Journal of Microbiological Methods

Article	Citations
Evaluation of phenotypic methods for detection of polymyxin B-resistant bacteria	52
Comparison of recombinant and synthetic listeriolysin- O peptide- based indirect ELISA vis-à-vis cultural isolation for detection of listeriosis in caprine and ovine species	52
Quantitative method for measuring the proportion of bacterial cells expressing phase 1 or 2 of flagellin of Salmonella enterica serovar Typhimurium	48
Combination of the electronic nose with microbiology as a tool for rapid detection of Salmonella	44
Improved productivity and dye removal performance of Trametes versicolor pellets using rice husk as a co-substrate	37
Development and comparative evaluation of droplet digital PCR and quantitative PCR for the detection and quantification of Chlamydia psittaci	35
Classification of food spoilage bacterial species and their sodium chloride, sodium acetate and glycine tolerance using chemometrics analysis and Raman spectroscopy	33
Measurement of lactose concentration in milk by using engineered bacteria producing lycopene	30
Editorial Board	29
Quantitative detection of Ganodermati lucidum immunomodulatory protein-8 by a peptide-antigen-antibody sandwich ELISA	28
Development of a high-throughput method for processing sponge-stick samples to detect viable Bacillus anthracis spores	28
Campylobacter fetus subspecies specific PCR assays inferred from comparative genomic analysis for accurate subspecies identification	28
Engineering of a monitorable expression system to characterize β-lactamase genes in Enterobacteriaceae	27
Measurement uncertainty evaluation and risk of false conformity assessment for microbial enumeration tests	24
Rapid antibiotic sensitivity prediction in Pseudomonas aeruginosa using UV–vis-NIR spectroscopy and gray-box one-vs-all models	22
A new killing assay with the Caenorhabditis elegans PX627 mutant to assess the virulence of uropathogenic Escherichia coli strains	21
Spectinomycin, gentamicin, and routine disc diffusion testing: An alternative for the treatment and monitoring of multidrug-resistant Neisseria gonorrhoeae?	20
Editorial Board	19
Nanoparticle immuno-fluorescent probes as a method for detection of viable E. coli O157:H7	19
Editorial Board	19
Validation of gavage sampling as tool for longitudinal sampling of microbiota of the mouse gastric lumen	19
Cryptosporidium occultus in disguise	18
Non-amplification nucleic acid detection with thio-NAD cycling	18
Evaluation of electroactive denitrifiers at different potentials, temperatures and buffers based on microcalorimetry	17
Optimized methodology for obtention of high-yield and -quality RNA from the mycelium of the bioluminescent fungus Neonothopanus gardneri	17

Development of a three-panel multiplex real-time PCR assay for simultaneous detection of nine canine respiratory pathogens	17
Development of an Agrobacterium tumefaciens-mediated transformation system for Tilletia controversa Kühn	16
Diagnosis of abdominal tuberculosis: Detection of mycobacterial CFP-10 and HspX proteins by gold nanoparticle-PCR amplified immunoassay	16
Evaluation and optimization of lysis method for microbial DNA extraction from epiphytic phyllosphere samples	15
Standardization of in vitro dual-species biofilms of Staphylococcus pseudintermedius and Malassezia pachydermatis: a strategy to establish an ex vivo biofilm model	15
Development of qPCR methods to detect and quantify the novel Fusarium graminearum 3ANX chemotype variant	15
Evaluation of the BL-RED (Beta-Lactamase Rapid Electrochemical Detection) test for the rapid detection of resistance to third-generation cephalosporins in Enterobacteriaceae	14
Performance evaluation of InfectID-BSI: A rapid quantitative PCR assay for detecting sepsis-associated organisms directly from whole blood	14
A comparative study of a rapid phenotypic antimicrobial susceptibility testing system directly from positive blood cultures to the disk diffusion and VITEK 2 methods	14
A simple, sensitive, and specific method for the extraction and determination of thiamine and thiamine phosphate esters in fresh yeast biomass	14
Development of polymerase chain reaction assays specific for individual pathogenic Aeromonas species	13
Innovative antigens for more accurate diagnosis of Q fever	13
Quantification of cyanobacterial cyclic di-guanosine monophosphate (c-di-GMP) by liquid chromatography electrospray ionization tandem mass spectrometry	13
Short communication: Investigating optimal laboratory growth conditions of Gracilibacillus halotolerans in media supplemented with salt	13
Editorial Board	13
Multi-dimensional nanoscale liquid chromatography and nano-electrospray ion-trap mass spectrometry for detection of Clostridium botulinum type C and the produced botulinum neurotoxin type C complex	13
Corrigendum to “Visualisation of Mycobacterium avium subsp. paratuberculosis in cultured cells, infected sheep and human tissue sections using fluorescent in situ hybridization (FISH)” [Journal of Mic	13
A method for correcting underestimation of enteric pathogen genome quantities in environmental samples	13
Standardisation and validation of an in-house quantitative real-time polymerase chain reaction (qPCR) assay for the diagnosis of Clostridioides difficile infection	13
Electron microscopic observation of Mycobacterium avium subsp. paratuberculosis in cattle feces after a novel purification using liquid paraffin	12
Evaluation of anti-LipL32 carbon nanotube immunofluorescence probe (carbo-lip) and comparison with MAT, IgM ELISA, IgM spot test and culture for early detection of leptospirosis at local hospital	12
Editorial Board	12
An improved multiplex PCR for Actinobacillus pleuropneumoniae, Glaesserella australis and Pasteurella multocida	12
Development and validation of multiplex PCR based molecular serotyping of Salmonella serovars associated with poultry in India	12
Editorial Board	11
Preservation of Streptococcus pneumoniae quality control strains using chocolate agar blocks in glycerol at minus 70 degrees celsius	11
Molecular detection of “Candidatus Rickettsia tarasevichiae” by Loop-mediated Isothermal Amplification (LAMP) of the ompA gene	11
An improved MTT colorimetric method for rapid viable bacteria counting	11
CLI: A new protocol for the isolation of Lactic Acid Bacteria from complex plant samples	10
Comparison of available methods to evaluate cefiderocol susceptibility in Acinetobacter spp	10
High-throughput screening assay for nitrification inhibitors and the discovery of goitrin as a biological nitrification inhibitor	10
Rapid method for detection of Vibrio cholerae from drinking water with nanomaterials enhancing electrochemical biosensor	10
Syringe filter-based DNA aptamer-enzyme-linked colorimetric assay of Salmonella on lettuce	10
A novel anti-C6 based approach for IgG avidity testing in Lyme borreliosis: A proof-of-concept study	10
Site-2 protease-like protein drives organic solvent tolerance in Rhodococcus ruber	10
Improving high-throughput techniques for bacteriophage discovery in multi-well plates	10
A simple method for purification of epsilon toxin of Clostridium perfringens type D for serum neutralization assay	10
Predicting essential genes of 37 prokaryotes by combining information-theoretic features	10
Performance of four bacterial cell counting apps for smartphones	10
Editorial Board	9
Development of a molecular marker for the Pi1 gene based on the association of the SNAP protocol with the touch-up gradient amplification method	9
A new micro-agar dilution method to determine the minimum inhibitory concentration of essential oils against microorganisms	9
ClustFinder: A tool for threshold-delineated clustering of microbial isolates by pairwise genomic distance	9
Cell-free synthesis of the Salmonella specific broad host range bacteriophage, felixO1	9
The suitability of a glovebox and of a covered still air box design for semi-sterile applications in environmental monitoring	9
Application of proper orthogonal decomposition for evaluation of coherent structures and energy contents in microbial biofilms	9
Pancreatic stone protein levels accurately predict severity in sepsis of various causes earlier than other biomarkers	9
A layered solid-state culture system for investigating the fungal growth and decay behaviour on the cellulosic substrate	9
A novel biosensing strategy for identification of three important bacteria causing meningitis	9
Identification of genus Deinococcus strains by PCR detection using the gyrB gene and its extension to Bacteria domain	9

Evaluation of cobas® Liat® Cdiff, STANDARD™ M10 C. difficile and Xpert® C. difficile BT assays for rapid detection of toxigenic Clostridioides difficile	9
Investigation of the potential of yeast strains for phytase biosynthesis in a two-step screening procedure	9
Editorial Board	9
Host specific Eimeria genus diagnosis and qPCR development in Ovis aries and Capra hircus	8
A variety of simple and ultra-low-cost methods preparing SLiCE extracts and their application to DNA cloning	8
Bacillus spore enumeration using flow cytometry: A proof of concept for probiotic application	8
Editorial Board	8
Revisiting gas-chromatography/mass-spectrometry molar response factors for quantitative analysis (FID or TIC) of glycosidic linkages in polysaccharides produced by oral bacterial biofilms	8
Green synthesis, characterization of silver nanoparticals for biomedical application and environmental remediation	8
Evaluation of the clinical sensitivity and specificity of the BD Max™ Enteric Bacterial Panel for molecular detection of pathogens for acute gastroenteritis in the Singaporean population	8
Methodological aspects of investigating the resistome in pig farm environments	8
An adaptable and non-invasive method for tracking Bifidobacterium animalis subspecies lactis 420 in the mouse gut	8
Braided silk sutures coated with photoreduced silver nanoparticles for eradicating Staphylococcus aureus and Streptococcus mutans infections	8
Inhibition of Pseudomonas aeruginosa with silver in a new synthetic medium: Investigation on the MIC, growth rate and lag-phase at the lower limit	8
SensiGram as a modified Gram staining procedure with higher sensitivity for detection of Gram-negative bacteria in blood culture	8
Long-term preservation and genetic stability of entomopathogenic fungal species	8
Identification of cry genes in Bacillus thuringiensis by multiplex real-time PCR	8
Genotyping of Corynebacterium pseudotuberculosis isolates using PCR-based DNA fingerprinting methods	8
Bioremediation of oily seawater by Bacteria immobilization on a novel carrier material containing nutrients	8
Construction and optimization of a multiplex PMAxx-qPCR assay for viable Bacillus cereus and development of a detection kit	7
High-Resolution Melting (HRM) for rapid MLST analysis of Neisseria meningitidis	7
Crystal violet-based assay for the assessment of bacterial biofilm formation in medical tubing	7
A strip-based assay for detection of CrfA enzyme activity to differentiate Mycobacterium tuberculosis and non-tuberculous mycobacteria	7
Assessment of the capacity of Whatman filter papers as support to store stools for the molecular diagnostic testing of soil-transmitted helminthiasis	7
Phospholipid fatty acid (PLFA) analysis as a tool to estimate absolute abundances from compositional 16S rRNA bacterial metabarcoding data	7
Integrated decentralized blood culture incubation: A step towards a 24/7 microbiology service?	7
Cell-free production of fluorescent proteins for the discovery of novel ribosome-targeting antibiotics	7
Development of a novel visual isothermal amplification assay for rapid detection of Brucella spp.	7
Classifying fungi biodiversity using hybrid transformer models	7
Engineering Citrobacter freundii using CRISPR/Cas9 system	7
Development of real-time PCR methods for the quantification of Methanoculleus, Methanosarcina and Methanobacterium in anaerobic digestion	7
Phenotypic detection of carbapenemase production in carbapenem-resistant isolates with the rapid carbapenemase detection method (rCDM)	6
The performance of a Fully Automated Urine Particle Analyzer, Sysmex UF-5000, in detecting fastidious bacteria in urine samples	6
Microcalorimetric growth behavior of E. coli ATCC 25922 in an MCDSC	6
Comparison of molecular serotyping methods for Actinobacillus pleuropneumoniae and analysis of atypical serotypes detected in routine diagnostics	6
Enhanced insecticidal activity of Bacillus thuringiensis using a late embryogenesis abundant peptide co-expression system	6
Systematic review and critical reflection on the isolation and identification methods for spoilage associated bacteria in fresh marine fish	6
The future in diagnostic tools for TB outbreaks: A review of the approaches with focus on LAMP and RPA diagnostics tests	6
Rapid preparation of 6S RNA-free B. subtilis σA-RNA polymerase and σA	6
Development and validation of a miniaturized bacteriophage host range screening assay against antibiotic resistant Pseudomonas aeruginosa	6
Rapid detection of KPC-producing Klebsiella pneumoniae in China based on MALDI-TOF MS	6
Advances in molecular diagnostics of Neisseria gonorrhoeae	6
Coupon position does not affect Pseudomonas aeruginosa and Staphylococcus aureus biofilm densities in the CDC biofilm reactor	6
Estimation of biosurfactant production parameters and yields without conducting additional experiments on a larger production scale	6
Editorial Board	6
Differentiation of Salmonella vaccinated and infected animals by serological detection of antibody to T3SS effector SsaK in an indirect ELISA	6
Broth microdilution protocol for determining antimicrobial susceptibility of Legionella pneumophila to clinically relevant antimicrobials	6
A study of various factors affecting satellitism tests of Haemophilus influenzae and Haemophilus parainfluenzae using Staphylococcus aureus as the source of NAD	6
Microbiome analysis from formalin-fixed paraffin-embedded tissues: Current challenges and future perspectives	5
A replica plating method for efficient, high-throughput screening of antibiotic gene clusters in bacteria uncovers a holomycin-like cluster in the clinical isolate, Pantoea agglomerans 20KB447973	5
Efficiency of CRISPR-Cas9 genetic engineering in Escherichia coli BL21 is impaired by lack of Lon protease	5
Bacterial growth comparison of vaccine and non-vaccine type Streptococcus pneumoniae in different enrichment broths	5
Quantitative investigation of the bacterial content of periodontal abscess samples by real-time PCR	5
Evaluation of a nucleic acid amplification system, GENECUBE, for rapid detection of staphylococcal nuc and mecA in blood culture samples	5
Application of flow cytometry for rapid, high-throughput, multiparametric analysis of environmental microbiomes	5
Design and validation of universal and taxon-specific 16S rRNA qPCR primers for detection of freshwater harmful algal bloom-forming cyanobacteria	5
Anionic nanocellulose as competing agent in microbial DNA extraction from mine process samples	5
A new duplex qPCR-based method to quantify Mycoplasma mycoides in complex cell culture systems and host tissues	5
A new PMA-qPCR method for rapid and accurate detection of viable bacteria and spores of marine-derived Bacillus velezensis B-9987	5
Comparison of DNA/RNA yield and integrity between PMAP36-mediated and other bacterial lysis methods	5
Comparing DNA isolation and sequencing strategies for 16S rRNA gene amplicon analysis in biofilm containing environments	5
Studying the pre-implantation uterine microbiota in cattle using transabdominal laparoscopic low-volume lavage: Aiming for zero-contamination	5
Curing of common plasmids in gram-negative bacteria using a Cas9-based conjugative vector	5
Identification of bacterial infection types in decomposition stages at various temperatures using pathology images and artificial intelligence algorithms	5
A multistep enrichment process with custom growth medium improves resuscitation of chlorine-stressed coliforms from secondary sewage effluents	5
Electrotransformation of thermophilic bacterium Caldimonas manganoxidans	5
A new plate-hanging method for biofilm quantification and its application to evaluate the role of surface hydrophobicity	5
Insight into the biotechnology potential of Alicyclobacillus tolerans from whole genome sequence analysis and genome-scale metabolic network modeling.	5
Validation of pleural fluid group A Streptococcus and Staphylococcus aureus PCR assays and their potential clinical impact in children with complicated pneumonia	5
Improvement of the silver staining method for bacterial flagella	5
Occurrence of Rhodococcus sp. RR1 prmA and Rhodococcus jostii RHA1 prmA across microbial communities and their enumeration during 1,4-dioxane biodegradation	5
Comparative analysis of diagnostic assays for scrub typhus: Unveiling enhanced approaches for accurate detection	5
Follow-up of solid-state fungal wood pretreatment by a novel near-infrared spectroscopy-based lignin calibration model	5
Evaluation of the eazyplex® EHEC complete (Amplex) assay for the differentiation of stx1 and stx2 positivity in stool samples	5
Direct Xylella fastidiosa whole genome sequencing from various plant species using targeted enrichment	5
Easy detection of siderophore production in diluted growth media using an improved CAS reagent	5
A practical method for gas changing time estimation using a simple gas-liquid mass transfer model	5
Rapid counting of Kazachstania humilis and Saccharomyces cerevisiae in sourdough by deep learning-based classifier	5
Application of a rapid and sensitive RPA-CRISPR/Cas12a assay for BCSP31-based Brucella detection	5
Editorial Board	5

A simple, efficient and cost-effective method for medium- to longterm maintenance and storage of Mycobacterium abscessus complex organisms	5
Electrochemical based quantification of bacterial growth in media using square wave voltammetry and low cost screen printed electrodes	5
Subtractive genomics approach: A guide to unveiling therapeutic targets across pathogens	5
Evaluation of a commercial microbial enrichment kit used prior DNA extraction to improve the molecular detection of vector-borne pathogens from naturally infected dogs	5
Determination of limit of detection and relative limit of detection of Salmonella in raw pet food matrices using Salmonella bacteriological analytical manual methods	5
Editorial Board	5
Novel standard biodegradation test for synthetic phosphonates	5
Standardized ready-to-use laboratory protocol to isolate primary human wound associated fibroblasts from infected wound samples for clinical applications	5