Environmental Microbiology

Article	Citations
	126
One substrate, many fates: different ways of methanol utilization in the acetogen Acetobacterium woodii	110
How does metal soil pollution change the plant mycobiome?	83
Late Pleistocene‐dated divergence between South Hemisphere populations of the non‐conventional yeast L. cidri	68
Sulfidic acetate mineralization at 45°C by an aquifer microbial community: key players and effects of heat changes on activity and community structure	68
Prevalence, complete genome, and metabolic potentials of a phylogenetically novel cyanobacterial symbiont in the coral‐killing sponge, Terpios hoshinota	63
Specificity and genetic polymorphism in the Vfm quorum sensing system of plant pathogenic bacteria of the genus Dickeya	62
A lipopolysaccharide‐dependent phage infects a pseudomonad phytopathogen and can evolve to evade phage resistance	60
Intra‐genomic rRNA gene variability of Nassellaria and Spumellaria (Rhizaria, Radiolaria) assessed by Sanger, MinION and Illumina sequencing	58
Microbial community origin and fate through a rural wastewater treatment plant	56
Enhanced ability of freshwater bacteria to secrete extracellular vesicles upon interaction with virus	55
The carnitine degradation pathway ofAcinetobacter baumanniiand its role in virulence	53
Microbe–sediment interactions in Great Lakes recreational waters: Implications for human health risk	50
The toxicological spectrum of the Bacillus cereus toxin cereulide points towards niche‐specific specialisation	50
Enrichment of nosZ‐type denitrifiers by arbuscular mycorrhizal fungi mitigates N2O emissions from soybean stubbles	50
Genomic differentiation of three pico‐phytoplankton species in the Mediterranean Sea	50
When the going gets tough, the tough get going—Novel bacterial AAA+ disaggregases provide extreme heat resistance	48
Assembly and comparative analyses of the Geosiphon pyriformis metagenome	45
Issue Information	45
Hunting for pigments in bacterial settlers of the Great Pacific Garbage Patch	45
Validation of key sponge symbiont pathways using genome‐centric metatranscriptomics	44
Beyond purified dietary fibre supplements: Compositional variation between cell wall fibre from different plants influences human faecal microbiota activity and growth in vitro	43
Prescribed fire selects for a pyrophilous soil sub‐community in a northern California mixed conifer forest	43
Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutants from pharmaceutical companies	43
An atlas of bacterial secondary metabolite biosynthesis gene clusters	43

ArsV and ArsW provide synergistic resistance to the antibiotic methylarsenite	42
Single‐amplified genomes reveal most streamlined free‐living marine bacteria	42
Impact of salinity origin on microbial communities in saline springs within the Illinois Basin, USA	41
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Effects of chaotropic salts on global proteome stability in halophilic archaea: Implications for life signatures on Mars	40
Response of the plant core microbiome to Fusarium oxysporum infection and identification of the pathobiome	40
Toward an accurate mechanistic understanding of Wolbachia‐induced cytoplasmic incompatibility	39
Environmental vibrio phage–bacteria interaction networks reflect the genetic structure of host populations	39
Coral holobiont research needs spatial analyses at the microbial scale	36
Anaerobic methanotrophy is stimulated by graphene oxide in a brackish urban canal sediment	36
The Bacterial Genus Ramlibacter: Betaproteobacteria Capable of Surviving in Oligotrophic Environments Thanks to Several Shared Genetic Adaptation Traits	36
Drivers of fungal diversity and community biogeography differ between green roofs and adjacent ground‐level green space	35
Carbon substrate re‐orders relative growth of a bacterium using Mo‐, V‐, or Fe‐nitrogenase for nitrogen fixation	35
Biodegradation of pollutants by exoelectrogenic bacteria is not always performed extracellularly	35
Wolbachia in scale insects: a distinct pattern of infection frequencies and potential transfer routes via ant associates	34
The acetoin assimilation pathway of Pseudomonas putida KT2440 is regulated by overlapping global regulatory elements that respond to nutritional cues	34
New Insight Into the Mechanism of Nitrite Enhancement on Heterotrophic Nitrification and Aerobic Denitrification Bacterium in Gene Expression	33
A meta‐analysis study of the robustness and universality of gut microbiota–shrimp diseases relationship	33
Life strategies and metabolic interactions of core microbes during thiosulphate‐based denitrification	32
Effects of Fire Intensity on Soil Microbial Ecology in a Grassland Ecosystem	32
Volatile Organic Compounds of Diverse Origins and Their Changes Associated With Cultivar Decay in a Fungus‐Farming Termite	31
Biogeography of culturable marine bacteria from both poles reveals that ‘everything is not everywhere’ at the genomic level	31
Physiological stage drives fungal community dynamics and diversity in Leptospermum scoparium (mānuka) flowers	31
Ornithine decarboxylase of the fungal pathogenColletotrichum higginsianumplays an important role in regulating global metabolic pathways and virulence	31
Discovery of the non‐cosmopolitan lineages in Candidatus Thermoprofundales	31
Bacterial community dynamics on bats and the implications for pathogen resistance	30
Symbiotic germination and development of fully mycoheterotrophic plants convergently targeting similar Glomeraceae taxa	30
Low phosphate mitigates cadmium‐induced oxidative stress in Saccharomyces cerevisiae by enhancing endogenous antioxidant defence system	30
Oak Wilt Disease May Reduce the Initial Decay Rate of Dead Quercus serrata Stems by Altering Fungal Communities in the Wood	29
Issue Information	29
Prophages carrying Zot toxins on different Vibrio genomes: A comprehensive assessment using multilayer networks	29
Virus ecology and 7‐year temporal dynamics across a permafrost thaw gradient	29
CARD‐FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes	29
High diversity of pathogenic Escherichia coli clones carrying mcr‐1 among gulls underlines the need for strategies at the environment–livestock–human interface	28
Coupled C, H, N, S and Fe biogeochemical cycles operating in the continental deep subsurface of the Iberian Pyrite Belt	28
Seasonal variation significantly influenced the stochasticity of community assembly of amphibian symbiotic bacteria	28
Fine‐scale mapping of physicochemical and microbial landscapes of the coral skeleton	28
Horizontal gene transfer (HGT) and microbial evolution	28
Enteroviruses in Water: Epidemiology, Detection and Inactivation	27
Optimal Cell Length for Exploration and Exploitation in Chemotactic Planktonic Bacteria	27
Issue Information	27
A novel soluble di‐iron monooxygenase from the soil bacterium Solimonas soli	26
Correction to “Preventing multiresistance: New insights for managing fungal adaptation”	26
Revealing human impact on natural ecosystems through soil bacterial DNA sampled from an archaeological site	26
The filamentous γ‐prefoldin chaperone is not essential for growth and thermal adaptation in Methanocaldococcus jannaschii	26
Metabolic Segregation and Functional Gene Clusters in Anaerobic Digestion Consortia	26
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Novel oil‐associated bacteria in Arctic seawater exposed to different nutrient biostimulation regimes	26
Phytoplankton exudates provide full nutrition to a subset of accompanying heterotrophic bacteria via carbon, nitrogen and phosphorus allocation	26
Long‐range alteration of the physical environment mediates cooperation between Pseudomonas aeruginosa swarming colonies	25

Synthesis of the unusual lipid bis(monoacylglycero)phosphate in environmental bacteria	25
Seasonal shifts in Fe‐acquisition strategies in Southern Ocean microbial communities revealed by metagenomics and autonomous sampling	25
Geography and environmental pressure are predictive of class‐specific radioresistance in black fungi	25
Diversity of novel archaeal viruses infecting methanogens discovered through coupling of stable isotope probing and metagenomics	25
Distribution, causal agents, and infection dynamic of emerging ink disease of sweet chestnut in Southern Switzerland	25
Highly Dynamic Archaeal and Bacterial Communities From the Surface to the Deep in the Atlantic Ocean	24
Unexpected role of electron‐transfer hub in direct degradation of pollutants by exoelectrogenic bacteria	24
Core rhizosphere microbiome ofPanax notoginsengand its associations with belowground biomass and saponin contents	24
Evidence for reciprocal evolution of the global repressor Mlc and its cognate phosphotransferase system sugar transporter	24
Environmental exposure more than plastic composition shapes marine microplastic‐associated bacterial communities inPacificversusCaribbeanfield incubations	24
Cyanophage Infections in a Sponge Intracellular Cyanobacterial Symbiont	23
How good are global DNA‐based environmental surveys for detecting all protist diversity? Arcellinida as an example of biased representation	23
Issue Information	23
The fitness benefit of pyoverdine cross‐feeding by Pseudomonas protegens Pf‐5	23
AwMelWolbachiavariant inAedes aegyptifrom field‐collectedDrosophila melanogasterwith increased phenotypic stability under heat stress	23
MoOpy2 is essential for fungal development, pathogenicity, and autophagy in Magnaporthe oryzae	23
Time after time: detecting annual patterns in stream bacterial biofilm communities	23
Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs	23
Fate of glacier surface snow‐originating bacteria in the glacier‐fed hydrologic continuums	23
Nitrogen fertilization differentially affects the symbiotic capacity of two co‐occurring ectomycorrhizal species	22
Ferroptosis induced by the biocontrol agent Pythium oligandrum enhances soybean resistance to Phytophthora sojae	22
Correction to “Five structural genes required for ceramide synthesis in Caulobacter and for bacterial survival”	22
How Useful Are Plant Traits in Explaining Variation in Phyllosphere Microbial Abundance and Composition Across Hosts?	22
Comprehensive analysis of the regulatory network of blue‐light‐regulated conidiation and hydrophobin production in Trichoderma guizhouense	22
Widespread formation of intracellular calcium carbonates by the bloom‐forming cyanobacterium Microcystis	22
Diversity and ecology of Radiolaria in modern oceans	22
Unravelling Biodiversity, Assembly Mechanisms and Coexistence Patterns of Abundant and Rare Microeukaryotes in Water and Sediment: New Insights From Volcanic Lakes in Arxan Geopark	22
A fungal powdery mildew pathogen induces extensive local and marginal systemic changes in the Arabidopsis thaliana microbiota	22
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The brown root rot fungus Phellinus noxius affects microbial communities in different root‐associated niches of Ficus trees	21
An ArsRC fusion protein enhances arsenate sensing and detoxification	21
Linear scaling between microbial predator and prey densities in the global ocean	21
Biodegradation in wastewater treatment plants: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	21
Methylated cycloalkanes fuel a novel genus in the Porticoccaceae family (Ca. Reddybacter gen. nov)	21
Respiratory protein interactions in Dehalobacter sp. strain 8M revealed through genomic and native proteomic analyses	21
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Novel virulent and temperate cyanophages predicted to infect Microcoleus associated with anatoxin‐producing benthic mats	21
CotG controls spore surface formation in response to the temperature of growth in Bacillus subtilis	21
Elevated O3 concentrations alter the compartment‐specific microbial communities inhabiting rust‐infected poplars	20
Oxic–anoxic cycling promotes coupling between complex carbon metabolism and denitrification in woodchip bioreactors	20
Long‐term unsustainable patterns of development rather than recent deforestation caused the emergence of Orthocoronavirinae species	20
Environmental Microbiology and Environmental Microbiology Reports 2023 and onwards	20
Ecology of Listeria monocytogenes and Listeria species in India: the occurrence, resistance to biocides, genomic landscape and biocontrol	20
Sarracenia pitcher plant‐associated microbial communities differ primarily by host species across a longitudinal gradient	20
Climate dictates microbial community composition and diversity in Australian biological soil crusts (biocrusts)	19
Countrywide inter‐epidemic region migration pattern suggests the role of southwestern population in wheat stripe rust epidemics in China	19
Viable but non‐cultivable state: a strategy for Staphylococcus aureus survivable in dual‐species biofilms with Pseudomonas aeruginosa?	19
Novel broad‐spectrum bacteriophages against Xanthomonas oryzae and their biocontrol potential in rice bacterial diseases	19
Membrane lipid renovation in Pseudomonas aeruginosa ‐ implications for phage therapy?	19
A perspective on insect–microbe holobionts facing thermal fluctuations in a climate‐change context	19
Resource availability drives bacteria community resistance to pathogen invasion via altering bacterial pairwise interactions	19
Water Quality and Land Use Shape Bacterial Communities Across 621 Canadian Lakes	18
Microscale imaging sheds light on species‐specific strategies for photo‐regulation and photo‐acclimation of microphytobenthic diatoms	18
Phylogenomics, epigenomics, virulome and mobilome of Gram‐negative bacteria co‐resistant to carbapenems and polymyxins: a One Health systematic review and meta‐analyses	18
Does diet breadth affect the complexity of the phytophagous insect microbiota? The case study of Chrysomelidae	18
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Microbial biofilms: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	18
Biogeographical patterns of abundant and rare bacterial biospheres in paddy soils across East Asia	18
Exploring the Exclusive Isolation of Pseudomonas syringae in Peltigera Lichens via Metabolite Analysis and Growth Assays	18
Herbicides Have Minimal and Variable Effects on the Structure and Function of Bacterial Communities in Agricultural Soils	18
Inhibition of nitrous oxide reduction in forest soil microcosms by different forms of methanobactin	18
Experimental evidence that lignin‐modifying enzymes are essential for degrading plant cell wall lignin byPleurotus ostreatususingCRISPR/Cas9	18
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Microbiome Stability Is Linked to Acropora Coral Thermotolerance in Northwestern Philippines	18
From ubiquity to specificity: The diverse functions of bacterial thioredoxin systems	18
Genome and proteome analyses show the gaseous alkane degrader Desulfosarcina sp. strain BuS5 as an extreme metabolic specialist	18
The pH signalling transcription factor PacC modulate growth, development, stress response and pathogenicity of Trichothecium roseum	18
Genome‐Scale Model of Rhizopus microsporus: Metabolic integration of a fungal holobiont with its bacterial and viral endosymbionts	18
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Warm temperature inhibits cytoplasmic incompatibility induced by endosymbiotic Rickettsiella in spider hosts	17
Denitrification fractionates N and O isotopes of nitrate following a ratio independent of carbon sources in freshwaters	17
Genetic Analysis of Polyunsaturated Fatty Acids Biosynthesis Pathway Determines Four Distinct Thraustochytrid Types	17
Investigating the inoculum dynamics of Cladosporium on the surface of raspberry fruits and in the air	17
Golgi‐localized calcium/manganese transporters FgGdt1 and FgPmr1 regulate fungal development and virulence by maintaining Ca2+ and Mn2+ homeostasis in Fu	17
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Differential apicomplexan presence predicts thermal stress mortality in the Mediterranean coral Paramuricea clavata	17
Genetic Diversity and Anatoxin Profiles of Freshwater Benthic Cyanobacteria From Nova Scotia (Canada)	17
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Multi‐omics analysis of antagonistic interactions among free‐living Pseudonocardia from diverse ecosystems	17

Isolation and characterization of a phage collection against Pseudomonas putida	17
Coexistence Theory for Microbial Ecology, and Vice Versa	17
Production and utilization of pseudocobalamin in marine Synechococcus cultures and communities	17
Selective Pressure Influences Inter‐Biome Dispersal in the Assembly of Saline Microbial Communities	17
Bacterial inoculation ofQuercus pyrenaicatrees alters co‐occurrence patterns but not the composition of the rhizosphere bacteriome in wild conditions	17
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Microbial Community of a Sandy Beach Subterranean Estuary is Spatially Heterogeneous and Impacted by Winter Waves	17
High salinity gradients and intermediate spatial scales shaped similar biogeographical and co‐occurrence patterns of microeukaryotes in a tropical freshwater‐saltwater ecosystem	17
Employing a triple metabarcoding approach to differentiate active, dormant and dead microeukaryotes in sediments	17
Issue Information	17
The tetrameric assembly of 2‐aminomuconic 6‐semialdehyde dehydrogenase is a functional requirement of cofactor NAD+ binding	16
Water deficit affects inter‐kingdom microbial connections in plant rhizosphere	16
Metagenomic evidence of a novel family of anammox bacteria in a subsea environment	16
Distinct strategies of the habitat generalists and specialists in sediment of Tibetan lakes	16
Cryptic genetic structure and copy‐number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum	16
Subcellular architecture and metabolic connection in the planktonic photosymbiosis between Collodaria (radiolarians) and their microalgae	16
Functional analysis of the apple fruit microbiome based on shotgun metagenomic sequencing of conventional and organic orchard samples	16
The bianchetto truffle (Tuber borchii) a lead‐resistant ectomycorrhizal fungus increases Quercus cerris phytoremediation potential	16
Web Alert: Microbes and plastics: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	16
Rehabilitation of the ‘bad guys’ for biocontrol applications	16
Kinetic modulation of bacterial hydrolases by microbial community structure in coastal waters	16
Towards risk assessment for antibiotic resistant pathogens in recycled water: a systematic review and summary of research needs	16
Bacteriophages vehiculate a high amount of antibiotic resistance determinants of bacterial origin in the Orne River ecosystem	16
Following the flow—Microbial ecology in surface‐ and groundwaters in the glacial forefield of a rapidly retreating glacier in Iceland	16
Microplastic ingestion affects hydrogen production and microbiomes in the gut of the terrestrial isopod Porcellio scaber	16
Identification of dominant taxa of sooty moulds and their impact on the leaf microbiome	16
The current situation and potential effects of climate change on the microbial load of marine bivalves of the Greek coastlines: an integrative review	16
Uniform selective pressures within redox zones drive gradual changes in microbial community composition in hadal sediments	16
Adaptation ofListeria monocytogenesto perturbation ofc‐di‐AMPmetabolism underpins its role in osmoadaptation and identifies a fosfomycin uptake system	16
The cAMP‐PKA signalling pathway regulates hyphal growth, conidiation, trap morphogenesis, stress tolerance, and autophagy in Arthrobotrys oligospora	16
Bacterial Dynamics in Newly Settled Acropora kenti: Insights From Inoculations With Individual Probiotic Candidates	16
Stability of a dominant sponge‐symbiont in spite of antibiotic‐induced microbiome disturbance	16
Toward a molecular understanding of fluoride stress in a model Pseudomonas strain	16
Diverse viruses of marine archaea discovered using metagenomics	16
Tolerance to Herbicides and Resistance to Antibacterial Drugs of Bacterial Isolates From the Guarani Aquifer System (Brazil)	16
Marine microbes: An annotated selection of World Wide Web sites relevant to the topics in environmental microbiology	16
Interactions between Bdellovibrio and like organisms and bacteria in biofilms: beyond predator–prey dynamics	16
Hierarchical phylogenetic community assembly of soil protists in a temperate agricultural field	16
Biosolids for safe land application: does wastewater treatment plant size matters when considering antibiotics, pollutants, microbiome, mobile genetic elements and associated resistance genes?	15
Continuous Rice Cultivation Increases Celery Yield by Enhancing Plant Beneficial Bacteria in Rice‐Celery Rotations	15
Microecosystem of yak rumen on the Qinghai‐Tibetan Plateau is stable and is unaffected by soil or grass microbiota	15
Long‐term fertilization and tillage regimes have limited effects on structuring bacterial and denitrifier communities in a sandy loam UK soil	15
Summer thaw duration is a strong predictor of the soil microbiome and its response to permafrost thaw in arctic tundra	15
Gene expression in the microbial consortia of colonial Microcystis aeruginosa‐a potential buoyant particulate biofilm	15
Disentangle genus microdiversity within a complex microbial community by using a multi‐distance long‐read binning method: example of Candidatus Accumulibacter	15
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Plant salt tolerance: ACC deaminase‐producing endophytes change plant proteomic profiles	15
Cold Surface Waters of the Sub‐Antarctic Pacific Ocean Support High Cyanophage Abundances and Infection Levels	15
Warming Seawater Temperature and Nutrient Depletion Alters Microbial Community Composition on a Foundational Canopy Kelp Species	15
Comparative transcriptome analysis reveals different adaptation mechanisms for degradation of very long‐chain and normal long‐chain alkanes in Dietzia sp. DQ12‐45‐1b	15
New Strains of the Deep Branching Streptophyte Streptofilum: Phylogenetic Position, Cell Biological and Ecophysiological Traits, and Description of Streptofilum arcticumsp. nov	15
Conditional filamentation as an adaptive trait of bacteria and its ecological significance in soils	15
Short‐term plastisphere colonization dynamics across six plastic types	15
Continental‐scale niche differentiation of dominant topsoil archaea in drylands	15
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The Influence of Symbiont Identity on the Proteomic and Metabolomic Responses of the Model Cnidarian Aiptasia to Thermal Stress	15
Experimental evolution of Pseudomonas putida under silver ion versus nanoparticle stress	15
The 2‐methylpropene degradation pathway in Mycobacteriaceae family strains	15
Isolation and characterization of a novel methanogen Methanosarcina hadiensis sp. nov. from subsurface Boom Clay pore water	15
Fluid dynamics and cell‐bound Psl polysaccharide allows microplastic capture, aggregation and subsequent sedimentation by Pseudomonas aeruginosa in water	15
Polar flagellar wrapping and lateral flagella jointly contribute to Shewanella putrefaciens environmental spreading	15
Physiology and genetics of ethanologenesis in the acetogenic bacterium Acetobacterium woodii	15
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Identification of putative coral pathogens in endangered Caribbean staghorn coral using machine learning	14
Unravelling the genomic and environmental diversity of the ubiquitous Solirubrobacter	14
Antidepressants: A new front in the war against antibiotics resistance	14
Structural and functional microbial diversity in deadwood respond to decomposition dynamics	14
Growth of nitrite‐oxidizing Nitrospira and ammonia‐oxidizing Nitrosomonas in marine recirculating trickling biofilter reactors	14
The exometabolome of microbial communities inhabiting bare ice surfaces on the southern Greenland Ice Sheet	14
Microplastics reduce soil microbial network complexity and ecological deterministic selection	14
Antarctic Geothermal Soils Exhibit an Absence of Regional Habitat Generalist Microorganisms	14
Gene Expression by a Model Fungus in the Ascomycota Provides Insight Into the Decay of Fungal Necromass	14
Prevalence of genetically similar Flavobacterium columnare phages across aquaculture environments reveals a strong potential for pathogen control	14
Wolbachia Feminises a Spider Host With Assistance From Co‐Infecting Symbionts	14
Bacteriophage–Bacteria Interactions Promote Ecological Multifunctionality in Compost‐Applied Soils	14
Evolution under low antibiotic concentrations: a risk for the selection of Pseudomonas aeruginosa multidrug‐resistant mutants in nature	14
Complex and flexible catabolism in Aromatoleum aromaticum pCyN1	14
Issue Information	14
The Bacillus phage SPβ and its relatives: a temperate phage model system reveals new strains, species, prophage integration loci, conserved proteins and lysogeny management component	14
Can we manage microbial systems to enhance carbon storage?	14
Drivers of Marine Phytoplankton Diversity and Connectivity in the Galápagos Archipelago Spanning an ENSO Cycle	14
Adaptive Responses of Cyanobacteria to Phosphate Limitation: A Focus on Marine Diazotrophs	14
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ZfpA‐Dependent Quorum Sensing Shifts in Morphology and Secondary Metabolism in Aspergillus flavus	13
Seasonal dynamics in microbial trace metals transporters during phytoplankton blooms in the Southern Ocean	13
Some like it cold: the cellular organization and physiological limits of cold‐tolerant nitrite‐oxidizing Nitrotoga	13
Aedes aegypti gut transcriptomes respond differently to microbiome transplants from field‐caught or laboratory‐reared mosquitoes	13
Photoelectron‐promoted metabolism of sulphate‐reducing microorganisms in substrate‐depleted environments	13
Issue Information	13
Histone deacetylase SirE regulates development, DNA damage response and aflatoxin production in Aspergillus flavus	13
Pyocin‐mediated antagonistic interactions in Pseudomonas spp. isolated in James Ross Island, Antarctica	13
Issue Information	13
Genome analysis and description of Tunturibacter gen. nov. expands the diversity of Terriglobia in tundra soils	13
Microdiversity in marine pelagic ammonia‐oxidizing archaeal populations in a Mediterranean long‐read metagenome	13
Genetic variation of Batrachochytrium dendrobatidis is linked to skin bacterial diversity in the Pacific treefrog Hyliola regilla (hypochondriaca)	13