic analysis of the hypervirulent methicillin-resistant Staphylococcus aureus ST630 clone in China	32
Integrated analysis of metabolome and microbiome in a rat model of perimenopausal syndrome	32
Putative Host-Derived Insertions in the Genomes of Circulating SARS-CoV-2 Variants	32
The transcriptional response to low temperature is weakly conserved across the Enterobacteriaceae	31
Long-Term Cellulose Enrichment Selects for Highly Cellulolytic Consortia and Competition for Public Goods	31
Predicting Microbiome Metabolism and Interactions through Integrating Multidisciplinary Principles	31
Microbiota-derived indole acetic acid extends lifespan through the AhR-Sirt2 pathway in Drosophila	30
Functional and Compositional Changes in the Fecal Microbiome of a Shorebird during Migratory Stopover	30
The two-component system expression patterns and immune regulatory mechanism of Vibrio parahaemolyticus with different genotypes at the early stage of infection in THP-1	29
Stimulation of Distinct Rhizosphere Bacteria Drives Phosphorus and Nitrogen Mineralization in Oilseed Rape under Field Conditions	29
A mixed-model approach for estimating drivers of microbiota community composition and differential taxonomic abundance	29
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research	29
Gut-kidney axis modulation by viable and inactivated Akkermansia muciniphila mitigates avian hyperuricemia through microbial-metabolic crosstalk	29
Quantification of metabolic niche occupancy dynamics in a Baltic Sea bacterial community	29
Interactive Analysis of Functional Residues in Protein Families	29
Human fecal microbiota transplantation attenuates high dietary oxalate-induced renal calcium oxalate crystal depositions in rats via repairing Allobaculum- related gut b	29
Expanding the Staphylococcus aureus SarA Regulon to Small RNAs	29
Association of body index with fecal microbiome in children cohorts with ethnic–geographic factor interaction: accurately using a Bayesian zero-inflated negative binomial regression model	28

Food desert residence has limited impact on veteran fecal microbiome composition: a U.S. Veteran Microbiome Project study	28
Cyberlindnera jadinii and Kluyveromyces lactis , two fungi used in food processes, have potential probiotic effects on gut inflammation	28
Frequent Occurrence and Metabolic Versatility of Marinifilaceae Bacteria as Key Players in Organic Matter Mineralization in Global Deep Seas	28
Correction for Brennan et al., “Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution”	28
Genome-Scale Metabolic Modelling of Lifestyle Changes in Rhizobium leguminosarum	28
Longitudinal Study of the Effects of Flammulina velutipes Stipe Wastes on the Cecal Microbiota of Laying Hens	28
Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome	28
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an In Vitro Model for Cheese Communities	27
Bacillus coagulans restores pathogen-induced intestinal dysfunction via acetate–FFAR2–NF-κB–MLCK–MLC axis in Apostichopus japonicus	27
Characterizing alterations in the gut microbiota following postpartum weight change	27
Emergence of plasmid-mediated fosfomycin resistance among Escherichia coli harboring fosA4 , tet (X4), and	27
Providing insight into the mechanism of action of cationic lipidated oligomers using metabolomics	27
The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions	27
Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure”	26
Using Community Ecology Theory and Computational Microbiome Methods To Study Human Milk as a Biological System	26
Microbial sensor variation across biogeochemical conditions in the terrestrial deep subsurface	26
Host Hybridization Dominates over Cohabitation in Affecting Gut Microbiota of Intrageneric Hybrid Takifugu Pufferfish	26
Longitudinal dynamics of the nasopharyngeal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their children	26
Connections between Exoproteome Heterogeneity and Virulence in the Oral Pathogen Aggregatibacter actinomycetemcomitans	26
Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia	26
Lineage-Specific Growth Curves Document Large Differences in Response of Individual Groups of Marine Bacteria to the Top-Down and Bottom-Up Controls	25
(Meta)Genomic Analysis Reveals Diverse Energy Conservation Strategies Employed by Globally Distributed Gemmatimonadota	25
Characterization and Spatial Mapping of the Human Gut Metasecretome	25
Involvement of Flagellin in Kin Recognition between Bacillus velezensis Strains	25
Functional potential and evolutionary response to long-term heat selection of bacterial associates of coral photosymbionts	25
Meta Biome: a multiscale model integrating agent-based and metabolic networks to reveal spatial regulation in gut mucosal microbial communities	25
Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2	25
More than two components: complexities in bacterial phosphosignaling	25
A data-driven approach for timescale decomposition of biochemical reaction networks	25
Multi-omic Profiling Reveals that Intra-abdominal-Hypertension-Induced Intestinal Damage Can Be Prevented by Microbiome and Metabolic Modulations with 5-Hydroxyindoleacetic Acid as a Diagnostic Marker	25
N 2 Fixation in Trichodesmium Does Not Require Spatial Segregation from Photosynthesis	25
Species-Level Resolution of Female Bladder Microbiota from 16S rRNA Amplicon Sequencing	24
Real-world bisphenol A exposure not linked to microbiota dynamics in childhood obesity	24
Temporal dynamics of gut microbiomes in non-industrialized urban Amazonia	24
A benchmark of optimization solvers for genome-scale metabolic modeling of organisms and communities	24
Global m6A RNA and whole 5mC DNA methylation specifically contribute to cell replicative and premature senescence induced by extrinsic oxidative stress	24
Auxin-mediated regulation of susceptibility to toxic metabolites, c-di-GMP levels, and phage infection in the rhizobacterium Serratia plymuthica	24
Soil microbiome interventions for carbon sequestration and climate mitigation	24
Growth hormone combined with estrogen improves intrauterine adhesion fibrosis by downregulating endometrial microbial citraconic acid to target β-catenin protein	24
Plasmids Shape the Current Prevalence of tmexCD1-toprJ1 among Klebsiella pneumoniae in Food Production Chains	24
Disproportionation of Inorganic Sulfur Compounds by Mesophilic ChemolithoautotrophicCampylobacterota	24
Oxytetracycline hyper-production through targeted genome reduction of Streptomyces rimosus	23
Identification of a Specific Biomarker of Acinetobacter baumannii Global Clone 1 by Machine Learning and PCR Related to Metabolic Fitness of ESKAPE Pathogens	23
2024 Acknowledgment of mSystems Ad Hoc Reviewers	23
Temporal Dynamics of Rare and Abundant Soil Bacterial Taxa from Different Fertilization Regimes Under Various Environmental Disturbances	23
Thermodynamic and Kinetic Modeling Directs Pathway Optimization for Isopropanol Production in a Gas-Fermenting Bacterium	23
Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli	23
An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease	23
Genome-Guided Discovery of Natural Products through Multiplexed Low-Coverage Whole-Genome Sequencing of Soil Actinomycetes on Oxford Nanopore Flongle	23
Repurposing of the antimalarial agent tafenoquine to combat MRSA	23
eIF6 deficiency regulates gut microbiota, decreases systemic inflammation, and alleviates atherosclerosis	23
Differences in salivary microbiome among children with tonsillar hypertrophy and/or adenoid hypertrophy	23
Bile acid-gut microbiota imbalance in cholestasis and its long-term effect in mice	22
Dynamics of the Gut Microbiome in Shigella -Infected Children during the First Two Years of Life	22
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings	22
Genome-resolved year-round dynamics reveal a broad range of giant virus microdiversity	22
Genome-Wide Identification of Ralstonia solanacearum Genes Required for Survival in Tomato Plants	22
Molecular physiology of Antarctic diatom natural assemblages and bloom event reveal insights into strategies contributing to their ecological success	21
Secondary metabolite profiling of Pseudomonas aeruginosa isolates reveals rare genomic traits	21
Metabologenomics reveals strain-level genetic and chemical diversity of Microcystis secondary metabolism	21
Deep learning enabled integration of tumor microenvironment microbial profiles and host gene expressions for interpretable survival subtyping in diverse types of cancers	21
Proteome efficiency of metabolic pathways in Escherichia coli increases along the nutrient flow	21
Systematic evaluation of phenotypic variations induced by prophages in a clinical isolate of Pseudomonas aeruginosa	21
Estimating the size of fields in biomedical sciences	21
Inactivation of Nitrite-Dependent Nitric Oxide Biosynthesis Is Responsible for Overlapped Antibiotic Resistance between Naturally and Artificially Evolved Pseudomonas aeruginosa	21
Soil properties and plant functional traits have different importance in shaping rhizosphere soil bacterial and fungal communities in a meadow steppe	21
Regionalization and Shaping Factors for Microbiomes and Core Resistomes in Atmospheric Particulate Matters	21
Note on the Difference between the Principal Balance Analysis with NearestBalance and Constrained Methods	21
Adaptive attenuation of virulence in hypervirulent carbapenem-resistant Klebsiella pneumoniae	21
Microbial life-history strategies and genomic traits between pristine and cropland soils	20
Sharing of Antimicrobial Resistance Genes between Humans and Food Animals	20
Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils	20
Identification and Characterization of Major Bile Acid 7α-Dehydroxylating Bacteria in the Human Gut	20
AcaFinder: Genome Mining for Anti-CRISPR-Associated Genes	20
Fine-Scale Reconstruction of the Evolution of FII-33 Multidrug Resistance Plasmids Enables High-Resolution Genomic Surveillance	20
Cell behaviors underlying Myxococcus xanthus aggregate dispersal	20
Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions	20
Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism	20
High-Frequency, High-Throughput Quantification of SARS-CoV-2 RNA in Wastewater Settled Solids at Eight Publicly Owned Treatment Works in Northern California Shows Strong Association with COVID-19 Inci	20
Carbohydrate Metabolism Affects Macrophage-Mediated Killing of Enterococcus faecalis	20

Race, the Vaginal Microbiome, and Spontaneous Preterm Birth	19
Correction for Demory et al., “Linking Light-Dependent Life History Traits with Population Dynamics for Prochlorococcus and Cyanophage”	19
Predicting the Next Superspreader	19
Unveiling the role of phages in shaping the periodontal microbial ecosystem	19
Metagenomics Unveils Posidonia oceanica “Banquettes” as a Potential Source of Novel Bioactive Compounds and Carbohydrate Active Enzymes (CAZymes)	19
Quantifying Shared and Unique Gene Content across 17 Microbial Ecosystems	19
Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes	19
Augmenting bacterial similarity measures using a graph-based genome representation	19
Reply to Austin and Korem, “Compositional transformations can reasonably introduce phenotype-associated values into sparse features”	19
Benchmarking low- and high-throughput protein cleanup and digestion methods for human fecal metaproteomics	19
Strong Dispersal Limitation of Microbial Communities at Shackleton Glacier, Antarctica	19
From insect endosymbiont to phloem colonizer: comparative genomics unveils the lifestyle transition of phytopathogenic Arsenophonus strains	19
Conceptual Exchanges for Understanding Free-Living and Host-Associated Microbiomes	18
Kinetics-based inference of environment-dependent microbial interactions and their dynamic variation	18
2021 Acknowledgment of mSystems Ad Hoc Reviewers	18
Antibacterial effect of phage cocktails and phage-antibiotic synergy against pathogenic Klebsiella pneumoniae	18
Building Natural Product Libraries Using Quantitative Clade-Based and Chemical Clustering Strategies	18
A Genomic Survey of the Natural Product Biosynthetic Potential of Actinomycetes Isolated from New Zealand Lichens	18
Protist Diversity and Metabolic Strategy in Freshwater Lakes Are Shaped by Trophic State and Watershed Land Use on a Continental Scale	18
The resistomes of rural and urban pigs and poultry in Ghana	18
The heterogenous and diverse population of prophages in Mycobacterium genomes	18
Virus–prokaryote infection pairs associated with prokaryotic production in a freshwater lake	18
Global Composition of the Bacteriophage Community in Honey Bees	18
Outbreak of NDM-5-producing Klebsiella pneumoniae ST307: an emerging high-risk antimicrobial resistance clone in Shanghai, China	18
Multi-level regulation of hindgut homeostasis by volatile fatty acid administration in dairy goats: linking microbial metabolism to epithelial inflammation and barrier function	18
Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples	18
Tracing the evolution: the rise of Salmonella Thompson co-resistant to clinically important antibiotics in China, 1997–2020	18
Fiber, microbiomes, and SCFAs: insights from companion animal models to inform personalized nutrition	18
A bacterial sensor taxonomy across earth ecosystems for machine learning applications	18
Plasmid-borne mcr-1 and replicative transposition of episomal and chromosomal bla NDM-1 , bla	18
Transcriptome Dynamics of Pseudomonas aeruginosa during Transition from Overlapping To Non-Overlapping Cell Cycles	18
Intra-tumor microbiome-based tumor survival indices predict immune interaction and drug sensitivity on pan-cancer scale	18
Localization and symbiotic status of probiotics in the coral holobiont	18
Evidence for a Putative Isoprene Reductase in Acetobacterium wieringae	17
Comparison of different microbiome analysis pipelines to validate their reproducibility of gastric mucosal microbiome composition	17
Use of single-cell technology to improve our understanding of the role of TLR2 in macrophage– Mycobacterium tuberculosis interaction	17
Building a queer- and trans-inclusive microbiology conference	17
Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs	17
Genomic and functional characterization of a Butyricicoccus porcorum strain isolated from human gut microbiota	17
Bacterial alarmone (p)ppGpp mediates the pathogenicity of Clavibacter michiganensis via a dual mechanism that affects both enzyme production and the Tat secretion system	17
Antiviral defense systems in the rumen microbiome	17
Wood–Ljungdahl pathway found in novel marine Korarchaeota groups illuminates their evolutionary history	17
Chlamydial YAP activation in host endocervical epithelial cells mediates pro-fibrotic paracrine stimulation of fibroblasts	17
Nutrient Availability and Phage Exposure Alter the Quorum-Sensing and CRISPR-Cas-Controlled Population Dynamics of Pseudomonas aeruginosa	17
Construction and Modeling of a Coculture Microplate for Real-Time Measurement of Microbial Interactions	17
Ribosome profiling reveals the fine-tuned response of Escherichia coli to mild and severe acid stress	17
Metabolic remodeling of microorganisms by mobile genetic elements alters mutualistic community composition	17
Modification and analysis of context-specific genome-scale metabolic models: methane-utilizing microbial chassis as a case study	17
Genetic and Transcriptomic Characteristics of RhlR-Dependent Quorum Sensing in Cystic Fibrosis Isolates of Pseudomonas aeruginosa	17
Apex Predator Nematodes and Meso-Predator Bacteria Consume Their Basal Insect Prey through Discrete Stages of Chemical Transformations	17
Antimicrobial resistance in a protracted war setting: a review of the literature from Palestine	17
Proteomics and Transcriptomics Uncover Key Processes for Elasnin Tolerance in Methicillin-Resistant Staphylococcus aureus	17
Ruminal microbiota-host crosstalks promote ruminal epithelial development in neonatal lambs with alfalfa hay introduction	17
Unexplored diversity and potential functions of extra-chromosomal elements	17
Interactions between native soil microbiome and a synthetic microbial community reveals bacteria with persistent traits	17
Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture	17
The Future Is Big—and Small: Remote Sensing Enables Cross-Scale Comparisons of Microbiome Dynamics and Ecological Consequences	16
Short-Chain Fatty Acids Reduced Renal Calcium Oxalate Stones by Regulating the Expression of Intestinal Oxalate Transporter SLC26A6	16
Comprehensive genomic landscape of antibiotic resistance in Staphylococcus epidermidis	16
Metabolic Phenotyping of Marine Heterotrophs on Refactored Media Reveals Diverse Metabolic Adaptations and Lifestyle Strategies	16
Moisture Controls the Suppression of Panax notoginseng Root Rot Disease by Indigenous Bacterial Communities	16
The function of the gut microbiota–bile acid–TGR5 axis in diarrhea-predominant irritable bowel syndrome	16
Extending the Proteomic Characterization of Candida albicans Exposed to Stress and Apoptotic Inducers through Data-Independent Acquisition Mass Spectrometry	16
Molecular Origins of Transcriptional Heterogeneity in Diazotrophic Klebsiella oxytoca	16
Caenorhabditis nematodes influence microbiome and metabolome characteristics of their natural apple substrates over time	16
The cvn8 Conservon System Is a Global Regulator of Specialized Metabolism in Streptomyces coelicolor during Interspecies Interactions	16
Dynamic genome-based metabolic modeling of the predominant cellulolytic rumen bacterium Fibrobacter succinogenes S85	16
Allosteric regulation of pyruvate kinase enables efficient and robust gluconeogenesis by preventing metabolic conflicts and carbon overflow	16
Genetic requirements for uropathogenic E. coli proliferation in the bladder cell infection cycle	16
The combination of Clostridium butyricum and Akkermansia muciniphila mitigates DSS-induced colitis and attenuates colitis-associated tumor	16
Antitumor Activities of tRNA-Derived Fragments and tRNA Halves from Non-pathogenic Escherichia coli Strains on Colorectal Cancer and Their Structure-Activity Relationship	16
Discovery and characterization of novel DNA viruses in Apis mellifera : expanding the honey bee virome through metagenomic analysis	16
Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution	16
Global Analysis of Biomineralization Genes in Magnetospirillum magneticum AMB-1	16
Multilayered Networks of SalmoNet2 Enable Strain Comparisons of the Salmonella Genus on a Molecular Level	16
Methods and Strategies to Uncover Coral-Associated Microbial Dark Matter	16
GplR1, an unusual TetR-like transcription factor in Mycobacterium abscessus, controls the production of cell wall glycopeptidolipids, colony morphology, and virulence	16
Interrogation of Essentiality in the Reconstructed Haemophilus influenzae Metabolic Network Identifies Lipid Metabolism Antimicrobial Targets: Preclinical Evaluation of a FabH β-Ketoacyl-ACP Synthase	16
A new hypothesis on BV etiology: dichotomous and crisscrossing categorization of complex versus simple on healthy versus BV vaginal microbiomes	16
Differential genome organization revealed by comparative topological analysis of Mycobacterium tuberculosis strains H37Rv and H37Ra	15
Exposure to high altitude leads to disturbances in host metabolic homeostasis: study of the effects of hypoxia-reoxygenation and the associations between the microbiome and metabolome	15
The direct and indirect drivers shaping RNA viral communities in grassland soils	15
Gut Microbiome Alterations Associated with Diabetes in Mexican Americans in South Texas	15
Modeling Site-Specific Nucleotide Biases Affecting Himar1 Transposon Insertion Frequencies in TnSeq Data Sets	15
The intestinal microbiota predicts COVID-19 severity and fatality regardless of hospital feeding method	15
A photoheterotrophic bacterium from Iceland has adapted its photosynthetic machinery to the long days of polar summer	15
NanoCore: core-genome-based bacterial genomic surveillance and outbreak detection in healthcare facilities from Nanopore and Illumina data	15
Comparative metagenome-associated analysis of gut microbiota and antibiotic resistance genes in acute gastrointestinal injury patients with the risk of in-hospital mortality	15
A sequential one-pot approach for rapid and convenient characterization of putative restriction-modification systems	15
Bridging the Gap between Analytical and Microbial Sciences in Microbiome Research	15
Erratum for Brüwer et al., “ In situ cell division and mortality rates of SAR11, SAR86, Bacteroidetes , and Aurantivirga	15
Characterization of a Marine Diatom Chitin Synthase Using a Combination of Meta-Omics, Genomics, and Heterologous Expression Approaches	15
Gut microbiome diversity and biogeography for Chinese bumblebee Bombus pyrosoma	15
Interplay between bacterial 5′-NAD-RNA decapping hydrolase NudC and DEAD-box RNA helicase CsdA in stress responses	15
Multi-trajectories of BMI, waist circumference, gut microbiota, and incident dyslipidemia: a 27-year prospective study	15